AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680060 MtrunA17_Chr4g0026141 91.954 261 10 1 1 250 1 261 1.29e-179 493
Msa0680060 MtrunA17_Chr2g0321631 58.621 261 74 8 6 249 5 248 1.13e-98 288
Msa0680060 MtrunA17_Chr7g0266701 59.322 177 58 2 3 165 2 178 6.59e-71 218
Msa0680060 MtrunA17_Chr4g0038751 42.353 170 88 4 7 171 17 181 1.03e-39 139
Msa0680060 MtrunA17_Chr4g0076731 44.937 158 76 3 2 153 51 203 2.01e-38 139
Msa0680060 MtrunA17_Chr2g0309891 45.806 155 71 5 4 149 5 155 2.28e-38 137
Msa0680060 MtrunA17_Chr1g0200561 49.630 135 65 3 1 135 15 146 5.01e-38 136
Msa0680060 MtrunA17_Chr5g0417791 43.949 157 70 4 5 149 3 153 2.47e-37 132
Msa0680060 MtrunA17_Chr6g0453131 38.503 187 92 5 3 172 13 193 5.88e-37 134
Msa0680060 MtrunA17_Chr4g0018391 48.120 133 60 4 6 135 8 134 7.78e-37 132
Msa0680060 MtrunA17_Chr2g0326361 45.283 159 72 5 4 159 13 159 1.93e-36 131
Msa0680060 MtrunA17_Chr5g0398971 32.627 236 134 7 6 229 8 230 2.29e-36 131
Msa0680060 MtrunA17_Chr5g0405211 48.551 138 62 4 1 135 4 135 2.87e-36 131
Msa0680060 MtrunA17_Chr8g0372121 47.826 138 63 4 1 135 2 133 3.34e-36 130
Msa0680060 MtrunA17_Chr6g0481091 42.675 157 78 4 5 153 6 158 1.45e-35 126
Msa0680060 MtrunA17_Chr4g0042561 42.675 157 72 4 5 149 9 159 1.86e-35 127
Msa0680060 MtrunA17_Chr5g0433781 43.137 153 75 4 4 148 5 153 2.16e-35 133
Msa0680060 MtrunA17_Chr8g0361731 44.371 151 78 3 1 150 10 155 2.20e-35 130
Msa0680060 MtrunA17_Chr3g0130731 40.361 166 81 4 5 159 7 165 2.82e-35 127
Msa0680060 MtrunA17_Chr3g0109821 35.922 206 107 6 4 200 5 194 4.28e-35 132
Msa0680060 MtrunA17_Chr4g0056541 39.326 178 91 6 6 180 8 171 5.58e-35 128
Msa0680060 MtrunA17_Chr1g0147421 45.185 135 69 2 2 135 24 154 1.03e-34 127
Msa0680060 MtrunA17_Chr3g0124761 41.916 167 75 5 2 155 4 161 1.15e-34 125
Msa0680060 MtrunA17_Chr2g0309331 40.361 166 85 4 2 158 7 167 1.17e-34 127
Msa0680060 MtrunA17_Chr3g0144271 47.407 135 66 2 2 135 20 150 1.28e-34 128
Msa0680060 MtrunA17_Chr3g0139331 40.854 164 85 4 2 158 8 166 1.96e-34 126
Msa0680060 MtrunA17_Chr8g0384721 39.766 171 83 5 5 162 7 170 3.89e-34 124
Msa0680060 MtrunA17_Chr2g0318081 41.667 156 73 5 4 149 15 162 5.66e-34 125
Msa0680060 MtrunA17_Chr8g0345671 46.622 148 70 5 6 148 12 155 7.52e-34 125
Msa0680060 MtrunA17_Chr8g0359921 41.772 158 72 5 4 149 13 162 8.24e-34 124
Msa0680060 MtrunA17_Chr6g0484441 41.935 155 78 5 1 149 1 149 9.30e-34 124
Msa0680060 MtrunA17_Chr5g0417001 43.571 140 73 3 1 139 10 144 1.23e-33 125
Msa0680060 MtrunA17_Chr2g0316971 46.970 132 64 3 5 135 23 149 1.35e-33 125
Msa0680060 MtrunA17_Chr6g0453451 41.765 170 81 6 5 163 20 182 3.19e-33 122
Msa0680060 MtrunA17_Chr7g0252971 40.000 170 73 6 2 149 5 167 3.76e-33 122
Msa0680060 MtrunA17_Chr4g0047841 47.059 136 62 4 5 137 15 143 4.74e-33 122
Msa0680060 MtrunA17_Chr8g0345691 41.333 150 81 4 3 148 10 156 1.35e-32 122
Msa0680060 MtrunA17_Chr5g0400461 44.231 156 73 5 4 148 5 157 2.03e-32 120
Msa0680060 MtrunA17_Chr8g0346001 46.617 133 62 4 6 135 16 142 2.80e-32 122
Msa0680060 MtrunA17_Chr1g0183741 39.735 151 81 4 4 149 9 154 2.97e-32 119
Msa0680060 MtrunA17_Chr7g0263931 39.086 197 94 7 2 180 8 196 4.70e-32 119
Msa0680060 MtrunA17_Chr5g0428991 42.484 153 76 4 5 149 25 173 1.13e-31 122
Msa0680060 MtrunA17_Chr2g0318101 38.095 189 84 7 5 171 15 192 2.50e-31 118
Msa0680060 MtrunA17_Chr7g0261411 39.735 151 81 4 4 149 9 154 3.15e-31 116
Msa0680060 MtrunA17_Chr4g0060931 40.000 155 77 4 5 149 17 165 6.04e-31 117
Msa0680060 MtrunA17_Chr3g0091921 40.385 156 77 4 4 149 15 164 6.17e-31 116
Msa0680060 MtrunA17_Chr4g0017921 45.865 133 63 4 6 135 9 135 1.06e-30 116
Msa0680060 MtrunA17_Chr3g0128151 40.645 155 80 4 3 149 20 170 1.24e-30 119
Msa0680060 MtrunA17_Chr7g0217721 45.038 131 66 3 5 135 19 143 1.38e-30 116
Msa0680060 MtrunA17_Chr7g0217711 44.275 131 67 3 5 135 19 143 1.44e-30 112
Msa0680060 MtrunA17_Chr3g0092671 41.935 155 80 5 7 154 7 158 1.93e-30 118
Msa0680060 MtrunA17_Chr3g0128111 40.000 150 78 4 8 149 45 190 2.82e-30 113
Msa0680060 MtrunA17_Chr2g0311661 46.763 139 64 6 2 135 17 150 2.98e-30 114
Msa0680060 MtrunA17_Chr1g0197361 38.710 155 85 3 7 154 10 161 3.55e-30 118
Msa0680060 MtrunA17_Chr6g0461661 42.466 146 73 5 5 148 18 154 4.12e-30 115
Msa0680060 MtrunA17_Chr4g0054791 41.935 155 77 5 4 148 5 156 4.56e-30 114
Msa0680060 MtrunA17_Chr2g0311651 39.894 188 82 9 2 163 18 200 6.74e-30 114
Msa0680060 MtrunA17_Chr2g0312321 39.873 158 78 5 1 149 7 156 7.65e-30 113
Msa0680060 MtrunA17_Chr8g0345711 40.580 138 78 3 1 137 8 142 3.04e-29 108
Msa0680060 MtrunA17_Chr1g0197351 40.000 160 78 4 4 149 41 196 4.45e-29 114
Msa0680060 MtrunA17_Chr8g0385991 38.750 160 77 4 5 150 14 166 8.98e-29 108
Msa0680060 MtrunA17_Chr7g0214071 39.869 153 77 5 5 150 15 159 1.10e-28 109
Msa0680060 MtrunA17_Chr3g0130101 38.710 155 83 4 7 153 9 159 3.05e-28 110
Msa0680060 MtrunA17_Chr7g0253011 41.045 134 71 3 5 135 17 145 4.43e-28 110
Msa0680060 MtrunA17_Chr8g0345721 35.135 185 84 6 1 152 26 207 6.03e-27 103
Msa0680060 MtrunA17_Chr3g0131911 44.604 139 65 5 5 139 14 144 9.07e-27 103
Msa0680060 MtrunA17_Chr5g0442771 37.356 174 79 7 7 158 20 185 1.22e-26 105
Msa0680060 MtrunA17_Chr1g0201021 42.958 142 73 5 7 147 21 155 2.13e-26 107
Msa0680060 MtrunA17_Chr8g0364791 36.424 151 84 4 7 149 8 154 3.13e-26 105
Msa0680060 MtrunA17_Chr8g0345731 40.146 137 75 4 3 135 22 155 5.02e-26 100
Msa0680060 MtrunA17_Chr8g0345741 36.765 136 81 4 16 150 2 133 6.73e-25 96.7
Msa0680060 MtrunA17_Chr8g0345701 38.926 149 69 6 4 136 6 148 2.22e-24 95.9
Msa0680060 MtrunA17_Chr8g0384201 35.484 155 88 4 7 153 8 158 9.18e-24 99.4
Msa0680060 MtrunA17_Chr4g0050701 40.909 132 64 4 5 135 11 129 9.83e-22 89.4
Msa0680060 MtrunA17_Chr2g0321741 44.954 109 55 4 26 134 13 116 1.42e-21 92.0
Msa0680060 MtrunA17_Chr3g0113001 46.154 78 41 1 58 135 13 89 2.65e-17 79.3
Msa0680060 MtrunA17_Chr3g0130321 29.825 171 90 4 1 151 1 161 2.74e-15 72.4
Msa0680060 MtrunA17_Chr7g0243371 38.372 86 52 1 51 135 5 90 1.58e-14 68.2
Msa0680060 MtrunA17_Chr3g0113031 56.140 57 24 1 79 135 9 64 4.89e-14 70.1
Msa0680060 MtrunA17_Chr8g0384351 32.886 149 74 7 5 149 10 136 4.99e-12 62.8
Msa0680060 MtrunA17_Chr7g0251651 27.168 173 115 5 5 177 18 179 6.51e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680060 AT3G44350.2 50.000 260 101 6 1 250 1 241 9.02e-81 243
Msa0680060 AT5G22380.1 55.172 232 87 4 1 220 1 227 8.44e-80 240
Msa0680060 AT3G44350.1 61.074 149 58 0 1 149 1 149 1.39e-63 196
Msa0680060 AT2G17040.1 38.028 213 112 6 2 203 3 206 4.47e-42 145
Msa0680060 AT1G71930.2 49.630 135 65 3 1 135 5 136 2.11e-38 136
Msa0680060 AT1G71930.1 49.630 135 65 3 1 135 5 136 2.11e-38 136
Msa0680060 AT2G02450.1 44.966 149 71 3 7 149 53 196 4.83e-38 137
Msa0680060 AT2G02450.2 44.966 149 71 3 7 149 53 196 5.79e-38 137
Msa0680060 AT1G69490.1 40.000 170 84 4 2 159 6 169 4.92e-37 131
Msa0680060 AT5G17260.1 43.226 155 75 4 4 149 5 155 9.96e-37 135
Msa0680060 AT1G65910.1 43.506 154 75 4 4 149 5 154 1.69e-36 136
Msa0680060 AT4G27410.2 43.902 164 73 6 4 156 13 168 2.83e-36 130
Msa0680060 AT3G17730.1 42.675 157 78 4 5 153 6 158 1.02e-35 127
Msa0680060 AT1G26870.1 47.794 136 65 3 1 135 12 142 1.11e-35 131
Msa0680060 AT4G36160.1 48.889 135 60 4 4 135 9 137 1.27e-35 130
Msa0680060 AT4G36160.3 48.889 135 60 4 4 135 9 137 1.27e-35 130
Msa0680060 AT4G36160.2 48.889 135 60 4 4 135 13 141 1.29e-35 130
Msa0680060 AT1G79580.3 42.331 163 81 4 4 158 16 173 1.54e-35 130
Msa0680060 AT1G79580.5 42.331 163 81 4 4 158 16 173 1.54e-35 130
Msa0680060 AT1G79580.4 42.331 163 81 4 4 158 16 173 1.54e-35 130
Msa0680060 AT1G79580.2 42.331 163 81 4 4 158 16 173 1.54e-35 130
Msa0680060 AT1G79580.1 42.331 163 81 4 4 158 16 173 1.54e-35 130
Msa0680060 AT1G76420.1 43.478 161 76 5 2 153 19 173 1.66e-35 129
Msa0680060 AT4G17980.1 44.231 156 73 5 4 148 5 157 1.80e-35 127
Msa0680060 AT4G17980.2 44.231 156 73 5 4 148 5 157 2.80e-35 127
Msa0680060 AT2G18060.3 48.148 135 61 4 4 135 8 136 3.40e-35 129
Msa0680060 AT2G18060.1 48.148 135 61 4 4 135 8 136 3.40e-35 129
Msa0680060 AT1G33060.1 43.226 155 76 4 3 149 22 172 3.53e-35 132
Msa0680060 AT1G33060.2 43.226 155 76 4 3 149 22 172 3.73e-35 132
Msa0680060 AT5G62380.2 45.802 131 68 3 5 135 7 134 6.99e-35 128
Msa0680060 AT5G62380.1 45.802 131 68 3 5 135 7 134 6.99e-35 128
Msa0680060 AT3G15500.1 43.590 156 70 5 4 149 13 160 9.83e-35 127
Msa0680060 AT5G46590.1 43.791 153 74 4 5 148 6 155 1.14e-34 126
Msa0680060 AT4G27410.3 41.714 175 78 7 4 156 13 185 1.16e-34 126
Msa0680060 AT4G35580.1 43.871 155 75 4 3 149 7 157 1.47e-34 130
Msa0680060 AT4G35580.2 43.871 155 75 4 3 149 7 157 1.48e-34 130
Msa0680060 AT4G35580.3 43.871 155 75 4 3 149 7 157 1.48e-34 130
Msa0680060 AT2G24430.2 41.667 156 78 4 2 149 13 163 1.65e-34 126
Msa0680060 AT2G24430.1 41.667 156 78 4 2 149 13 163 1.65e-34 126
Msa0680060 AT3G03200.1 36.453 203 108 6 4 197 5 195 2.66e-34 129
Msa0680060 AT5G66300.1 44.928 138 67 4 4 138 11 142 2.69e-34 125
Msa0680060 AT1G01720.1 42.683 164 71 5 5 154 7 161 2.74e-34 125
Msa0680060 AT5G24590.2 34.450 209 120 5 4 198 12 217 2.84e-34 128
Msa0680060 AT1G52890.1 42.949 156 71 5 4 149 13 160 4.20e-34 125
Msa0680060 AT1G12260.2 46.617 133 62 4 6 135 8 134 4.52e-34 125
Msa0680060 AT1G12260.1 46.617 133 62 4 6 135 8 134 7.18e-34 126
Msa0680060 AT3G61910.1 44.776 134 65 4 5 135 11 138 2.25e-33 124
Msa0680060 AT5G39820.1 43.885 139 72 3 2 139 17 150 3.30e-33 123
Msa0680060 AT1G62700.1 45.113 133 64 4 6 135 8 134 3.38e-33 124
Msa0680060 AT1G62700.2 45.113 133 64 4 6 135 8 134 3.38e-33 124
Msa0680060 AT5G46590.2 46.565 131 67 3 5 135 6 133 4.53e-33 121
Msa0680060 AT5G08790.1 41.011 178 80 6 2 162 4 173 4.99e-33 121
Msa0680060 AT3G18400.1 40.385 156 80 4 1 149 1 150 5.36e-33 122
Msa0680060 AT2G46770.1 45.522 134 64 4 5 135 16 143 8.54e-33 122
Msa0680060 AT1G54330.1 41.722 151 79 4 4 149 5 151 8.67e-33 121
Msa0680060 AT4G10350.1 33.188 229 121 7 6 223 10 217 1.52e-32 121
Msa0680060 AT1G77450.1 41.772 158 70 5 5 149 10 158 1.70e-32 119
Msa0680060 AT1G61110.1 38.710 186 85 5 5 168 16 194 2.16e-32 120
Msa0680060 AT5G61430.1 41.935 155 74 5 5 149 16 164 2.97e-32 120
Msa0680060 AT3G15170.1 40.491 163 81 4 2 153 17 174 3.45e-32 120
Msa0680060 AT3G10490.1 40.645 155 79 4 4 149 26 176 7.68e-32 117
Msa0680060 AT1G32770.1 45.865 133 63 4 6 135 17 143 9.98e-32 120
Msa0680060 AT3G10480.1 40.645 155 79 4 4 149 26 176 1.10e-31 121
Msa0680060 AT3G49530.2 41.176 136 77 2 3 138 11 143 1.17e-31 120
Msa0680060 AT3G10480.2 40.909 154 79 4 4 149 26 175 1.26e-31 121
Msa0680060 AT3G04070.2 38.922 167 74 6 4 149 9 168 1.60e-31 119
Msa0680060 AT3G49530.1 41.176 136 77 2 3 138 11 143 2.93e-31 120
Msa0680060 AT3G29035.1 38.278 209 105 9 5 205 24 216 3.76e-31 117
Msa0680060 AT3G04070.1 43.478 138 65 4 4 135 9 139 3.83e-31 118
Msa0680060 AT5G53950.1 47.368 133 62 4 5 135 17 143 4.65e-31 118
Msa0680060 AT5G63790.1 38.824 170 84 4 2 158 47 209 5.59e-31 117
Msa0680060 AT5G63790.2 38.824 170 84 4 2 158 57 219 6.90e-31 117
Msa0680060 AT1G32510.1 39.623 159 78 5 5 148 6 161 8.54e-31 115
Msa0680060 AT1G33280.1 39.490 157 87 4 6 157 9 162 8.87e-31 116
Msa0680060 AT3G10500.1 39.623 159 84 4 4 154 8 162 1.42e-30 119
Msa0680060 AT3G10490.2 40.645 155 79 4 4 149 26 176 2.03e-30 117
Msa0680060 AT1G56010.2 38.750 160 82 4 1 149 15 169 2.72e-30 115
Msa0680060 AT5G39610.1 40.645 155 76 5 5 149 20 168 3.04e-30 114
Msa0680060 AT3G12977.1 38.994 159 80 5 1 149 14 165 3.05e-30 114
Msa0680060 AT5G18270.2 38.462 156 79 4 5 149 21 170 5.29e-30 114
Msa0680060 AT5G07680.1 40.000 155 77 5 5 149 17 165 7.52e-30 114
Msa0680060 AT1G34180.3 39.103 156 83 4 7 154 18 169 7.63e-30 116
Msa0680060 AT5G07680.2 38.710 155 79 4 5 149 3 151 8.06e-30 114
Msa0680060 AT5G18270.1 38.462 156 79 4 5 149 21 170 1.09e-29 114
Msa0680060 AT3G12910.1 48.872 133 58 5 7 135 23 149 1.10e-29 113
Msa0680060 AT5G22290.1 41.497 147 79 5 4 148 20 161 1.11e-29 114
Msa0680060 AT5G13180.1 41.558 154 74 5 5 150 14 159 1.34e-29 112
Msa0680060 AT3G15510.1 39.306 173 76 6 9 159 21 186 2.04e-29 114
Msa0680060 AT2G33480.2 40.132 152 76 4 5 150 15 157 2.60e-29 111
Msa0680060 AT1G34180.1 39.103 156 83 4 7 154 18 169 2.67e-29 115
Msa0680060 AT3G04060.1 37.975 158 77 4 5 149 20 169 2.96e-29 112
Msa0680060 AT4G28530.1 37.647 170 72 5 5 149 10 170 4.38e-29 112
Msa0680060 AT3G44290.2 40.559 143 79 5 7 148 16 153 5.16e-29 109
Msa0680060 AT2G33480.1 39.610 154 76 4 5 150 15 159 6.22e-29 110
Msa0680060 AT5G04395.1 41.379 145 71 5 2 134 25 167 6.98e-29 108
Msa0680060 AT5G04410.1 38.994 159 85 4 4 154 8 162 1.84e-28 113
Msa0680060 AT3G44290.1 40.559 143 79 5 7 148 16 153 2.83e-28 110
Msa0680060 AT1G34190.1 42.969 128 69 3 7 134 18 141 1.84e-27 110
Msa0680060 AT4G01550.1 39.041 146 82 3 8 148 7 150 2.20e-27 109
Msa0680060 AT1G34180.4 36.145 166 86 4 7 154 18 181 3.77e-27 108
Msa0680060 AT2G43000.1 36.207 174 96 4 7 171 20 187 4.99e-27 105
Msa0680060 AT2G27300.1 42.188 128 69 3 7 134 16 138 7.38e-27 106
Msa0680060 AT3G10480.3 35.294 187 77 5 4 149 26 209 7.56e-27 108
Msa0680060 AT5G09330.5 43.411 129 69 3 7 135 8 132 8.26e-27 108
Msa0680060 AT5G09330.2 43.411 129 69 3 7 135 8 132 8.26e-27 108
Msa0680060 AT5G09330.4 43.411 129 69 3 7 135 8 132 8.26e-27 108
Msa0680060 AT5G09330.3 43.411 129 69 3 7 135 8 132 8.26e-27 108
Msa0680060 AT5G09330.1 43.411 129 69 3 7 135 8 132 8.26e-27 108
Msa0680060 AT1G34180.2 36.145 166 86 4 7 154 18 181 9.42e-27 108
Msa0680060 AT5G64060.1 40.602 133 67 4 7 135 8 132 1.36e-25 103
Msa0680060 AT3G04420.2 38.095 147 84 4 6 148 4 147 1.70e-25 102
Msa0680060 AT4G01520.1 38.926 149 83 5 6 148 5 151 3.25e-25 101
Msa0680060 AT3G04420.1 38.095 147 84 4 6 148 4 147 4.85e-25 101
Msa0680060 AT4G01540.4 39.456 147 81 5 8 148 7 151 4.59e-24 99.8
Msa0680060 AT4G01540.3 39.456 147 81 5 8 148 7 151 8.47e-24 99.4
Msa0680060 AT4G01540.2 39.456 147 81 5 8 148 7 151 1.07e-23 99.0
Msa0680060 AT4G01540.1 39.456 147 81 5 8 148 7 151 1.31e-23 99.4
Msa0680060 AT1G02230.1 37.333 150 82 5 6 148 4 148 2.30e-22 94.7
Msa0680060 AT1G52880.1 39.506 162 70 6 9 149 21 175 2.51e-22 94.0
Msa0680060 AT1G32870.2 38.125 160 83 6 5 154 10 163 6.51e-22 94.7
Msa0680060 AT1G32870.1 38.125 160 83 6 5 154 10 163 6.93e-22 94.7
Msa0680060 AT1G32870.3 38.125 160 83 6 5 154 46 199 9.98e-22 94.4
Msa0680060 AT1G02250.1 36.424 151 82 6 6 148 4 148 1.10e-21 92.8
Msa0680060 AT3G12977.2 40.196 102 51 2 57 149 12 112 7.32e-19 82.8
Msa0680060 AT5G64530.2 39.695 131 61 7 5 134 3 116 1.09e-18 80.9
Msa0680060 AT5G64530.1 40.152 132 59 7 5 134 3 116 1.28e-18 81.3
Msa0680060 AT1G02220.1 26.482 253 153 11 6 244 4 237 1.52e-18 84.3
Msa0680060 AT1G01010.1 33.962 159 88 6 1 148 1 153 7.83e-18 82.4
Msa0680060 AT4G10350.2 30.178 169 94 4 63 223 18 170 1.34e-17 80.5
Msa0680060 AT5G61430.2 39.216 102 51 3 58 149 1 101 5.60e-17 78.6
Msa0680060 AT1G56010.1 40.206 97 46 2 64 149 7 102 9.37e-17 77.8
Msa0680060 AT4G28530.2 38.739 111 39 3 5 95 10 111 5.21e-16 76.3
Msa0680060 AT2G33480.3 39.362 94 48 2 65 150 10 102 1.05e-15 73.9
Msa0680060 AT3G04430.1 36.364 110 66 2 11 120 6 111 1.63e-14 70.5
Msa0680060 AT5G50820.1 33.813 139 76 5 5 140 17 142 1.55e-13 67.8
Msa0680060 AT3G56530.1 29.221 154 98 6 4 150 51 200 6.14e-13 67.8
Msa0680060 AT3G10490.4 42.105 76 34 2 83 149 2 76 7.47e-12 64.7
Msa0680060 AT3G10490.3 42.105 76 34 2 83 149 2 76 7.47e-12 64.7
Msa0680060 AT5G14000.2 31.061 132 81 5 5 134 15 138 2.17e-11 60.8
Msa0680060 AT2G43000.2 38.000 100 52 2 81 171 11 109 2.37e-11 61.6
Msa0680060 AT2G18060.2 56.250 48 20 1 88 135 2 48 2.53e-11 62.8
Msa0680060 AT5G14000.1 30.303 132 82 4 5 134 15 138 5.51e-11 60.8

Find 76 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGAAATTTCTCAATT+AGG 0.161327 4_4:-38837807 Msa0680060:CDS
TCTTCGGATAACAAAGTTAT+TGG 0.171109 4_4:-38838747 Msa0680060:CDS
CATTTGAAATTTCTCAATTA+GGG 0.213508 4_4:-38837806 Msa0680060:CDS
CCCATTCCCATAGTGATTCT+TGG 0.233146 4_4:+38837679 None:intergenic
CTTCGGATAACAAAGTTATT+GGG 0.268350 4_4:-38838746 Msa0680060:CDS
TTAACTCTTTCTCTCTCTAA+TGG 0.304088 4_4:+38837900 None:intergenic
ACCATGAGCTGGAGTTAATT+AGG 0.306112 4_4:+38837635 None:intergenic
TTCAATTCCAAGAATCACTA+TGG 0.318489 4_4:-38837686 Msa0680060:CDS
AAAACCATGGTGTTCTATAA+AGG 0.328853 4_4:-38838717 Msa0680060:CDS
TCCTGGTTATGTTTATTCTT+CGG 0.357166 4_4:-38838763 Msa0680060:CDS
GAACTACTGCTTGTGGGTAT+TGG 0.373733 4_4:-38838800 Msa0680060:CDS
CCACAAGCAGTAGTTCTATT+AGG 0.380796 4_4:+38838807 None:intergenic
CAAGTGGAAGGAAAACAAAA+TGG 0.388513 4_4:-38838686 Msa0680060:CDS
ACACCATTGATGTCAATAAC+TGG 0.391185 4_4:+38839162 None:intergenic
GCCAAACAAGTGCTATAGAT+AGG 0.402516 4_4:-38839191 Msa0680060:CDS
AGAAAGAGTTAATCAATTAC+CGG 0.404391 4_4:-38837889 Msa0680060:CDS
GTAGAATTCAATTAATTCAA+TGG 0.406518 4_4:-38839295 Msa0680060:exon
ACCATTGCTCTTTATCTTCG+CGG 0.411304 4_4:+38838874 None:intergenic
CCCTATCTATAGCACTTGTT+TGG 0.413662 4_4:+38839190 None:intergenic
ATTCCAGTTATTGACATCAA+TGG 0.418660 4_4:-38839165 Msa0680060:CDS
TGTCGAGTGTATGTAATATC+AGG 0.421062 4_4:-38837948 Msa0680060:CDS
CTTGCTTCTCTCTCTTGACC+TGG 0.421832 4_4:+38838840 None:intergenic
GAGATTGATCAAAATCCATT+TGG 0.424069 4_4:-38837861 Msa0680060:CDS
TCATCATATTTGTTTAGAAT+AGG 0.449047 4_4:-38837501 Msa0680060:three_prime_UTR
GAGGTTCAAATAGCACAAAT+TGG 0.451969 4_4:-38837746 Msa0680060:CDS
AATAGTAACAATGAAACTAA+TGG 0.454717 4_4:-38837717 Msa0680060:CDS
TGTGGGTATTGGAAGGCAAC+AGG 0.456765 4_4:-38838789 Msa0680060:CDS
TATCTAAATAATAAATTACA+AGG 0.468522 4_4:-38839213 Msa0680060:CDS
CTAGTGGCATATGATTACTT+TGG 0.471161 4_4:+38837778 None:intergenic
TGGTGCCACATCTACTCATC+AGG 0.471854 4_4:-38837841 Msa0680060:CDS
TACTTACTTGGGAGGTTCCA+TGG 0.472632 4_4:+38839135 None:intergenic
TCCAAGAATCACTATGGGAA+TGG 0.475257 4_4:-38837680 Msa0680060:CDS
GAGTCGTGTTTATACTTGAC+GGG 0.475871 4_4:+38837594 None:intergenic
CCAAGAATCACTATGGGAAT+GGG 0.486561 4_4:-38837679 Msa0680060:CDS
CTAACAAGCTCTTCTTCAGT+TGG 0.487944 4_4:+38839240 None:intergenic
TAACAAGCTCTTCTTCAGTT+GGG 0.488303 4_4:+38839241 None:intergenic
TGGAAGGCAACAGGTTCTCC+TGG 0.494297 4_4:-38838780 Msa0680060:CDS
CTAATAGAACTACTGCTTGT+GGG 0.501976 4_4:-38838806 Msa0680060:CDS
TTGTTAGTTGAGTTAGAACT+TGG 0.507673 4_4:+38837367 None:intergenic
TGAGTAGATGTGGCACCAAA+TGG 0.509329 4_4:+38837846 None:intergenic
AGGTCAAGAGAGAGAAGCAA+GGG 0.520943 4_4:-38838838 Msa0680060:CDS
CCAAACAAGTGCTATAGATA+GGG 0.540158 4_4:-38839190 Msa0680060:CDS
AAGAGAGAGAAGCAAGGGGA+GGG 0.540485 4_4:-38838833 Msa0680060:CDS
TATTAATGTACTTACTTGGG+AGG 0.544087 4_4:+38839127 None:intergenic
TGATGTTTAAATTTATTGTG+AGG 0.545151 4_4:+38837422 None:intergenic
CGAGTCGTGTTTATACTTGA+CGG 0.546832 4_4:+38837593 None:intergenic
TTGAGTATCCCACCATGAGC+TGG 0.552044 4_4:+38837624 None:intergenic
ATGCCACTAGAGGTTGTAAG+AGG 0.559720 4_4:-38837765 Msa0680060:CDS
TTTGAAATTTCTCAATTAGG+GGG 0.567316 4_4:-38837804 Msa0680060:CDS
TTCGGATAACAAAGTTATTG+GGG 0.568678 4_4:-38838745 Msa0680060:CDS
CAAGAGAGAGAAGCAAGGGG+AGG 0.575212 4_4:-38838834 Msa0680060:CDS
AAGGAAAAGCTCCAAGTGGA+AGG 0.577529 4_4:-38838698 Msa0680060:CDS
CAATGAAACTAATGGTGATG+AGG 0.578944 4_4:-38837709 Msa0680060:CDS
CCTAATAGAACTACTGCTTG+TGG 0.583756 4_4:-38838807 Msa0680060:CDS
TCCTAATTAACTCCAGCTCA+TGG 0.586586 4_4:-38837636 Msa0680060:exon
ATGGAAGATACCTTCCCACC+TGG 0.589454 4_4:-38839276 Msa0680060:CDS
ATTTGAAATTTCTCAATTAG+GGG 0.591470 4_4:-38837805 Msa0680060:CDS
GAACCTCTTACAACCTCTAG+TGG 0.594164 4_4:+38837762 None:intergenic
TCCGAAGAATAAACATAACC+AGG 0.594367 4_4:+38838762 None:intergenic
TACTGCTTGTGGGTATTGGA+AGG 0.594408 4_4:-38838796 Msa0680060:CDS
TCAATTCCAAGAATCACTAT+GGG 0.601158 4_4:-38837685 Msa0680060:CDS
TGGATTGGTAGATACTTGAA+TGG 0.602699 4_4:+38838644 None:intergenic
GAAACGAAAACCAGGTGGGA+AGG 0.608858 4_4:+38839266 None:intergenic
GCCGCGAAGATAAAGAGCAA+TGG 0.609204 4_4:-38838875 Msa0680060:CDS
AATTAACTCCAGCTCATGGT+GGG 0.625503 4_4:-38837632 Msa0680060:three_prime_UTR
CAGGTCAAGAGAGAGAAGCA+AGG 0.633366 4_4:-38838839 Msa0680060:CDS
AAGTAATCATATGCCACTAG+AGG 0.633670 4_4:-38837775 Msa0680060:CDS
ACATCAATGGTGTAGAACCA+TGG 0.640791 4_4:-38839152 Msa0680060:CDS
GTTGGGAAGAAACGAAAACC+AGG 0.640908 4_4:+38839258 None:intergenic
TAATTAACTCCAGCTCATGG+TGG 0.645643 4_4:-38837633 Msa0680060:three_prime_UTR
TATAAAGGAAAAGCTCCAAG+TGG 0.670306 4_4:-38838702 Msa0680060:CDS
TGCATCCTGATGAGTAGATG+TGG 0.677636 4_4:+38837836 None:intergenic
GGTCAAGAGAGAGAAGCAAG+GGG 0.681277 4_4:-38838837 Msa0680060:CDS
AGTCGTGTTTATACTTGACG+GGG 0.694889 4_4:+38837595 None:intergenic
GGGAAGAAACGAAAACCAGG+TGG 0.697514 4_4:+38839261 None:intergenic
GGAAGAAACGAAAACCAGGT+GGG 0.702147 4_4:+38839262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTAAATAATAAATTACA+AGG - chr4_4:38837468-38837487 Msa0680060:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + chr4_4:38838263-38838282 None:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + chr4_4:38838380-38838399 None:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - chr4_4:38838470-38838489 Msa0680060:intron 10.0%
!! TATCTAAATAATAAATTACA+AGG - chr4_4:38837468-38837487 Msa0680060:three_prime_UTR 10.0%
!!! TATACTATTGTTTTATTTAT+AGG + chr4_4:38838263-38838282 None:intergenic 10.0%
!!! AAATCTTATTTAATCAATTA+TGG + chr4_4:38838380-38838399 None:intergenic 10.0%
!!! AAAATTTTCAAAAACAAAAA+AGG - chr4_4:38838470-38838489 Msa0680060:intron 10.0%
!! TTATATTAATGTACTTACTT+GGG + chr4_4:38837560-38837579 None:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + chr4_4:38837561-38837580 None:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - chr4_4:38838114-38838133 Msa0680060:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - chr4_4:38838203-38838222 Msa0680060:intron 15.0%
!!! TTGTTGTTTTTTTAGTTTAA+AGG + chr4_4:38838597-38838616 None:intergenic 15.0%
!!! TAAATTTAGCTTTTGTTTTT+TGG - chr4_4:38838679-38838698 Msa0680060:CDS 15.0%
!! TTATATTAATGTACTTACTT+GGG + chr4_4:38837560-38837579 None:intergenic 15.0%
!! TTTATATTAATGTACTTACT+TGG + chr4_4:38837561-38837580 None:intergenic 15.0%
!! TAATAATTAAGGTATACAAT+AGG - chr4_4:38838114-38838133 Msa0680060:intron 15.0%
!! AAACTGAAAATTAACATATA+TGG - chr4_4:38838203-38838222 Msa0680060:intron 15.0%
!!! TTGTTGTTTTTTTAGTTTAA+AGG + chr4_4:38838597-38838616 None:intergenic 15.0%
!!! TAAATTTAGCTTTTGTTTTT+TGG - chr4_4:38838679-38838698 Msa0680060:CDS 15.0%
!! GTAGAATTCAATTAATTCAA+TGG - chr4_4:38837386-38837405 Msa0680060:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + chr4_4:38837613-38837632 None:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - chr4_4:38837622-38837641 Msa0680060:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + chr4_4:38837679-38837698 None:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + chr4_4:38837746-38837765 None:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + chr4_4:38838231-38838250 None:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - chr4_4:38838874-38838893 Msa0680060:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - chr4_4:38838875-38838894 Msa0680060:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - chr4_4:38838876-38838895 Msa0680060:CDS 20.0%
!! AATAGTAACAATGAAACTAA+TGG - chr4_4:38838964-38838983 Msa0680060:intron 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - chr4_4:38839180-38839199 Msa0680060:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + chr4_4:38839262-38839281 None:intergenic 20.0%
!! GTAGAATTCAATTAATTCAA+TGG - chr4_4:38837386-38837405 Msa0680060:three_prime_UTR 20.0%
!! TTGTCTATAAAAGAAAGAAA+TGG + chr4_4:38837613-38837632 None:intergenic 20.0%
!!! TTTATAGACAAACTTTTACT+AGG - chr4_4:38837622-38837641 Msa0680060:three_prime_UTR 20.0%
!!! TAAAAAAAGTATTAACCATG+AGG + chr4_4:38837679-38837698 None:intergenic 20.0%
!! AATCATCAAACTATGTAAAT+CGG + chr4_4:38837746-38837765 None:intergenic 20.0%
!!! CTTGTATGAATTTCATTTTA+AGG + chr4_4:38838231-38838250 None:intergenic 20.0%
!!! TCATTTGAAATTTCTCAATT+AGG - chr4_4:38838874-38838893 Msa0680060:CDS 20.0%
!!! CATTTGAAATTTCTCAATTA+GGG - chr4_4:38838875-38838894 Msa0680060:CDS 20.0%
!!! ATTTGAAATTTCTCAATTAG+GGG - chr4_4:38838876-38838895 Msa0680060:CDS 20.0%
!! AATAGTAACAATGAAACTAA+TGG - chr4_4:38838964-38838983 Msa0680060:intron 20.0%
!!! TCATCATATTTGTTTAGAAT+AGG - chr4_4:38839180-38839199 Msa0680060:CDS 20.0%
!! TGATGTTTAAATTTATTGTG+AGG + chr4_4:38839262-38839281 None:intergenic 20.0%
! CTATAAAAGAAAGAAATGGA+AGG + chr4_4:38837609-38837628 None:intergenic 25.0%
! TCGTCATGATGTAATAATTA+AGG - chr4_4:38838103-38838122 Msa0680060:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - chr4_4:38838286-38838305 Msa0680060:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - chr4_4:38838401-38838420 Msa0680060:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - chr4_4:38838402-38838421 Msa0680060:intron 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - chr4_4:38838695-38838714 Msa0680060:CDS 25.0%
! AGAAAGAGTTAATCAATTAC+CGG - chr4_4:38838792-38838811 Msa0680060:CDS 25.0%
!! TTTTGATCAATCTCATTAAC+CGG + chr4_4:38838814-38838833 None:intergenic 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - chr4_4:38838877-38838896 Msa0680060:CDS 25.0%
!! TTCATTTTACCCAAGAAAAA+AGG - chr4_4:38839213-38839232 Msa0680060:CDS 25.0%
!!! TACAAAGATCCTTTTTTCTT+GGG + chr4_4:38839225-38839244 None:intergenic 25.0%
!!! TTACAAAGATCCTTTTTTCT+TGG + chr4_4:38839226-38839245 None:intergenic 25.0%
! CTATAAAAGAAAGAAATGGA+AGG + chr4_4:38837609-38837628 None:intergenic 25.0%
! TCGTCATGATGTAATAATTA+AGG - chr4_4:38838103-38838122 Msa0680060:intron 25.0%
!! TTTTATGACCAACAAATACT+TGG - chr4_4:38838286-38838305 Msa0680060:intron 25.0%
! ACATAGTATGAATGACATTT+AGG - chr4_4:38838401-38838420 Msa0680060:intron 25.0%
! CATAGTATGAATGACATTTA+GGG - chr4_4:38838402-38838421 Msa0680060:intron 25.0%
!!! TTTTTGGTGTTTTATAGTTG+AGG - chr4_4:38838695-38838714 Msa0680060:CDS 25.0%
! AGAAAGAGTTAATCAATTAC+CGG - chr4_4:38838792-38838811 Msa0680060:CDS 25.0%
!! TTTTGATCAATCTCATTAAC+CGG + chr4_4:38838814-38838833 None:intergenic 25.0%
!! TTTGAAATTTCTCAATTAGG+GGG - chr4_4:38838877-38838896 Msa0680060:CDS 25.0%
!! TTCATTTTACCCAAGAAAAA+AGG - chr4_4:38839213-38839232 Msa0680060:CDS 25.0%
!!! TACAAAGATCCTTTTTTCTT+GGG + chr4_4:38839225-38839244 None:intergenic 25.0%
!!! TTACAAAGATCCTTTTTTCT+TGG + chr4_4:38839226-38839245 None:intergenic 25.0%
ATTCCAGTTATTGACATCAA+TGG - chr4_4:38837516-38837535 Msa0680060:three_prime_UTR 30.0%
TATTAATGTACTTACTTGGG+AGG + chr4_4:38837557-38837576 None:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - chr4_4:38837628-38837647 Msa0680060:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - chr4_4:38837918-38837937 Msa0680060:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - chr4_4:38837934-38837953 Msa0680060:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - chr4_4:38837935-38837954 Msa0680060:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - chr4_4:38837936-38837955 Msa0680060:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - chr4_4:38837964-38837983 Msa0680060:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + chr4_4:38837971-38837990 None:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + chr4_4:38838074-38838093 None:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + chr4_4:38838297-38838316 None:intergenic 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - chr4_4:38838487-38838506 Msa0680060:intron 30.0%
TTAACTCTTTCTCTCTCTAA+TGG + chr4_4:38838784-38838803 None:intergenic 30.0%
GAGATTGATCAAAATCCATT+TGG - chr4_4:38838820-38838839 Msa0680060:CDS 30.0%
TTCAATTCCAAGAATCACTA+TGG - chr4_4:38838995-38839014 Msa0680060:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - chr4_4:38838996-38839015 Msa0680060:intron 30.0%
ATTCCAGTTATTGACATCAA+TGG - chr4_4:38837516-38837535 Msa0680060:three_prime_UTR 30.0%
TATTAATGTACTTACTTGGG+AGG + chr4_4:38837557-38837576 None:intergenic 30.0%
! GACAAACTTTTACTAGGTTA+TGG - chr4_4:38837628-38837647 Msa0680060:three_prime_UTR 30.0%
TCCTGGTTATGTTTATTCTT+CGG - chr4_4:38837918-38837937 Msa0680060:CDS 30.0%
TCTTCGGATAACAAAGTTAT+TGG - chr4_4:38837934-38837953 Msa0680060:CDS 30.0%
CTTCGGATAACAAAGTTATT+GGG - chr4_4:38837935-38837954 Msa0680060:CDS 30.0%
TTCGGATAACAAAGTTATTG+GGG - chr4_4:38837936-38837955 Msa0680060:CDS 30.0%
AAAACCATGGTGTTCTATAA+AGG - chr4_4:38837964-38837983 Msa0680060:CDS 30.0%
! TTTTCCTTTATAGAACACCA+TGG + chr4_4:38837971-38837990 None:intergenic 30.0%
AATGATGCAATATATACCTG+AGG + chr4_4:38838074-38838093 None:intergenic 30.0%
! CTTTTGATCCAAGTATTTGT+TGG + chr4_4:38838297-38838316 None:intergenic 30.0%
AAAAGGAAAAAACAGTTGAG+AGG - chr4_4:38838487-38838506 Msa0680060:intron 30.0%
TTAACTCTTTCTCTCTCTAA+TGG + chr4_4:38838784-38838803 None:intergenic 30.0%
GAGATTGATCAAAATCCATT+TGG - chr4_4:38838820-38838839 Msa0680060:CDS 30.0%
TTCAATTCCAAGAATCACTA+TGG - chr4_4:38838995-38839014 Msa0680060:intron 30.0%
TCAATTCCAAGAATCACTAT+GGG - chr4_4:38838996-38839015 Msa0680060:intron 30.0%
TAACAAGCTCTTCTTCAGTT+GGG + chr4_4:38837443-38837462 None:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - chr4_4:38837491-38837510 Msa0680060:three_prime_UTR 35.0%
ACACCATTGATGTCAATAAC+TGG + chr4_4:38837522-38837541 None:intergenic 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - chr4_4:38837823-38837842 Msa0680060:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - chr4_4:38837875-38837894 Msa0680060:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + chr4_4:38837922-38837941 None:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - chr4_4:38837951-38837970 Msa0680060:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - chr4_4:38837979-38837998 Msa0680060:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + chr4_4:38837997-38838016 None:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - chr4_4:38837995-38838014 Msa0680060:intron 35.0%
!! TGGATTGGTAGATACTTGAA+TGG + chr4_4:38838040-38838059 None:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - chr4_4:38838506-38838525 Msa0680060:intron 35.0%
TGTCGAGTGTATGTAATATC+AGG - chr4_4:38838733-38838752 Msa0680060:CDS 35.0%
CTAGTGGCATATGATTACTT+TGG + chr4_4:38838906-38838925 None:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - chr4_4:38838906-38838925 Msa0680060:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - chr4_4:38838935-38838954 Msa0680060:intron 35.0%
! CAATGAAACTAATGGTGATG+AGG - chr4_4:38838972-38838991 Msa0680060:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - chr4_4:38839022-38839041 Msa0680060:intron 35.0%
TAACAAGCTCTTCTTCAGTT+GGG + chr4_4:38837443-38837462 None:intergenic 35.0%
CCAAACAAGTGCTATAGATA+GGG - chr4_4:38837491-38837510 Msa0680060:three_prime_UTR 35.0%
ACACCATTGATGTCAATAAC+TGG + chr4_4:38837522-38837541 None:intergenic 35.0%
! CAATGGTTTTTCTTTTCACC+AGG - chr4_4:38837823-38837842 Msa0680060:CDS 35.0%
CTAATAGAACTACTGCTTGT+GGG - chr4_4:38837875-38837894 Msa0680060:CDS 35.0%
TCCGAAGAATAAACATAACC+AGG + chr4_4:38837922-38837941 None:intergenic 35.0%
TATTGGGGTGAAAAAAACCA+TGG - chr4_4:38837951-38837970 Msa0680060:CDS 35.0%
TATAAAGGAAAAGCTCCAAG+TGG - chr4_4:38837979-38837998 Msa0680060:intron 35.0%
!!! CATTTTGTTTTCCTTCCACT+TGG + chr4_4:38837997-38838016 None:intergenic 35.0%
CAAGTGGAAGGAAAACAAAA+TGG - chr4_4:38837995-38838014 Msa0680060:intron 35.0%
!! TGGATTGGTAGATACTTGAA+TGG + chr4_4:38838040-38838059 None:intergenic 35.0%
! GAGGAGTTTTCAAATCAAGT+AGG - chr4_4:38838506-38838525 Msa0680060:intron 35.0%
TGTCGAGTGTATGTAATATC+AGG - chr4_4:38838733-38838752 Msa0680060:CDS 35.0%
CTAGTGGCATATGATTACTT+TGG + chr4_4:38838906-38838925 None:intergenic 35.0%
AAGTAATCATATGCCACTAG+AGG - chr4_4:38838906-38838925 Msa0680060:intron 35.0%
GAGGTTCAAATAGCACAAAT+TGG - chr4_4:38838935-38838954 Msa0680060:intron 35.0%
! CAATGAAACTAATGGTGATG+AGG - chr4_4:38838972-38838991 Msa0680060:intron 35.0%
!! GGGACAGTGAACATTTTAAT+TGG - chr4_4:38839022-38839041 Msa0680060:intron 35.0%
CTAACAAGCTCTTCTTCAGT+TGG + chr4_4:38837444-38837463 None:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - chr4_4:38837490-38837509 Msa0680060:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + chr4_4:38837494-38837513 None:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - chr4_4:38837529-38837548 Msa0680060:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + chr4_4:38837720-38837739 None:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - chr4_4:38837774-38837793 Msa0680060:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + chr4_4:38837810-38837829 None:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + chr4_4:38837877-38837896 None:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - chr4_4:38837874-38837893 Msa0680060:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + chr4_4:38838069-38838088 None:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - chr4_4:38839001-38839020 Msa0680060:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - chr4_4:38839002-38839021 Msa0680060:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - chr4_4:38839045-38839064 Msa0680060:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + chr4_4:38839049-38839068 None:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - chr4_4:38839048-38839067 Msa0680060:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - chr4_4:38839049-38839068 Msa0680060:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + chr4_4:38839089-38839108 None:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + chr4_4:38839090-38839109 None:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + chr4_4:38839091-38839110 None:intergenic 40.0%
CTAACAAGCTCTTCTTCAGT+TGG + chr4_4:38837444-38837463 None:intergenic 40.0%
GCCAAACAAGTGCTATAGAT+AGG - chr4_4:38837490-38837509 Msa0680060:three_prime_UTR 40.0%
CCCTATCTATAGCACTTGTT+TGG + chr4_4:38837494-38837513 None:intergenic 40.0%
ACATCAATGGTGTAGAACCA+TGG - chr4_4:38837529-38837548 Msa0680060:three_prime_UTR 40.0%
TATGTTCCAAGCAGACAACT+CGG + chr4_4:38837720-38837739 None:intergenic 40.0%
!! ATGTGTTTTTGCAGCTCTTG+CGG - chr4_4:38837774-38837793 Msa0680060:CDS 40.0%
ACCATTGCTCTTTATCTTCG+CGG + chr4_4:38837810-38837829 None:intergenic 40.0%
! CCACAAGCAGTAGTTCTATT+AGG + chr4_4:38837877-38837896 None:intergenic 40.0%
CCTAATAGAACTACTGCTTG+TGG - chr4_4:38837874-38837893 Msa0680060:CDS 40.0%
TGCAATATATACCTGAGGTG+TGG + chr4_4:38838069-38838088 None:intergenic 40.0%
TCCAAGAATCACTATGGGAA+TGG - chr4_4:38839001-38839020 Msa0680060:intron 40.0%
CCAAGAATCACTATGGGAAT+GGG - chr4_4:38839002-38839021 Msa0680060:intron 40.0%
TCCTAATTAACTCCAGCTCA+TGG - chr4_4:38839045-38839064 Msa0680060:intron 40.0%
ACCATGAGCTGGAGTTAATT+AGG + chr4_4:38839049-38839068 None:intergenic 40.0%
TAATTAACTCCAGCTCATGG+TGG - chr4_4:38839048-38839067 Msa0680060:intron 40.0%
AATTAACTCCAGCTCATGGT+GGG - chr4_4:38839049-38839068 Msa0680060:intron 40.0%
AGTCGTGTTTATACTTGACG+GGG + chr4_4:38839089-38839108 None:intergenic 40.0%
GAGTCGTGTTTATACTTGAC+GGG + chr4_4:38839090-38839109 None:intergenic 40.0%
CGAGTCGTGTTTATACTTGA+CGG + chr4_4:38839091-38839110 None:intergenic 40.0%
GGAAGAAACGAAAACCAGGT+GGG + chr4_4:38837422-38837441 None:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + chr4_4:38837426-38837445 None:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + chr4_4:38837549-38837568 None:intergenic 45.0%
!! AGACAACTCGGTTGATGAAC+GGG + chr4_4:38837708-38837727 None:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + chr4_4:38837709-38837728 None:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - chr4_4:38837775-38837794 Msa0680060:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - chr4_4:38837843-38837862 Msa0680060:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - chr4_4:38837881-38837900 Msa0680060:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - chr4_4:38837885-38837904 Msa0680060:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - chr4_4:38837983-38838002 Msa0680060:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + chr4_4:38838838-38838857 None:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + chr4_4:38838848-38838867 None:intergenic 45.0%
ATGCCACTAGAGGTTGTAAG+AGG - chr4_4:38838916-38838935 Msa0680060:intron 45.0%
GAACCTCTTACAACCTCTAG+TGG + chr4_4:38838922-38838941 None:intergenic 45.0%
CCCATTCCCATAGTGATTCT+TGG + chr4_4:38839005-38839024 None:intergenic 45.0%
GGAAGAAACGAAAACCAGGT+GGG + chr4_4:38837422-38837441 None:intergenic 45.0%
GTTGGGAAGAAACGAAAACC+AGG + chr4_4:38837426-38837445 None:intergenic 45.0%
TACTTACTTGGGAGGTTCCA+TGG + chr4_4:38837549-38837568 None:intergenic 45.0%
!! AGACAACTCGGTTGATGAAC+GGG + chr4_4:38837708-38837727 None:intergenic 45.0%
!! CAGACAACTCGGTTGATGAA+CGG + chr4_4:38837709-38837728 None:intergenic 45.0%
!! TGTGTTTTTGCAGCTCTTGC+GGG - chr4_4:38837775-38837794 Msa0680060:CDS 45.0%
AGGTCAAGAGAGAGAAGCAA+GGG - chr4_4:38837843-38837862 Msa0680060:CDS 45.0%
GAACTACTGCTTGTGGGTAT+TGG - chr4_4:38837881-38837900 Msa0680060:CDS 45.0%
!! TACTGCTTGTGGGTATTGGA+AGG - chr4_4:38837885-38837904 Msa0680060:CDS 45.0%
AAGGAAAAGCTCCAAGTGGA+AGG - chr4_4:38837983-38838002 Msa0680060:intron 45.0%
TGAGTAGATGTGGCACCAAA+TGG + chr4_4:38838838-38838857 None:intergenic 45.0%
TGCATCCTGATGAGTAGATG+TGG + chr4_4:38838848-38838867 None:intergenic 45.0%
ATGCCACTAGAGGTTGTAAG+AGG - chr4_4:38838916-38838935 Msa0680060:intron 45.0%
GAACCTCTTACAACCTCTAG+TGG + chr4_4:38838922-38838941 None:intergenic 45.0%
CCCATTCCCATAGTGATTCT+TGG + chr4_4:38839005-38839024 None:intergenic 45.0%
ATGGAAGATACCTTCCCACC+TGG - chr4_4:38837405-38837424 Msa0680060:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + chr4_4:38837418-38837437 None:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + chr4_4:38837423-38837442 None:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + chr4_4:38837661-38837680 None:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - chr4_4:38837661-38837680 Msa0680060:CDS 50.0%
!! GACAACTCGGTTGATGAACG+GGG + chr4_4:38837707-38837726 None:intergenic 50.0%
CATCAACCGAGTTGTCTGCT+TGG - chr4_4:38837711-38837730 Msa0680060:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - chr4_4:38837806-38837825 Msa0680060:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + chr4_4:38837844-38837863 None:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - chr4_4:38837842-38837861 Msa0680060:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - chr4_4:38837844-38837863 Msa0680060:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - chr4_4:38837848-38837867 Msa0680060:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - chr4_4:38837892-38837911 Msa0680060:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - chr4_4:38838840-38838859 Msa0680060:CDS 50.0%
TTGAGTATCCCACCATGAGC+TGG + chr4_4:38839060-38839079 None:intergenic 50.0%
ATGGAAGATACCTTCCCACC+TGG - chr4_4:38837405-38837424 Msa0680060:three_prime_UTR 50.0%
GAAACGAAAACCAGGTGGGA+AGG + chr4_4:38837418-38837437 None:intergenic 50.0%
GGGAAGAAACGAAAACCAGG+TGG + chr4_4:38837423-38837442 None:intergenic 50.0%
TGAGGTCAGAGTTCGAACTC+TGG + chr4_4:38837661-38837680 None:intergenic 50.0%
GAGTTCGAACTCTGACCTCA+TGG - chr4_4:38837661-38837680 Msa0680060:CDS 50.0%
!! GACAACTCGGTTGATGAACG+GGG + chr4_4:38837707-38837726 None:intergenic 50.0%
CATCAACCGAGTTGTCTGCT+TGG - chr4_4:38837711-38837730 Msa0680060:CDS 50.0%
GCCGCGAAGATAAAGAGCAA+TGG - chr4_4:38837806-38837825 Msa0680060:CDS 50.0%
CTTGCTTCTCTCTCTTGACC+TGG + chr4_4:38837844-38837863 None:intergenic 50.0%
CAGGTCAAGAGAGAGAAGCA+AGG - chr4_4:38837842-38837861 Msa0680060:CDS 50.0%
GGTCAAGAGAGAGAAGCAAG+GGG - chr4_4:38837844-38837863 Msa0680060:CDS 50.0%
AAGAGAGAGAAGCAAGGGGA+GGG - chr4_4:38837848-38837867 Msa0680060:CDS 50.0%
!! TGTGGGTATTGGAAGGCAAC+AGG - chr4_4:38837892-38837911 Msa0680060:CDS 50.0%
!! TGGTGCCACATCTACTCATC+AGG - chr4_4:38838840-38838859 Msa0680060:CDS 50.0%
TTGAGTATCCCACCATGAGC+TGG + chr4_4:38839060-38839079 None:intergenic 50.0%
CAAGAGAGAGAAGCAAGGGG+AGG - chr4_4:38837847-38837866 Msa0680060:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - chr4_4:38837901-38837920 Msa0680060:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + chr4_4:38838055-38838074 None:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - chr4_4:38838055-38838074 Msa0680060:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + chr4_4:38838060-38838079 None:intergenic 55.0%
CAAGAGAGAGAAGCAAGGGG+AGG - chr4_4:38837847-38837866 Msa0680060:CDS 55.0%
TGGAAGGCAACAGGTTCTCC+TGG - chr4_4:38837901-38837920 Msa0680060:CDS 55.0%
! GAGGTGTGGCAGTGTTGGAT+TGG + chr4_4:38838055-38838074 None:intergenic 55.0%
ATCCAACACTGCCACACCTC+AGG - chr4_4:38838055-38838074 Msa0680060:intron 55.0%
TACCTGAGGTGTGGCAGTGT+TGG + chr4_4:38838060-38838079 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 38837378 38839325 38837378 ID=Msa0680060;Name=Msa0680060
chr4_4 mRNA 38837378 38839325 38837378 ID=Msa0680060-mRNA-1;Parent=Msa0680060;Name=Msa0680060-mRNA-1;_AED=0.15;_eAED=0.15;_QI=27|0.5|0.66|1|1|1|3|275|250
chr4_4 exon 38837378 38837991 38837378 ID=Msa0680060-mRNA-1:exon:9155;Parent=Msa0680060-mRNA-1
chr4_4 exon 38838659 38838915 38838659 ID=Msa0680060-mRNA-1:exon:9154;Parent=Msa0680060-mRNA-1
chr4_4 exon 38839142 38839325 38839142 ID=Msa0680060-mRNA-1:exon:9153;Parent=Msa0680060-mRNA-1
chr4_4 five_prime_UTR 38839299 38839325 38839299 ID=Msa0680060-mRNA-1:five_prime_utr;Parent=Msa0680060-mRNA-1
chr4_4 CDS 38839142 38839298 38839142 ID=Msa0680060-mRNA-1:cds;Parent=Msa0680060-mRNA-1
chr4_4 CDS 38838659 38838915 38838659 ID=Msa0680060-mRNA-1:cds;Parent=Msa0680060-mRNA-1
chr4_4 CDS 38837653 38837991 38837653 ID=Msa0680060-mRNA-1:cds;Parent=Msa0680060-mRNA-1
chr4_4 three_prime_UTR 38837378 38837652 38837378 ID=Msa0680060-mRNA-1:three_prime_utr;Parent=Msa0680060-mRNA-1
Gene Sequence

>Msa0680060

ATGGAAGATACCTTCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTATCTAAATAATAAATTACAAGGCCAAACAAGTGCTATAGATAGGGTTATTCCAGTTATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTTGCGGGAGAGCTTTGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGGTATTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCGGATAACAAAGTTATTGGGGTGAAAAAAACCATGGTGTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAATTGAGGAGAGAATTCAGCTTGTGTCGAGTGTATGTAATATCAGGAAGCTTTCGAGCATTTGATAGACGTCCATTAGAGAGAGAAAGAGTTAATCAATTACCGGTTAATGAGATTGATCAAAATCCATTTGGTGCCACATCTACTCATCAGGATGCAACAAGTTCATTTGAAATTTCTCAATTAGGGGGACTCCAAAGTAATCATATGCCACTAGAGGTTGTAAGAGGTTCAAATAGCACAAATTGGCATGTAAATAGTAACAATGAAACTAATGGTGATGAGGTTCAATTCCAAGAATCACTATGGGAATGGGACAGTGAACATTTTAATTGGTCCTAA
Protein sequence

>Msa0680060

MEDTFPPGFRFFPTEEELVSFYLNNKLQGQTSAIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQLRREFSLCRVYVISGSFRAFDRRPLERERVNQLPVNEIDQNPFGATSTHQDATSSFEISQLGGLQSNHMPLEVVRGSNSTNWHVNSNNETNGDEVQFQESLWEWDSEHFNWS*