Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542320 | XP_013443384.1 | 94.751 | 362 | 8 | 1 | 1 | 351 | 1 | 362 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542320 | sp|Q6WUC2|7OMT_PAPSO | 47.661 | 342 | 165 | 6 | 22 | 349 | 5 | 346 | 1.37e-112 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542320 | A0A072TIP9 | 94.751 | 362 | 8 | 1 | 1 | 351 | 1 | 362 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0542320 | Msa0600490 | 0.828509 | 8.641003e-55 | -8.615850e-47 |
| Msa0542320 | Msa0639620 | 0.854047 | 1.596023e-61 | -8.615850e-47 |
| Msa0542320 | Msa0677450 | 0.822156 | 2.753790e-53 | -8.615850e-47 |
| Msa0542320 | Msa0677470 | 0.817152 | 3.824512e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542320 | MtrunA17_Chr4g0022021 | 94.751 | 362 | 8 | 1 | 1 | 351 | 1 | 362 | 0.0 | 705 |
| Msa0542320 | MtrunA17_Chr4g0021981 | 85.556 | 360 | 41 | 1 | 1 | 349 | 1 | 360 | 0.0 | 640 |
| Msa0542320 | MtrunA17_Chr3g0121301 | 38.922 | 334 | 186 | 5 | 31 | 351 | 27 | 355 | 1.78e-80 | 249 |
| Msa0542320 | MtrunA17_Chr5g0432251 | 39.942 | 343 | 187 | 9 | 25 | 351 | 14 | 353 | 8.69e-70 | 222 |
| Msa0542320 | MtrunA17_Chr5g0432301 | 37.647 | 340 | 195 | 8 | 25 | 349 | 15 | 352 | 1.11e-67 | 217 |
| Msa0542320 | MtrunA17_Chr7g0276401 | 38.617 | 347 | 182 | 11 | 15 | 338 | 18 | 356 | 8.09e-66 | 212 |
| Msa0542320 | MtrunA17_Chr3g0128011 | 37.812 | 320 | 173 | 11 | 44 | 343 | 90 | 403 | 5.04e-65 | 211 |
| Msa0542320 | MtrunA17_Chr7g0276411 | 34.897 | 341 | 194 | 12 | 22 | 338 | 7 | 343 | 4.09e-63 | 205 |
| Msa0542320 | MtrunA17_Chr5g0432241 | 36.441 | 354 | 203 | 8 | 18 | 351 | 3 | 354 | 6.54e-63 | 204 |
| Msa0542320 | MtrunA17_Chr1g0188391 | 37.026 | 343 | 193 | 10 | 20 | 343 | 9 | 347 | 5.70e-61 | 199 |
| Msa0542320 | MtrunA17_Chr5g0448091 | 35.962 | 317 | 184 | 8 | 44 | 343 | 35 | 349 | 4.38e-60 | 197 |
| Msa0542320 | MtrunA17_Chr8g0345851 | 43.621 | 243 | 123 | 6 | 107 | 338 | 32 | 271 | 1.12e-59 | 194 |
| Msa0542320 | MtrunA17_Chr4g0040621 | 34.639 | 332 | 201 | 7 | 25 | 343 | 27 | 355 | 8.15e-58 | 191 |
| Msa0542320 | MtrunA17_Chr7g0219161 | 35.756 | 344 | 196 | 10 | 18 | 343 | 7 | 343 | 8.97e-58 | 191 |
| Msa0542320 | MtrunA17_Chr7g0219141 | 33.604 | 369 | 209 | 9 | 1 | 351 | 1 | 351 | 1.05e-57 | 191 |
| Msa0542320 | MtrunA17_Chr5g0432261 | 36.145 | 332 | 187 | 7 | 25 | 351 | 10 | 321 | 1.07e-57 | 190 |
| Msa0542320 | MtrunA17_Chr7g0223241 | 35.780 | 327 | 199 | 7 | 28 | 346 | 16 | 339 | 2.26e-57 | 190 |
| Msa0542320 | MtrunA17_Chr8g0367491 | 34.513 | 339 | 194 | 12 | 34 | 347 | 33 | 368 | 2.57e-57 | 190 |
| Msa0542320 | MtrunA17_Chr5g0432211 | 35.191 | 341 | 182 | 8 | 25 | 346 | 14 | 334 | 2.05e-56 | 187 |
| Msa0542320 | MtrunA17_Chr7g0223231 | 34.030 | 335 | 204 | 7 | 23 | 346 | 11 | 339 | 3.05e-56 | 187 |
| Msa0542320 | MtrunA17_Chr1g0188371 | 35.821 | 335 | 195 | 10 | 20 | 337 | 9 | 340 | 6.12e-56 | 187 |
| Msa0542320 | MtrunA17_Chr8g0367441 | 33.702 | 362 | 208 | 14 | 5 | 338 | 1 | 358 | 3.79e-54 | 182 |
| Msa0542320 | MtrunA17_Chr4g0046361 | 31.742 | 356 | 224 | 6 | 13 | 351 | 2 | 355 | 6.09e-53 | 178 |
| Msa0542320 | MtrunA17_Chr4g0046531 | 34.132 | 334 | 204 | 7 | 23 | 343 | 374 | 704 | 2.76e-52 | 184 |
| Msa0542320 | MtrunA17_Chr4g0046531 | 33.832 | 334 | 205 | 7 | 23 | 343 | 12 | 342 | 2.82e-52 | 184 |
| Msa0542320 | MtrunA17_Chr8g0367451 | 33.041 | 342 | 204 | 11 | 20 | 342 | 26 | 361 | 2.35e-51 | 175 |
| Msa0542320 | MtrunA17_Chr3g0085211 | 35.110 | 319 | 184 | 10 | 44 | 344 | 43 | 356 | 3.27e-51 | 174 |
| Msa0542320 | MtrunA17_Chr4g0014641 | 33.994 | 353 | 210 | 9 | 14 | 346 | 3 | 352 | 9.95e-51 | 173 |
| Msa0542320 | MtrunA17_Chr1g0163601 | 34.579 | 321 | 185 | 11 | 44 | 343 | 38 | 354 | 5.12e-50 | 171 |
| Msa0542320 | MtrunA17_Chr8g0367501 | 32.840 | 338 | 202 | 12 | 20 | 338 | 13 | 344 | 6.02e-50 | 172 |
| Msa0542320 | MtrunA17_Chr1g0163611 | 34.268 | 321 | 186 | 11 | 44 | 343 | 38 | 354 | 1.90e-49 | 169 |
| Msa0542320 | MtrunA17_Chr3g0130011 | 33.143 | 350 | 214 | 9 | 16 | 350 | 7 | 351 | 3.81e-49 | 168 |
| Msa0542320 | MtrunA17_Chr2g0307521 | 36.593 | 317 | 177 | 13 | 44 | 341 | 35 | 346 | 4.44e-49 | 168 |
| Msa0542320 | MtrunA17_Chr4g0046341 | 33.148 | 359 | 218 | 6 | 13 | 351 | 2 | 358 | 7.54e-49 | 168 |
| Msa0542320 | MtrunA17_Chr7g0218181 | 34.169 | 319 | 186 | 12 | 44 | 344 | 41 | 353 | 4.92e-48 | 166 |
| Msa0542320 | MtrunA17_Chr7g0218261 | 33.856 | 319 | 189 | 12 | 44 | 344 | 40 | 354 | 6.15e-48 | 166 |
| Msa0542320 | MtrunA17_Chr4g0014561 | 33.429 | 347 | 208 | 9 | 20 | 346 | 9 | 352 | 6.83e-48 | 165 |
| Msa0542320 | MtrunA17_Chr1g0163621 | 32.710 | 321 | 191 | 10 | 44 | 343 | 52 | 368 | 1.57e-47 | 165 |
| Msa0542320 | MtrunA17_Chr8g0367381 | 32.710 | 321 | 189 | 11 | 19 | 325 | 19 | 326 | 2.47e-47 | 163 |
| Msa0542320 | MtrunA17_Chr2g0314271 | 34.557 | 327 | 196 | 10 | 27 | 338 | 12 | 335 | 2.66e-47 | 164 |
| Msa0542320 | MtrunA17_Chr3g0085201 | 33.019 | 318 | 192 | 10 | 44 | 344 | 30 | 343 | 2.95e-47 | 164 |
| Msa0542320 | MtrunA17_Chr4g0014681 | 33.141 | 347 | 209 | 9 | 20 | 346 | 9 | 352 | 4.47e-47 | 163 |
| Msa0542320 | MtrunA17_Chr7g0218211 | 34.161 | 322 | 187 | 13 | 43 | 344 | 39 | 355 | 4.08e-46 | 161 |
| Msa0542320 | MtrunA17_Chr7g0218301 | 32.308 | 325 | 192 | 9 | 44 | 344 | 41 | 361 | 6.46e-46 | 160 |
| Msa0542320 | MtrunA17_Chr7g0218131 | 33.542 | 319 | 189 | 11 | 44 | 343 | 41 | 355 | 6.69e-46 | 160 |
| Msa0542320 | MtrunA17_Chr7g0218271 | 32.923 | 325 | 190 | 9 | 44 | 344 | 41 | 361 | 1.18e-45 | 160 |
| Msa0542320 | MtrunA17_Chr1g0200491 | 34.877 | 324 | 180 | 13 | 44 | 343 | 41 | 357 | 2.42e-45 | 159 |
| Msa0542320 | MtrunA17_Chr3g0130061 | 31.412 | 347 | 218 | 9 | 16 | 347 | 7 | 348 | 2.98e-44 | 155 |
| Msa0542320 | MtrunA17_Chr4g0014661 | 32.955 | 352 | 209 | 9 | 14 | 346 | 3 | 346 | 1.28e-43 | 154 |
| Msa0542320 | MtrunA17_Chr4g0014591 | 32.378 | 349 | 215 | 8 | 14 | 346 | 3 | 346 | 3.17e-40 | 145 |
| Msa0542320 | MtrunA17_Chr6g0482291 | 41.463 | 164 | 83 | 5 | 177 | 338 | 5 | 157 | 9.37e-37 | 130 |
| Msa0542320 | MtrunA17_Chr4g0014601 | 31.418 | 261 | 164 | 5 | 14 | 262 | 3 | 260 | 2.23e-29 | 114 |
| Msa0542320 | MtrunA17_Chr7g0219171 | 45.312 | 128 | 65 | 3 | 227 | 351 | 117 | 242 | 1.60e-28 | 111 |
| Msa0542320 | MtrunA17_Chr8g0367401 | 49.000 | 100 | 50 | 1 | 160 | 259 | 12 | 110 | 5.00e-26 | 101 |
| Msa0542320 | MtrunA17_Chr4g0011691 | 43.820 | 89 | 50 | 0 | 261 | 349 | 140 | 228 | 1.26e-22 | 95.1 |
| Msa0542320 | MtrunA17_Chr1g0170941 | 53.947 | 76 | 34 | 1 | 181 | 256 | 1 | 75 | 6.23e-21 | 85.9 |
| Msa0542320 | MtrunA17_Chr8g0367461 | 43.617 | 94 | 51 | 2 | 246 | 338 | 1 | 93 | 2.59e-18 | 79.7 |
| Msa0542320 | MtrunA17_Chr8g0367391 | 44.186 | 86 | 44 | 4 | 255 | 338 | 32 | 115 | 1.42e-14 | 70.1 |
| Msa0542320 | MtrunA17_Chr8g0367421 | 37.255 | 102 | 46 | 2 | 158 | 259 | 10 | 93 | 1.48e-13 | 67.0 |
| Msa0542320 | MtrunA17_Chr8g0367471 | 44.444 | 72 | 39 | 1 | 177 | 248 | 5 | 75 | 2.40e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542320 | AT5G54160.1 | 36.278 | 317 | 186 | 6 | 42 | 344 | 34 | 348 | 1.07e-68 | 220 |
| Msa0542320 | AT4G35160.1 | 35.854 | 357 | 197 | 6 | 22 | 351 | 24 | 375 | 2.88e-66 | 214 |
| Msa0542320 | AT1G77520.1 | 35.311 | 354 | 201 | 11 | 17 | 344 | 17 | 368 | 2.25e-58 | 194 |
| Msa0542320 | AT4G35150.1 | 33.133 | 332 | 181 | 5 | 22 | 343 | 10 | 310 | 2.43e-58 | 192 |
| Msa0542320 | AT1G51990.1 | 32.102 | 352 | 206 | 12 | 16 | 344 | 8 | 349 | 6.41e-54 | 181 |
| Msa0542320 | AT1G51990.2 | 31.818 | 352 | 207 | 12 | 16 | 344 | 8 | 349 | 1.80e-51 | 175 |
| Msa0542320 | AT1G63140.2 | 34.637 | 358 | 206 | 11 | 11 | 344 | 15 | 368 | 3.08e-51 | 175 |
| Msa0542320 | AT1G63140.4 | 34.637 | 358 | 206 | 11 | 11 | 344 | 35 | 388 | 3.92e-51 | 175 |
| Msa0542320 | AT1G77530.1 | 33.244 | 373 | 217 | 13 | 5 | 347 | 1 | 371 | 5.87e-50 | 172 |
| Msa0542320 | AT1G33030.1 | 34.688 | 320 | 183 | 12 | 44 | 343 | 23 | 336 | 6.07e-47 | 163 |
| Msa0542320 | AT3G53140.1 | 34.018 | 341 | 202 | 11 | 27 | 347 | 12 | 349 | 2.10e-46 | 162 |
| Msa0542320 | AT1G62900.1 | 45.946 | 185 | 96 | 3 | 162 | 344 | 10 | 192 | 4.44e-46 | 156 |
| Msa0542320 | AT5G53810.1 | 33.129 | 326 | 191 | 10 | 44 | 344 | 42 | 365 | 1.41e-45 | 160 |
| Msa0542320 | AT5G37170.1 | 32.867 | 286 | 172 | 8 | 63 | 343 | 50 | 320 | 5.12e-45 | 157 |
| Msa0542320 | AT5G37170.2 | 40.541 | 185 | 105 | 4 | 162 | 343 | 38 | 220 | 5.96e-45 | 154 |
| Msa0542320 | AT1G21130.1 | 35.423 | 319 | 176 | 12 | 44 | 338 | 42 | 354 | 7.15e-43 | 153 |
| Msa0542320 | AT1G21100.1 | 35.110 | 319 | 177 | 11 | 44 | 338 | 42 | 354 | 1.70e-42 | 152 |
| Msa0542320 | AT5G37170.3 | 41.520 | 171 | 95 | 4 | 176 | 343 | 4 | 172 | 3.62e-42 | 145 |
| Msa0542320 | AT1G21120.1 | 34.483 | 319 | 179 | 11 | 44 | 338 | 42 | 354 | 5.74e-41 | 147 |
| Msa0542320 | AT1G21120.2 | 34.483 | 319 | 179 | 11 | 44 | 338 | 90 | 402 | 1.25e-40 | 148 |
| Msa0542320 | AT1G21110.1 | 33.231 | 325 | 187 | 11 | 44 | 344 | 42 | 360 | 1.58e-40 | 146 |
| Msa0542320 | AT1G76790.1 | 34.043 | 329 | 181 | 12 | 44 | 344 | 32 | 352 | 6.12e-40 | 145 |
| Msa0542320 | AT1G63140.1 | 31.365 | 271 | 161 | 9 | 11 | 259 | 35 | 302 | 3.98e-25 | 103 |
| Msa0542320 | AT1G33030.2 | 34.188 | 234 | 132 | 10 | 44 | 259 | 23 | 252 | 5.12e-24 | 99.8 |
| Msa0542320 | AT1G33030.3 | 34.188 | 234 | 132 | 10 | 44 | 259 | 23 | 252 | 9.74e-24 | 99.4 |
| Msa0542320 | AT1G21130.2 | 32.773 | 238 | 133 | 10 | 44 | 259 | 42 | 274 | 2.59e-18 | 84.7 |
| Msa0542320 | AT1G63140.3 | 29.200 | 250 | 152 | 9 | 11 | 238 | 35 | 281 | 1.39e-15 | 76.6 |
| Msa0542320 | AT1G77530.2 | 29.389 | 262 | 156 | 11 | 5 | 238 | 1 | 261 | 2.59e-15 | 75.5 |
Find 74 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCACCTTCTGCCTTTA+AGG | 0.035762 | 4_1:-27085640 | Msa0542320:intron |
| TTAAACAACTCATTGAATTT+TGG | 0.113417 | 4_1:+27082164 | None:intergenic |
| CATCAACCAATGTTTGAATT+TGG | 0.182200 | 4_1:+27082072 | None:intergenic |
| ATTTCACTCATAAAGTTAAA+AGG | 0.207818 | 4_1:+27082366 | None:intergenic |
| AGAGCTTATCCTCACATTAA+AGG | 0.223700 | 4_1:-27082011 | Msa0542320:CDS |
| TGCTTGGACAAATTGAAATA+TGG | 0.256837 | 4_1:-27082710 | Msa0542320:CDS |
| GTTGATGTTGGTGGTGGTAT+TGG | 0.262573 | 4_1:-27082056 | Msa0542320:CDS |
| TCAACATCCACGCACCTTAA+AGG | 0.284260 | 4_1:+27085626 | None:intergenic |
| GCTATGCCAATGTCAGTAAA+TGG | 0.312596 | 4_1:+27081098 | None:intergenic |
| GCTTGACACGTGCATCAAAA+TGG | 0.313818 | 4_1:-27082458 | Msa0542320:CDS |
| GGCAGAAGGTGGAGAGTGAT+TGG | 0.355201 | 4_1:+27085647 | None:intergenic |
| ATTCTGCACAATTTGAGTTA+AGG | 0.365186 | 4_1:+27082593 | None:intergenic |
| GTAAATGGTTCATCTCCTTC+TGG | 0.366037 | 4_1:+27081113 | None:intergenic |
| AACAGGAAAGGTGATAATAT+TGG | 0.375818 | 4_1:-27081150 | Msa0542320:CDS |
| GTGTTTAGAGCTGTTATTGC+TGG | 0.403865 | 4_1:-27082113 | Msa0542320:CDS |
| GATGTTGGTGGTGGTATTGG+AGG | 0.413798 | 4_1:-27082053 | Msa0542320:CDS |
| AAAGGACAAGCATGCACAAC+TGG | 0.416268 | 4_1:-27082140 | Msa0542320:CDS |
| GATAATATTGGATCATGTAT+TGG | 0.435063 | 4_1:-27081138 | Msa0542320:CDS |
| CTTAAAAGTAGAGTGGAATC+AGG | 0.438559 | 4_1:+27082552 | None:intergenic |
| ATGAGTGAAATTGTAAAAGA+AGG | 0.441259 | 4_1:-27082354 | Msa0542320:CDS |
| TTAAAAGGGTTCATATGAGT+TGG | 0.444485 | 4_1:+27082381 | None:intergenic |
| TTTCACTCATAAAGTTAAAA+GGG | 0.448814 | 4_1:+27082367 | None:intergenic |
| ATGGGTGATGCCATCATACT+TGG | 0.452889 | 4_1:+27081950 | None:intergenic |
| TAAAAGGGTTCATATGAGTT+GGG | 0.453853 | 4_1:+27082382 | None:intergenic |
| AGGAAAGGACTGAAGAGAAC+TGG | 0.459870 | 4_1:-27081037 | Msa0542320:CDS |
| GTTATTGCTGGATACAAAGA+TGG | 0.468883 | 4_1:-27082101 | Msa0542320:CDS |
| AAGGCAATACCAGAGAAAAC+AGG | 0.476074 | 4_1:-27081167 | Msa0542320:CDS |
| AAAAGTGACATTGGCACCAT+TGG | 0.485135 | 4_1:-27082421 | Msa0542320:CDS |
| AAACATGTCTCCTCCAACAT+GGG | 0.491810 | 4_1:+27081932 | None:intergenic |
| GATGAACCATTTACTGACAT+TGG | 0.495764 | 4_1:-27081104 | Msa0542320:CDS |
| GGTAGTGGATTCTTCAAGAC+TGG | 0.501890 | 4_1:-27081229 | Msa0542320:intron |
| TGCACACAACTCTGGTGGTA+AGG | 0.502617 | 4_1:-27081057 | Msa0542320:CDS |
| AAATACTTATTCAAAGAGAC+AGG | 0.505650 | 4_1:-27081014 | Msa0542320:CDS |
| GATTGGAAATGCTTCAATGA+TGG | 0.507484 | 4_1:+27080946 | None:intergenic |
| TTTAAGAGTAATGAGAGTAA+TGG | 0.509813 | 4_1:-27082535 | Msa0542320:CDS |
| ATTTAACCAAATTCAAACAT+TGG | 0.521052 | 4_1:-27082078 | Msa0542320:CDS |
| TTCAATGAGTTGTTTAACAA+AGG | 0.521127 | 4_1:-27082158 | Msa0542320:CDS |
| CTAGGGTGTGAGCAAGGAAG+AGG | 0.523226 | 4_1:-27082742 | Msa0542320:intron |
| CAAACATTGGTTGATGTTGG+TGG | 0.526942 | 4_1:-27082065 | Msa0542320:CDS |
| ATTCAAACATTGGTTGATGT+TGG | 0.530112 | 4_1:-27082068 | Msa0542320:CDS |
| CAAACATGTCTCCTCCAACA+TGG | 0.530132 | 4_1:+27081931 | None:intergenic |
| TCTTCAATATCTTTATGCAA+TGG | 0.534210 | 4_1:+27081198 | None:intergenic |
| TAAAGATATTGAAGAACTGT+AGG | 0.535387 | 4_1:-27081190 | Msa0542320:CDS |
| TGCTGATGCTATTTACATCA+AGG | 0.535867 | 4_1:-27081895 | Msa0542320:intron |
| TCAACGGCACCCAAGTATGA+TGG | 0.541751 | 4_1:-27081960 | Msa0542320:CDS |
| AAGTAGAGTGGAATCAGGAG+AGG | 0.545001 | 4_1:+27082557 | None:intergenic |
| GAAGAGGAGGAATCATTGCT+TGG | 0.551152 | 4_1:-27082726 | Msa0542320:CDS |
| TTTGCCTCATGTTGTTTCAA+CGG | 0.559425 | 4_1:-27081976 | Msa0542320:CDS |
| GGAAATGCTTCAATGATGGT+TGG | 0.559513 | 4_1:+27080950 | None:intergenic |
| GATGGCATCACCCATGTTGG+AGG | 0.561480 | 4_1:-27081942 | Msa0542320:CDS |
| ATATTGTTTGCACACAACTC+TGG | 0.563913 | 4_1:-27081065 | Msa0542320:CDS |
| TATGATGGCATCACCCATGT+TGG | 0.578808 | 4_1:-27081945 | Msa0542320:CDS |
| ACAAGACACAAAAGTGACAT+TGG | 0.586673 | 4_1:-27082430 | Msa0542320:CDS |
| GGGTGTGAGCAAGGAAGAGG+AGG | 0.586759 | 4_1:-27082739 | Msa0542320:CDS |
| CATTACTCTTAAAAGTAGAG+TGG | 0.588009 | 4_1:+27082545 | None:intergenic |
| ATGTAAATAGCATCAGCACT+AGG | 0.594614 | 4_1:+27081900 | None:intergenic |
| GATATTGAAGAACTGTAGGA+AGG | 0.597258 | 4_1:-27081186 | Msa0542320:CDS |
| ACATTGGTTGATGTTGGTGG+TGG | 0.602342 | 4_1:-27082062 | Msa0542320:CDS |
| AAATTAATACCTTTAATGTG+AGG | 0.603470 | 4_1:+27082002 | None:intergenic |
| AGGATAGCGGTTTACACTGA+CGG | 0.604044 | 4_1:+27082613 | None:intergenic |
| CGCACCTTAAAGGCAGAAGG+TGG | 0.612114 | 4_1:+27085636 | None:intergenic |
| AGTAGAGTGGAATCAGGAGA+GGG | 0.613280 | 4_1:+27082558 | None:intergenic |
| ACAACTCTGGTGGTAAGGAA+AGG | 0.616165 | 4_1:-27081052 | Msa0542320:CDS |
| AAATGACTAGGGTGTGAGCA+AGG | 0.619206 | 4_1:-27082748 | Msa0542320:intron |
| ACAATTTGAGTTAAGGATAG+CGG | 0.620633 | 4_1:+27082600 | None:intergenic |
| TTGTTTGCACACAACTCTGG+TGG | 0.628395 | 4_1:-27081062 | Msa0542320:CDS |
| CCACGCACCTTAAAGGCAGA+AGG | 0.632006 | 4_1:+27085633 | None:intergenic |
| GAAACCGGCGAAATTCTCTA+CGG | 0.639770 | 4_1:-27082480 | Msa0542320:CDS |
| CAAGCCGTAGAGAATTTCGC+CGG | 0.643000 | 4_1:+27082476 | None:intergenic |
| GATCATGTATTGGATCCAGA+AGG | 0.647337 | 4_1:-27081128 | Msa0542320:CDS |
| TGAGTCTCTAGTAACACCAA+TGG | 0.648452 | 4_1:+27082405 | None:intergenic |
| TGGGTGATGCCATCATACTT+GGG | 0.669553 | 4_1:+27081951 | None:intergenic |
| AATACCAGAGAAAACAGGAA+AGG | 0.671132 | 4_1:-27081162 | Msa0542320:CDS |
| GGTGCCGTTGAAACAACATG+AGG | 0.720627 | 4_1:+27081972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATTAATTTTAAAA+AGG | + | chr4_1:27081721-27081740 | None:intergenic | 0.0% |
| !!! | AATATATAATTTTAAAATAT+TGG | + | chr4_1:27083665-27083684 | None:intergenic | 0.0% |
| !!! | TACTATATTGATTAATTTAT+TGG | - | chr4_1:27081294-27081313 | Msa0542320:intron | 10.0% |
| !! | TTAAAAAAATCAAAAATTTG+AGG | - | chr4_1:27082004-27082023 | Msa0542320:CDS | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | - | chr4_1:27083145-27083164 | Msa0542320:intron | 10.0% |
| !!! | CAATTTCTTTTTTTTTTTTT+AGG | + | chr4_1:27083723-27083742 | None:intergenic | 10.0% |
| !! | AAGTAATGTATAAATTTAAT+TGG | + | chr4_1:27083816-27083835 | None:intergenic | 10.0% |
| !! | AATTAGGATTGTTAATTATT+TGG | + | chr4_1:27081102-27081121 | None:intergenic | 15.0% |
| !!! | ATAATTAACAATCCTAATTT+TGG | - | chr4_1:27081103-27081122 | Msa0542320:CDS | 15.0% |
| !!! | ATATATATATTTTTGAACTG+TGG | - | chr4_1:27081430-27081449 | Msa0542320:intron | 15.0% |
| !! | ATATAAGTAATATATGCATT+TGG | - | chr4_1:27081868-27081887 | Msa0542320:intron | 15.0% |
| !! | GAATTAAACATGAATTAAAT+TGG | + | chr4_1:27082962-27082981 | None:intergenic | 15.0% |
| !!! | ACATGATTTGTTTTAAAAAT+AGG | - | chr4_1:27083230-27083249 | Msa0542320:intron | 15.0% |
| !!! | CATGATTTGTTTTAAAAATA+GGG | - | chr4_1:27083231-27083250 | Msa0542320:intron | 15.0% |
| !!! | AATGAAATTCACTAATTTTT+GGG | + | chr4_1:27083363-27083382 | None:intergenic | 15.0% |
| !!! | TAATGAAATTCACTAATTTT+TGG | + | chr4_1:27083364-27083383 | None:intergenic | 15.0% |
| !! | TGTTTGAAAAAAAATATTAG+AGG | - | chr4_1:27083602-27083621 | Msa0542320:intron | 15.0% |
| !! | TATAAACTGTGATTAATAAT+GGG | + | chr4_1:27083855-27083874 | None:intergenic | 15.0% |
| !! | TTATAAACTGTGATTAATAA+TGG | + | chr4_1:27083856-27083875 | None:intergenic | 15.0% |
| !! | TACTAAATATACGTTATAAA+TGG | - | chr4_1:27085034-27085053 | Msa0542320:intron | 15.0% |
| !!! | AAATACGTCTTTTAAATTTT+AGG | - | chr4_1:27085241-27085260 | Msa0542320:intron | 15.0% |
| !! | TAGAATTAGTTGAATATTAA+CGG | - | chr4_1:27085291-27085310 | Msa0542320:intron | 15.0% |
| !! | GTCTAACTATAAATATAAAA+TGG | - | chr4_1:27085313-27085332 | Msa0542320:intron | 15.0% |
| !!! | AATTTTGTTTGTTTTGTCAT+GGG | + | chr4_1:27081204-27081223 | None:intergenic | 20.0% |
| !!! | TAATTTTGTTTGTTTTGTCA+TGG | + | chr4_1:27081205-27081224 | None:intergenic | 20.0% |
| !! | TTCTAACAATAAATCTTGAT+TGG | - | chr4_1:27082180-27082199 | Msa0542320:intron | 20.0% |
| !! | ATTATCACTTATGTATCATT+GGG | - | chr4_1:27082305-27082324 | Msa0542320:intron | 20.0% |
| !! | ATATATGCATATGAAGAAAA+AGG | - | chr4_1:27082400-27082419 | Msa0542320:CDS | 20.0% |
| !!! | ACAAAACATAAAGTATTCTA+AGG | - | chr4_1:27083024-27083043 | Msa0542320:intron | 20.0% |
| !! | TAAAAATCCGTATTTAATTC+AGG | - | chr4_1:27083118-27083137 | Msa0542320:intron | 20.0% |
| !! | AACAAAACCTGAATTAAATA+CGG | + | chr4_1:27083128-27083147 | None:intergenic | 20.0% |
| !!! | TGGTGATTGTAAATTTTATA+GGG | - | chr4_1:27083262-27083281 | Msa0542320:intron | 20.0% |
| !! | TTAGTGAATTTCATTAAGAT+AGG | - | chr4_1:27083368-27083387 | Msa0542320:intron | 20.0% |
| !! | ACAAAAGATGATACATTTAT+AGG | + | chr4_1:27083498-27083517 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCATTGATAA+AGG | + | chr4_1:27083554-27083573 | None:intergenic | 20.0% |
| !! | TTTCACTCATAAAGTTAAAA+GGG | + | chr4_1:27084258-27084277 | None:intergenic | 20.0% |
| !! | ATTTCACTCATAAAGTTAAA+AGG | + | chr4_1:27084259-27084278 | None:intergenic | 20.0% |
| !!! | TAAACAACTCATTGAATTTT+GGG | + | chr4_1:27084460-27084479 | None:intergenic | 20.0% |
| !!! | TTAAACAACTCATTGAATTT+TGG | + | chr4_1:27084461-27084480 | None:intergenic | 20.0% |
| !! | ATTTAACCAAATTCAAACAT+TGG | - | chr4_1:27084544-27084563 | Msa0542320:intron | 20.0% |
| !! | AAATTAATACCTTTAATGTG+AGG | + | chr4_1:27084623-27084642 | None:intergenic | 20.0% |
| !!! | AATGAATATTTTTGTGTGAA+TGG | - | chr4_1:27085371-27085390 | Msa0542320:intron | 20.0% |
| !!! | ATGAATATTTTTGTGTGAAT+GGG | - | chr4_1:27085372-27085391 | Msa0542320:intron | 20.0% |
| !!! | CACACACTAAACATATTTTT+TGG | - | chr4_1:27081046-27081065 | Msa0542320:CDS | 25.0% |
| ! | CATTGCATTATTCCTTAATT+AGG | + | chr4_1:27081253-27081272 | None:intergenic | 25.0% |
| ! | GAATAATGCAATGTACAATT+TGG | - | chr4_1:27081260-27081279 | Msa0542320:intron | 25.0% |
| ! | TCATTATTTGTGTTTGCTTT+AGG | + | chr4_1:27081696-27081715 | None:intergenic | 25.0% |
| ! | TAACAAAATCAACACTTTCA+TGG | - | chr4_1:27081916-27081935 | Msa0542320:CDS | 25.0% |
| ! | TATTGATGTGATATTAAGAG+AGG | - | chr4_1:27082077-27082096 | Msa0542320:CDS | 25.0% |
| ! | GATTATCACTTATGTATCAT+TGG | - | chr4_1:27082304-27082323 | Msa0542320:intron | 25.0% |
| ! | CTATTGAGATACTAATACAA+TGG | + | chr4_1:27082434-27082453 | None:intergenic | 25.0% |
| ! | CTGACAATATGTTTATAAGT+GGG | - | chr4_1:27082833-27082852 | Msa0542320:intron | 25.0% |
| ! | TGACAATATGTTTATAAGTG+GGG | - | chr4_1:27082834-27082853 | Msa0542320:intron | 25.0% |
| !!! | CTCTGATTTGTTGAAAATTA+GGG | + | chr4_1:27082903-27082922 | None:intergenic | 25.0% |
| ! | ATGTTTAATTCCGTATTCTA+AGG | - | chr4_1:27082971-27082990 | Msa0542320:intron | 25.0% |
| ! | TTAAAAATAGGGATCAAAAG+TGG | - | chr4_1:27083242-27083261 | Msa0542320:intron | 25.0% |
| !! | GTGGTGATTGTAAATTTTAT+AGG | - | chr4_1:27083261-27083280 | Msa0542320:intron | 25.0% |
| !! | ACTAAGTCGAATGAAAATTT+TGG | - | chr4_1:27083285-27083304 | Msa0542320:intron | 25.0% |
| ! | AGGATTATAAACTACTTTCA+TGG | + | chr4_1:27083478-27083497 | None:intergenic | 25.0% |
| !! | TTTTTAATCCCTCTATACAA+TGG | - | chr4_1:27083517-27083536 | Msa0542320:intron | 25.0% |
| ! | AAAAAAACGAACGTAAAAAG+TGG | - | chr4_1:27083625-27083644 | Msa0542320:intron | 25.0% |
| !!! | TTTGTATTCCTTTAAAGTAG+AGG | - | chr4_1:27083750-27083769 | Msa0542320:intron | 25.0% |
| !!! | TTGTATTCCTTTAAAGTAGA+GGG | - | chr4_1:27083751-27083770 | Msa0542320:intron | 25.0% |
| !! | TTTTTACCATTTTGTGGATT+TGG | + | chr4_1:27083778-27083797 | None:intergenic | 25.0% |
| ! | ATCACAGTTTATAAATGACT+AGG | - | chr4_1:27083862-27083881 | Msa0542320:intron | 25.0% |
| ! | TCACAGTTTATAAATGACTA+GGG | - | chr4_1:27083863-27083882 | Msa0542320:intron | 25.0% |
| ! | TTTAAGAGTAATGAGAGTAA+TGG | - | chr4_1:27084087-27084106 | Msa0542320:intron | 25.0% |
| ! | ATGAGTGAAATTGTAAAAGA+AGG | - | chr4_1:27084268-27084287 | Msa0542320:intron | 25.0% |
| ! | TTCAATGAGTTGTTTAACAA+AGG | - | chr4_1:27084464-27084483 | Msa0542320:intron | 25.0% |
| !! | TCGATGAATTTTGTCTATTT+TGG | - | chr4_1:27085114-27085133 | Msa0542320:intron | 25.0% |
| !! | CGATGAATTTTGTCTATTTT+GGG | - | chr4_1:27085115-27085134 | Msa0542320:intron | 25.0% |
| !!! | CTTGATTTTAGGATTTAAGT+CGG | - | chr4_1:27085186-27085205 | Msa0542320:intron | 25.0% |
| !!! | TTGATTTTAGGATTTAAGTC+GGG | - | chr4_1:27085187-27085206 | Msa0542320:intron | 25.0% |
| ! | TCTTCAATATCTTTATGCAA+TGG | + | chr4_1:27085427-27085446 | None:intergenic | 25.0% |
| ! | TAAAGATATTGAAGAACTGT+AGG | - | chr4_1:27085432-27085451 | Msa0542320:intron | 25.0% |
| ! | GATAATATTGGATCATGTAT+TGG | - | chr4_1:27085484-27085503 | Msa0542320:intron | 25.0% |
| ! | AAATACTTATTCAAAGAGAC+AGG | - | chr4_1:27085608-27085627 | Msa0542320:intron | 25.0% |
| ACAATACTAAGGCCAAAATT+AGG | + | chr4_1:27081118-27081137 | None:intergenic | 30.0% | |
| GCATTCTTTGAACCTAATTA+AGG | - | chr4_1:27081238-27081257 | Msa0542320:intron | 30.0% | |
| AGTTTGTATCATGTTCAGTT+TGG | - | chr4_1:27081341-27081360 | Msa0542320:intron | 30.0% | |
| ! | AAGAACTTTTGCAGTTAATG+TGG | + | chr4_1:27081502-27081521 | None:intergenic | 30.0% |
| TAACTGCAAAAGTTCTTCTA+TGG | - | chr4_1:27081505-27081524 | Msa0542320:intron | 30.0% | |
| ! | GGGTATAATTGTTGTTAAGA+AGG | - | chr4_1:27081530-27081549 | Msa0542320:intron | 30.0% |
| TATCGTCTCAATCAATATTG+CGG | - | chr4_1:27081670-27081689 | Msa0542320:intron | 30.0% | |
| TTAATGCATCACATTCACAA+AGG | - | chr4_1:27082282-27082301 | Msa0542320:intron | 30.0% | |
| AAGTGATATCCCATCATAAA+TGG | - | chr4_1:27082459-27082478 | Msa0542320:CDS | 30.0% | |
| CTTGATGAGAGTTTATAAAG+AGG | - | chr4_1:27082541-27082560 | Msa0542320:CDS | 30.0% | |
| CCACTTATAAACATATTGTC+AGG | + | chr4_1:27082835-27082854 | None:intergenic | 30.0% | |
| CCTGACAATATGTTTATAAG+TGG | - | chr4_1:27082832-27082851 | Msa0542320:intron | 30.0% | |
| GACAATATGTTTATAAGTGG+GGG | - | chr4_1:27082835-27082854 | Msa0542320:intron | 30.0% | |
| CTAACTCTTCCTTACAAAAT+CGG | + | chr4_1:27082879-27082898 | None:intergenic | 30.0% | |
| !! | GCTCTGATTTGTTGAAAATT+AGG | + | chr4_1:27082904-27082923 | None:intergenic | 30.0% |
| AATTAAATTGGTGCGTGAAT+AGG | + | chr4_1:27082950-27082969 | None:intergenic | 30.0% | |
| !! | TTTAGCTCTTCCTTAGAATA+CGG | + | chr4_1:27082984-27083003 | None:intergenic | 30.0% |
| ! | AAGTCGAATGAAAATTTTGG+AGG | - | chr4_1:27083288-27083307 | Msa0542320:intron | 30.0% |
| ! | AGTCGAATGAAAATTTTGGA+GGG | - | chr4_1:27083289-27083308 | Msa0542320:intron | 30.0% |
| ATCCACAAAATGGTAAAAAC+TGG | - | chr4_1:27083779-27083798 | Msa0542320:intron | 30.0% | |
| TCCACAAAATGGTAAAAACT+GGG | - | chr4_1:27083780-27083799 | Msa0542320:intron | 30.0% | |
| ! | AACTGTGATTAATAATGGGA+TGG | + | chr4_1:27083851-27083870 | None:intergenic | 30.0% |
| TGCTTGGACAAATTGAAATA+TGG | - | chr4_1:27083912-27083931 | Msa0542320:intron | 30.0% | |
| ! | ACAATTTGAGTTAAGGATAG+CGG | + | chr4_1:27084025-27084044 | None:intergenic | 30.0% |
| ! | ATTCTGCACAATTTGAGTTA+AGG | + | chr4_1:27084032-27084051 | None:intergenic | 30.0% |
| CATTACTCTTAAAAGTAGAG+TGG | + | chr4_1:27084080-27084099 | None:intergenic | 30.0% | |
| TAAAAGGGTTCATATGAGTT+GGG | + | chr4_1:27084243-27084262 | None:intergenic | 30.0% | |
| TTAAAAGGGTTCATATGAGT+TGG | + | chr4_1:27084244-27084263 | None:intergenic | 30.0% | |
| ! | GTAAAAGAAGGCACAAAAAA+TGG | - | chr4_1:27084280-27084299 | Msa0542320:intron | 30.0% |
| TGGTTATGACCAATTTGAAA+TGG | - | chr4_1:27084424-27084443 | Msa0542320:intron | 30.0% | |
| CATCAACCAATGTTTGAATT+TGG | + | chr4_1:27084553-27084572 | None:intergenic | 30.0% | |
| ! | ATTCAAACATTGGTTGATGT+TGG | - | chr4_1:27084554-27084573 | Msa0542320:intron | 30.0% |
| AAAATCGCATTCAAAATCGA+AGG | - | chr4_1:27084817-27084836 | Msa0542320:intron | 30.0% | |
| AAGGATAGCTATTTACATCA+AGG | - | chr4_1:27084836-27084855 | Msa0542320:intron | 30.0% | |
| AAAATCGCATTCAAAATCGA+AGG | - | chr4_1:27084817-27084836 | Msa0542320:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | - | chr4_1:27084939-27084958 | Msa0542320:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | - | chr4_1:27084961-27084980 | Msa0542320:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | - | chr4_1:27084991-27085010 | Msa0542320:intron | 30.0% | |
| TGGTATATAGTCAGTCATAA+AGG | - | chr4_1:27085054-27085073 | Msa0542320:intron | 30.0% | |
| !!! | TCTATTTTGGGATTCTACTA+TGG | - | chr4_1:27085127-27085146 | Msa0542320:intron | 30.0% |
| CGACTTAAATCCTAAAATCA+AGG | + | chr4_1:27085188-27085207 | None:intergenic | 30.0% | |
| AACAGGAAAGGTGATAATAT+TGG | - | chr4_1:27085472-27085491 | Msa0542320:intron | 30.0% | |
| !!! | TTTTGATGATGTTGTAACGA+GGG | + | chr4_1:27085637-27085656 | None:intergenic | 30.0% |
| !!! | ATTTTGATGATGTTGTAACG+AGG | + | chr4_1:27085638-27085657 | None:intergenic | 30.0% |
| CGCAATTTAGCACAATACTA+AGG | + | chr4_1:27081129-27081148 | None:intergenic | 35.0% | |
| TATGAGAAAAGACAGAGGTA+AGG | - | chr4_1:27081151-27081170 | Msa0542320:CDS | 35.0% | |
| GTTTACCAGTTCACAGAATA+TGG | - | chr4_1:27081173-27081192 | Msa0542320:CDS | 35.0% | |
| CAAATCCATATTCTGTGAAC+TGG | + | chr4_1:27081181-27081200 | None:intergenic | 35.0% | |
| ATGATACAAACTGAGAAGGA+GGG | + | chr4_1:27081333-27081352 | None:intergenic | 35.0% | |
| GAACATGATACAAACTGAGA+AGG | + | chr4_1:27081337-27081356 | None:intergenic | 35.0% | |
| GTATCATGTTCAGTTTGGAT+TGG | - | chr4_1:27081346-27081365 | Msa0542320:intron | 35.0% | |
| TGCAAAAGTTCTTCTATGGA+AGG | - | chr4_1:27081509-27081528 | Msa0542320:intron | 35.0% | |
| GCAAAAGTTCTTCTATGGAA+GGG | - | chr4_1:27081510-27081529 | Msa0542320:intron | 35.0% | |
| ! | CTTTCTCTCACTTTGTTTCA+AGG | + | chr4_1:27081616-27081635 | None:intergenic | 35.0% |
| ! | GTCTAAAGCAAGAGCTTTAT+TGG | - | chr4_1:27082026-27082045 | Msa0542320:CDS | 35.0% |
| TCTTCCTTAGATTGATTACG+TGG | + | chr4_1:27082368-27082387 | None:intergenic | 35.0% | |
| TAAGTGGAGCCATTTATGAT+GGG | + | chr4_1:27082471-27082490 | None:intergenic | 35.0% | |
| ATAAGTGGAGCCATTTATGA+TGG | + | chr4_1:27082472-27082491 | None:intergenic | 35.0% | |
| ! | TCCACTTATGTGGTTTGTAT+TGG | - | chr4_1:27082483-27082502 | Msa0542320:CDS | 35.0% |
| ! | CCACTTATGTGGTTTGTATT+GGG | - | chr4_1:27082484-27082503 | Msa0542320:CDS | 35.0% |
| GATGAGAGTTTATAAAGAGG+AGG | - | chr4_1:27082544-27082563 | Msa0542320:CDS | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | + | chr4_1:27082617-27082636 | None:intergenic | 35.0% | |
| GTATACTCCACAACATTATG+AGG | - | chr4_1:27083390-27083409 | Msa0542320:intron | 35.0% | |
| AGTTGTTCCTCATAATGTTG+TGG | + | chr4_1:27083400-27083419 | None:intergenic | 35.0% | |
| ATTTGGTCCCTCTACTTTAA+AGG | + | chr4_1:27083761-27083780 | None:intergenic | 35.0% | |
| ! | TCCCAGTTTTTACCATTTTG+TGG | + | chr4_1:27083784-27083803 | None:intergenic | 35.0% |
| !!! | TTTTGCTCTAAAAGCAGTTG+TGG | - | chr4_1:27083961-27083980 | Msa0542320:intron | 35.0% |
| CTTAAAAGTAGAGTGGAATC+AGG | + | chr4_1:27084073-27084092 | None:intergenic | 35.0% | |
| AGTGCAGAAAAATCAGAAAC+CGG | - | chr4_1:27084127-27084146 | Msa0542320:intron | 35.0% | |
| ACAAGACACAAAAGTGACAT+TGG | - | chr4_1:27084192-27084211 | Msa0542320:intron | 35.0% | |
| AAAATGGCACTGCTTTCTTT+AGG | - | chr4_1:27084296-27084315 | Msa0542320:intron | 35.0% | |
| CAACACTAGCCATTTCAAAT+TGG | + | chr4_1:27084436-27084455 | None:intergenic | 35.0% | |
| GTTATTGCTGGATACAAAGA+TGG | - | chr4_1:27084521-27084540 | Msa0542320:intron | 35.0% | |
| AGAGCTTATCCTCACATTAA+AGG | - | chr4_1:27084611-27084630 | Msa0542320:intron | 35.0% | |
| !! | TTTGCCTCATGTTGTTTCAA+CGG | - | chr4_1:27084646-27084665 | Msa0542320:intron | 35.0% |
| ATGTAAATAGCATCAGCACT+AGG | + | chr4_1:27084725-27084744 | None:intergenic | 35.0% | |
| ! | TGCTGATGCTATTTACATCA+AGG | - | chr4_1:27084727-27084746 | Msa0542320:intron | 35.0% |
| ATGATCGTATATACGAACCA+AGG | - | chr4_1:27084774-27084793 | Msa0542320:intron | 35.0% | |
| CGAACCAAGGTTATCAAAAT+CGG | - | chr4_1:27084787-27084806 | Msa0542320:intron | 35.0% | |
| GAACCAAGGTTATCAAAATC+GGG | - | chr4_1:27084788-27084807 | Msa0542320:intron | 35.0% | |
| ATGATCGTATATACGAACCA+AGG | - | chr4_1:27084774-27084793 | Msa0542320:intron | 35.0% | |
| CGAACCAAGGTTATCAAAAT+CGG | - | chr4_1:27084787-27084806 | Msa0542320:intron | 35.0% | |
| GAACCAAGGTTATCAAAATC+GGG | - | chr4_1:27084788-27084807 | Msa0542320:intron | 35.0% | |
| CTATGGATTTAAGTCGTTGA+TGG | - | chr4_1:27085144-27085163 | Msa0542320:intron | 35.0% | |
| ! | GTCGCAAAATCCTTGATTTT+AGG | - | chr4_1:27085175-27085194 | Msa0542320:intron | 35.0% |
| ! | ATTTTTGTGTGAATGGGTAG+TGG | - | chr4_1:27085378-27085397 | Msa0542320:intron | 35.0% |
| GATATTGAAGAACTGTAGGA+AGG | - | chr4_1:27085436-27085455 | Msa0542320:intron | 35.0% | |
| AATACCAGAGAAAACAGGAA+AGG | - | chr4_1:27085460-27085479 | Msa0542320:intron | 35.0% | |
| GATGAACCATTTACTGACAT+TGG | - | chr4_1:27085518-27085537 | Msa0542320:intron | 35.0% | |
| ATATTGTTTGCACACAACTC+TGG | - | chr4_1:27085557-27085576 | Msa0542320:intron | 35.0% | |
| CATGATACAAACTGAGAAGG+AGG | + | chr4_1:27081334-27081353 | None:intergenic | 40.0% | |
| CAACAATCTTGTAATGTGCG+CGG | + | chr4_1:27081945-27081964 | None:intergenic | 40.0% | |
| !! | CAAGAGCTTTATTGGCCTAA+TGG | - | chr4_1:27082034-27082053 | Msa0542320:CDS | 40.0% |
| TGTGCCACGTAATCAATCTA+AGG | - | chr4_1:27082361-27082380 | Msa0542320:CDS | 40.0% | |
| CATAAATGGCTCCACTTATG+TGG | - | chr4_1:27082473-27082492 | Msa0542320:CDS | 40.0% | |
| CCCAATACAAACCACATAAG+TGG | + | chr4_1:27082487-27082506 | None:intergenic | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | + | chr4_1:27082612-27082631 | None:intergenic | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | + | chr4_1:27082613-27082632 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | - | chr4_1:27082916-27082935 | Msa0542320:intron | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | - | chr4_1:27082917-27082936 | Msa0542320:intron | 40.0% | |
| AAATTGGTGCGTGAATAGGT+AGG | + | chr4_1:27082946-27082965 | None:intergenic | 40.0% | |
| TGAGGAACAACTCACAACAA+TGG | - | chr4_1:27083408-27083427 | Msa0542320:intron | 40.0% | |
| GAGGAACAACTCACAACAAT+GGG | - | chr4_1:27083409-27083428 | Msa0542320:intron | 40.0% | |
| CACACATGCCATTGTATAGA+GGG | + | chr4_1:27083528-27083547 | None:intergenic | 40.0% | |
| AAAAGTGACATTGGCACCAT+TGG | - | chr4_1:27084201-27084220 | Msa0542320:intron | 40.0% | |
| TGAGTCTCTAGTAACACCAA+TGG | + | chr4_1:27084220-27084239 | None:intergenic | 40.0% | |
| ! | GTGTTTAGAGCTGTTATTGC+TGG | - | chr4_1:27084509-27084528 | Msa0542320:intron | 40.0% |
| ! | CAAACATTGGTTGATGTTGG+TGG | - | chr4_1:27084557-27084576 | Msa0542320:intron | 40.0% |
| AAACATGTCTCCTCCAACAT+GGG | + | chr4_1:27084693-27084712 | None:intergenic | 40.0% | |
| !! | AGTCCCGATTTTGATAACCT+TGG | + | chr4_1:27084794-27084813 | None:intergenic | 40.0% |
| !! | AGTCCCGATTTTGATAACCT+TGG | + | chr4_1:27084794-27084813 | None:intergenic | 40.0% |
| AAGGCAATACCAGAGAAAAC+AGG | - | chr4_1:27085455-27085474 | Msa0542320:intron | 40.0% | |
| ! | ATCACCTTTCCTGTTTTCTC+TGG | + | chr4_1:27085467-27085486 | None:intergenic | 40.0% |
| GATCATGTATTGGATCCAGA+AGG | - | chr4_1:27085494-27085513 | Msa0542320:intron | 40.0% | |
| GTAAATGGTTCATCTCCTTC+TGG | + | chr4_1:27085512-27085531 | None:intergenic | 40.0% | |
| GCTATGCCAATGTCAGTAAA+TGG | + | chr4_1:27085527-27085546 | None:intergenic | 40.0% | |
| TCAACATCCACGCACCTTAA+AGG | + | chr4_1:27080999-27081018 | None:intergenic | 45.0% | |
| GCGCTTATGAGAAAAGACAG+AGG | - | chr4_1:27081146-27081165 | Msa0542320:CDS | 45.0% | |
| GAGTGTCTCAAGCAACCATT+AGG | + | chr4_1:27082052-27082071 | None:intergenic | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | - | chr4_1:27082506-27082525 | Msa0542320:CDS | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | - | chr4_1:27082609-27082628 | Msa0542320:CDS | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | - | chr4_1:27082681-27082700 | Msa0542320:CDS | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | + | chr4_1:27082711-27082730 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | + | chr4_1:27082712-27082731 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | + | chr4_1:27082715-27082734 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | - | chr4_1:27082758-27082777 | Msa0542320:intron | 45.0% | |
| TGTGTTAAGAGTCCCACATC+GGG | - | chr4_1:27082759-27082778 | Msa0542320:intron | 45.0% | |
| GTGTGTTAAGAGTCCCACAT+CGG | - | chr4_1:27082758-27082777 | Msa0542320:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | - | chr4_1:27082803-27082822 | Msa0542320:intron | 45.0% | |
| !! | CCTTACAAAATCGGCTTGTG+AGG | + | chr4_1:27082870-27082889 | None:intergenic | 45.0% |
| !! | CCTCACAAGCCGATTTTGTA+AGG | - | chr4_1:27082867-27082886 | Msa0542320:intron | 45.0% |
| GCACACATGCCATTGTATAG+AGG | + | chr4_1:27083529-27083548 | None:intergenic | 45.0% | |
| GAGGGACCAAATCCACAAAA+TGG | - | chr4_1:27083769-27083788 | Msa0542320:intron | 45.0% | |
| AAATGACTAGGGTGTGAGCA+AGG | - | chr4_1:27083874-27083893 | Msa0542320:intron | 45.0% | |
| GAAGAGGAGGAATCATTGCT+TGG | - | chr4_1:27083896-27083915 | Msa0542320:intron | 45.0% | |
| ! | AGGATAGCGGTTTACACTGA+CGG | + | chr4_1:27084012-27084031 | None:intergenic | 45.0% |
| AGTAGAGTGGAATCAGGAGA+GGG | + | chr4_1:27084067-27084086 | None:intergenic | 45.0% | |
| AAGTAGAGTGGAATCAGGAG+AGG | + | chr4_1:27084068-27084087 | None:intergenic | 45.0% | |
| GAAACCGGCGAAATTCTCTA+CGG | - | chr4_1:27084142-27084161 | Msa0542320:intron | 45.0% | |
| GCTTGACACGTGCATCAAAA+TGG | - | chr4_1:27084164-27084183 | Msa0542320:intron | 45.0% | |
| AAAGGACAAGCATGCACAAC+TGG | - | chr4_1:27084482-27084501 | Msa0542320:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGTGG+TGG | - | chr4_1:27084560-27084579 | Msa0542320:intron | 45.0% |
| !! | GTTGATGTTGGTGGTGGTAT+TGG | - | chr4_1:27084566-27084585 | Msa0542320:intron | 45.0% |
| TGGGTGATGCCATCATACTT+GGG | + | chr4_1:27084674-27084693 | None:intergenic | 45.0% | |
| ATGGGTGATGCCATCATACT+TGG | + | chr4_1:27084675-27084694 | None:intergenic | 45.0% | |
| TATGATGGCATCACCCATGT+TGG | - | chr4_1:27084677-27084696 | Msa0542320:intron | 45.0% | |
| CAAACATGTCTCCTCCAACA+TGG | + | chr4_1:27084694-27084713 | None:intergenic | 45.0% | |
| !! | GGTAGTGGATTCTTCAAGAC+TGG | - | chr4_1:27085393-27085412 | Msa0542320:intron | 45.0% |
| TTGTTTGCACACAACTCTGG+TGG | - | chr4_1:27085560-27085579 | Msa0542320:intron | 45.0% | |
| ACAACTCTGGTGGTAAGGAA+AGG | - | chr4_1:27085570-27085589 | Msa0542320:intron | 45.0% | |
| AGGAAAGGACTGAAGAGAAC+TGG | - | chr4_1:27085585-27085604 | Msa0542320:intron | 45.0% | |
| !!! | TAAAATTAATATTTTTTTGA+TGG | - | chr4_1:27081724-27081743 | Msa0542320:intron | 5.0% |
| !! | TCAAAATTAAATAATAAAAA+AGG | - | chr4_1:27082248-27082267 | Msa0542320:intron | 5.0% |
| !!! | TATAAATTTTATATTTTTTG+CGG | - | chr4_1:27083094-27083113 | Msa0542320:intron | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+GGG | - | chr4_1:27083146-27083165 | Msa0542320:intron | 5.0% |
| !!! | AATTTCTTTTTTTTTTTTTA+GGG | + | chr4_1:27083722-27083741 | None:intergenic | 5.0% |
| !!! | TATTTAGTAATAATTTTTTT+GGG | + | chr4_1:27085023-27085042 | None:intergenic | 5.0% |
| !!! | ATATTTAGTAATAATTTTTT+TGG | + | chr4_1:27085024-27085043 | None:intergenic | 5.0% |
| CTCTCCACCTTCTGCCTTTA+AGG | - | chr4_1:27080982-27081001 | Msa0542320:CDS | 50.0% | |
| GTCTATCCGATGTGGGACTT+GGG | + | chr4_1:27082515-27082534 | None:intergenic | 50.0% | |
| CAAGTCCCACATCGGATAGA+CGG | - | chr4_1:27082514-27082533 | Msa0542320:CDS | 50.0% | |
| AAGTCCCACATCGGATAGAC+GGG | - | chr4_1:27082515-27082534 | Msa0542320:CDS | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr4_1:27082575-27082594 | Msa0542320:CDS | 50.0% |
| CTAACACAGCCCCACAAAAC+CGG | + | chr4_1:27082588-27082607 | None:intergenic | 50.0% | |
| ATCTTGGACCCAGTGGATCT+TGG | + | chr4_1:27082648-27082667 | None:intergenic | 50.0% | |
| !! | GATAGCGGAAACCTGATAGC+AGG | + | chr4_1:27082682-27082701 | None:intergenic | 50.0% |
| GCTATCAGGTTTCCGCTATC+GGG | - | chr4_1:27082682-27082701 | Msa0542320:CDS | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | + | chr4_1:27082708-27082727 | None:intergenic | 50.0% |
| !! | CAAAATCGGCTTGTGAGGTG+AGG | + | chr4_1:27082865-27082884 | None:intergenic | 50.0% |
| TTGGTGCGTGAATAGGTAGG+TGG | + | chr4_1:27082943-27082962 | None:intergenic | 50.0% | |
| CAAGCCGTAGAGAATTTCGC+CGG | + | chr4_1:27084149-27084168 | None:intergenic | 50.0% | |
| !! | GATGTTGGTGGTGGTATTGG+AGG | - | chr4_1:27084569-27084588 | Msa0542320:intron | 50.0% |
| !! | GGTGCCGTTGAAACAACATG+AGG | + | chr4_1:27084653-27084672 | None:intergenic | 50.0% |
| TCAACGGCACCCAAGTATGA+TGG | - | chr4_1:27084662-27084681 | Msa0542320:intron | 50.0% | |
| TGCACACAACTCTGGTGGTA+AGG | - | chr4_1:27085565-27085584 | Msa0542320:intron | 50.0% | |
| GGCAGAAGGTGGAGAGTGAT+TGG | + | chr4_1:27080978-27080997 | None:intergenic | 55.0% | |
| CGCACCTTAAAGGCAGAAGG+TGG | + | chr4_1:27080989-27081008 | None:intergenic | 55.0% | |
| CCACGCACCTTAAAGGCAGA+AGG | + | chr4_1:27080992-27081011 | None:intergenic | 55.0% | |
| !! | CCTTCTGCCTTTAAGGTGCG+TGG | - | chr4_1:27080989-27081008 | Msa0542320:CDS | 55.0% |
| CGTCTATCCGATGTGGGACT+TGG | + | chr4_1:27082516-27082535 | None:intergenic | 55.0% | |
| GAGTCCCGTCTATCCGATGT+GGG | + | chr4_1:27082522-27082541 | None:intergenic | 55.0% | |
| AGAGTCCCGTCTATCCGATG+TGG | + | chr4_1:27082523-27082542 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr4_1:27082574-27082593 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | - | chr4_1:27082574-27082593 | Msa0542320:CDS | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr4_1:27082576-27082595 | Msa0542320:CDS | 55.0% |
| AGAGCCTCTCCAAGATCCAC+TGG | - | chr4_1:27082636-27082655 | Msa0542320:CDS | 55.0% | |
| GAGCCTCTCCAAGATCCACT+GGG | - | chr4_1:27082637-27082656 | Msa0542320:CDS | 55.0% | |
| CACTGGGTCCAAGATCCACT+GGG | - | chr4_1:27082653-27082672 | Msa0542320:CDS | 55.0% | |
| AGCGGAAACCTGATAGCAGG+TGG | + | chr4_1:27082679-27082698 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | + | chr4_1:27082725-27082744 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | - | chr4_1:27082725-27082744 | Msa0542320:CDS | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | + | chr4_1:27082732-27082751 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | + | chr4_1:27082737-27082756 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | - | chr4_1:27082734-27082753 | Msa0542320:CDS | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | - | chr4_1:27082735-27082754 | Msa0542320:CDS | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | - | chr4_1:27082736-27082755 | Msa0542320:CDS | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | - | chr4_1:27082809-27082828 | Msa0542320:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | + | chr4_1:27082814-27082833 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | + | chr4_1:27082815-27082834 | None:intergenic | 55.0% | |
| CTAGGGTGTGAGCAAGGAAG+AGG | - | chr4_1:27083880-27083899 | Msa0542320:intron | 55.0% | |
| GATGGCATCACCCATGTTGG+AGG | - | chr4_1:27084680-27084699 | Msa0542320:intron | 55.0% | |
| GCACTCCTCACCTCACAAGC+CGG | - | chr4_1:27082566-27082585 | Msa0542320:CDS | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | + | chr4_1:27082579-27082598 | None:intergenic | 60.0% |
| GGACCCAGTGGATCTTGGAG+AGG | + | chr4_1:27082643-27082662 | None:intergenic | 60.0% | |
| CCAGTGGATCTTGGACCCAG+TGG | + | chr4_1:27082655-27082674 | None:intergenic | 60.0% | |
| CCACTGGGTCCAAGATCCAC+TGG | - | chr4_1:27082652-27082671 | Msa0542320:CDS | 60.0% | |
| !! | AATGGTGGGTGGCCCGATAG+CGG | + | chr4_1:27082697-27082716 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | - | chr4_1:27082733-27082752 | Msa0542320:CDS | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | + | chr4_1:27082738-27082757 | None:intergenic | 60.0% | |
| AAGAGTCCCACATCGGGTGC+TGG | - | chr4_1:27082765-27082784 | Msa0542320:intron | 60.0% | |
| TCACGACCAGCACCCGATGT+GGG | + | chr4_1:27082774-27082793 | None:intergenic | 60.0% | |
| !! | ACATCGGGTGCTGGTCGTGA+GGG | - | chr4_1:27082774-27082793 | Msa0542320:intron | 60.0% |
| GGGTGTGAGCAAGGAAGAGG+AGG | - | chr4_1:27083883-27083902 | Msa0542320:intron | 60.0% | |
| GCAGGTGGCCCAGTGGATCT+TGG | + | chr4_1:27082664-27082683 | None:intergenic | 65.0% | |
| CCTGATAGCAGGTGGCCCAG+TGG | + | chr4_1:27082671-27082690 | None:intergenic | 65.0% | |
| CCACTGGGCCACCTGCTATC+AGG | - | chr4_1:27082668-27082687 | Msa0542320:CDS | 65.0% | |
| CTCACGACCAGCACCCGATG+TGG | + | chr4_1:27082775-27082794 | None:intergenic | 65.0% | |
| !! | CACATCGGGTGCTGGTCGTG+AGG | - | chr4_1:27082773-27082792 | Msa0542320:intron | 65.0% |
| !! | CATCGGGTGCTGGTCGTGAG+GGG | - | chr4_1:27082775-27082794 | Msa0542320:intron | 65.0% |
| !! | ATCGGGTGCTGGTCGTGAGG+GGG | - | chr4_1:27082776-27082795 | Msa0542320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 27080959 | 27085685 | 27080959 | ID=Msa0542320;Name=Msa0542320 |
| chr4_1 | mRNA | 27080959 | 27085685 | 27080959 | ID=Msa0542320-mRNA-1;Parent=Msa0542320;Name=Msa0542320-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|0.75|1|1|4|0|354 |
| chr4_1 | exon | 27085641 | 27085685 | 27085641 | ID=Msa0542320-mRNA-1:exon:7317;Parent=Msa0542320-mRNA-1 |
| chr4_1 | exon | 27082327 | 27082760 | 27082327 | ID=Msa0542320-mRNA-1:exon:7316;Parent=Msa0542320-mRNA-1 |
| chr4_1 | exon | 27081896 | 27082193 | 27081896 | ID=Msa0542320-mRNA-1:exon:7315;Parent=Msa0542320-mRNA-1 |
| chr4_1 | exon | 27080959 | 27081246 | 27080959 | ID=Msa0542320-mRNA-1:exon:7314;Parent=Msa0542320-mRNA-1 |
| chr4_1 | CDS | 27085641 | 27085685 | 27085641 | ID=Msa0542320-mRNA-1:cds;Parent=Msa0542320-mRNA-1 |
| chr4_1 | CDS | 27082327 | 27082760 | 27082327 | ID=Msa0542320-mRNA-1:cds;Parent=Msa0542320-mRNA-1 |
| chr4_1 | CDS | 27081896 | 27082193 | 27081896 | ID=Msa0542320-mRNA-1:cds;Parent=Msa0542320-mRNA-1 |
| chr4_1 | CDS | 27080959 | 27081246 | 27080959 | ID=Msa0542320-mRNA-1:cds;Parent=Msa0542320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
