Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677450 | XP_013443384.1 | 98.103 | 369 | 7 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677450 | sp|Q6WUC2|7OMT_PAPSO | 49.575 | 353 | 169 | 5 | 22 | 368 | 5 | 354 | 1.39e-123 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677450 | A0A072TIP9 | 98.103 | 369 | 7 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0639620 | Msa0677450 | 0.832477 | 9.244469e-56 | -8.615850e-47 |
| Msa0677450 | Msa0677470 | 0.886890 | 2.305209e-72 | -8.615850e-47 |
| Msa0542320 | Msa0677450 | 0.822156 | 2.753790e-53 | -8.615850e-47 |
| Msa0600490 | Msa0677450 | 0.824515 | 7.740807e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677450 | MtrunA17_Chr4g0022021 | 98.103 | 369 | 7 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Msa0677450 | MtrunA17_Chr4g0021981 | 87.534 | 369 | 46 | 0 | 1 | 369 | 1 | 369 | 0.0 | 683 |
| Msa0677450 | MtrunA17_Chr3g0121301 | 40.762 | 341 | 189 | 6 | 31 | 366 | 27 | 359 | 9.17e-87 | 266 |
| Msa0677450 | MtrunA17_Chr5g0432251 | 41.311 | 351 | 194 | 8 | 25 | 368 | 14 | 359 | 4.21e-78 | 244 |
| Msa0677450 | MtrunA17_Chr5g0432301 | 38.968 | 349 | 203 | 7 | 25 | 367 | 15 | 359 | 3.46e-75 | 237 |
| Msa0677450 | MtrunA17_Chr7g0276401 | 39.178 | 365 | 202 | 10 | 15 | 367 | 18 | 374 | 2.09e-74 | 235 |
| Msa0677450 | MtrunA17_Chr7g0276411 | 36.628 | 344 | 195 | 12 | 22 | 349 | 7 | 343 | 5.91e-70 | 223 |
| Msa0677450 | MtrunA17_Chr3g0128011 | 38.080 | 323 | 179 | 10 | 44 | 354 | 90 | 403 | 9.12e-70 | 224 |
| Msa0677450 | MtrunA17_Chr5g0432241 | 37.293 | 362 | 212 | 7 | 18 | 368 | 3 | 360 | 1.29e-69 | 222 |
| Msa0677450 | MtrunA17_Chr8g0345851 | 43.561 | 264 | 140 | 6 | 107 | 367 | 32 | 289 | 1.55e-66 | 212 |
| Msa0677450 | MtrunA17_Chr5g0448091 | 35.952 | 331 | 198 | 8 | 44 | 365 | 35 | 360 | 5.62e-66 | 213 |
| Msa0677450 | MtrunA17_Chr1g0188391 | 36.212 | 359 | 213 | 9 | 20 | 368 | 9 | 361 | 4.33e-64 | 208 |
| Msa0677450 | MtrunA17_Chr7g0219141 | 34.218 | 377 | 219 | 9 | 1 | 368 | 1 | 357 | 2.00e-63 | 206 |
| Msa0677450 | MtrunA17_Chr8g0367491 | 35.043 | 351 | 203 | 12 | 34 | 367 | 33 | 375 | 5.17e-63 | 206 |
| Msa0677450 | MtrunA17_Chr5g0432211 | 35.876 | 354 | 195 | 7 | 25 | 368 | 14 | 345 | 1.36e-61 | 201 |
| Msa0677450 | MtrunA17_Chr5g0432261 | 36.103 | 349 | 187 | 8 | 25 | 368 | 10 | 327 | 5.20e-61 | 199 |
| Msa0677450 | MtrunA17_Chr7g0219161 | 36.023 | 347 | 202 | 9 | 18 | 354 | 7 | 343 | 7.66e-61 | 199 |
| Msa0677450 | MtrunA17_Chr4g0040621 | 34.463 | 354 | 211 | 7 | 25 | 368 | 27 | 369 | 1.24e-60 | 199 |
| Msa0677450 | MtrunA17_Chr8g0367441 | 34.247 | 365 | 213 | 13 | 5 | 349 | 1 | 358 | 3.13e-59 | 196 |
| Msa0677450 | MtrunA17_Chr7g0223231 | 33.815 | 346 | 217 | 7 | 23 | 365 | 11 | 347 | 5.67e-58 | 192 |
| Msa0677450 | MtrunA17_Chr7g0223241 | 34.897 | 341 | 210 | 7 | 28 | 365 | 16 | 347 | 7.72e-58 | 191 |
| Msa0677450 | MtrunA17_Chr8g0367451 | 33.913 | 345 | 208 | 10 | 20 | 353 | 26 | 361 | 3.06e-57 | 191 |
| Msa0677450 | MtrunA17_Chr8g0367501 | 34.311 | 341 | 204 | 11 | 20 | 349 | 13 | 344 | 6.50e-57 | 191 |
| Msa0677450 | MtrunA17_Chr4g0046361 | 32.418 | 364 | 234 | 8 | 13 | 368 | 2 | 361 | 1.56e-56 | 188 |
| Msa0677450 | MtrunA17_Chr1g0188371 | 35.015 | 337 | 206 | 9 | 20 | 348 | 9 | 340 | 9.77e-56 | 187 |
| Msa0677450 | MtrunA17_Chr3g0085211 | 35.625 | 320 | 192 | 10 | 44 | 355 | 43 | 356 | 2.48e-55 | 186 |
| Msa0677450 | MtrunA17_Chr4g0014641 | 33.699 | 365 | 228 | 8 | 14 | 368 | 3 | 363 | 4.91e-55 | 184 |
| Msa0677450 | MtrunA17_Chr4g0046531 | 33.333 | 351 | 223 | 7 | 23 | 368 | 374 | 718 | 2.02e-52 | 185 |
| Msa0677450 | MtrunA17_Chr4g0046531 | 33.432 | 338 | 212 | 7 | 23 | 354 | 12 | 342 | 3.86e-51 | 181 |
| Msa0677450 | MtrunA17_Chr4g0014561 | 33.705 | 359 | 224 | 8 | 20 | 368 | 9 | 363 | 2.94e-52 | 177 |
| Msa0677450 | MtrunA17_Chr1g0163621 | 33.746 | 323 | 196 | 10 | 44 | 354 | 52 | 368 | 1.15e-51 | 176 |
| Msa0677450 | MtrunA17_Chr4g0046341 | 34.060 | 367 | 227 | 8 | 13 | 368 | 2 | 364 | 1.21e-51 | 176 |
| Msa0677450 | MtrunA17_Chr4g0014681 | 33.426 | 359 | 225 | 8 | 20 | 368 | 9 | 363 | 1.73e-51 | 175 |
| Msa0677450 | MtrunA17_Chr7g0218261 | 33.731 | 335 | 204 | 12 | 44 | 367 | 40 | 367 | 2.28e-51 | 175 |
| Msa0677450 | MtrunA17_Chr8g0367381 | 33.033 | 333 | 185 | 9 | 19 | 337 | 19 | 327 | 2.41e-51 | 174 |
| Msa0677450 | MtrunA17_Chr3g0130011 | 32.865 | 356 | 226 | 9 | 16 | 365 | 7 | 355 | 4.44e-51 | 174 |
| Msa0677450 | MtrunA17_Chr2g0307521 | 35.119 | 336 | 198 | 13 | 44 | 367 | 35 | 362 | 6.01e-51 | 174 |
| Msa0677450 | MtrunA17_Chr7g0218211 | 34.568 | 324 | 192 | 11 | 44 | 355 | 40 | 355 | 6.19e-51 | 174 |
| Msa0677450 | MtrunA17_Chr3g0085201 | 33.125 | 320 | 200 | 9 | 44 | 355 | 30 | 343 | 2.16e-50 | 172 |
| Msa0677450 | MtrunA17_Chr1g0163601 | 34.056 | 323 | 195 | 10 | 44 | 354 | 38 | 354 | 2.23e-50 | 172 |
| Msa0677450 | MtrunA17_Chr1g0163611 | 33.746 | 323 | 196 | 10 | 44 | 354 | 38 | 354 | 5.35e-50 | 171 |
| Msa0677450 | MtrunA17_Chr2g0314271 | 33.623 | 345 | 218 | 9 | 27 | 365 | 12 | 351 | 6.04e-50 | 171 |
| Msa0677450 | MtrunA17_Chr7g0218181 | 33.851 | 322 | 194 | 11 | 44 | 355 | 41 | 353 | 1.02e-49 | 171 |
| Msa0677450 | MtrunA17_Chr7g0218301 | 33.028 | 327 | 198 | 9 | 44 | 355 | 41 | 361 | 2.81e-49 | 170 |
| Msa0677450 | MtrunA17_Chr1g0200491 | 34.862 | 327 | 187 | 12 | 44 | 354 | 41 | 357 | 3.83e-49 | 169 |
| Msa0677450 | MtrunA17_Chr7g0218271 | 33.639 | 327 | 196 | 9 | 44 | 355 | 41 | 361 | 4.71e-49 | 169 |
| Msa0677450 | MtrunA17_Chr7g0218131 | 33.230 | 322 | 197 | 10 | 44 | 354 | 41 | 355 | 8.97e-48 | 166 |
| Msa0677450 | MtrunA17_Chr4g0014661 | 31.956 | 363 | 231 | 8 | 14 | 368 | 3 | 357 | 2.28e-46 | 162 |
| Msa0677450 | MtrunA17_Chr3g0130061 | 30.899 | 356 | 233 | 9 | 16 | 365 | 7 | 355 | 5.18e-46 | 160 |
| Msa0677450 | MtrunA17_Chr4g0014591 | 31.389 | 360 | 237 | 7 | 14 | 368 | 3 | 357 | 3.79e-43 | 153 |
| Msa0677450 | MtrunA17_Chr6g0482291 | 42.073 | 164 | 82 | 5 | 188 | 349 | 5 | 157 | 2.38e-37 | 132 |
| Msa0677450 | MtrunA17_Chr7g0219171 | 44.776 | 134 | 69 | 3 | 238 | 368 | 117 | 248 | 2.66e-31 | 119 |
| Msa0677450 | MtrunA17_Chr4g0014601 | 30.268 | 261 | 178 | 4 | 14 | 273 | 3 | 260 | 6.71e-29 | 113 |
| Msa0677450 | MtrunA17_Chr8g0367401 | 47.273 | 110 | 57 | 1 | 161 | 270 | 2 | 110 | 1.94e-28 | 108 |
| Msa0677450 | MtrunA17_Chr4g0011691 | 44.792 | 96 | 53 | 0 | 272 | 367 | 140 | 235 | 4.74e-25 | 102 |
| Msa0677450 | MtrunA17_Chr1g0170941 | 52.632 | 76 | 35 | 1 | 192 | 267 | 1 | 75 | 2.12e-20 | 84.3 |
| Msa0677450 | MtrunA17_Chr8g0367461 | 41.228 | 114 | 61 | 4 | 257 | 367 | 1 | 111 | 1.25e-19 | 83.6 |
| Msa0677450 | MtrunA17_Chr8g0367391 | 45.349 | 86 | 43 | 4 | 266 | 349 | 32 | 115 | 1.52e-15 | 72.8 |
| Msa0677450 | MtrunA17_Chr8g0367421 | 37.273 | 110 | 51 | 2 | 161 | 270 | 2 | 93 | 2.04e-15 | 72.0 |
| Msa0677450 | MtrunA17_Chr8g0367471 | 44.444 | 72 | 39 | 1 | 188 | 259 | 5 | 75 | 1.40e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677450 | AT5G54160.1 | 37.500 | 320 | 189 | 6 | 42 | 355 | 34 | 348 | 6.75e-74 | 234 |
| Msa0677450 | AT4G35160.1 | 37.017 | 362 | 207 | 6 | 22 | 367 | 24 | 380 | 2.55e-71 | 228 |
| Msa0677450 | AT1G77520.1 | 35.695 | 367 | 213 | 10 | 17 | 365 | 17 | 378 | 5.66e-63 | 206 |
| Msa0677450 | AT1G51990.1 | 32.970 | 367 | 220 | 12 | 16 | 368 | 8 | 362 | 1.38e-58 | 194 |
| Msa0677450 | AT4G35150.1 | 32.022 | 356 | 190 | 6 | 22 | 367 | 10 | 323 | 1.88e-58 | 192 |
| Msa0677450 | AT1G51990.2 | 32.698 | 367 | 221 | 12 | 16 | 368 | 8 | 362 | 4.14e-56 | 187 |
| Msa0677450 | AT1G63140.2 | 35.180 | 361 | 211 | 10 | 11 | 355 | 15 | 368 | 9.87e-55 | 184 |
| Msa0677450 | AT1G63140.4 | 35.180 | 361 | 211 | 10 | 11 | 355 | 35 | 388 | 1.71e-54 | 184 |
| Msa0677450 | AT1G77530.1 | 34.204 | 383 | 225 | 13 | 5 | 365 | 1 | 378 | 4.54e-54 | 183 |
| Msa0677450 | AT1G33030.1 | 35.913 | 323 | 186 | 12 | 44 | 354 | 23 | 336 | 4.77e-52 | 177 |
| Msa0677450 | AT5G53810.1 | 34.139 | 331 | 196 | 9 | 42 | 355 | 40 | 365 | 2.04e-50 | 173 |
| Msa0677450 | AT1G62900.1 | 45.550 | 191 | 100 | 3 | 167 | 355 | 4 | 192 | 6.87e-48 | 161 |
| Msa0677450 | AT1G21130.1 | 35.799 | 338 | 192 | 12 | 44 | 365 | 42 | 370 | 8.35e-48 | 166 |
| Msa0677450 | AT3G53140.1 | 32.857 | 350 | 219 | 10 | 27 | 365 | 12 | 356 | 1.11e-47 | 166 |
| Msa0677450 | AT1G21100.1 | 35.503 | 338 | 193 | 11 | 44 | 365 | 42 | 370 | 2.34e-47 | 165 |
| Msa0677450 | AT5G37170.2 | 36.052 | 233 | 142 | 5 | 138 | 365 | 1 | 231 | 1.14e-46 | 159 |
| Msa0677450 | AT1G21120.1 | 34.911 | 338 | 195 | 11 | 44 | 365 | 42 | 370 | 6.08e-46 | 161 |
| Msa0677450 | AT1G21110.1 | 34.320 | 338 | 197 | 11 | 44 | 365 | 42 | 370 | 1.55e-45 | 160 |
| Msa0677450 | AT5G37170.1 | 32.143 | 308 | 178 | 9 | 63 | 365 | 50 | 331 | 1.82e-45 | 159 |
| Msa0677450 | AT1G21120.2 | 34.911 | 338 | 195 | 11 | 44 | 365 | 90 | 418 | 2.62e-45 | 160 |
| Msa0677450 | AT1G76790.1 | 34.897 | 341 | 191 | 12 | 45 | 365 | 33 | 362 | 1.20e-44 | 157 |
| Msa0677450 | AT5G37170.3 | 39.560 | 182 | 105 | 4 | 187 | 365 | 4 | 183 | 1.71e-41 | 144 |
| Msa0677450 | AT1G33030.2 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 4.29e-28 | 111 |
| Msa0677450 | AT1G33030.3 | 34.599 | 237 | 138 | 9 | 44 | 270 | 23 | 252 | 8.67e-28 | 110 |
| Msa0677450 | AT1G63140.1 | 31.752 | 274 | 167 | 8 | 11 | 270 | 35 | 302 | 1.78e-27 | 110 |
| Msa0677450 | AT1G21130.2 | 34.025 | 241 | 137 | 10 | 44 | 270 | 42 | 274 | 5.49e-22 | 95.1 |
| Msa0677450 | AT1G63140.3 | 29.644 | 253 | 158 | 8 | 11 | 249 | 35 | 281 | 5.66e-18 | 83.6 |
| Msa0677450 | AT1G77530.2 | 30.566 | 265 | 160 | 11 | 5 | 249 | 1 | 261 | 6.60e-18 | 83.2 |
Find 90 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCTTCTGCCTTTA+AGG | 0.066983 | 4_4:+31214745 | Msa0677450:CDS |
| TTAAACAACTCATTGAATTT+TGG | 0.113417 | 4_4:-31218298 | None:intergenic |
| CATCAACCAATGTTTGAATT+TGG | 0.182200 | 4_4:-31218390 | None:intergenic |
| ATTTCACTCATAAAGTTAAA+AGG | 0.207818 | 4_4:-31218196 | None:intergenic |
| TGCTTGGACAAATTGAAATA+TGG | 0.256837 | 4_4:+31217852 | Msa0677450:CDS |
| TCAACATCCACGCACCTTAA+AGG | 0.284260 | 4_4:-31214759 | None:intergenic |
| AAAATGGCACTGCTTTCTTT+AGG | 0.298524 | 4_4:+31218236 | Msa0677450:CDS |
| ATGTGTTGTGTGACTTTACT+TGG | 0.299093 | 4_4:+31220375 | Msa0677450:three_prime_UTR |
| ATTAGTTAAGTGAAATAAAA+AGG | 0.312067 | 4_4:-31220600 | None:intergenic |
| GCTATGCCAATGTCAGTAAA+TGG | 0.312596 | 4_4:-31220145 | None:intergenic |
| GTTGATGTTGGTGGTGGTAT+TGG | 0.312678 | 4_4:+31218406 | Msa0677450:CDS |
| GCTTGACACGTGCATCAAAA+TGG | 0.313818 | 4_4:+31218104 | Msa0677450:CDS |
| CAACACTAGCCATTTCAAAT+TGG | 0.315929 | 4_4:-31218273 | None:intergenic |
| ATTCTGCACAATTTGAGTTA+AGG | 0.365186 | 4_4:-31217969 | None:intergenic |
| GTAAATGGTTCATCTCCTTC+TGG | 0.366037 | 4_4:-31220130 | None:intergenic |
| AACAGGAAAGGTGATAATAT+TGG | 0.375818 | 4_4:+31220093 | Msa0677450:CDS |
| GAAAATCATAATGAGTTTGT+TGG | 0.386525 | 4_4:+31220323 | Msa0677450:three_prime_UTR |
| GGCAGAAGGTGGAGAATGAT+TGG | 0.387813 | 4_4:-31214738 | None:intergenic |
| GTGTTTAGAGCTGTTATTGC+TGG | 0.403865 | 4_4:+31218349 | Msa0677450:CDS |
| AAAGGACAAGCATGCACAAC+TGG | 0.416268 | 4_4:+31218322 | Msa0677450:CDS |
| TGGTTATGACCAATTTGAAA+TGG | 0.426665 | 4_4:+31218264 | Msa0677450:CDS |
| GATAATATTGGATCATGTAT+TGG | 0.435063 | 4_4:+31220105 | Msa0677450:CDS |
| CTTAAAAGTAGAGTGGAATC+AGG | 0.438559 | 4_4:-31218010 | None:intergenic |
| ATGAGTGAAATTGTAAAAGA+AGG | 0.441259 | 4_4:+31218208 | Msa0677450:CDS |
| TTAAAAGGGTTCATATGAGT+TGG | 0.444485 | 4_4:-31218181 | None:intergenic |
| TTTCACTCATAAAGTTAAAA+GGG | 0.448814 | 4_4:-31218195 | None:intergenic |
| CTAACAGTGTAACAATTAGA+AGG | 0.449944 | 4_4:-31220628 | None:intergenic |
| ACTGCTTTCTTTAGGTGTCA+TGG | 0.450664 | 4_4:+31218244 | Msa0677450:CDS |
| ATGGGTGATGCCATCATACT+TGG | 0.452889 | 4_4:-31218512 | None:intergenic |
| TAAAAGGGTTCATATGAGTT+GGG | 0.453853 | 4_4:-31218180 | None:intergenic |
| CTCACACAACAATCTGCATA+TGG | 0.465615 | 4_4:-31220509 | None:intergenic |
| GTTATTGCTGGATACAAAGA+TGG | 0.468883 | 4_4:+31218361 | Msa0677450:CDS |
| GCAAATCAAAATTAATACCT+TGG | 0.471241 | 4_4:-31218468 | None:intergenic |
| AAGGCAATACCAGAGAAAAC+AGG | 0.476074 | 4_4:+31220076 | Msa0677450:CDS |
| AGGAAAGGACTGAAGAGAAC+TGG | 0.477263 | 4_4:+31220206 | Msa0677450:CDS |
| AAAAGTGACATTGGCACCAT+TGG | 0.485135 | 4_4:+31218141 | Msa0677450:CDS |
| GATGAACCATTTACTGACAT+TGG | 0.495764 | 4_4:+31220139 | Msa0677450:CDS |
| TGCACACAACTCTGGTGGTA+AGG | 0.502617 | 4_4:+31220186 | Msa0677450:CDS |
| GAACATGTCTCCTCCAACAT+GGG | 0.506646 | 4_4:-31218530 | None:intergenic |
| GATGTTGGTGGTGGTATTGG+CGG | 0.508464 | 4_4:+31218409 | Msa0677450:CDS |
| TTTAAGAGTAATGAGAGTAA+TGG | 0.509813 | 4_4:+31218027 | Msa0677450:CDS |
| AGATACTTATTCAAAGAGAC+AGG | 0.514708 | 4_4:+31220229 | Msa0677450:CDS |
| GGTAGTGGATTCTTCATGAC+TGG | 0.515619 | 4_4:+31220014 | Msa0677450:intron |
| ATTTAACCAAATTCAAACAT+TGG | 0.521052 | 4_4:+31218384 | Msa0677450:CDS |
| TTCAATGAGTTGTTTAACAA+AGG | 0.521127 | 4_4:+31218304 | Msa0677450:CDS |
| CTAGGGTGTGAGCAAGGAAG+AGG | 0.523226 | 4_4:+31217820 | Msa0677450:intron |
| CAAACATTGGTTGATGTTGG+TGG | 0.526942 | 4_4:+31218397 | Msa0677450:CDS |
| AGCTAGTTATGATTCATGCA+TGG | 0.529631 | 4_4:+31220471 | Msa0677450:three_prime_UTR |
| ATTCAAACATTGGTTGATGT+TGG | 0.530112 | 4_4:+31218394 | Msa0677450:CDS |
| TCTTCAATATCTTTATGCAA+TGG | 0.534210 | 4_4:-31220045 | None:intergenic |
| TAAAGATATTGAAGAACTGT+AGG | 0.535387 | 4_4:+31220053 | Msa0677450:CDS |
| TGCTGATGCTATTTACATCA+AGG | 0.535867 | 4_4:+31218567 | Msa0677450:CDS |
| CGAACATGTCTCCTCCAACA+TGG | 0.536309 | 4_4:-31218531 | None:intergenic |
| AATTAATACCTTGGATGTGA+GGG | 0.541352 | 4_4:-31218459 | None:intergenic |
| TCAACGGCACCCAAGTATGA+TGG | 0.541751 | 4_4:+31218502 | Msa0677450:CDS |
| AAGTAGAGTGGAATCAGGAG+AGG | 0.545001 | 4_4:-31218005 | None:intergenic |
| GAAGAGGAGGAATCATTGCT+TGG | 0.551152 | 4_4:+31217836 | Msa0677450:CDS |
| TTTGCCTCATGTTGTTTCAA+CGG | 0.559425 | 4_4:+31218486 | Msa0677450:CDS |
| AAATTAATACCTTGGATGTG+AGG | 0.559777 | 4_4:-31218460 | None:intergenic |
| GATGGCATCACCCATGTTGG+AGG | 0.561480 | 4_4:+31218520 | Msa0677450:CDS |
| GCTAGTTATGATTCATGCAT+GGG | 0.561936 | 4_4:+31220472 | Msa0677450:three_prime_UTR |
| ATATTGTTTGCACACAACTC+TGG | 0.563913 | 4_4:+31220178 | Msa0677450:CDS |
| TATGATGGCATCACCCATGT+TGG | 0.578808 | 4_4:+31218517 | Msa0677450:CDS |
| TTATTGAGATTATGATACAA+TGG | 0.586491 | 4_4:-31220428 | None:intergenic |
| ACAAGACACAAAAGTGACAT+TGG | 0.586673 | 4_4:+31218132 | Msa0677450:CDS |
| GGGTGTGAGCAAGGAAGAGG+AGG | 0.586759 | 4_4:+31217823 | Msa0677450:intron |
| CATTACTCTTAAAAGTAGAG+TGG | 0.588009 | 4_4:-31218017 | None:intergenic |
| ATGTAAATAGCATCAGCACT+AGG | 0.594614 | 4_4:-31218562 | None:intergenic |
| GATATTGAAGAACTGTAGGA+AGG | 0.597258 | 4_4:+31220057 | Msa0677450:CDS |
| TGAATCATAACTAGCTCTAG+AGG | 0.601190 | 4_4:-31220464 | None:intergenic |
| ACATTGGTTGATGTTGGTGG+TGG | 0.602342 | 4_4:+31218400 | Msa0677450:CDS |
| AGGATAGCGGTTTACACTGA+CGG | 0.604044 | 4_4:-31217949 | None:intergenic |
| AGTGTAACAATTAGAAGGAG+AGG | 0.608263 | 4_4:-31220623 | None:intergenic |
| CGCACCTTAAAGGCAGAAGG+TGG | 0.612114 | 4_4:-31214749 | None:intergenic |
| AGTAGAGTGGAATCAGGAGA+GGG | 0.613280 | 4_4:-31218004 | None:intergenic |
| AAAGCTTACCCTCACATCCA+AGG | 0.615664 | 4_4:+31218451 | Msa0677450:CDS |
| ACAACTCTGGTGGTAAGGAA+AGG | 0.616165 | 4_4:+31220191 | Msa0677450:CDS |
| AAATGACTAGGGTGTGAGCA+AGG | 0.619206 | 4_4:+31217814 | Msa0677450:intron |
| ACAATTTGAGTTAAGGATAG+CGG | 0.620633 | 4_4:-31217962 | None:intergenic |
| TTGTTTGCACACAACTCTGG+TGG | 0.628395 | 4_4:+31220181 | Msa0677450:CDS |
| CCACGCACCTTAAAGGCAGA+AGG | 0.632006 | 4_4:-31214752 | None:intergenic |
| GAAACCGGCGAAATTCTCTA+CGG | 0.639770 | 4_4:+31218082 | Msa0677450:CDS |
| GAATCATAACTAGCTCTAGA+GGG | 0.642526 | 4_4:-31220463 | None:intergenic |
| CAAGCCGTAGAGAATTTCGC+CGG | 0.643000 | 4_4:-31218086 | None:intergenic |
| GATCATGTATTGGATCCAGA+AGG | 0.647337 | 4_4:+31220115 | Msa0677450:CDS |
| TGAGTCTCTAGTAACACCAA+TGG | 0.648452 | 4_4:-31218157 | None:intergenic |
| TGGGTGATGCCATCATACTT+GGG | 0.669553 | 4_4:-31218511 | None:intergenic |
| AATACCAGAGAAAACAGGAA+AGG | 0.671132 | 4_4:+31220081 | Msa0677450:CDS |
| ACACACTAACAAGTCAACAG+TGG | 0.683258 | 4_4:-31220542 | None:intergenic |
| GGTGCCGTTGAAACAACATG+AGG | 0.720627 | 4_4:-31218490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATTAATTTTAAAA+AGG | - | chr4_4:31215587-31215606 | None:intergenic | 0.0% |
| !!! | AATATATAATTTTAAAATAT+TGG | - | chr4_4:31217607-31217626 | None:intergenic | 0.0% |
| !! | TTCAATATATATATATATAG+GGG | - | chr4_4:31215293-31215312 | None:intergenic | 10.0% |
| !! | GTTCAATATATATATATATA+GGG | - | chr4_4:31215294-31215313 | None:intergenic | 10.0% |
| !! | AGTTCAATATATATATATAT+AGG | - | chr4_4:31215295-31215314 | None:intergenic | 10.0% |
| !! | TTAAAAAAATCAATAATTTG+AGG | + | chr4_4:31215870-31215889 | Msa0677450:intron | 10.0% |
| !!! | TATAAATTTTATAGTTTTTG+CGG | + | chr4_4:31217037-31217056 | Msa0677450:intron | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | + | chr4_4:31217088-31217107 | Msa0677450:intron | 10.0% |
| !!! | ACAATTTCTTTTTTTTTTTA+GGG | - | chr4_4:31217664-31217683 | None:intergenic | 10.0% |
| !!! | TACAATTTCTTTTTTTTTTT+AGG | - | chr4_4:31217665-31217684 | None:intergenic | 10.0% |
| !! | AAGTAATGTATAAATTTAAT+TGG | - | chr4_4:31217756-31217775 | None:intergenic | 10.0% |
| !!! | GTTAATTCTATTTTATTATA+GGG | - | chr4_4:31219789-31219808 | None:intergenic | 10.0% |
| !!! | TGTTAATTCTATTTTATTAT+AGG | - | chr4_4:31219790-31219809 | None:intergenic | 10.0% |
| !! | AATAAAATAGAATTAACAAT+CGG | + | chr4_4:31219792-31219811 | Msa0677450:intron | 10.0% |
| !! | AATTAGGATTGTTAATTATT+TGG | - | chr4_4:31214865-31214884 | None:intergenic | 15.0% |
| !!! | ATAATTAACAATCCTAATTT+TGG | + | chr4_4:31214866-31214885 | Msa0677450:intron | 15.0% |
| !! | TATATATATATATTGAACTG+TGG | + | chr4_4:31215296-31215315 | Msa0677450:intron | 15.0% |
| !! | ATATAAGTAATATATGCATT+TGG | + | chr4_4:31215734-31215753 | Msa0677450:intron | 15.0% |
| !! | GAATTAAACATGAATTAAAT+TGG | - | chr4_4:31216958-31216977 | None:intergenic | 15.0% |
| !! | AACAAAACATGAATTAAATA+CGG | - | chr4_4:31217071-31217090 | None:intergenic | 15.0% |
| !!! | ACATGATTTGTTTTAAAAAT+AGG | + | chr4_4:31217172-31217191 | Msa0677450:intron | 15.0% |
| !!! | CATGATTTGTTTTAAAAATA+GGG | + | chr4_4:31217173-31217192 | Msa0677450:intron | 15.0% |
| !!! | AATGAAATTCACTAATTTTT+GGG | - | chr4_4:31217305-31217324 | None:intergenic | 15.0% |
| !!! | TAATGAAATTCACTAATTTT+TGG | - | chr4_4:31217306-31217325 | None:intergenic | 15.0% |
| !! | TGTTTGAAAAAAAATATTAG+AGG | + | chr4_4:31217544-31217563 | Msa0677450:intron | 15.0% |
| !! | TATAAACTGTGATTAATAAT+GGG | - | chr4_4:31217795-31217814 | None:intergenic | 15.0% |
| !! | TTATAAACTGTGATTAATAA+TGG | - | chr4_4:31217796-31217815 | None:intergenic | 15.0% |
| !! | TACTAAATATACGTTATAAA+TGG | + | chr4_4:31218764-31218783 | Msa0677450:intron | 15.0% |
| !!! | AAATACGTCTTTTAAATTTT+AGG | + | chr4_4:31218967-31218986 | Msa0677450:intron | 15.0% |
| !!! | GAACTCATAATAATTTTATT+GGG | - | chr4_4:31219117-31219136 | None:intergenic | 15.0% |
| !!! | TGAACTCATAATAATTTTAT+TGG | - | chr4_4:31219118-31219137 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr4_4:31219423-31219442 | None:intergenic | 15.0% |
| !! | AAATTATCCATATTAACTAT+TGG | - | chr4_4:31219447-31219466 | None:intergenic | 15.0% |
| !! | AATAGTTAATATGGATAATT+TGG | + | chr4_4:31219446-31219465 | Msa0677450:intron | 15.0% |
| !!! | TGTTTTTTTAACTAGTATTT+TGG | + | chr4_4:31219666-31219685 | Msa0677450:intron | 15.0% |
| !!! | GTTTTTTTAACTAGTATTTT+GGG | + | chr4_4:31219667-31219686 | Msa0677450:intron | 15.0% |
| !!! | AAGCCTTTATTTTATTTTTT+CGG | - | chr4_4:31219750-31219769 | None:intergenic | 15.0% |
| !! | TAGAATTAGTTGAATATTAA+CGG | + | chr4_4:31219912-31219931 | Msa0677450:intron | 15.0% |
| !! | GTCTAACTATAAATATAAAA+TGG | + | chr4_4:31219934-31219953 | Msa0677450:intron | 15.0% |
| !! | ATTAGTTAAGTGAAATAAAA+AGG | - | chr4_4:31220603-31220622 | None:intergenic | 15.0% |
| !! | TTCTAACAATAAATCTTGAT+TGG | + | chr4_4:31216046-31216065 | Msa0677450:intron | 20.0% |
| !! | ATTATCACTTATGTATCATT+GGG | + | chr4_4:31216171-31216190 | Msa0677450:intron | 20.0% |
| !! | ATATATGCATATGAAGAAAA+AGG | + | chr4_4:31216266-31216285 | Msa0677450:intron | 20.0% |
| !!! | TGGTGATTGTAAATTTTATA+GGG | + | chr4_4:31217204-31217223 | Msa0677450:intron | 20.0% |
| !! | TTAGTGAATTTCATTAAGAT+AGG | + | chr4_4:31217310-31217329 | Msa0677450:intron | 20.0% |
| !! | ACAAAAGATGATACATTTAT+AGG | - | chr4_4:31217440-31217459 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCATTGATAA+AGG | - | chr4_4:31217496-31217515 | None:intergenic | 20.0% |
| !! | TTTCACTCATAAAGTTAAAA+GGG | - | chr4_4:31218198-31218217 | None:intergenic | 20.0% |
| !! | ATTTCACTCATAAAGTTAAA+AGG | - | chr4_4:31218199-31218218 | None:intergenic | 20.0% |
| !!! | TAAACAACTCATTGAATTTT+GGG | - | chr4_4:31218300-31218319 | None:intergenic | 20.0% |
| !!! | TTAAACAACTCATTGAATTT+TGG | - | chr4_4:31218301-31218320 | None:intergenic | 20.0% |
| !! | ATTTAACCAAATTCAAACAT+TGG | + | chr4_4:31218384-31218403 | Msa0677450:CDS | 20.0% |
| !! | AAAAAAAATCCAAAAGTTTG+TGG | - | chr4_4:31219056-31219075 | None:intergenic | 20.0% |
| !!! | ATAATAATTTTATTGGGTGA+TGG | - | chr4_4:31219111-31219130 | None:intergenic | 20.0% |
| !! | AAAGAGAAAAATGTAGTATT+AGG | - | chr4_4:31219235-31219254 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+TGG | + | chr4_4:31219437-31219456 | Msa0677450:intron | 20.0% |
| !!! | AATATATAAGTTTTGCATTG+AGG | - | chr4_4:31219638-31219657 | None:intergenic | 20.0% |
| !! | TACCCGAAAAAATAAAATAA+AGG | + | chr4_4:31219744-31219763 | Msa0677450:intron | 20.0% |
| !!! | AGCCTTTATTTTATTTTTTC+GGG | - | chr4_4:31219749-31219768 | None:intergenic | 20.0% |
| !!! | AATGAATATTTTTGTGTGAA+TGG | + | chr4_4:31219992-31220011 | Msa0677450:intron | 20.0% |
| !!! | ATGAATATTTTTGTGTGAAT+GGG | + | chr4_4:31219993-31220012 | Msa0677450:intron | 20.0% |
| !!! | TATGATTTTCGAATTTAGAT+TGG | - | chr4_4:31220313-31220332 | None:intergenic | 20.0% |
| !! | TTATTGAGATTATGATACAA+TGG | - | chr4_4:31220431-31220450 | None:intergenic | 20.0% |
| !!! | CACACACTAAACATATTTTT+TGG | + | chr4_4:31214809-31214828 | Msa0677450:intron | 25.0% |
| !! | ACTCTTTCTAAAAAGTAAGT+GGG | - | chr4_4:31214940-31214959 | None:intergenic | 25.0% |
| !! | TACTCTTTCTAAAAAGTAAG+TGG | - | chr4_4:31214941-31214960 | None:intergenic | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr4_4:31215196-31215215 | Msa0677450:intron | 25.0% |
| ! | TCATTATTTGTGTTTGCTTT+AGG | - | chr4_4:31215562-31215581 | None:intergenic | 25.0% |
| ! | TAACAAAATCAACACTTTCA+TGG | + | chr4_4:31215782-31215801 | Msa0677450:intron | 25.0% |
| ! | TATTGATGTGATATTAAGAG+AGG | + | chr4_4:31215943-31215962 | Msa0677450:intron | 25.0% |
| ! | GATTATCACTTATGTATCAT+TGG | + | chr4_4:31216170-31216189 | Msa0677450:intron | 25.0% |
| ! | CTATTGAGATACTAATACAA+TGG | - | chr4_4:31216300-31216319 | None:intergenic | 25.0% |
| ! | CTGACAATATGTTTATAAGT+GGG | + | chr4_4:31216830-31216849 | Msa0677450:intron | 25.0% |
| ! | TGACAATATGTTTATAAGTG+GGG | + | chr4_4:31216831-31216850 | Msa0677450:intron | 25.0% |
| !!! | CTCTGATTTGTTGAAAATTA+GGG | - | chr4_4:31216900-31216919 | None:intergenic | 25.0% |
| ! | ATGTTTAATTCCGTATTCTA+AGG | + | chr4_4:31216967-31216986 | Msa0677450:intron | 25.0% |
| ! | TTAAAAATAGGGATCAAAAG+TGG | + | chr4_4:31217184-31217203 | Msa0677450:intron | 25.0% |
| !! | GTGGTGATTGTAAATTTTAT+AGG | + | chr4_4:31217203-31217222 | Msa0677450:intron | 25.0% |
| !! | ACTAAGTCGAATGAAAATTT+TGG | + | chr4_4:31217227-31217246 | Msa0677450:intron | 25.0% |
| ! | AGGATTATAAACTACTTTCA+TGG | - | chr4_4:31217420-31217439 | None:intergenic | 25.0% |
| !! | TTTTTAATCCCTCTATACAA+TGG | + | chr4_4:31217459-31217478 | Msa0677450:intron | 25.0% |
| ! | AAAAAAACGAACGTAAAAAG+TGG | + | chr4_4:31217567-31217586 | Msa0677450:intron | 25.0% |
| !!! | TTTGTATTCCTTTAAAGTAG+AGG | + | chr4_4:31217690-31217709 | Msa0677450:intron | 25.0% |
| !!! | TTGTATTCCTTTAAAGTAGA+GGG | + | chr4_4:31217691-31217710 | Msa0677450:intron | 25.0% |
| !! | TTTTTACCTTTTTGTGGATT+TGG | - | chr4_4:31217718-31217737 | None:intergenic | 25.0% |
| ! | ATCACAGTTTATAAATGACT+AGG | + | chr4_4:31217802-31217821 | Msa0677450:intron | 25.0% |
| ! | TCACAGTTTATAAATGACTA+GGG | + | chr4_4:31217803-31217822 | Msa0677450:intron | 25.0% |
| ! | TTTAAGAGTAATGAGAGTAA+TGG | + | chr4_4:31218027-31218046 | Msa0677450:CDS | 25.0% |
| ! | ATGAGTGAAATTGTAAAAGA+AGG | + | chr4_4:31218208-31218227 | Msa0677450:CDS | 25.0% |
| ! | TTCAATGAGTTGTTTAACAA+AGG | + | chr4_4:31218304-31218323 | Msa0677450:CDS | 25.0% |
| ! | GCAAATCAAAATTAATACCT+TGG | - | chr4_4:31218471-31218490 | None:intergenic | 25.0% |
| !!! | AAAATCCATCGATTTTGATT+GGG | - | chr4_4:31218730-31218749 | None:intergenic | 25.0% |
| !!! | TAAAATCCATCGATTTTGAT+TGG | - | chr4_4:31218731-31218750 | None:intergenic | 25.0% |
| !! | TCGATGAATTTTGTCTATTT+TGG | + | chr4_4:31218840-31218859 | Msa0677450:intron | 25.0% |
| !! | CGATGAATTTTGTCTATTTT+GGG | + | chr4_4:31218841-31218860 | Msa0677450:intron | 25.0% |
| !!! | CTGAATTTTAGGATTTAAGT+CGG | + | chr4_4:31218912-31218931 | Msa0677450:intron | 25.0% |
| !!! | TGAATTTTAGGATTTAAGTC+GGG | + | chr4_4:31218913-31218932 | Msa0677450:intron | 25.0% |
| !!! | AGTGACATTTATTTTGAAAC+TGG | - | chr4_4:31219329-31219348 | None:intergenic | 25.0% |
| ! | AATGAGTAAAAGAAAGAGAA+TGG | - | chr4_4:31219480-31219499 | None:intergenic | 25.0% |
| ! | AATGAGAGTCAAATACATAT+AGG | - | chr4_4:31219586-31219605 | None:intergenic | 25.0% |
| ! | TCTTCAATATCTTTATGCAA+TGG | - | chr4_4:31220048-31220067 | None:intergenic | 25.0% |
| ! | TAAAGATATTGAAGAACTGT+AGG | + | chr4_4:31220053-31220072 | Msa0677450:CDS | 25.0% |
| ! | GATAATATTGGATCATGTAT+TGG | + | chr4_4:31220105-31220124 | Msa0677450:CDS | 25.0% |
| ! | GAAAATCATAATGAGTTTGT+TGG | + | chr4_4:31220323-31220342 | Msa0677450:three_prime_UTR | 25.0% |
| ACAATACTAAGGCCAAAATT+AGG | - | chr4_4:31214881-31214900 | None:intergenic | 30.0% | |
| GCAAGTGAATAACTAAAAAG+TGG | + | chr4_4:31214966-31214985 | Msa0677450:intron | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr4_4:31215082-31215101 | None:intergenic | 30.0% | |
| ACCTTCTAACAAAAACAAGT+GGG | + | chr4_4:31215105-31215124 | Msa0677450:intron | 30.0% | |
| ! | AAGAACTTTTGCAGTTAATG+TGG | - | chr4_4:31215368-31215387 | None:intergenic | 30.0% |
| TAACTGCAAAAGTTCTTCTA+TGG | + | chr4_4:31215371-31215390 | Msa0677450:intron | 30.0% | |
| ! | GGGTATAATTGTTGTTAAGA+AGG | + | chr4_4:31215396-31215415 | Msa0677450:intron | 30.0% |
| TATCGTCTCAATCAATATAG+CGG | + | chr4_4:31215536-31215555 | Msa0677450:intron | 30.0% | |
| TTAATGCATCACATTCACAA+AGG | + | chr4_4:31216148-31216167 | Msa0677450:intron | 30.0% | |
| AAGTGATATCCCATCATAAA+TGG | + | chr4_4:31216325-31216344 | Msa0677450:intron | 30.0% | |
| CTTGATGAGAGTTTATAAAG+AGG | + | chr4_4:31216407-31216426 | Msa0677450:intron | 30.0% | |
| CCACTTATAAACATATTGTC+AGG | - | chr4_4:31216832-31216851 | None:intergenic | 30.0% | |
| CCTGACAATATGTTTATAAG+TGG | + | chr4_4:31216829-31216848 | Msa0677450:intron | 30.0% | |
| GACAATATGTTTATAAGTGG+GGG | + | chr4_4:31216832-31216851 | Msa0677450:intron | 30.0% | |
| CTAACTCTTCCTTACAAAAT+CGG | - | chr4_4:31216876-31216895 | None:intergenic | 30.0% | |
| !! | GCTCTGATTTGTTGAAAATT+AGG | - | chr4_4:31216901-31216920 | None:intergenic | 30.0% |
| AATTAAATTGGTGCGTGAAT+AGG | - | chr4_4:31216946-31216965 | None:intergenic | 30.0% | |
| !! | TTTAGCTCTTCCTTAGAATA+CGG | - | chr4_4:31216980-31216999 | None:intergenic | 30.0% |
| ! | AAGTCGAATGAAAATTTTGG+AGG | + | chr4_4:31217230-31217249 | Msa0677450:intron | 30.0% |
| ! | AGTCGAATGAAAATTTTGGA+GGG | + | chr4_4:31217231-31217250 | Msa0677450:intron | 30.0% |
| ATCCACAAAAAGGTAAAAAC+TGG | + | chr4_4:31217719-31217738 | Msa0677450:intron | 30.0% | |
| TCCACAAAAAGGTAAAAACT+GGG | + | chr4_4:31217720-31217739 | Msa0677450:intron | 30.0% | |
| ! | AACTGTGATTAATAATGGGA+TGG | - | chr4_4:31217791-31217810 | None:intergenic | 30.0% |
| TGCTTGGACAAATTGAAATA+TGG | + | chr4_4:31217852-31217871 | Msa0677450:CDS | 30.0% | |
| ! | ACAATTTGAGTTAAGGATAG+CGG | - | chr4_4:31217965-31217984 | None:intergenic | 30.0% |
| ! | ATTCTGCACAATTTGAGTTA+AGG | - | chr4_4:31217972-31217991 | None:intergenic | 30.0% |
| CATTACTCTTAAAAGTAGAG+TGG | - | chr4_4:31218020-31218039 | None:intergenic | 30.0% | |
| TAAAAGGGTTCATATGAGTT+GGG | - | chr4_4:31218183-31218202 | None:intergenic | 30.0% | |
| TTAAAAGGGTTCATATGAGT+TGG | - | chr4_4:31218184-31218203 | None:intergenic | 30.0% | |
| ! | GTAAAAGAAGGCACAAAAAA+TGG | + | chr4_4:31218220-31218239 | Msa0677450:CDS | 30.0% |
| TGGTTATGACCAATTTGAAA+TGG | + | chr4_4:31218264-31218283 | Msa0677450:CDS | 30.0% | |
| CATCAACCAATGTTTGAATT+TGG | - | chr4_4:31218393-31218412 | None:intergenic | 30.0% | |
| ! | ATTCAAACATTGGTTGATGT+TGG | + | chr4_4:31218394-31218413 | Msa0677450:CDS | 30.0% |
| AATTAATACCTTGGATGTGA+GGG | - | chr4_4:31218462-31218481 | None:intergenic | 30.0% | |
| AAATTAATACCTTGGATGTG+AGG | - | chr4_4:31218463-31218482 | None:intergenic | 30.0% | |
| ATGATCGTATATACTAACCA+AGG | + | chr4_4:31218614-31218633 | Msa0677450:intron | 30.0% | |
| TAACCAAGGTTATCAAAATC+AGG | + | chr4_4:31218628-31218647 | Msa0677450:intron | 30.0% | |
| AAAATCGCATTCAAAATCGA+AGG | + | chr4_4:31218657-31218676 | Msa0677450:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | chr4_4:31218670-31218689 | Msa0677450:intron | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | chr4_4:31218692-31218711 | Msa0677450:intron | 30.0% |
| AAAATCCCAATCAAAATCGA+TGG | + | chr4_4:31218722-31218741 | Msa0677450:intron | 30.0% | |
| !!! | TCTATTTTGGGATTCTACTA+TGG | + | chr4_4:31218853-31218872 | Msa0677450:intron | 30.0% |
| CGACTTAAATCCTAAAATTC+AGG | - | chr4_4:31218914-31218933 | None:intergenic | 30.0% | |
| ! | TGTTATAGATAGTTTGAGAC+AGG | + | chr4_4:31218993-31219012 | Msa0677450:intron | 30.0% |
| ! | GTTATAGATAGTTTGAGACA+GGG | + | chr4_4:31218994-31219013 | Msa0677450:intron | 30.0% |
| ! | TTATAGATAGTTTGAGACAG+GGG | + | chr4_4:31218995-31219014 | Msa0677450:intron | 30.0% |
| AAAAATCCAAAAGTTTGTGG+AGG | - | chr4_4:31219053-31219072 | None:intergenic | 30.0% | |
| !! | AAGTGACACTCATTTTGAAA+CGG | - | chr4_4:31219303-31219322 | None:intergenic | 30.0% |
| ! | TGTGTAGAGTATTAATTGGA+TGG | - | chr4_4:31219394-31219413 | None:intergenic | 30.0% |
| ! | GTAGTGTGTAGAGTATTAAT+TGG | - | chr4_4:31219398-31219417 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr4_4:31219526-31219545 | None:intergenic | 30.0% |
| AACAGGAAAGGTGATAATAT+TGG | + | chr4_4:31220093-31220112 | Msa0677450:CDS | 30.0% | |
| AGATACTTATTCAAAGAGAC+AGG | + | chr4_4:31220229-31220248 | Msa0677450:CDS | 30.0% | |
| !!! | TTTTGATGATGTTGTAACGA+GGG | - | chr4_4:31220258-31220277 | None:intergenic | 30.0% |
| !!! | ATTTTGATGATGTTGTAACG+AGG | - | chr4_4:31220259-31220278 | None:intergenic | 30.0% |
| !!! | GACTTTTGTTTTGTTAGCTA+AGG | + | chr4_4:31220397-31220416 | Msa0677450:three_prime_UTR | 30.0% |
| CGCAATTTAGCACAATACTA+AGG | - | chr4_4:31214892-31214911 | None:intergenic | 35.0% | |
| TAAATTGCGCTTATGAGAAG+TGG | + | chr4_4:31214903-31214922 | Msa0677450:intron | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr4_4:31214983-31215002 | Msa0677450:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr4_4:31215001-31215020 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr4_4:31215002-31215021 | None:intergenic | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_4:31215023-31215042 | Msa0677450:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_4:31215164-31215183 | None:intergenic | 35.0% |
| GTTATAGCAACATACACCTT+AGG | - | chr4_4:31215083-31215102 | None:intergenic | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | + | chr4_4:31215104-31215123 | Msa0677450:intron | 35.0% | |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | - | chr4_4:31215109-31215128 | None:intergenic | 35.0% |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr4_4:31215128-31215147 | Msa0677450:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr4_4:31215164-31215183 | Msa0677450:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr4_4:31215023-31215042 | None:intergenic | 35.0% | |
| AAAGTGGTTAATTACACCCT+AGG | + | chr4_4:31215212-31215231 | Msa0677450:intron | 35.0% | |
| AAGTGGTTAATTACACCCTA+GGG | + | chr4_4:31215213-31215232 | Msa0677450:intron | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | + | chr4_4:31215023-31215042 | Msa0677450:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | chr4_4:31215164-31215183 | None:intergenic | 35.0% |
| TGCAAAAGTTCTTCTATGGA+AGG | + | chr4_4:31215375-31215394 | Msa0677450:intron | 35.0% | |
| GCAAAAGTTCTTCTATGGAA+GGG | + | chr4_4:31215376-31215395 | Msa0677450:intron | 35.0% | |
| ! | CTTTCTCTCACTTTGTTTCA+AGG | - | chr4_4:31215482-31215501 | None:intergenic | 35.0% |
| CAAAGTGAGAGAAAGAGAAA+AGG | + | chr4_4:31215487-31215506 | Msa0677450:intron | 35.0% | |
| ! | GTCTAAAGCAAGAGCTTTAT+TGG | + | chr4_4:31215892-31215911 | Msa0677450:intron | 35.0% |
| TCTTCCTTAGATTGATTACG+TGG | - | chr4_4:31216234-31216253 | None:intergenic | 35.0% | |
| TAAGTGGAGCCATTTATGAT+GGG | - | chr4_4:31216337-31216356 | None:intergenic | 35.0% | |
| ATAAGTGGAGCCATTTATGA+TGG | - | chr4_4:31216338-31216357 | None:intergenic | 35.0% | |
| ! | TCCACTTATGTGGTTTGTAT+TGG | + | chr4_4:31216349-31216368 | Msa0677450:intron | 35.0% |
| ! | CCACTTATGTGGTTTGTATT+GGG | + | chr4_4:31216350-31216369 | Msa0677450:intron | 35.0% |
| GATGAGAGTTTATAAAGAGG+AGG | + | chr4_4:31216410-31216429 | Msa0677450:intron | 35.0% | |
| TGATACCATCTTAGAAATCG+TGG | - | chr4_4:31216483-31216502 | None:intergenic | 35.0% | |
| ! | CGATTTTGTAAGGAAGAGTT+AGG | + | chr4_4:31216874-31216893 | Msa0677450:intron | 35.0% |
| GTATACTCCACAACATTATG+AGG | + | chr4_4:31217332-31217351 | Msa0677450:intron | 35.0% | |
| AGTTGTTCCTCATAATGTTG+TGG | - | chr4_4:31217342-31217361 | None:intergenic | 35.0% | |
| ATTTGGTCCCTCTACTTTAA+AGG | - | chr4_4:31217701-31217720 | None:intergenic | 35.0% | |
| ! | TCCCAGTTTTTACCTTTTTG+TGG | - | chr4_4:31217724-31217743 | None:intergenic | 35.0% |
| !!! | TTTTGCTCTAAAAGCAGTTG+TGG | + | chr4_4:31217901-31217920 | Msa0677450:CDS | 35.0% |
| CTTAAAAGTAGAGTGGAATC+AGG | - | chr4_4:31218013-31218032 | None:intergenic | 35.0% | |
| AGTGCAGAAAAATCAGAAAC+CGG | + | chr4_4:31218067-31218086 | Msa0677450:CDS | 35.0% | |
| ACAAGACACAAAAGTGACAT+TGG | + | chr4_4:31218132-31218151 | Msa0677450:CDS | 35.0% | |
| AAAATGGCACTGCTTTCTTT+AGG | + | chr4_4:31218236-31218255 | Msa0677450:CDS | 35.0% | |
| CAACACTAGCCATTTCAAAT+TGG | - | chr4_4:31218276-31218295 | None:intergenic | 35.0% | |
| GTTATTGCTGGATACAAAGA+TGG | + | chr4_4:31218361-31218380 | Msa0677450:CDS | 35.0% | |
| !! | TTTGCCTCATGTTGTTTCAA+CGG | + | chr4_4:31218486-31218505 | Msa0677450:CDS | 35.0% |
| ATGTAAATAGCATCAGCACT+AGG | - | chr4_4:31218565-31218584 | None:intergenic | 35.0% | |
| ! | TGCTGATGCTATTTACATCA+AGG | + | chr4_4:31218567-31218586 | Msa0677450:CDS | 35.0% |
| !! | AGTCCTGATTTTGATAACCT+TGG | - | chr4_4:31218634-31218653 | None:intergenic | 35.0% |
| CTATGGATTTAAGTCGTTGA+TGG | + | chr4_4:31218870-31218889 | Msa0677450:intron | 35.0% | |
| ! | GTCGCAAAATCCTGAATTTT+AGG | + | chr4_4:31218901-31218920 | Msa0677450:intron | 35.0% |
| TGTTTACTCATATAGGAGCT+TGG | - | chr4_4:31219557-31219576 | None:intergenic | 35.0% | |
| GAGCTTGTGTTTACTCATAT+AGG | - | chr4_4:31219564-31219583 | None:intergenic | 35.0% | |
| !! | AGCCAGAAATTTTGAGAAGT+GGG | - | chr4_4:31219870-31219889 | None:intergenic | 35.0% |
| !! | TAGCCAGAAATTTTGAGAAG+TGG | - | chr4_4:31219871-31219890 | None:intergenic | 35.0% |
| ! | ATTTTTGTGTGAATGGGTAG+TGG | + | chr4_4:31219999-31220018 | Msa0677450:intron | 35.0% |
| GATATTGAAGAACTGTAGGA+AGG | + | chr4_4:31220057-31220076 | Msa0677450:CDS | 35.0% | |
| AATACCAGAGAAAACAGGAA+AGG | + | chr4_4:31220081-31220100 | Msa0677450:CDS | 35.0% | |
| GATGAACCATTTACTGACAT+TGG | + | chr4_4:31220139-31220158 | Msa0677450:CDS | 35.0% | |
| ATATTGTTTGCACACAACTC+TGG | + | chr4_4:31220178-31220197 | Msa0677450:CDS | 35.0% | |
| ATGTGTTGTGTGACTTTACT+TGG | + | chr4_4:31220375-31220394 | Msa0677450:three_prime_UTR | 35.0% | |
| !! | GAATCATAACTAGCTCTAGA+GGG | - | chr4_4:31220466-31220485 | None:intergenic | 35.0% |
| !! | TGAATCATAACTAGCTCTAG+AGG | - | chr4_4:31220467-31220486 | None:intergenic | 35.0% |
| AGCTAGTTATGATTCATGCA+TGG | + | chr4_4:31220471-31220490 | Msa0677450:three_prime_UTR | 35.0% | |
| GCTAGTTATGATTCATGCAT+GGG | + | chr4_4:31220472-31220491 | Msa0677450:three_prime_UTR | 35.0% | |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_4:31215022-31215041 | Msa0677450:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_4:31215163-31215182 | None:intergenic | 40.0% |
| GTGTTCTAGCAAATGCCTAT+AGG | - | chr4_4:31215146-31215165 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr4_4:31215163-31215182 | Msa0677450:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr4_4:31215022-31215041 | None:intergenic | 40.0% | |
| TTTAGCAAAGCTACACCCTA+GGG | - | chr4_4:31215231-31215250 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAGCTACACCCT+AGG | - | chr4_4:31215232-31215251 | None:intergenic | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | + | chr4_4:31215022-31215041 | Msa0677450:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | chr4_4:31215163-31215182 | None:intergenic | 40.0% |
| CAACAATCTTGTAATGTGCG+CGG | - | chr4_4:31215811-31215830 | None:intergenic | 40.0% | |
| !! | CAAGAGCTTTATTGGCCTAA+TGG | + | chr4_4:31215900-31215919 | Msa0677450:intron | 40.0% |
| CATAAATGGCTCCACTTATG+TGG | + | chr4_4:31216339-31216358 | Msa0677450:intron | 40.0% | |
| CCCAATACAAACCACATAAG+TGG | - | chr4_4:31216353-31216372 | None:intergenic | 40.0% | |
| CCATCTTAGAAATCGTGGTT+GGG | - | chr4_4:31216478-31216497 | None:intergenic | 40.0% | |
| ACCATCTTAGAAATCGTGGT+TGG | - | chr4_4:31216479-31216498 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | + | chr4_4:31216913-31216932 | Msa0677450:intron | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | + | chr4_4:31216914-31216933 | Msa0677450:intron | 40.0% | |
| AAATTGGTGCGTGAATAGGT+AGG | - | chr4_4:31216942-31216961 | None:intergenic | 40.0% | |
| TGAGGAACAACTCACAACAA+TGG | + | chr4_4:31217350-31217369 | Msa0677450:intron | 40.0% | |
| GAGGAACAACTCACAACAAT+GGG | + | chr4_4:31217351-31217370 | Msa0677450:intron | 40.0% | |
| CACACATGCCATTGTATAGA+GGG | - | chr4_4:31217470-31217489 | None:intergenic | 40.0% | |
| AAAAGTGACATTGGCACCAT+TGG | + | chr4_4:31218141-31218160 | Msa0677450:CDS | 40.0% | |
| TGAGTCTCTAGTAACACCAA+TGG | - | chr4_4:31218160-31218179 | None:intergenic | 40.0% | |
| ACTGCTTTCTTTAGGTGTCA+TGG | + | chr4_4:31218244-31218263 | Msa0677450:CDS | 40.0% | |
| ! | GTGTTTAGAGCTGTTATTGC+TGG | + | chr4_4:31218349-31218368 | Msa0677450:CDS | 40.0% |
| ! | CAAACATTGGTTGATGTTGG+TGG | + | chr4_4:31218397-31218416 | Msa0677450:CDS | 40.0% |
| TGTTAGTGTGTAACGTGTGT+GGG | - | chr4_4:31219151-31219170 | None:intergenic | 40.0% | |
| ATGTTAGTGTGTAACGTGTG+TGG | - | chr4_4:31219152-31219171 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_4:31219299-31219318 | None:intergenic | 40.0% |
| !!! | TGACACTCATTTTGAAACGG+AGG | - | chr4_4:31219300-31219319 | None:intergenic | 40.0% |
| TTGAGGAACACTGCTCATAT+GGG | - | chr4_4:31219621-31219640 | None:intergenic | 40.0% | |
| ATTGAGGAACACTGCTCATA+TGG | - | chr4_4:31219622-31219641 | None:intergenic | 40.0% | |
| !! | CCAGAAATTTTGAGAAGTGG+GGG | - | chr4_4:31219868-31219887 | None:intergenic | 40.0% |
| !! | GCCAGAAATTTTGAGAAGTG+GGG | - | chr4_4:31219869-31219888 | None:intergenic | 40.0% |
| TCTAACACATCTCAAACCAG+TGG | - | chr4_4:31219896-31219915 | None:intergenic | 40.0% | |
| AAGGCAATACCAGAGAAAAC+AGG | + | chr4_4:31220076-31220095 | Msa0677450:CDS | 40.0% | |
| ! | ATCACCTTTCCTGTTTTCTC+TGG | - | chr4_4:31220088-31220107 | None:intergenic | 40.0% |
| GATCATGTATTGGATCCAGA+AGG | + | chr4_4:31220115-31220134 | Msa0677450:CDS | 40.0% | |
| GTAAATGGTTCATCTCCTTC+TGG | - | chr4_4:31220133-31220152 | None:intergenic | 40.0% | |
| GCTATGCCAATGTCAGTAAA+TGG | - | chr4_4:31220148-31220167 | None:intergenic | 40.0% | |
| CTCACACAACAATCTGCATA+TGG | - | chr4_4:31220512-31220531 | None:intergenic | 40.0% | |
| ACACACTAACAAGTCAACAG+TGG | - | chr4_4:31220545-31220564 | None:intergenic | 40.0% | |
| TTCTCCACCTTCTGCCTTTA+AGG | + | chr4_4:31214745-31214764 | Msa0677450:CDS | 45.0% | |
| TCAACATCCACGCACCTTAA+AGG | - | chr4_4:31214762-31214781 | None:intergenic | 45.0% | |
| TAGGGTGTGTGTGTGTGTAT+GGG | - | chr4_4:31215064-31215083 | None:intergenic | 45.0% | |
| TTAGGGTGTGTGTGTGTGTA+TGG | - | chr4_4:31215065-31215084 | None:intergenic | 45.0% | |
| ATACACACACACACACCCTA+AGG | + | chr4_4:31215064-31215083 | Msa0677450:intron | 45.0% | |
| GAGTGTCTCAAGCAACCATT+AGG | - | chr4_4:31215918-31215937 | None:intergenic | 45.0% | |
| TGCGCCACGTAATCAATCTA+AGG | + | chr4_4:31216227-31216246 | Msa0677450:intron | 45.0% | |
| GAAAAACCCAAGTCCCACAT+CGG | + | chr4_4:31216372-31216391 | Msa0677450:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4_4:31216454-31216473 | None:intergenic | 45.0% | |
| ! | CCCAACCACGATTTCTAAGA+TGG | + | chr4_4:31216475-31216494 | Msa0677450:intron | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | + | chr4_4:31216531-31216550 | Msa0677450:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr4_4:31216561-31216580 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | - | chr4_4:31216562-31216581 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr4_4:31216565-31216584 | None:intergenic | 45.0% |
| ! | TTAAGAGTCCCACATCGACT+GGG | + | chr4_4:31216613-31216632 | Msa0677450:intron | 45.0% |
| TGCTATCAGGTTTCCGCTAT+CGG | + | chr4_4:31216531-31216550 | Msa0677450:intron | 45.0% | |
| GGTTCGTGGACATAAATGGT+GGG | - | chr4_4:31216561-31216580 | None:intergenic | 45.0% | |
| TGGTTCGTGGACATAAATGG+TGG | - | chr4_4:31216562-31216581 | None:intergenic | 45.0% | |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr4_4:31216565-31216584 | None:intergenic | 45.0% |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr4_4:31216608-31216627 | Msa0677450:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr4_4:31216722-31216741 | Msa0677450:intron | 45.0% | |
| GTGTGTTAAGAGTCCCACAT+CGG | + | chr4_4:31216608-31216627 | Msa0677450:intron | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | + | chr4_4:31216722-31216741 | Msa0677450:intron | 45.0% | |
| !! | CCTTACAAAATCGGCTTGTG+AGG | - | chr4_4:31216867-31216886 | None:intergenic | 45.0% |
| !! | CCTCACAAGCCGATTTTGTA+AGG | + | chr4_4:31216864-31216883 | Msa0677450:intron | 45.0% |
| GCACACATGCCATTGTATAG+AGG | - | chr4_4:31217471-31217490 | None:intergenic | 45.0% | |
| GAGGGACCAAATCCACAAAA+AGG | + | chr4_4:31217709-31217728 | Msa0677450:intron | 45.0% | |
| AAATGACTAGGGTGTGAGCA+AGG | + | chr4_4:31217814-31217833 | Msa0677450:intron | 45.0% | |
| GAAGAGGAGGAATCATTGCT+TGG | + | chr4_4:31217836-31217855 | Msa0677450:CDS | 45.0% | |
| ! | AGGATAGCGGTTTACACTGA+CGG | - | chr4_4:31217952-31217971 | None:intergenic | 45.0% |
| AGTAGAGTGGAATCAGGAGA+GGG | - | chr4_4:31218007-31218026 | None:intergenic | 45.0% | |
| AAGTAGAGTGGAATCAGGAG+AGG | - | chr4_4:31218008-31218027 | None:intergenic | 45.0% | |
| GAAACCGGCGAAATTCTCTA+CGG | + | chr4_4:31218082-31218101 | Msa0677450:CDS | 45.0% | |
| GCTTGACACGTGCATCAAAA+TGG | + | chr4_4:31218104-31218123 | Msa0677450:CDS | 45.0% | |
| AAAGGACAAGCATGCACAAC+TGG | + | chr4_4:31218322-31218341 | Msa0677450:CDS | 45.0% | |
| ! | ACATTGGTTGATGTTGGTGG+TGG | + | chr4_4:31218400-31218419 | Msa0677450:CDS | 45.0% |
| !! | GTTGATGTTGGTGGTGGTAT+TGG | + | chr4_4:31218406-31218425 | Msa0677450:CDS | 45.0% |
| AAAGCTTACCCTCACATCCA+AGG | + | chr4_4:31218451-31218470 | Msa0677450:CDS | 45.0% | |
| TGGGTGATGCCATCATACTT+GGG | - | chr4_4:31218514-31218533 | None:intergenic | 45.0% | |
| ATGGGTGATGCCATCATACT+TGG | - | chr4_4:31218515-31218534 | None:intergenic | 45.0% | |
| TATGATGGCATCACCCATGT+TGG | + | chr4_4:31218517-31218536 | Msa0677450:CDS | 45.0% | |
| GAACATGTCTCCTCCAACAT+GGG | - | chr4_4:31218533-31218552 | None:intergenic | 45.0% | |
| ! | TAGATAGTTTGAGACAGGGG+CGG | + | chr4_4:31218998-31219017 | Msa0677450:intron | 45.0% |
| AGCCATATAGGAGCTTGTGT+GGG | + | chr4_4:31219021-31219040 | Msa0677450:intron | 45.0% | |
| ATCCAAAAGTTTGTGGAGGC+AGG | - | chr4_4:31219049-31219068 | None:intergenic | 45.0% | |
| GTTAGTGTGTAACGTGTGTG+GGG | - | chr4_4:31219150-31219169 | None:intergenic | 45.0% | |
| ACACTGCTCATATGGGAGTT+AGG | - | chr4_4:31219614-31219633 | None:intergenic | 45.0% | |
| CCCCCACTTCTCAAAATTTC+TGG | + | chr4_4:31219865-31219884 | Msa0677450:intron | 45.0% | |
| !! | AAAATTTCTGGCTACGCCAC+TGG | + | chr4_4:31219877-31219896 | Msa0677450:intron | 45.0% |
| !! | GGTAGTGGATTCTTCATGAC+TGG | + | chr4_4:31220014-31220033 | Msa0677450:intron | 45.0% |
| TTGTTTGCACACAACTCTGG+TGG | + | chr4_4:31220181-31220200 | Msa0677450:CDS | 45.0% | |
| ACAACTCTGGTGGTAAGGAA+AGG | + | chr4_4:31220191-31220210 | Msa0677450:CDS | 45.0% | |
| AGGAAAGGACTGAAGAGAAC+TGG | + | chr4_4:31220206-31220225 | Msa0677450:CDS | 45.0% | |
| !! | TCATGCATGGGAGCTGTTTT+TGG | + | chr4_4:31220484-31220503 | Msa0677450:three_prime_UTR | 45.0% |
| !!! | TAAAATTAATATTTTTTTGA+TGG | + | chr4_4:31215590-31215609 | Msa0677450:intron | 5.0% |
| !! | TCAAAATTAAATAATAAAAA+AGG | + | chr4_4:31216114-31216133 | Msa0677450:intron | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+GGG | + | chr4_4:31217089-31217108 | Msa0677450:intron | 5.0% |
| !!! | ATATTTAGTAATATTTTTTT+GGG | - | chr4_4:31218754-31218773 | None:intergenic | 5.0% |
| !!! | TATATTTAGTAATATTTTTT+TGG | - | chr4_4:31218755-31218774 | None:intergenic | 5.0% |
| GGCAGAAGGTGGAGAATGAT+TGG | - | chr4_4:31214741-31214760 | None:intergenic | 50.0% | |
| GTCTATCCGATGTGGGACTT+GGG | - | chr4_4:31216381-31216400 | None:intergenic | 50.0% | |
| CAAGTCCCACATCGGATAGA+CGG | + | chr4_4:31216380-31216399 | Msa0677450:intron | 50.0% | |
| AAGTCCCACATCGGATAGAC+GGG | + | chr4_4:31216381-31216400 | Msa0677450:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr4_4:31216441-31216460 | Msa0677450:intron | 50.0% |
| !! | GATAGCGGAAACCTGATAGC+AGG | - | chr4_4:31216532-31216551 | None:intergenic | 50.0% |
| GCTATCAGGTTTCCGCTATC+GGG | + | chr4_4:31216532-31216551 | Msa0677450:intron | 50.0% | |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr4_4:31216558-31216577 | None:intergenic | 50.0% |
| GTTAAGAGTCCCACATCGAC+TGG | + | chr4_4:31216612-31216631 | Msa0677450:intron | 50.0% | |
| !! | GATAGCGGAAACCTGATAGC+AGG | - | chr4_4:31216532-31216551 | None:intergenic | 50.0% |
| ! | TCGTGGACATAAATGGTGGG+TGG | - | chr4_4:31216558-31216577 | None:intergenic | 50.0% |
| !! | CAAAATCGGCTTGTGAGGTG+AGG | - | chr4_4:31216862-31216881 | None:intergenic | 50.0% |
| CAAGCCGTAGAGAATTTCGC+CGG | - | chr4_4:31218089-31218108 | None:intergenic | 50.0% | |
| !! | GATGTTGGTGGTGGTATTGG+CGG | + | chr4_4:31218409-31218428 | Msa0677450:CDS | 50.0% |
| !! | GGTGCCGTTGAAACAACATG+AGG | - | chr4_4:31218493-31218512 | None:intergenic | 50.0% |
| TCAACGGCACCCAAGTATGA+TGG | + | chr4_4:31218502-31218521 | Msa0677450:CDS | 50.0% | |
| CGAACATGTCTCCTCCAACA+TGG | - | chr4_4:31218534-31218553 | None:intergenic | 50.0% | |
| GAGCCATATAGGAGCTTGTG+TGG | + | chr4_4:31219020-31219039 | Msa0677450:intron | 50.0% | |
| AGCCCACACAAGCTCCTATA+TGG | - | chr4_4:31219026-31219045 | None:intergenic | 50.0% | |
| ! | CTCCTGCCTCCACAAACTTT+TGG | + | chr4_4:31219044-31219063 | Msa0677450:intron | 50.0% |
| TGCACACAACTCTGGTGGTA+AGG | + | chr4_4:31220186-31220205 | Msa0677450:CDS | 50.0% | |
| CGCACCTTAAAGGCAGAAGG+TGG | - | chr4_4:31214752-31214771 | None:intergenic | 55.0% | |
| CCACGCACCTTAAAGGCAGA+AGG | - | chr4_4:31214755-31214774 | None:intergenic | 55.0% | |
| !! | CCTTCTGCCTTTAAGGTGCG+TGG | + | chr4_4:31214752-31214771 | Msa0677450:intron | 55.0% |
| CGTCTATCCGATGTGGGACT+TGG | - | chr4_4:31216382-31216401 | None:intergenic | 55.0% | |
| GAGTCCCGTCTATCCGATGT+GGG | - | chr4_4:31216388-31216407 | None:intergenic | 55.0% | |
| AGAGTCCCGTCTATCCGATG+TGG | - | chr4_4:31216389-31216408 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr4_4:31216440-31216459 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr4_4:31216440-31216459 | Msa0677450:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr4_4:31216442-31216461 | Msa0677450:intron | 55.0% |
| AGAGCCTCTCCAAGATCCAC+TGG | + | chr4_4:31216502-31216521 | Msa0677450:intron | 55.0% | |
| GAGCCTCTCCAAGATCCACT+GGG | + | chr4_4:31216503-31216522 | Msa0677450:intron | 55.0% | |
| AGCGGAAACCTGATAGCAGG+TGG | - | chr4_4:31216529-31216548 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31216575-31216594 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31216575-31216594 | Msa0677450:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31216582-31216601 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31216587-31216606 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31216584-31216603 | Msa0677450:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31216585-31216604 | Msa0677450:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31216586-31216605 | Msa0677450:intron | 55.0% |
| AGCGGAAACCTGATAGCAGG+TGG | - | chr4_4:31216529-31216548 | None:intergenic | 55.0% | |
| !! | AAATGGTGGGTGGCCGATAG+CGG | - | chr4_4:31216657-31216676 | None:intergenic | 55.0% |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31216575-31216594 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31216575-31216594 | Msa0677450:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31216582-31216601 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31216587-31216606 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31216584-31216603 | Msa0677450:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31216585-31216604 | Msa0677450:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31216586-31216605 | Msa0677450:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | + | chr4_4:31216728-31216747 | Msa0677450:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | - | chr4_4:31216733-31216752 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | - | chr4_4:31216734-31216753 | None:intergenic | 55.0% | |
| ! | GCACTATTGGGCTTGGTTCG+TGG | - | chr4_4:31216575-31216594 | None:intergenic | 55.0% |
| CGAACCAAGCCCAATAGTGC+TGG | + | chr4_4:31216575-31216594 | Msa0677450:intron | 55.0% | |
| ACGACCAGCACTATTGGGCT+TGG | - | chr4_4:31216582-31216601 | None:intergenic | 55.0% | |
| CCCTCACGACCAGCACTATT+GGG | - | chr4_4:31216587-31216606 | None:intergenic | 55.0% | |
| !! | CCCAATAGTGCTGGTCGTGA+GGG | + | chr4_4:31216584-31216603 | Msa0677450:intron | 55.0% |
| !! | CCAATAGTGCTGGTCGTGAG+GGG | + | chr4_4:31216585-31216604 | Msa0677450:intron | 55.0% |
| !! | CAATAGTGCTGGTCGTGAGG+GGG | + | chr4_4:31216586-31216605 | Msa0677450:intron | 55.0% |
| GTCCCACATCGGATAGGTGA+TGG | + | chr4_4:31216728-31216747 | Msa0677450:intron | 55.0% | |
| GGCCATCACCTATCCGATGT+GGG | - | chr4_4:31216733-31216752 | None:intergenic | 55.0% | |
| AGGCCATCACCTATCCGATG+TGG | - | chr4_4:31216734-31216753 | None:intergenic | 55.0% | |
| CTAGGGTGTGAGCAAGGAAG+AGG | + | chr4_4:31217820-31217839 | Msa0677450:intron | 55.0% | |
| GATGGCATCACCCATGTTGG+AGG | + | chr4_4:31218520-31218539 | Msa0677450:CDS | 55.0% | |
| GCACTCCTCACCTCACAAGC+CGG | + | chr4_4:31216432-31216451 | Msa0677450:intron | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr4_4:31216445-31216464 | None:intergenic | 60.0% |
| TGGCCCAGTGGATCTTGGAG+AGG | - | chr4_4:31216509-31216528 | None:intergenic | 60.0% | |
| !! | AATGGTGGGTGGCCCGATAG+CGG | - | chr4_4:31216547-31216566 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31216583-31216602 | Msa0677450:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31216588-31216607 | None:intergenic | 60.0% | |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31216583-31216602 | Msa0677450:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31216588-31216607 | None:intergenic | 60.0% | |
| ! | GGGCTTGGTTCGTGGACATC+AGG | - | chr4_4:31216754-31216773 | None:intergenic | 60.0% |
| !! | GCCCAATAGTGCTGGTCGTG+AGG | + | chr4_4:31216583-31216602 | Msa0677450:intron | 60.0% |
| CCCCTCACGACCAGCACTAT+TGG | - | chr4_4:31216588-31216607 | None:intergenic | 60.0% | |
| GGGTGTGAGCAAGGAAGAGG+AGG | + | chr4_4:31217823-31217842 | Msa0677450:intron | 60.0% | |
| AGACAGGGGCGGAGCCATAT+AGG | + | chr4_4:31219009-31219028 | Msa0677450:intron | 60.0% | |
| GCAGGTGGCCCAGTGGATCT+TGG | - | chr4_4:31216514-31216533 | None:intergenic | 65.0% | |
| CCTGATAGCAGGTGGCCCAG+TGG | - | chr4_4:31216521-31216540 | None:intergenic | 65.0% | |
| CCACTGGGCCACCTGCTATC+AGG | + | chr4_4:31216518-31216537 | Msa0677450:intron | 65.0% | |
| GCAGGTGGCCCAGTCGATGT+GGG | - | chr4_4:31216624-31216643 | None:intergenic | 65.0% | |
| AGCAGGTGGCCCAGTCGATG+TGG | - | chr4_4:31216625-31216644 | None:intergenic | 65.0% | |
| CGACTGGGCCACCTGCTATC+AGG | + | chr4_4:31216628-31216647 | Msa0677450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 31214722 | 31220638 | 31214722 | ID=Msa0677450;Name=Msa0677450 |
| chr4_4 | mRNA | 31214722 | 31220638 | 31214722 | ID=Msa0677450-mRNA-1;Parent=Msa0677450;Name=Msa0677450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|0.66|1|1|3|320|369 |
| chr4_4 | exon | 31214722 | 31214766 | 31214722 | ID=Msa0677450-mRNA-1:exon:7784;Parent=Msa0677450-mRNA-1 |
| chr4_4 | exon | 31217824 | 31218588 | 31217824 | ID=Msa0677450-mRNA-1:exon:7785;Parent=Msa0677450-mRNA-1 |
| chr4_4 | exon | 31220019 | 31220638 | 31220019 | ID=Msa0677450-mRNA-1:exon:7786;Parent=Msa0677450-mRNA-1 |
| chr4_4 | CDS | 31214722 | 31214766 | 31214722 | ID=Msa0677450-mRNA-1:cds;Parent=Msa0677450-mRNA-1 |
| chr4_4 | CDS | 31217824 | 31218588 | 31217824 | ID=Msa0677450-mRNA-1:cds;Parent=Msa0677450-mRNA-1 |
| chr4_4 | CDS | 31220019 | 31220318 | 31220019 | ID=Msa0677450-mRNA-1:cds;Parent=Msa0677450-mRNA-1 |
| chr4_4 | three_prime_UTR | 31220319 | 31220638 | 31220319 | ID=Msa0677450-mRNA-1:three_prime_utr;Parent=Msa0677450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
