Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601420 | XP_003606145.2 | 96.676 | 361 | 10 | 1 | 1 | 359 | 1 | 361 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202930 | Msa0601420 | 0.806128 | 9.561821e-50 | -8.615850e-47 |
| Msa0514610 | Msa0601420 | 0.801815 | 7.534123e-49 | -8.615850e-47 |
| Msa0601420 | Msa0641720 | 0.818244 | 2.168790e-52 | -8.615850e-47 |
| Msa0601420 | Msa0659790 | 0.813011 | 3.175403e-51 | -8.615850e-47 |
| Msa0601420 | Msa1371240 | 0.800429 | 1.447494e-48 | -8.615850e-47 |
| Msa0601420 | Msa1462470 | 0.809392 | 1.935998e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601420 | MtrunA17_Chr4g0026421 | 96.676 | 361 | 10 | 1 | 1 | 359 | 1 | 361 | 0.0 | 714 |
| Msa0601420 | MtrunA17_Chr2g0321351 | 73.451 | 339 | 84 | 3 | 19 | 357 | 28 | 360 | 0.0 | 521 |
| Msa0601420 | MtrunA17_Chr3g0136021 | 65.916 | 311 | 100 | 3 | 33 | 342 | 122 | 427 | 2.08e-151 | 433 |
| Msa0601420 | MtrunA17_Chr2g0321341 | 47.826 | 345 | 169 | 5 | 1 | 342 | 1 | 337 | 2.54e-119 | 348 |
| Msa0601420 | MtrunA17_Chr1g0178741 | 45.376 | 346 | 179 | 4 | 1 | 341 | 58 | 398 | 1.30e-103 | 310 |
| Msa0601420 | MtrunA17_Chr1g0178721 | 45.533 | 347 | 177 | 5 | 1 | 341 | 33 | 373 | 3.62e-103 | 308 |
| Msa0601420 | MtrunA17_Chr1g0171181 | 40.346 | 347 | 167 | 5 | 1 | 342 | 1 | 312 | 6.04e-85 | 259 |
| Msa0601420 | MtrunA17_Chr4g0029971 | 32.716 | 324 | 170 | 9 | 43 | 329 | 122 | 434 | 3.68e-43 | 155 |
| Msa0601420 | MtrunA17_Chr7g0263721 | 29.375 | 320 | 182 | 10 | 42 | 325 | 153 | 464 | 1.10e-34 | 133 |
| Msa0601420 | MtrunA17_Chr2g0321371 | 63.235 | 68 | 24 | 1 | 274 | 341 | 1 | 67 | 1.40e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601420 | AT3G44510.2 | 61.538 | 312 | 117 | 1 | 45 | 353 | 8 | 319 | 1.49e-147 | 420 |
| Msa0601420 | AT1G08310.1 | 60.197 | 304 | 116 | 2 | 43 | 345 | 8 | 307 | 5.19e-135 | 387 |
| Msa0601420 | AT1G08310.2 | 59.935 | 307 | 115 | 3 | 43 | 345 | 8 | 310 | 1.58e-133 | 384 |
| Msa0601420 | AT5G22460.2 | 44.767 | 344 | 183 | 3 | 1 | 342 | 1 | 339 | 1.46e-108 | 321 |
| Msa0601420 | AT5G22460.3 | 44.767 | 344 | 183 | 3 | 1 | 342 | 1 | 339 | 1.46e-108 | 321 |
| Msa0601420 | AT5G22460.1 | 44.767 | 344 | 183 | 3 | 1 | 342 | 1 | 339 | 1.46e-108 | 321 |
| Msa0601420 | AT3G48410.1 | 45.658 | 357 | 180 | 7 | 6 | 356 | 37 | 385 | 6.51e-103 | 308 |
| Msa0601420 | AT3G48410.2 | 45.658 | 357 | 180 | 7 | 6 | 356 | 79 | 427 | 2.40e-102 | 308 |
| Msa0601420 | AT3G03230.1 | 48.366 | 306 | 150 | 4 | 37 | 339 | 29 | 329 | 4.20e-102 | 305 |
| Msa0601420 | AT2G36290.2 | 43.840 | 349 | 186 | 5 | 1 | 344 | 3 | 346 | 3.72e-98 | 295 |
| Msa0601420 | AT2G36290.1 | 43.840 | 349 | 186 | 5 | 1 | 344 | 17 | 360 | 3.80e-98 | 295 |
| Msa0601420 | AT3G44510.3 | 62.871 | 202 | 75 | 0 | 45 | 246 | 8 | 209 | 1.04e-96 | 287 |
| Msa0601420 | AT3G03240.1 | 46.732 | 306 | 156 | 4 | 37 | 339 | 29 | 330 | 1.20e-96 | 291 |
| Msa0601420 | AT1G74300.1 | 42.042 | 333 | 184 | 5 | 14 | 341 | 16 | 344 | 1.03e-91 | 278 |
| Msa0601420 | AT3G44510.1 | 58.216 | 213 | 86 | 1 | 144 | 353 | 1 | 213 | 3.75e-91 | 272 |
| Msa0601420 | AT3G44510.5 | 58.216 | 213 | 86 | 1 | 144 | 353 | 1 | 213 | 3.75e-91 | 272 |
| Msa0601420 | AT3G44510.4 | 58.216 | 213 | 86 | 1 | 144 | 353 | 1 | 213 | 3.75e-91 | 272 |
| Msa0601420 | AT1G74280.1 | 41.100 | 309 | 176 | 4 | 41 | 344 | 57 | 364 | 8.94e-89 | 272 |
| Msa0601420 | AT1G08310.3 | 61.307 | 199 | 76 | 1 | 43 | 240 | 8 | 206 | 4.78e-88 | 266 |
| Msa0601420 | AT3G54240.1 | 38.728 | 346 | 201 | 5 | 1 | 341 | 5 | 344 | 1.69e-87 | 268 |
| Msa0601420 | AT1G74290.1 | 41.447 | 304 | 169 | 6 | 41 | 337 | 57 | 358 | 3.25e-82 | 255 |
| Msa0601420 | AT1G74300.2 | 44.309 | 246 | 134 | 2 | 98 | 341 | 1 | 245 | 1.21e-74 | 231 |
| Msa0601420 | AT3G09690.1 | 31.515 | 330 | 168 | 9 | 43 | 329 | 163 | 477 | 2.70e-39 | 146 |
| Msa0601420 | AT3G09690.2 | 31.515 | 330 | 168 | 9 | 43 | 329 | 163 | 477 | 2.70e-39 | 146 |
| Msa0601420 | AT5G02970.1 | 30.380 | 316 | 190 | 7 | 43 | 329 | 160 | 474 | 1.29e-38 | 144 |
Find 84 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGAATATTTCTTCTTAA+AGG | 0.166513 | 4_2:+44031005 | None:intergenic |
| TGACTACTTATAGATCTTAT+AGG | 0.191674 | 4_2:+44030845 | None:intergenic |
| ATCATTGTTGTTCATGGTTT+TGG | 0.204976 | 4_2:-44030476 | Msa0601420:CDS |
| GAAGTTGCAATTTACCTGTT+AGG | 0.236720 | 4_2:+44029212 | None:intergenic |
| CATAGCATCATTGTTGTTCA+TGG | 0.265095 | 4_2:-44030482 | Msa0601420:CDS |
| CACTATAATGTACAATTAAA+TGG | 0.265314 | 4_2:+44027471 | None:intergenic |
| TTCAGTGAGCGTTTGGGGTT+TGG | 0.285131 | 4_2:+44029350 | None:intergenic |
| GTGTTAATCATAGGTCTTCT+AGG | 0.323591 | 4_2:-44030662 | Msa0601420:CDS |
| TCAAATGAATCATTACTCTT+TGG | 0.340365 | 4_2:+44030608 | None:intergenic |
| ACAAATATTGATGATGATCT+AGG | 0.342121 | 4_2:+44027389 | None:intergenic |
| AATGGATTACTAAGCTTCAT+TGG | 0.356183 | 4_2:+44027623 | None:intergenic |
| GGATCGAAATTTCATGTGAT+TGG | 0.356577 | 4_2:-44029281 | Msa0601420:CDS |
| CATTTAATTGTACATTATAG+TGG | 0.365536 | 4_2:-44027470 | Msa0601420:CDS |
| CATTATGATCGAGCTGGTTA+TGG | 0.368010 | 4_2:-44029383 | Msa0601420:CDS |
| TGAGAGATTAAGAATTTGAT+TGG | 0.370309 | 4_2:+44030897 | None:intergenic |
| AAGTTGCAATTTACCTGTTA+GGG | 0.372204 | 4_2:+44029213 | None:intergenic |
| TGCTTTGATTGAATTTCAAC+AGG | 0.372527 | 4_2:-44030799 | Msa0601420:intron |
| CTAGCTGATCAGTTACAAAT+AGG | 0.376702 | 4_2:-44029302 | Msa0601420:CDS |
| GGATGACTGCCTTTGGCAAT+TGG | 0.381714 | 4_2:-44027655 | Msa0601420:CDS |
| TATGTGTAAATCACATTCAT+TGG | 0.385596 | 4_2:-44027293 | Msa0601420:three_prime_UTR |
| CCCTTCCTCAGAGTCTTGTA+AGG | 0.389296 | 4_2:-44028622 | Msa0601420:CDS |
| AGGTTGTTTACGACACTCTC+AGG | 0.399518 | 4_2:-44027685 | Msa0601420:CDS |
| ATTGTACATTATAGTGGCTT+AGG | 0.401252 | 4_2:-44027464 | Msa0601420:CDS |
| TCATGTGATTGGAGTTTCAA+TGG | 0.403080 | 4_2:-44029270 | Msa0601420:CDS |
| ACAGAAGTTCAGTTCACATT+TGG | 0.407040 | 4_2:-44027589 | Msa0601420:CDS |
| GGAAGGCCATTCATAGTTGA+TGG | 0.414424 | 4_2:+44028643 | None:intergenic |
| GTCTGAACTATATCCCTAAC+AGG | 0.419276 | 4_2:-44029226 | Msa0601420:intron |
| TAGTCCATTACGTTTCTTGT+TGG | 0.433587 | 4_2:-44027341 | Msa0601420:three_prime_UTR |
| AGGGTTTCCAATGCTTACTA+AGG | 0.433797 | 4_2:-44028432 | Msa0601420:intron |
| CATGTGATTGGAGTTTCAAT+GGG | 0.437296 | 4_2:-44029269 | Msa0601420:CDS |
| CACATTCATTGGTTGAAAAG+AGG | 0.437648 | 4_2:-44027282 | Msa0601420:three_prime_UTR |
| ACGACACTCTCAGGGGTGAT+TGG | 0.439296 | 4_2:-44027676 | Msa0601420:CDS |
| AAGTTCAGTTCACATTTGGC+AGG | 0.447362 | 4_2:-44027585 | Msa0601420:CDS |
| TTTCTTGCTTATAGAGAAAG+TGG | 0.467006 | 4_2:-44030527 | Msa0601420:CDS |
| CAACATTTGTGAAGGCTAGC+TGG | 0.469638 | 4_2:-44028686 | Msa0601420:intron |
| GAATCATTACTCTTTGGTGC+TGG | 0.470717 | 4_2:+44030614 | None:intergenic |
| TCTCGTTCGTTGAAGAATGC+TGG | 0.471001 | 4_2:+44028479 | None:intergenic |
| CAATATCATGAAGTTATAGA+TGG | 0.474649 | 4_2:-44027497 | Msa0601420:CDS |
| AAGAACAATACTTGTGGTGC+AGG | 0.474769 | 4_2:+44030431 | None:intergenic |
| GATGACTGCCTTTGGCAATT+GGG | 0.476135 | 4_2:-44027654 | Msa0601420:CDS |
| GGTGATTGGATGACTGCCTT+TGG | 0.480414 | 4_2:-44027662 | Msa0601420:CDS |
| GCAGTAATAGTGTTAATCAT+AGG | 0.496651 | 4_2:-44030671 | Msa0601420:CDS |
| ACTACTTGCAGGACAAATTG+AGG | 0.504704 | 4_2:-44027712 | Msa0601420:intron |
| TAAACCAACAAGAAACGTAA+TGG | 0.507432 | 4_2:+44027337 | None:intergenic |
| AATCATAGGTCTTCTAGGAA+TGG | 0.507432 | 4_2:-44030657 | Msa0601420:CDS |
| GATATAGTTCAGACAACTCC+AGG | 0.511826 | 4_2:+44029235 | None:intergenic |
| TAACTCACCTTAGTAAGCAT+TGG | 0.511905 | 4_2:+44028425 | None:intergenic |
| AATGAACCTTTGAATTTGAG+AGG | 0.517660 | 4_2:+44027541 | None:intergenic |
| CACCAACCATCAACTATGAA+TGG | 0.519645 | 4_2:-44028649 | Msa0601420:CDS |
| ACTTCATGATATTGTATCCA+TGG | 0.520270 | 4_2:+44027506 | None:intergenic |
| CAATGGGATCATATGCTACC+TGG | 0.523734 | 4_2:-44029253 | Msa0601420:CDS |
| CTCCTAGACTGTTACACTGG+TGG | 0.527323 | 4_2:-44028547 | Msa0601420:CDS |
| TTTCTATGACAGAATTTGAA+GGG | 0.536015 | 4_2:+44028507 | None:intergenic |
| GGCCATTCATAGTTGATGGT+TGG | 0.544228 | 4_2:+44028647 | None:intergenic |
| CCCTTACAAGACTCTGAGGA+AGG | 0.547701 | 4_2:+44028621 | None:intergenic |
| CCTTCCTCAGAGTCTTGTAA+GGG | 0.548790 | 4_2:-44028621 | Msa0601420:CDS |
| TCCTAGACTGTTACACTGGT+GGG | 0.553673 | 4_2:-44028546 | Msa0601420:CDS |
| GGTTGTTTACGACACTCTCA+GGG | 0.560342 | 4_2:-44027684 | Msa0601420:CDS |
| ACAAGAATTCAACTCAGTGA+TGG | 0.568319 | 4_2:-44030554 | Msa0601420:CDS |
| ATTCTCCTAGACTGTTACAC+TGG | 0.574127 | 4_2:-44028550 | Msa0601420:CDS |
| TAGTACCCTCTCAAATTCAA+AGG | 0.577110 | 4_2:-44027547 | Msa0601420:CDS |
| ATCAAATTCCCAATTGCCAA+AGG | 0.583905 | 4_2:+44027646 | None:intergenic |
| ATGAACCTTTGAATTTGAGA+GGG | 0.584011 | 4_2:+44027542 | None:intergenic |
| ATTCTGCATTATGATCGAGC+TGG | 0.586465 | 4_2:-44029389 | Msa0601420:CDS |
| TTGTAAGGGATGACTACAGA+AGG | 0.592021 | 4_2:-44028607 | Msa0601420:CDS |
| CAATTGATAATCAAATTCAA+AGG | 0.592403 | 4_2:-44030876 | Msa0601420:five_prime_UTR |
| TAGAGAAAGTGGTGTTACAA+AGG | 0.595237 | 4_2:-44030516 | Msa0601420:CDS |
| TATCATGAAGTTATAGATGG+TGG | 0.597838 | 4_2:-44027494 | Msa0601420:CDS |
| ACAAGACTCTGAGGAAGGGA+AGG | 0.598688 | 4_2:+44028626 | None:intergenic |
| AACTTATTAAGATTGCTATG+TGG | 0.599879 | 4_2:-44028583 | Msa0601420:CDS |
| CAGGAACTGATAGATGAGCT+AGG | 0.601687 | 4_2:-44029419 | Msa0601420:CDS |
| CTTAGGCGAGGCGATTCTGA+AGG | 0.603866 | 4_2:-44027447 | Msa0601420:CDS |
| ACTGGTGGGTGAGTCAAAAG+TGG | 0.606586 | 4_2:-44028532 | Msa0601420:CDS |
| ACCCACCAGTGTAACAGTCT+AGG | 0.608675 | 4_2:+44028545 | None:intergenic |
| TTAGTAAGCATTGGAAACCC+TGG | 0.610778 | 4_2:+44028434 | None:intergenic |
| TCATTTCAGAGAAGCTACCA+TGG | 0.610823 | 4_2:-44027523 | Msa0601420:CDS |
| ACATTATAGTGGCTTAGGCG+AGG | 0.611833 | 4_2:-44027459 | Msa0601420:CDS |
| AGTTCAGTTCACATTTGGCA+GGG | 0.616400 | 4_2:-44027584 | Msa0601420:CDS |
| GCAGGACAAATTGAGGCACC+AGG | 0.617002 | 4_2:-44027705 | Msa0601420:intron |
| TTTGTGAAGGCTAGCTGGTG+TGG | 0.620064 | 4_2:-44028681 | Msa0601420:intron |
| TGAGAGTGTCGTAAACAACC+TGG | 0.630265 | 4_2:+44027687 | None:intergenic |
| CCTTACAAGACTCTGAGGAA+GGG | 0.645316 | 4_2:+44028622 | None:intergenic |
| TCATCCCTTACAAGACTCTG+AGG | 0.687689 | 4_2:+44028617 | None:intergenic |
| GTTGTTTACGACACTCTCAG+GGG | 0.748439 | 4_2:-44027683 | Msa0601420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAAATTTAATTTT+GGG | + | chr4_2:44027362-44027381 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTAAATTTAATTT+TGG | + | chr4_2:44027363-44027382 | None:intergenic | 0.0% |
| !!! | TTTTTTGAAATTTTACATAT+TGG | - | chr4_2:44029477-44029496 | Msa0601420:intron | 10.0% |
| !!! | TTTTTGAAATTTTACATATT+GGG | - | chr4_2:44029478-44029497 | Msa0601420:intron | 10.0% |
| !! | ATTTCTAAATTCAAAAAATA+TGG | + | chr4_2:44029506-44029525 | None:intergenic | 10.0% |
| !!! | TATTTTTTGAATTTAGAAAT+AGG | - | chr4_2:44029506-44029525 | Msa0601420:intron | 10.0% |
| !!! | ATTTTTTGAATTTAGAAATA+GGG | - | chr4_2:44029507-44029526 | Msa0601420:intron | 10.0% |
| !!! | AATTTGATTTTGAATTTGAT+TGG | + | chr4_2:44027412-44027431 | None:intergenic | 15.0% |
| !! | TTAATTTCATTATATTGATC+TGG | - | chr4_2:44027942-44027961 | Msa0601420:intron | 15.0% |
| !! | TAATTTCATTATATTGATCT+GGG | - | chr4_2:44027943-44027962 | Msa0601420:intron | 15.0% |
| !! | TATATGATGTGTTTAATTAA+TGG | - | chr4_2:44027973-44027992 | Msa0601420:intron | 15.0% |
| !! | ATATGATGTGTTTAATTAAT+GGG | - | chr4_2:44027974-44027993 | Msa0601420:intron | 15.0% |
| !!! | TGTAAAATAATTTGACTTTA+TGG | - | chr4_2:44028255-44028274 | Msa0601420:intron | 15.0% |
| !! | AATTTAGTTGTTTATCTAAT+CGG | - | chr4_2:44028331-44028350 | Msa0601420:intron | 15.0% |
| !!! | TTTGTTTTATCTTATGTTAT+AGG | - | chr4_2:44028614-44028633 | Msa0601420:CDS | 15.0% |
| !!! | TTTTGAAATTTTACATATTG+GGG | - | chr4_2:44029479-44029498 | Msa0601420:intron | 15.0% |
| !!! | TTTTTTGAATTTAGAAATAG+GGG | - | chr4_2:44029508-44029527 | Msa0601420:intron | 15.0% |
| !! | AAAGGAATATTTCTTCTTAA+AGG | + | chr4_2:44027333-44027352 | None:intergenic | 20.0% |
| !!! | CAATTGATAATCAAATTCAA+AGG | - | chr4_2:44027459-44027478 | Msa0601420:CDS | 20.0% |
| !!! | TATAAGATCTTAGATTTTTC+AGG | - | chr4_2:44027628-44027647 | Msa0601420:CDS | 20.0% |
| !!! | TGATGAAGAAAATGATTTTA+TGG | - | chr4_2:44027753-44027772 | Msa0601420:intron | 20.0% |
| !!! | GGTTTTGATCTTAATTTTAA+GGG | - | chr4_2:44027995-44028014 | Msa0601420:intron | 20.0% |
| !! | ATTTAGTTGTTTATCTAATC+GGG | - | chr4_2:44028332-44028351 | Msa0601420:intron | 20.0% |
| !! | GGTGAATTGTTAAAAATAAA+CGG | - | chr4_2:44029540-44029559 | Msa0601420:intron | 20.0% |
| !! | GTGAATTGTTAAAAATAAAC+GGG | - | chr4_2:44029541-44029560 | Msa0601420:intron | 20.0% |
| !!! | AACATTGCATTTTTTAACAT+AGG | + | chr4_2:44029613-44029632 | None:intergenic | 20.0% |
| !! | AATGCATCTAATGATTTATT+AGG | - | chr4_2:44030110-44030129 | Msa0601420:intron | 20.0% |
| !! | ATGTCAATTTGCAAAAATAA+GGG | + | chr4_2:44030197-44030216 | None:intergenic | 20.0% |
| !! | TATGTCAATTTGCAAAAATA+AGG | + | chr4_2:44030198-44030217 | None:intergenic | 20.0% |
| !! | TTAAGATGACAAATTTCATA+GGG | + | chr4_2:44030363-44030382 | None:intergenic | 20.0% |
| !!! | AGAACAAATTTTTCAGTAAT+TGG | - | chr4_2:44030382-44030401 | Msa0601420:intron | 20.0% |
| !!! | GATAATTTAGAACTAGTAAT+AGG | + | chr4_2:44030484-44030503 | None:intergenic | 20.0% |
| !! | CACTATAATGTACAATTAAA+TGG | + | chr4_2:44030867-44030886 | None:intergenic | 20.0% |
| !! | CATTTAATTGTACATTATAG+TGG | - | chr4_2:44030865-44030884 | Msa0601420:five_prime_UTR | 20.0% |
| !!! | TCTTGTTGGTTTATTTTTTT+AGG | - | chr4_2:44031008-44031027 | Msa0601420:five_prime_UTR | 20.0% |
| !!! | TTTAATTTTGGGGAAAGAAA+AGG | + | chr4_2:44027351-44027370 | None:intergenic | 25.0% |
| ! | TGAGAGATTAAGAATTTGAT+TGG | + | chr4_2:44027441-44027460 | None:intergenic | 25.0% |
| ! | TGACTACTTATAGATCTTAT+AGG | + | chr4_2:44027493-44027512 | None:intergenic | 25.0% |
| ! | TCAAATGAATCATTACTCTT+TGG | + | chr4_2:44027730-44027749 | None:intergenic | 25.0% |
| !!! | GGGTTTTGATCTTAATTTTA+AGG | - | chr4_2:44027994-44028013 | Msa0601420:intron | 25.0% |
| ! | GAAATAGATGCAAAATGTTA+GGG | - | chr4_2:44028050-44028069 | Msa0601420:intron | 25.0% |
| !!! | ATAATATTTCTAGGTGTGTT+TGG | - | chr4_2:44028084-44028103 | Msa0601420:intron | 25.0% |
| !! | GACTTATTTGAGATTATCTA+CGG | - | chr4_2:44028110-44028129 | Msa0601420:intron | 25.0% |
| !! | AATTATTTTCATACGCTGTT+TGG | + | chr4_2:44028226-44028245 | None:intergenic | 25.0% |
| ! | CATACTTGGATAAAATCAAA+AGG | - | chr4_2:44028365-44028384 | Msa0601420:intron | 25.0% |
| !! | TCCTACAAAACAAACTTTTA+AGG | - | chr4_2:44028415-44028434 | Msa0601420:intron | 25.0% |
| !! | CCTACAAAACAAACTTTTAA+GGG | - | chr4_2:44028416-44028435 | Msa0601420:intron | 25.0% |
| !! | CTACAAAACAAACTTTTAAG+GGG | - | chr4_2:44028417-44028436 | Msa0601420:intron | 25.0% |
| ! | GACTTATTTGAATTATCTAC+TGG | - | chr4_2:44028474-44028493 | Msa0601420:CDS | 25.0% |
| ! | AATTGCAACTTCTAAATACT+AGG | - | chr4_2:44029134-44029153 | Msa0601420:intron | 25.0% |
| !! | AATTTTACCATCACTGAATT+TGG | - | chr4_2:44029218-44029237 | Msa0601420:intron | 25.0% |
| !! | ATTTTACCATCACTGAATTT+GGG | - | chr4_2:44029219-44029238 | Msa0601420:intron | 25.0% |
| ! | CTTAATCCAAAAAATATGCA+TGG | - | chr4_2:44029372-44029391 | Msa0601420:CDS | 25.0% |
| !!! | TGCATTTTTTAACATAGGAA+AGG | + | chr4_2:44029608-44029627 | None:intergenic | 25.0% |
| ! | TAAAAGTTCAACATTTGTGA+AGG | - | chr4_2:44029641-44029660 | Msa0601420:intron | 25.0% |
| ! | AACTTATTAAGATTGCTATG+TGG | - | chr4_2:44029752-44029771 | Msa0601420:intron | 25.0% |
| ! | TTTCTATGACAGAATTTGAA+GGG | + | chr4_2:44029831-44029850 | None:intergenic | 25.0% |
| !! | TTTTCTATGACAGAATTTGA+AGG | + | chr4_2:44029832-44029851 | None:intergenic | 25.0% |
| !!! | AAATTTTAGAGAGAATTCCA+GGG | - | chr4_2:44029884-44029903 | Msa0601420:intron | 25.0% |
| ! | ATTTGTCTATTCACTCATTT+AGG | + | chr4_2:44030137-44030156 | None:intergenic | 25.0% |
| ! | AAATGAGTGAATAGACAAAT+TGG | - | chr4_2:44030137-44030156 | Msa0601420:intron | 25.0% |
| ! | CTTAAGATGACAAATTTCAT+AGG | + | chr4_2:44030364-44030383 | None:intergenic | 25.0% |
| ! | CAATATCATGAAGTTATAGA+TGG | - | chr4_2:44030838-44030857 | Msa0601420:five_prime_UTR | 25.0% |
| !!! | ACAAATATTGATGATGATCT+AGG | + | chr4_2:44030949-44030968 | None:intergenic | 25.0% |
| ! | TATGTGTAAATCACATTCAT+TGG | - | chr4_2:44031042-44031061 | Msa0601420:five_prime_UTR | 25.0% |
| TGCTTTGATTGAATTTCAAC+AGG | - | chr4_2:44027536-44027555 | Msa0601420:CDS | 30.0% | |
| GCAGTAATAGTGTTAATCAT+AGG | - | chr4_2:44027664-44027683 | Msa0601420:CDS | 30.0% | |
| TTTCTTGCTTATAGAGAAAG+TGG | - | chr4_2:44027808-44027827 | Msa0601420:intron | 30.0% | |
| !! | ATCATTGTTGTTCATGGTTT+TGG | - | chr4_2:44027859-44027878 | Msa0601420:intron | 30.0% |
| GAAATCAAGAACAATACTTG+TGG | + | chr4_2:44027913-44027932 | None:intergenic | 30.0% | |
| TTGACATATTGTGAGATATG+TGG | - | chr4_2:44028020-44028039 | Msa0601420:intron | 30.0% | |
| TTGTGAGATATGTGGAAAAT+TGG | - | chr4_2:44028028-44028047 | Msa0601420:intron | 30.0% | |
| GGAAATAGATGCAAAATGTT+AGG | - | chr4_2:44028049-44028068 | Msa0601420:intron | 30.0% | |
| CCTAGAAATATTATGTGCAT+AGG | + | chr4_2:44028078-44028097 | None:intergenic | 30.0% | |
| CCTATGCACATAATATTTCT+AGG | - | chr4_2:44028075-44028094 | Msa0601420:intron | 30.0% | |
| !!! | CCCTTAAAAGTTTGTTTTGT+AGG | + | chr4_2:44028419-44028438 | None:intergenic | 30.0% |
| AATAAGTTCAAAAGAGCTCA+TGG | + | chr4_2:44028554-44028573 | None:intergenic | 30.0% | |
| AGTGGTTATAATGTTCTGTT+TGG | + | chr4_2:44028700-44028719 | None:intergenic | 30.0% | |
| AAGATAGACCATTCAATTCA+AGG | - | chr4_2:44028726-44028745 | Msa0601420:intron | 30.0% | |
| !! | CTTTTCATGGAGTATTTTTC+CGG | - | chr4_2:44028764-44028783 | Msa0601420:intron | 30.0% |
| !! | TTTTCATGGAGTATTTTTCC+GGG | - | chr4_2:44028765-44028784 | Msa0601420:intron | 30.0% |
| ACTTGTTTAGCATATTTCAG+CGG | + | chr4_2:44028877-44028896 | None:intergenic | 30.0% | |
| TAACATTGACATTGAATCAC+AGG | - | chr4_2:44028897-44028916 | Msa0601420:intron | 30.0% | |
| AAGTTGCAATTTACCTGTTA+GGG | + | chr4_2:44029125-44029144 | None:intergenic | 30.0% | |
| ATCAGTGAAAAAATTAGGAC+AGG | + | chr4_2:44029170-44029189 | None:intergenic | 30.0% | |
| CACGAATCAGTGAAAAAATT+AGG | + | chr4_2:44029175-44029194 | None:intergenic | 30.0% | |
| !!! | TTTCACTGATTCGTGATTTT+AGG | - | chr4_2:44029180-44029199 | Msa0601420:intron | 30.0% |
| ! | TTTTACCATCACTGAATTTG+GGG | - | chr4_2:44029220-44029239 | Msa0601420:intron | 30.0% |
| AAAGCAATACTTTAACGACA+TGG | + | chr4_2:44029341-44029360 | None:intergenic | 30.0% | |
| !!! | ATATGGCCATGCATATTTTT+TGG | + | chr4_2:44029381-44029400 | None:intergenic | 30.0% |
| ATTATCCATCACTGCATTTA+AGG | + | chr4_2:44029457-44029476 | None:intergenic | 30.0% | |
| !! | GAAATTTTAGAGAGAATTCC+AGG | - | chr4_2:44029883-44029902 | Msa0601420:intron | 30.0% |
| ! | TGTTCAGAGTATTATAGCAA+AGG | - | chr4_2:44029949-44029968 | Msa0601420:intron | 30.0% |
| TTTGACCAATGCTTACAATT+TGG | + | chr4_2:44030167-44030186 | None:intergenic | 30.0% | |
| AGAACTAGTAATAGGCAAAT+TGG | + | chr4_2:44030476-44030495 | None:intergenic | 30.0% | |
| ! | TTCCAGCAGATAGATATTTT+AGG | + | chr4_2:44030508-44030527 | None:intergenic | 30.0% |
| !! | AATGGATTACTAAGCTTCAT+TGG | + | chr4_2:44030715-44030734 | None:intergenic | 30.0% |
| !!! | CTGAACTTCTGTTATTTTGA+GGG | + | chr4_2:44030738-44030757 | None:intergenic | 30.0% |
| !!! | ACTGAACTTCTGTTATTTTG+AGG | + | chr4_2:44030739-44030758 | None:intergenic | 30.0% |
| ATGAACCTTTGAATTTGAGA+GGG | + | chr4_2:44030796-44030815 | None:intergenic | 30.0% | |
| AATGAACCTTTGAATTTGAG+AGG | + | chr4_2:44030797-44030816 | None:intergenic | 30.0% | |
| ACTTCATGATATTGTATCCA+TGG | + | chr4_2:44030832-44030851 | None:intergenic | 30.0% | |
| TATCATGAAGTTATAGATGG+TGG | - | chr4_2:44030841-44030860 | Msa0601420:five_prime_UTR | 30.0% | |
| ATTGTACATTATAGTGGCTT+AGG | - | chr4_2:44030871-44030890 | Msa0601420:five_prime_UTR | 30.0% | |
| TAAACCAACAAGAAACGTAA+TGG | + | chr4_2:44031001-44031020 | None:intergenic | 30.0% | |
| !!! | GATGCTGTCATCTTTGTTTT+TGG | - | chr4_2:44027271-44027290 | Msa0601420:three_prime_UTR | 35.0% |
| !!! | GATCTTAGATTTTTCAGGCA+TGG | - | chr4_2:44027633-44027652 | Msa0601420:CDS | 35.0% |
| GTGTTAATCATAGGTCTTCT+AGG | - | chr4_2:44027673-44027692 | Msa0601420:CDS | 35.0% | |
| ! | AATCATAGGTCTTCTAGGAA+TGG | - | chr4_2:44027678-44027697 | Msa0601420:CDS | 35.0% |
| ACAAGAATTCAACTCAGTGA+TGG | - | chr4_2:44027781-44027800 | Msa0601420:intron | 35.0% | |
| !! | TAGAGAAAGTGGTGTTACAA+AGG | - | chr4_2:44027819-44027838 | Msa0601420:intron | 35.0% |
| ! | CATAGCATCATTGTTGTTCA+TGG | - | chr4_2:44027853-44027872 | Msa0601420:intron | 35.0% |
| ATAGCATTTGTGAGATTGTG+TGG | - | chr4_2:44028135-44028154 | Msa0601420:intron | 35.0% | |
| TAGCATTTGTGAGATTGTGT+GGG | - | chr4_2:44028136-44028155 | Msa0601420:intron | 35.0% | |
| !! | AAACTTTTAAGGGGAAGAGA+TGG | - | chr4_2:44028426-44028445 | Msa0601420:intron | 35.0% |
| CAATCTAAACATACCCTAAG+TGG | + | chr4_2:44028455-44028474 | None:intergenic | 35.0% | |
| ACTGCTTTCATAAGTGATCA+TGG | + | chr4_2:44028589-44028608 | None:intergenic | 35.0% | |
| GATCACTTATGAAAGCAGTT+TGG | - | chr4_2:44028590-44028609 | Msa0601420:CDS | 35.0% | |
| ATGGTCTATCTTCTGAATAG+TGG | + | chr4_2:44028718-44028737 | None:intergenic | 35.0% | |
| !!! | CTTGACAGTTAGTCTTTTCA+TGG | - | chr4_2:44028751-44028770 | Msa0601420:intron | 35.0% |
| ATTACAATTTACAACTCGCC+CGG | + | chr4_2:44028786-44028805 | None:intergenic | 35.0% | |
| AGTCTCATGCATTGAAAAGA+TGG | + | chr4_2:44028826-44028845 | None:intergenic | 35.0% | |
| ! | CTTTTCAATGCATGAGACTT+AGG | - | chr4_2:44028827-44028846 | Msa0601420:intron | 35.0% |
| CTAGCTGATCAGTTACAAAT+AGG | - | chr4_2:44029033-44029052 | Msa0601420:intron | 35.0% | |
| GGATCGAAATTTCATGTGAT+TGG | - | chr4_2:44029054-44029073 | Msa0601420:intron | 35.0% | |
| TCATGTGATTGGAGTTTCAA+TGG | - | chr4_2:44029065-44029084 | Msa0601420:intron | 35.0% | |
| CATGTGATTGGAGTTTCAAT+GGG | - | chr4_2:44029066-44029085 | Msa0601420:intron | 35.0% | |
| GAAGTTGCAATTTACCTGTT+AGG | + | chr4_2:44029126-44029145 | None:intergenic | 35.0% | |
| TAGCTAGCTCATTATTCAAC+GGG | + | chr4_2:44029265-44029284 | None:intergenic | 35.0% | |
| CTAGCTAGCTCATTATTCAA+CGG | + | chr4_2:44029266-44029285 | None:intergenic | 35.0% | |
| TTGAATAATGAGCTAGCTAG+TGG | - | chr4_2:44029266-44029285 | Msa0601420:CDS | 35.0% | |
| GTTACAGGATAATGCATATG+TGG | - | chr4_2:44029292-44029311 | Msa0601420:CDS | 35.0% | |
| !! | TGTCAAGTTGAATAATGAGC+TGG | + | chr4_2:44029418-44029437 | None:intergenic | 35.0% |
| ATAAGCCTTAAATGCAGTGA+TGG | - | chr4_2:44029449-44029468 | Msa0601420:intron | 35.0% | |
| TAGAAATAGGGGACTAAAAG+TGG | - | chr4_2:44029519-44029538 | Msa0601420:intron | 35.0% | |
| TAACTCACCTTAGTAAGCAT+TGG | + | chr4_2:44029913-44029932 | None:intergenic | 35.0% | |
| ! | ATAGCAAAGGTTTTACATCG+TGG | - | chr4_2:44029962-44029981 | Msa0601420:intron | 35.0% |
| ACTTGGATCGTAGTTAAATG+TGG | - | chr4_2:44029997-44030016 | Msa0601420:intron | 35.0% | |
| !! | ATCTGTTAACTTGCTGTCAA+GGG | - | chr4_2:44030257-44030276 | Msa0601420:intron | 35.0% |
| GAAATTAGTCGCTAATGAGT+TGG | + | chr4_2:44030341-44030360 | None:intergenic | 35.0% | |
| AAAATTGGTCCTTAGCAACA+TGG | - | chr4_2:44030429-44030448 | Msa0601420:intron | 35.0% | |
| ACATCAATTCCATGTTGCTA+AGG | + | chr4_2:44030441-44030460 | None:intergenic | 35.0% | |
| TTAGCAACATGGAATTGATG+TGG | - | chr4_2:44030440-44030459 | Msa0601420:intron | 35.0% | |
| CTCCTAAAATATCTATCTGC+TGG | - | chr4_2:44030503-44030522 | Msa0601420:CDS | 35.0% | |
| GCATGTCAGTTAAACTCTTA+CGG | - | chr4_2:44030565-44030584 | Msa0601420:CDS | 35.0% | |
| TGTGATATGTTACTACTTGC+AGG | - | chr4_2:44030612-44030631 | Msa0601420:CDS | 35.0% | |
| ATCAAATTCCCAATTGCCAA+AGG | + | chr4_2:44030692-44030711 | None:intergenic | 35.0% | |
| !!! | CTTCTGTTATTTTGAGGGAA+TGG | + | chr4_2:44030733-44030752 | None:intergenic | 35.0% |
| ACAGAAGTTCAGTTCACATT+TGG | - | chr4_2:44030746-44030765 | Msa0601420:intron | 35.0% | |
| TAGTACCCTCTCAAATTCAA+AGG | - | chr4_2:44030788-44030807 | Msa0601420:intron | 35.0% | |
| !!! | ATTCTGAAGGCACTTTTACT+TGG | - | chr4_2:44030901-44030920 | Msa0601420:five_prime_UTR | 35.0% |
| !!! | TTCTGAAGGCACTTTTACTT+GGG | - | chr4_2:44030902-44030921 | Msa0601420:five_prime_UTR | 35.0% |
| TAGTCCATTACGTTTCTTGT+TGG | - | chr4_2:44030994-44031013 | Msa0601420:five_prime_UTR | 35.0% | |
| ! | CACATTCATTGGTTGAAAAG+AGG | - | chr4_2:44031053-44031072 | Msa0601420:five_prime_UTR | 35.0% |
| ! | GAATCATTACTCTTTGGTGC+TGG | + | chr4_2:44027724-44027743 | None:intergenic | 40.0% |
| AAGAACAATACTTGTGGTGC+AGG | + | chr4_2:44027907-44027926 | None:intergenic | 40.0% | |
| AGATTGTGTGGGAGAATTTG+CGG | - | chr4_2:44028147-44028166 | Msa0601420:intron | 40.0% | |
| TCTAAACATACCCTAAGTGG+TGG | + | chr4_2:44028452-44028471 | None:intergenic | 40.0% | |
| TAAACACTTGTGAGACTGTG+TGG | - | chr4_2:44028499-44028518 | Msa0601420:CDS | 40.0% | |
| AAACACTTGTGAGACTGTGT+GGG | - | chr4_2:44028500-44028519 | Msa0601420:CDS | 40.0% | |
| AAGTGATCATGGAGAGCTTA+TGG | + | chr4_2:44028578-44028597 | None:intergenic | 40.0% | |
| GTCAAGAGCCTTGAATTGAA+TGG | + | chr4_2:44028737-44028756 | None:intergenic | 40.0% | |
| ATTCTGCATTATGATCGAGC+TGG | - | chr4_2:44028946-44028965 | Msa0601420:intron | 40.0% | |
| CATTATGATCGAGCTGGTTA+TGG | - | chr4_2:44028952-44028971 | Msa0601420:intron | 40.0% | |
| !! | TCACTTTTCAGTGAGCGTTT+GGG | + | chr4_2:44028994-44029013 | None:intergenic | 40.0% |
| !! | TTCACTTTTCAGTGAGCGTT+TGG | + | chr4_2:44028995-44029014 | None:intergenic | 40.0% |
| GATATAGTTCAGACAACTCC+AGG | + | chr4_2:44029103-44029122 | None:intergenic | 40.0% | |
| GTCTGAACTATATCCCTAAC+AGG | - | chr4_2:44029109-44029128 | Msa0601420:intron | 40.0% | |
| TTATGCCCCAAATTCAGTGA+TGG | + | chr4_2:44029228-44029247 | None:intergenic | 40.0% | |
| CACCAACCATCAACTATGAA+TGG | - | chr4_2:44029686-44029705 | Msa0601420:intron | 40.0% | |
| TTGTAAGGGATGACTACAGA+AGG | - | chr4_2:44029728-44029747 | Msa0601420:intron | 40.0% | |
| ATTCTCCTAGACTGTTACAC+TGG | - | chr4_2:44029785-44029804 | Msa0601420:intron | 40.0% | |
| !! | TTAGTAAGCATTGGAAACCC+TGG | + | chr4_2:44029904-44029923 | None:intergenic | 40.0% |
| AGGGTTTCCAATGCTTACTA+AGG | - | chr4_2:44029903-44029922 | Msa0601420:intron | 40.0% | |
| GTCCTCCAAATTGTAAGCAT+TGG | - | chr4_2:44030159-44030178 | Msa0601420:intron | 40.0% | |
| GACCAATGCTTACAATTTGG+AGG | + | chr4_2:44030164-44030183 | None:intergenic | 40.0% | |
| !! | CATCTGTTAACTTGCTGTCA+AGG | - | chr4_2:44030256-44030275 | Msa0601420:intron | 40.0% |
| CAGTTAACATGTCATCACCA+TGG | + | chr4_2:44030283-44030302 | None:intergenic | 40.0% | |
| ! | CATGGTGATGACATGTTAAC+TGG | - | chr4_2:44030281-44030300 | Msa0601420:intron | 40.0% |
| ! | AATTTTCCGGTAACCAATCC+AGG | + | chr4_2:44030415-44030434 | None:intergenic | 40.0% |
| !! | TGGATTGGTTACCGGAAAAT+TGG | - | chr4_2:44030414-44030433 | Msa0601420:intron | 40.0% |
| ! | GTTGCTAAGGACCAATTTTC+CGG | + | chr4_2:44030428-44030447 | None:intergenic | 40.0% |
| ACTACTTGCAGGACAAATTG+AGG | - | chr4_2:44030623-44030642 | Msa0601420:CDS | 40.0% | |
| AAGTTCAGTTCACATTTGGC+AGG | - | chr4_2:44030750-44030769 | Msa0601420:intron | 40.0% | |
| AGTTCAGTTCACATTTGGCA+GGG | - | chr4_2:44030751-44030770 | Msa0601420:intron | 40.0% | |
| TCATTTCAGAGAAGCTACCA+TGG | - | chr4_2:44030812-44030831 | Msa0601420:five_prime_UTR | 40.0% | |
| !!! | TCTGAAGGCACTTTTACTTG+GGG | - | chr4_2:44030903-44030922 | Msa0601420:five_prime_UTR | 40.0% |
| CGGGTAGCTATTCACATACT+TGG | - | chr4_2:44028351-44028370 | Msa0601420:intron | 45.0% | |
| CAGGAACTGATAGATGAGCT+AGG | - | chr4_2:44028916-44028935 | Msa0601420:intron | 45.0% | |
| ! | CACTTTTCAGTGAGCGTTTG+GGG | + | chr4_2:44028993-44029012 | None:intergenic | 45.0% |
| CAATGGGATCATATGCTACC+TGG | - | chr4_2:44029082-44029101 | Msa0601420:intron | 45.0% | |
| TGGCAAGTCACTAGGTGATA+TGG | + | chr4_2:44029398-44029417 | None:intergenic | 45.0% | |
| TAATGAGCTGGCAAGTCACT+AGG | + | chr4_2:44029406-44029425 | None:intergenic | 45.0% | |
| CAACATTTGTGAAGGCTAGC+TGG | - | chr4_2:44029649-44029668 | Msa0601420:intron | 45.0% | |
| !! | GGCCATTCATAGTTGATGGT+TGG | + | chr4_2:44029691-44029710 | None:intergenic | 45.0% |
| GGAAGGCCATTCATAGTTGA+TGG | + | chr4_2:44029695-44029714 | None:intergenic | 45.0% | |
| ! | CCTTACAAGACTCTGAGGAA+GGG | + | chr4_2:44029716-44029735 | None:intergenic | 45.0% |
| ! | CCTTCCTCAGAGTCTTGTAA+GGG | - | chr4_2:44029714-44029733 | Msa0601420:intron | 45.0% |
| TCATCCCTTACAAGACTCTG+AGG | + | chr4_2:44029721-44029740 | None:intergenic | 45.0% | |
| TCCTAGACTGTTACACTGGT+GGG | - | chr4_2:44029789-44029808 | Msa0601420:intron | 45.0% | |
| TCTCGTTCGTTGAAGAATGC+TGG | + | chr4_2:44029859-44029878 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTCGTAAACAACC+TGG | + | chr4_2:44030651-44030670 | None:intergenic | 45.0% |
| AGGTTGTTTACGACACTCTC+AGG | - | chr4_2:44030650-44030669 | Msa0601420:CDS | 45.0% | |
| GGTTGTTTACGACACTCTCA+GGG | - | chr4_2:44030651-44030670 | Msa0601420:CDS | 45.0% | |
| GTTGTTTACGACACTCTCAG+GGG | - | chr4_2:44030652-44030671 | Msa0601420:CDS | 45.0% | |
| GATGACTGCCTTTGGCAATT+GGG | - | chr4_2:44030681-44030700 | Msa0601420:CDS | 45.0% | |
| ACATTATAGTGGCTTAGGCG+AGG | - | chr4_2:44030876-44030895 | Msa0601420:five_prime_UTR | 45.0% | |
| !!! | TTTTTTTAAATTTAATTTTG+GGG | + | chr4_2:44027361-44027380 | None:intergenic | 5.0% |
| GAAGAGATGGCCACCACTTA+GGG | - | chr4_2:44028439-44028458 | Msa0601420:CDS | 50.0% | |
| ! | TTCAGTGAGCGTTTGGGGTT+TGG | + | chr4_2:44028988-44029007 | None:intergenic | 50.0% |
| GCTAGCTAGTGGCAAGTTAC+AGG | - | chr4_2:44029277-44029296 | Msa0601420:CDS | 50.0% | |
| ! | TTTGTGAAGGCTAGCTGGTG+TGG | - | chr4_2:44029654-44029673 | Msa0601420:intron | 50.0% |
| ! | ACAAGACTCTGAGGAAGGGA+AGG | + | chr4_2:44029712-44029731 | None:intergenic | 50.0% |
| ! | CCCTTCCTCAGAGTCTTGTA+AGG | - | chr4_2:44029713-44029732 | Msa0601420:intron | 50.0% |
| ! | CCCTTACAAGACTCTGAGGA+AGG | + | chr4_2:44029717-44029736 | None:intergenic | 50.0% |
| CTCCTAGACTGTTACACTGG+TGG | - | chr4_2:44029788-44029807 | Msa0601420:intron | 50.0% | |
| ACCCACCAGTGTAACAGTCT+AGG | + | chr4_2:44029793-44029812 | None:intergenic | 50.0% | |
| ! | ACTGGTGGGTGAGTCAAAAG+TGG | - | chr4_2:44029803-44029822 | Msa0601420:intron | 50.0% |
| !! | TAACTTGCTGTCAAGGGCCA+TGG | - | chr4_2:44030263-44030282 | Msa0601420:intron | 50.0% |
| TCAGTAATTGGTCATGCGCC+TGG | - | chr4_2:44030394-44030413 | Msa0601420:intron | 50.0% | |
| AATTGGTCATGCGCCTGGAT+TGG | - | chr4_2:44030399-44030418 | Msa0601420:intron | 50.0% | |
| GGTGATTGGATGACTGCCTT+TGG | - | chr4_2:44030673-44030692 | Msa0601420:CDS | 50.0% | |
| GGATGACTGCCTTTGGCAAT+TGG | - | chr4_2:44030680-44030699 | Msa0601420:CDS | 50.0% | |
| GGAAGAGATGGCCACCACTT+AGG | - | chr4_2:44028438-44028457 | Msa0601420:CDS | 55.0% | |
| CGTGGCTGCATCACAACACT+TGG | - | chr4_2:44029980-44029999 | Msa0601420:intron | 55.0% | |
| !! | CATGCGCCTGGATTGGTTAC+CGG | - | chr4_2:44030406-44030425 | Msa0601420:intron | 55.0% |
| ! | GCAGGACAAATTGAGGCACC+AGG | - | chr4_2:44030630-44030649 | Msa0601420:CDS | 55.0% |
| ACGACACTCTCAGGGGTGAT+TGG | - | chr4_2:44030659-44030678 | Msa0601420:CDS | 55.0% | |
| CTTAGGCGAGGCGATTCTGA+AGG | - | chr4_2:44030888-44030907 | Msa0601420:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 44027255 | 44031102 | 44027255 | ID=Msa0601420;Name=Msa0601420 |
| chr4_2 | mRNA | 44027255 | 44031102 | 44027255 | ID=Msa0601420-mRNA-1;Parent=Msa0601420;Name=Msa0601420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=305|1|1|1|0.75|0.6|5|127|359 |
| chr4_2 | exon | 44027255 | 44027723 | 44027255 | ID=Msa0601420-mRNA-1:exon:9673;Parent=Msa0601420-mRNA-1 |
| chr4_2 | exon | 44028433 | 44028694 | 44028433 | ID=Msa0601420-mRNA-1:exon:9672;Parent=Msa0601420-mRNA-1 |
| chr4_2 | exon | 44029227 | 44029438 | 44029227 | ID=Msa0601420-mRNA-1:exon:9671;Parent=Msa0601420-mRNA-1 |
| chr4_2 | exon | 44030442 | 44030707 | 44030442 | ID=Msa0601420-mRNA-1:exon:9670;Parent=Msa0601420-mRNA-1 |
| chr4_2 | exon | 44030800 | 44031102 | 44030800 | ID=Msa0601420-mRNA-1:exon:9669;Parent=Msa0601420-mRNA-1 |
| chr4_2 | five_prime_UTR | 44030800 | 44031102 | 44030800 | ID=Msa0601420-mRNA-1:five_prime_utr;Parent=Msa0601420-mRNA-1 |
| chr4_2 | five_prime_UTR | 44030706 | 44030707 | 44030706 | ID=Msa0601420-mRNA-1:five_prime_utr;Parent=Msa0601420-mRNA-1 |
| chr4_2 | CDS | 44030442 | 44030705 | 44030442 | ID=Msa0601420-mRNA-1:cds;Parent=Msa0601420-mRNA-1 |
| chr4_2 | CDS | 44029227 | 44029438 | 44029227 | ID=Msa0601420-mRNA-1:cds;Parent=Msa0601420-mRNA-1 |
| chr4_2 | CDS | 44028433 | 44028694 | 44028433 | ID=Msa0601420-mRNA-1:cds;Parent=Msa0601420-mRNA-1 |
| chr4_2 | CDS | 44027382 | 44027723 | 44027382 | ID=Msa0601420-mRNA-1:cds;Parent=Msa0601420-mRNA-1 |
| chr4_2 | three_prime_UTR | 44027255 | 44027381 | 44027255 | ID=Msa0601420-mRNA-1:three_prime_utr;Parent=Msa0601420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
