AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514610 MtrunA17_Chr3g0123051 99.616 521 2 0 1 521 1 521 0.0 1072
Msa0514610 MtrunA17_Chr6g0458891 68.138 521 155 4 1 520 1 511 0.0 728
Msa0514610 MtrunA17_Chr3g0119261 64.015 528 171 5 1 513 1 524 0.0 658
Msa0514610 MtrunA17_Chr7g0264871 65.166 422 147 0 83 504 42 463 0.0 577
Msa0514610 MtrunA17_Chr1g0180401 59.322 472 185 3 37 506 16 482 0.0 569
Msa0514610 MtrunA17_Chr1g0210311 53.125 512 216 3 1 512 1 488 0.0 561
Msa0514610 MtrunA17_Chr1g0148671 52.918 514 216 4 1 512 1 490 0.0 546
Msa0514610 MtrunA17_Chr3g0138441 52.529 514 225 4 1 512 1 497 0.0 540
Msa0514610 MtrunA17_Chr4g0062821 51.093 503 224 5 1 500 1 484 0.0 519
Msa0514610 MtrunA17_Chr1g0211361 41.337 404 235 1 103 506 39 440 2.73e-117 353
Msa0514610 MtrunA17_Chr7g0273431 88.136 59 7 0 22 80 58 116 1.62e-26 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514610 AT3G26020.2 72.157 510 136 3 1 504 1 510 0.0 735
Msa0514610 AT3G26020.5 72.157 510 136 3 1 504 1 510 0.0 735
Msa0514610 AT3G26020.1 72.157 510 136 3 1 504 1 510 0.0 735
Msa0514610 AT3G26020.6 72.157 510 136 3 1 504 1 510 0.0 735
Msa0514610 AT1G13460.2 74.514 463 115 1 44 506 32 491 0.0 724
Msa0514610 AT1G13460.1 74.514 463 115 1 44 506 32 491 0.0 724
Msa0514610 AT4G15415.1 65.497 513 171 4 1 513 1 507 0.0 685
Msa0514610 AT4G15415.4 65.497 513 171 4 1 513 1 507 0.0 685
Msa0514610 AT4G15415.2 65.497 513 171 4 1 513 1 507 0.0 685
Msa0514610 AT4G15415.5 65.497 513 171 4 1 513 1 507 0.0 685
Msa0514610 AT3G21650.1 61.959 531 182 4 1 513 1 529 0.0 661
Msa0514610 AT3G21650.2 61.959 531 182 4 1 513 1 529 0.0 661
Msa0514610 AT3G26020.4 61.290 558 133 5 1 504 1 529 0.0 639
Msa0514610 AT3G26020.7 62.107 541 139 7 1 504 1 512 0.0 621
Msa0514610 AT3G26020.8 62.107 541 139 7 1 504 1 512 0.0 621
Msa0514610 AT3G26020.3 62.107 541 139 7 1 504 1 512 0.0 621
Msa0514610 AT3G26030.1 56.832 505 187 5 1 503 1 476 0.0 590
Msa0514610 AT3G09880.1 56.920 513 191 4 1 506 1 490 0.0 583
Msa0514610 AT5G03470.1 56.461 503 201 4 1 502 1 486 0.0 564
Msa0514610 AT5G25510.1 51.631 521 227 5 1 520 1 497 0.0 531
Msa0514610 AT4G15415.3 64.851 404 136 4 1 404 1 398 0.0 528
Msa0514610 AT3G54930.2 55.794 466 194 2 40 503 41 496 0.0 521
Msa0514610 AT3G54930.1 55.794 466 194 2 40 503 41 496 0.0 521
Msa0514610 AT3G54930.3 55.041 367 153 2 40 404 41 397 7.08e-136 399

Find 117 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAGCATAAATTGTTTC+TGG 0.170362 3_4:+65361898 Msa0514610:CDS
ATGAAGCTTTACCAGCATTT+AGG 0.170397 3_4:+65361246 Msa0514610:CDS
GAAAATTTAATACCTGAAAA+TGG 0.199312 3_4:-65362192 None:intergenic
ATTCAAGAAATTGCCTTTCT+TGG 0.200582 3_4:-65365761 None:intergenic
GCTTAATCTTCTTTGTTGTT+TGG 0.228935 3_4:-65360650 None:intergenic
CTTAATCTTCTTTGTTGTTT+GGG 0.233357 3_4:-65360649 None:intergenic
CCCTTACCTAGATAAGAAAA+AGG 0.235090 3_4:+65360855 Msa0514610:five_prime_UTR
TGAAGCTTTACCAGCATTTA+GGG 0.264284 3_4:+65361247 Msa0514610:CDS
TCCTTTGAACTATTTGTTAT+CGG 0.271122 3_4:-65362058 None:intergenic
CAAACTTTGATTCACCGAAT+TGG 0.282750 3_4:+65360772 Msa0514610:five_prime_UTR
AGTTCAATTCAAAATCATTA+TGG 0.295945 3_4:+65360806 Msa0514610:five_prime_UTR
TTGATGAACTATGTTCAAAA+AGG 0.297427 3_4:+65360983 Msa0514610:exon
ATGTCTTTGCATCGGATCTA+TGG 0.305697 3_4:+65361728 Msa0514610:CDS
TCGGATCTATGGCAAGTTAA+TGG 0.326598 3_4:+65361739 Msa0514610:CDS
GAACATTTAAAGTCAAACTA+TGG 0.333782 3_4:-65365453 None:intergenic
ATTCTGGGGAGTATCATTAA+TGG 0.341716 3_4:+65361857 Msa0514610:CDS
CATTGATGGCGTTGAATTAG+AGG 0.343144 3_4:+65361520 Msa0514610:CDS
CTTTGACATTCACTTCCTAT+AGG 0.349671 3_4:+65365785 Msa0514610:three_prime_UTR
CAGAATCATCATCTTCATAT+CGG 0.351588 3_4:+65360895 Msa0514610:five_prime_UTR
AAACTTTGATTCACCGAATT+GGG 0.352067 3_4:+65360773 Msa0514610:five_prime_UTR
CCATTGGAATTCTCATTCAT+AGG 0.353655 3_4:-65361209 None:intergenic
ACCATACATCGCTGGAATTC+TGG 0.359106 3_4:-65362130 None:intergenic
CTCTCTTTCTCTAGGATCTT+CGG 0.365168 3_4:-65361696 None:intergenic
AATTTATGCTCTTCTTTCAA+TGG 0.371325 3_4:-65361890 None:intergenic
AAAATTTAATACCTGAAAAT+GGG 0.390719 3_4:-65362191 None:intergenic
CAACCTGGGAGTAGCAAAAC+TGG 0.401143 3_4:+65361116 Msa0514610:CDS
CGATATGAAGATGATGATTC+TGG 0.402321 3_4:-65360894 None:intergenic
CGTGAGAATAAGCTCATTGA+TGG 0.406564 3_4:+65361506 Msa0514610:CDS
TTATTGCATTACTCAGTTTG+TGG 0.408341 3_4:+65361982 Msa0514610:CDS
AAAATGCACTAGTTAGGCTT+TGG 0.408752 3_4:-65365862 None:intergenic
GGAGATTAAGAGACAAGCTT+TGG 0.411887 3_4:+65361370 Msa0514610:CDS
CGGAAAGAGCTTTGTTCTTG+TGG 0.412229 3_4:+65365323 Msa0514610:CDS
ATAAGGAAAATGCACTAGTT+AGG 0.419004 3_4:-65365868 None:intergenic
TGGGTTGAAAAGAGAGAGAA+AGG 0.424031 3_4:-65360630 None:intergenic
TTTGAGACTGAGAAGCATAA+TGG 0.425058 3_4:+65361815 Msa0514610:CDS
GTTACTTGCAGCTTTCTTTG+CGG 0.431372 3_4:-65365605 None:intergenic
ACTTTGAAGCATACCCAATT+CGG 0.436604 3_4:-65360786 None:intergenic
ATCTGCAGGTTAGATAGAAA+TGG 0.436689 3_4:+65365663 Msa0514610:exon
AGCTTATTCTCACGCGGTTG+AGG 0.441683 3_4:-65361497 None:intergenic
TGACCCTACTAAGCATCTTA+AGG 0.444211 3_4:+65361343 Msa0514610:CDS
TCTAATTCTTCTTTGAATGC+AGG 0.444424 3_4:+65361146 Msa0514610:CDS
GCCAACTTTGCATCCAGCTC+AGG 0.444703 3_4:-65361620 None:intergenic
TCCCATCATCTTTCCCGCGT+TGG 0.446029 3_4:+65365396 Msa0514610:CDS
ACTTGCTGATACAATCATAA+GGG 0.446448 3_4:+65362018 Msa0514610:CDS
TGGCGCATCGACCTTTCATC+AGG 0.446680 3_4:+65361759 Msa0514610:CDS
CTCCAACGCGGGAAAGATGA+TGG 0.449918 3_4:-65365398 None:intergenic
TTCAAATACTCTCTTTCTCT+AGG 0.456945 3_4:-65361704 None:intergenic
ATAAGAATTAAAATTACCAT+TGG 0.460065 3_4:-65361225 None:intergenic
ACCTGAGCTGGATGCAAAGT+TGG 0.460914 3_4:+65361619 Msa0514610:CDS
TCCAGAATTCCAGCGATGTA+TGG 0.464531 3_4:+65362129 Msa0514610:CDS
AAATAGCCTTCAATTCCTAT+AGG 0.465971 3_4:-65365800 None:intergenic
TACTAAGCATCTTAAGGAAA+AGG 0.466933 3_4:+65361349 Msa0514610:CDS
TCACTTCCTATAGGAATTGA+AGG 0.467315 3_4:+65365794 Msa0514610:three_prime_UTR
TCAAAGGAAGTTATGTTCCT+AGG 0.480411 3_4:+65362073 Msa0514610:CDS
AACTTGCTGATACAATCATA+AGG 0.482131 3_4:+65362017 Msa0514610:CDS
AGAATCATCATCTTCATATC+GGG 0.486218 3_4:+65360896 Msa0514610:five_prime_UTR
TGTGATGGGTTGGCCAAGAA+AGG 0.487462 3_4:+65365748 Msa0514610:three_prime_UTR
GCTCAAGCTACAAAAGCATA+AGG 0.488332 3_4:-65365885 None:intergenic
CAGAACAAACACAAAGAAGA+AGG 0.490537 3_4:-65360959 None:intergenic
ATTTGTTGCATCACCTGAGC+TGG 0.492210 3_4:+65361607 Msa0514610:CDS
ATGGTGAAAATTAGAGAAGT+GGG 0.492325 3_4:+65360825 Msa0514610:five_prime_UTR
TTGATTGATTTCCTGATGAA+AGG 0.494201 3_4:-65361770 None:intergenic
CGAAGCCACATGGAAACGCT+TGG 0.500307 3_4:+65365573 Msa0514610:CDS
CAGCAGGGCGCGAAGCCACA+TGG 0.503391 3_4:+65365563 Msa0514610:CDS
TGATACATTGCTAAGCACTT+TGG 0.506415 3_4:-65361947 None:intergenic
TTTCCTTAAGATGCTTAGTA+GGG 0.507948 3_4:-65361346 None:intergenic
GCACTACCTCGCAAATCTGC+AGG 0.509546 3_4:+65365649 Msa0514610:CDS
ATTTGAAAATGTCTTTGCAT+CGG 0.516512 3_4:+65361720 Msa0514610:CDS
AGTTATGTTCCTAGGTGAGT+TGG 0.516615 3_4:+65362081 Msa0514610:CDS
TCATAAACAATTTGCAAATG+AGG 0.517103 3_4:-65361572 None:intergenic
AGGTGAGTTGGAGGAAGTCT+TGG 0.518621 3_4:+65362093 Msa0514610:CDS
TATGGTGAAAATTAGAGAAG+TGG 0.520205 3_4:+65360824 Msa0514610:five_prime_UTR
GGCTATTTATTATTAAGTAG+TGG 0.520358 3_4:+65365815 Msa0514610:three_prime_UTR
AAGGAAGGTGAAGTGACAGC+AGG 0.527915 3_4:+65365547 Msa0514610:CDS
GAGATCAGAAACAGTGGTGG+TGG 0.531625 3_4:-65360727 None:intergenic
TATGTTCCTAGGTGAGTTGG+AGG 0.533910 3_4:+65362084 Msa0514610:CDS
AAGCACTTTGGTTTGTGCAA+CGG 0.534767 3_4:-65361935 None:intergenic
AGTGATGTTGTTACACAACC+TGG 0.535175 3_4:+65361101 Msa0514610:CDS
TTCGGAACATCCCTAAATGC+TGG 0.537273 3_4:-65361257 None:intergenic
TACTGAGAATGTAATGCAAG+AGG 0.549162 3_4:+65361433 Msa0514610:CDS
TGGCGTTGAATTAGAGGAGG+AGG 0.556878 3_4:+65361526 Msa0514610:CDS
GCCGATAACAAATAGTTCAA+AGG 0.558222 3_4:+65362057 Msa0514610:CDS
TTGAGATCAGAGTGAAAAGG+TGG 0.560569 3_4:-65360702 None:intergenic
CAAGGACAGTTTCATAGTCA+TGG 0.562679 3_4:+65361170 Msa0514610:CDS
CACATGGAAACGCTTGGAGG+AGG 0.564031 3_4:+65365579 Msa0514610:CDS
AGCCTTCGATGGATCCTTCG+TGG 0.564901 3_4:+65361549 Msa0514610:CDS
TTTGTATTTCTCTCCAACGC+GGG 0.566060 3_4:-65365409 None:intergenic
AAATTTAATACCTGAAAATG+GGG 0.567336 3_4:-65362190 None:intergenic
GTTTGAGCAAGACGAATCAA+AGG 0.576642 3_4:+65365528 Msa0514610:CDS
TCTTCTTTGAATGCAGGACA+AGG 0.584808 3_4:+65361152 Msa0514610:CDS
GGTTCTGAGAATCGTGAACA+AGG 0.586207 3_4:+65361038 Msa0514610:CDS
AATGCAAGAGGTTGTTAAGA+TGG 0.587807 3_4:+65361445 Msa0514610:CDS
AGAGGAGGAGGAGCCTTCGA+TGG 0.596230 3_4:+65361538 Msa0514610:CDS
ACAATAGCACCATACATCGC+TGG 0.596620 3_4:-65362138 None:intergenic
TCCAACGCGGGAAAGATGAT+GGG 0.597175 3_4:-65365397 None:intergenic
CTTGCTGATACAATCATAAG+GGG 0.598460 3_4:+65362019 Msa0514610:CDS
GGTGGAAATTCAAGAAGCCA+TGG 0.599824 3_4:+65361059 Msa0514610:CDS
CCTATGAATGAGAATTCCAA+TGG 0.604698 3_4:+65361209 Msa0514610:CDS
GTTTGATTAAGTTCACGATG+TGG 0.613263 3_4:-65365354 None:intergenic
ATCTAACCTGCAGATTTGCG+AGG 0.619938 3_4:-65365655 None:intergenic
AGCCACATGGAAACGCTTGG+AGG 0.620869 3_4:+65365576 Msa0514610:CDS
CTCCTCCAAGCGTTTCCATG+TGG 0.625054 3_4:-65365578 None:intergenic
GAATTGAGATCAGAGTGAAA+AGG 0.627439 3_4:-65360705 None:intergenic
AGACTTCCTCCAACTCACCT+AGG 0.632209 3_4:-65362090 None:intergenic
AGGAAGGTGAAGTGACAGCA+GGG 0.635472 3_4:+65365548 Msa0514610:CDS
GAGCAAGACGAATCAAAGGA+AGG 0.642249 3_4:+65365532 Msa0514610:CDS
TGATGGCGTTGAATTAGAGG+AGG 0.644796 3_4:+65361523 Msa0514610:CDS
ATTTGCAAATGAGGCCACGA+AGG 0.651420 3_4:-65361563 None:intergenic
GGCCACGAAGGATCCATCGA+AGG 0.651471 3_4:-65361551 None:intergenic
TTTGAGATCAGAAACAGTGG+TGG 0.652847 3_4:-65360730 None:intergenic
GTGATGTTGTTACACAACCT+GGG 0.665655 3_4:+65361102 Msa0514610:CDS
ATACATCGCTGGAATTCTGG+AGG 0.675794 3_4:-65362127 None:intergenic
TATTCAAACAATGAGAAACA+CGG 0.684922 3_4:-65362165 None:intergenic
AATTTAATACCTGAAAATGG+GGG 0.686933 3_4:-65362189 None:intergenic
TCTGAGAATCGTGAACAAGG+TGG 0.686992 3_4:+65361041 Msa0514610:CDS
TCAATGAGCTTATTCTCACG+CGG 0.708503 3_4:-65361503 None:intergenic
TTGCTGATACAATCATAAGG+GGG 0.715338 3_4:+65362020 Msa0514610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATTAAAATTACCAT+TGG - chr3_4:65361228-65361247 None:intergenic 15.0%
!! AAAATTTAATACCTGAAAAT+GGG - chr3_4:65362194-65362213 None:intergenic 15.0%
!!! AAATTATATAAAGCGTTTTA+TGG + chr3_4:65363993-65364012 Msa0514610:intron 15.0%
!! AGTTCAATTCAAAATCATTA+TGG + chr3_4:65360806-65360825 Msa0514610:five_prime_UTR 20.0%
!!! TGTTTTCTAGATTTGAAAAA+AGG + chr3_4:65360925-65360944 Msa0514610:five_prime_UTR 20.0%
!!! GTTTTCTAGATTTGAAAAAA+GGG + chr3_4:65360926-65360945 Msa0514610:five_prime_UTR 20.0%
!! AAATTTAATACCTGAAAATG+GGG - chr3_4:65362193-65362212 None:intergenic 20.0%
!! GAAAATTTAATACCTGAAAA+TGG - chr3_4:65362195-65362214 None:intergenic 20.0%
!! AAAAACATCATCTTAAAGTT+AGG + chr3_4:65362263-65362282 Msa0514610:intron 20.0%
!! CATATATGCATAACTAATTA+AGG + chr3_4:65362541-65362560 Msa0514610:intron 20.0%
!! TTAGCTAATTTAAAAGCTTA+TGG + chr3_4:65362807-65362826 Msa0514610:intron 20.0%
!! AAGAATAATCCAAAAGTTAA+AGG - chr3_4:65362923-65362942 None:intergenic 20.0%
!! ATATAAAAGTAACTTTGTAG+AGG - chr3_4:65364078-65364097 None:intergenic 20.0%
!!! TTTTGTCTAGTAATTGTAAT+AGG + chr3_4:65364464-65364483 Msa0514610:intron 20.0%
!!! GCTCTAAAAATTCAATAAAT+TGG - chr3_4:65364747-65364766 None:intergenic 20.0%
!! TTTACATTTAGAAGGTTTAA+GGG - chr3_4:65364867-65364886 None:intergenic 20.0%
!!! AATTATTGTTTGGCTTTTAT+TGG - chr3_4:65365205-65365224 None:intergenic 20.0%
!!! ATAGCTTCATTTTTTAAGAA+CGG + chr3_4:65365703-65365722 Msa0514610:three_prime_UTR 20.0%
!!! CGGATTTTATAGTATTTTTT+TGG + chr3_4:65365723-65365742 Msa0514610:three_prime_UTR 20.0%
!!! CTTAATCTTCTTTGTTGTTT+GGG - chr3_4:65360652-65360671 None:intergenic 25.0%
! TTGATGAACTATGTTCAAAA+AGG + chr3_4:65360983-65361002 Msa0514610:exon 25.0%
!!! ACTATGTTCAAAAAGGTATT+TGG + chr3_4:65360990-65361009 Msa0514610:exon 25.0%
!!! AGCTTTTTTATAAACAAGCT+CGG - chr3_4:65361293-65361312 None:intergenic 25.0%
! TCATAAACAATTTGCAAATG+AGG - chr3_4:65361575-65361594 None:intergenic 25.0%
!!! TTGATCAATCGTTTATTTTG+AGG + chr3_4:65361654-65361673 Msa0514610:CDS 25.0%
! ATTTGAAAATGTCTTTGCAT+CGG + chr3_4:65361720-65361739 Msa0514610:CDS 25.0%
! AATTTATGCTCTTCTTTCAA+TGG - chr3_4:65361893-65361912 None:intergenic 25.0%
!!! TCCTTTGAACTATTTGTTAT+CGG - chr3_4:65362061-65362080 None:intergenic 25.0%
! TATTCAAACAATGAGAAACA+CGG - chr3_4:65362168-65362187 None:intergenic 25.0%
! AATTTAATACCTGAAAATGG+GGG - chr3_4:65362192-65362211 None:intergenic 25.0%
!!! TTTTTTCAACGAAAAAAGAG+CGG - chr3_4:65362247-65362266 None:intergenic 25.0%
! CAATAAGTACAACAATCATA+TGG - chr3_4:65362313-65362332 None:intergenic 25.0%
!!! TGAAAAGTATATCCTTTTCT+TGG - chr3_4:65362355-65362374 None:intergenic 25.0%
! CATATGATTATGACATTCTA+TGG - chr3_4:65362512-65362531 None:intergenic 25.0%
! GTTATAAGACACATATTTAC+TGG - chr3_4:65362589-65362608 None:intergenic 25.0%
! ATTTAAAAGCTTATGGTCTT+AGG + chr3_4:65362814-65362833 Msa0514610:intron 25.0%
!! TTAGTTGATGTTGCATTATT+GGG - chr3_4:65362846-65362865 None:intergenic 25.0%
!! TTTAGTTGATGTTGCATTAT+TGG - chr3_4:65362847-65362866 None:intergenic 25.0%
!!! CTTCTTTTACCTTTAACTTT+TGG + chr3_4:65362911-65362930 Msa0514610:intron 25.0%
! AATTCAGATAATATTCACAG+TGG - chr3_4:65363032-65363051 None:intergenic 25.0%
! TTTATGGGGAAAAATAGAAT+CGG - chr3_4:65363076-65363095 None:intergenic 25.0%
! ATAAGAATGTTATGTTGGAT+AGG - chr3_4:65363103-65363122 None:intergenic 25.0%
! CAGAAATAAGAATGTTATGT+TGG - chr3_4:65363108-65363127 None:intergenic 25.0%
!!! AATTTTCCTTTAAGCTTTAG+AGG + chr3_4:65363212-65363231 Msa0514610:intron 25.0%
! AAGTAGAAAAGATGAAATGA+AGG - chr3_4:65363271-65363290 None:intergenic 25.0%
! ACCAAAACTATAGAAATTTG+TGG - chr3_4:65363437-65363456 None:intergenic 25.0%
! TTCCATGCATATGTTTAAAA+AGG - chr3_4:65363584-65363603 None:intergenic 25.0%
!!! GAACAAACTGTAACTTTTTT+CGG - chr3_4:65363659-65363678 None:intergenic 25.0%
! AAGATCTATTGTTATGTATG+AGG + chr3_4:65363784-65363803 Msa0514610:intron 25.0%
! AGATCTATTGTTATGTATGA+GGG + chr3_4:65363785-65363804 Msa0514610:intron 25.0%
! ATCAAAAATAACTGCTAACA+GGG - chr3_4:65363870-65363889 None:intergenic 25.0%
! AATCAAAAATAACTGCTAAC+AGG - chr3_4:65363871-65363890 None:intergenic 25.0%
! TTTCTATTGATATGTCAAAC+AGG + chr3_4:65364042-65364061 Msa0514610:intron 25.0%
! TCATTCTTGTCTATTATACA+CGG - chr3_4:65364326-65364345 None:intergenic 25.0%
! CAATTACTAGACAAAACTTA+TGG - chr3_4:65364460-65364479 None:intergenic 25.0%
! AACAATTATATGCGATATGT+TGG + chr3_4:65364540-65364559 Msa0514610:intron 25.0%
!! CTTCATAGTTTCAAGTAAAA+TGG - chr3_4:65364710-65364729 None:intergenic 25.0%
!! TTTTCTTTCATTACATGTCT+CGG + chr3_4:65364785-65364804 Msa0514610:intron 25.0%
! CTTTACATTTAGAAGGTTTA+AGG - chr3_4:65364868-65364887 None:intergenic 25.0%
! CTTTGTTCTTTACATTTAGA+AGG - chr3_4:65364875-65364894 None:intergenic 25.0%
!!! AAACACTTCTAGAATGAAAT+TGG - chr3_4:65364922-65364941 None:intergenic 25.0%
! ACTCTGCATAAATTATTGTT+TGG - chr3_4:65365215-65365234 None:intergenic 25.0%
! AGAGAAATACAAAAACTCAT+TGG + chr3_4:65365419-65365438 Msa0514610:CDS 25.0%
!! GAACATTTAAAGTCAAACTA+TGG - chr3_4:65365456-65365475 None:intergenic 25.0%
! GGCTATTTATTATTAAGTAG+TGG + chr3_4:65365815-65365834 Msa0514610:three_prime_UTR 25.0%
!! GCTTAATCTTCTTTGTTGTT+TGG - chr3_4:65360653-65360672 None:intergenic 30.0%
AAACTTTGATTCACCGAATT+GGG + chr3_4:65360773-65360792 Msa0514610:five_prime_UTR 30.0%
TATGGTGAAAATTAGAGAAG+TGG + chr3_4:65360824-65360843 Msa0514610:five_prime_UTR 30.0%
ATGGTGAAAATTAGAGAAGT+GGG + chr3_4:65360825-65360844 Msa0514610:five_prime_UTR 30.0%
! CCTTTTTCTTATCTAGGTAA+GGG - chr3_4:65360858-65360877 None:intergenic 30.0%
CCTTACCTAGATAAGAAAAA+GGG + chr3_4:65360856-65360875 Msa0514610:five_prime_UTR 30.0%
! ACAAACCCTTTTTCTTATCT+AGG - chr3_4:65360864-65360883 None:intergenic 30.0%
CAGAATCATCATCTTCATAT+CGG + chr3_4:65360895-65360914 Msa0514610:five_prime_UTR 30.0%
AGAATCATCATCTTCATATC+GGG + chr3_4:65360896-65360915 Msa0514610:five_prime_UTR 30.0%
ATTCCTAAAAAGTCCTCAAA+AGG + chr3_4:65361017-65361036 Msa0514610:CDS 30.0%
!!! AACAACATCACTGTTTTTTG+AGG - chr3_4:65361093-65361112 None:intergenic 30.0%
TCTAATTCTTCTTTGAATGC+AGG + chr3_4:65361146-65361165 Msa0514610:CDS 30.0%
! TATAAACAAGCTCGGTTTTT+CGG - chr3_4:65361285-65361304 None:intergenic 30.0%
TTTCCTTAAGATGCTTAGTA+GGG - chr3_4:65361349-65361368 None:intergenic 30.0%
! TTTTCCTTAAGATGCTTAGT+AGG - chr3_4:65361350-65361369 None:intergenic 30.0%
TACTAAGCATCTTAAGGAAA+AGG + chr3_4:65361349-65361368 Msa0514610:CDS 30.0%
TTCAAATACTCTCTTTCTCT+AGG - chr3_4:65361707-65361726 None:intergenic 30.0%
! TTGATTGATTTCCTGATGAA+AGG - chr3_4:65361773-65361792 None:intergenic 30.0%
! TAATGGAATTGCTGAGTTTT+TGG + chr3_4:65361832-65361851 Msa0514610:CDS 30.0%
! AGAAGAGCATAAATTGTTTC+TGG + chr3_4:65361898-65361917 Msa0514610:CDS 30.0%
TTATTGCATTACTCAGTTTG+TGG + chr3_4:65361982-65362001 Msa0514610:CDS 30.0%
!! AACTTGCTGATACAATCATA+AGG + chr3_4:65362017-65362036 Msa0514610:CDS 30.0%
! ACTTGCTGATACAATCATAA+GGG + chr3_4:65362018-65362037 Msa0514610:CDS 30.0%
AGTTGTAAGTATGTGTCTTA+AGG - chr3_4:65362413-65362432 None:intergenic 30.0%
TGGATTACAACAAATAACCA+GGG - chr3_4:65362492-65362511 None:intergenic 30.0%
! ATGGATTACAACAAATAACC+AGG - chr3_4:65362493-65362512 None:intergenic 30.0%
!! ATTTTTCAAACACCTTTTGC+AGG - chr3_4:65362692-65362711 None:intergenic 30.0%
TTAATCTTGATGCAAGCTTA+AGG + chr3_4:65362726-65362745 Msa0514610:intron 30.0%
! CTCTCTTGTGCTATTAATTT+CGG + chr3_4:65362775-65362794 Msa0514610:intron 30.0%
!! AAAGTACCTCTAAAGCTTAA+AGG - chr3_4:65363221-65363240 None:intergenic 30.0%
! TGGAAATTTTCAGCTGTAAT+TGG - chr3_4:65363335-65363354 None:intergenic 30.0%
TGTACTTTCACTTTCATCAA+TGG - chr3_4:65363358-65363377 None:intergenic 30.0%
! GCCACAAATTTCTATAGTTT+TGG + chr3_4:65363433-65363452 Msa0514610:intron 30.0%
! CACCTTTTTAAACATATGCA+TGG + chr3_4:65363579-65363598 Msa0514610:intron 30.0%
!!! ACTGTAACTTTTTTCGGATT+GGG - chr3_4:65363653-65363672 None:intergenic 30.0%
!!! AACTGTAACTTTTTTCGGAT+TGG - chr3_4:65363654-65363673 None:intergenic 30.0%
AGTGAGTTCAATATCTCATA+TGG + chr3_4:65363708-65363727 Msa0514610:intron 30.0%
! GGTGTCATAAATGTAGTAAT+TGG - chr3_4:65363849-65363868 None:intergenic 30.0%
TTCTTCAATGTGAAGTTACT+AGG - chr3_4:65363926-65363945 None:intergenic 30.0%
AGTATCATAAACTCTTCTCA+AGG - chr3_4:65363967-65363986 None:intergenic 30.0%
AAACCTTCCTAACTTATGAA+GGG - chr3_4:65364108-65364127 None:intergenic 30.0%
TAAACCTTCCTAACTTATGA+AGG - chr3_4:65364109-65364128 None:intergenic 30.0%
!! TAAAAGTGTTTGTAAGCTTG+TGG + chr3_4:65364140-65364159 Msa0514610:intron 30.0%
! CTTGAAGGTAATTTTTGTGT+TGG + chr3_4:65364163-65364182 Msa0514610:intron 30.0%
AGCTGTGACGATAAATAATT+AGG + chr3_4:65364350-65364369 Msa0514610:intron 30.0%
TGTGACGATAAATAATTAGG+TGG + chr3_4:65364353-65364372 Msa0514610:intron 30.0%
ATAAAGTATAGACGATTTGC+AGG - chr3_4:65364390-65364409 None:intergenic 30.0%
AAGACATACTATATTCTGTC+AGG + chr3_4:65364504-65364523 Msa0514610:intron 30.0%
GACGAATCTAAATTTGACAT+GGG - chr3_4:65364640-65364659 None:intergenic 30.0%
TGACGAATCTAAATTTGACA+TGG - chr3_4:65364641-65364660 None:intergenic 30.0%
AAGAAAAAATGACAGAACAC+TGG - chr3_4:65364772-65364791 None:intergenic 30.0%
! ATTTTTCTTCGTCTTTTGCA+TGG + chr3_4:65364984-65365003 Msa0514610:intron 30.0%
!! TTTGTTGCTTTCTTCATTGA+TGG + chr3_4:65365011-65365030 Msa0514610:intron 30.0%
!! TTGTTGCTTTCTTCATTGAT+GGG + chr3_4:65365012-65365031 Msa0514610:intron 30.0%
TCTACAGCAATTCAAGATTT+AGG - chr3_4:65365050-65365069 None:intergenic 30.0%
AAATCTTGAATTGCTGTAGA+AGG + chr3_4:65365050-65365069 Msa0514610:intron 30.0%
TGAGTAATAGAGATATCATG+CGG - chr3_4:65365110-65365129 None:intergenic 30.0%
GATTATATGCATCAAGTGAA+TGG + chr3_4:65365148-65365167 Msa0514610:intron 30.0%
!! TTTTGAGAAAGATCCAACTT+TGG + chr3_4:65365178-65365197 Msa0514610:intron 30.0%
TTTGAGAAAGATCCAACTTT+GGG + chr3_4:65365179-65365198 Msa0514610:intron 30.0%
! ACTGATATTGTCTTTGTTTC+AGG + chr3_4:65365297-65365316 Msa0514610:intron 30.0%
!!! AGTATTTTTTTGGCATGTGA+TGG + chr3_4:65365733-65365752 Msa0514610:three_prime_UTR 30.0%
!!! GTATTTTTTTGGCATGTGAT+GGG + chr3_4:65365734-65365753 Msa0514610:three_prime_UTR 30.0%
ATTCAAGAAATTGCCTTTCT+TGG - chr3_4:65365764-65365783 None:intergenic 30.0%
AAATAGCCTTCAATTCCTAT+AGG - chr3_4:65365803-65365822 None:intergenic 30.0%
ATAAGGAAAATGCACTAGTT+AGG - chr3_4:65365871-65365890 None:intergenic 30.0%
GAATTGAGATCAGAGTGAAA+AGG - chr3_4:65360708-65360727 None:intergenic 35.0%
!!! CTTTTTGAGATCAGAAACAG+TGG - chr3_4:65360736-65360755 None:intergenic 35.0%
CAAACTTTGATTCACCGAAT+TGG + chr3_4:65360772-65360791 Msa0514610:five_prime_UTR 35.0%
!! ACTTTGAAGCATACCCAATT+CGG - chr3_4:65360789-65360808 None:intergenic 35.0%
CCCTTACCTAGATAAGAAAA+AGG + chr3_4:65360855-65360874 Msa0514610:five_prime_UTR 35.0%
! CCCTTTTTCTTATCTAGGTA+AGG - chr3_4:65360859-65360878 None:intergenic 35.0%
CGATATGAAGATGATGATTC+TGG - chr3_4:65360897-65360916 None:intergenic 35.0%
CAGAACAAACACAAAGAAGA+AGG - chr3_4:65360962-65360981 None:intergenic 35.0%
!! GAACCTTTTGAGGACTTTTT+AGG - chr3_4:65361023-65361042 None:intergenic 35.0%
CCATTGGAATTCTCATTCAT+AGG - chr3_4:65361212-65361231 None:intergenic 35.0%
CCTATGAATGAGAATTCCAA+TGG + chr3_4:65361209-65361228 Msa0514610:CDS 35.0%
ATGAAGCTTTACCAGCATTT+AGG + chr3_4:65361246-65361265 Msa0514610:CDS 35.0%
TGAAGCTTTACCAGCATTTA+GGG + chr3_4:65361247-65361266 Msa0514610:CDS 35.0%
TACTGAGAATGTAATGCAAG+AGG + chr3_4:65361433-65361452 Msa0514610:CDS 35.0%
AATGCAAGAGGTTGTTAAGA+TGG + chr3_4:65361445-65361464 Msa0514610:CDS 35.0%
! TTTGAGACTGAGAAGCATAA+TGG + chr3_4:65361815-65361834 Msa0514610:CDS 35.0%
!! TGCTGAGTTTTTGGAAATTC+TGG + chr3_4:65361841-65361860 Msa0514610:CDS 35.0%
!! GCTGAGTTTTTGGAAATTCT+GGG + chr3_4:65361842-65361861 Msa0514610:CDS 35.0%
!! CTGAGTTTTTGGAAATTCTG+GGG + chr3_4:65361843-65361862 Msa0514610:CDS 35.0%
!! ATTCTGGGGAGTATCATTAA+TGG + chr3_4:65361857-65361876 Msa0514610:CDS 35.0%
TGATACATTGCTAAGCACTT+TGG - chr3_4:65361950-65361969 None:intergenic 35.0%
CTTGCTGATACAATCATAAG+GGG + chr3_4:65362019-65362038 Msa0514610:CDS 35.0%
TTGCTGATACAATCATAAGG+GGG + chr3_4:65362020-65362039 Msa0514610:CDS 35.0%
GCCGATAACAAATAGTTCAA+AGG + chr3_4:65362057-65362076 Msa0514610:CDS 35.0%
TCAAAGGAAGTTATGTTCCT+AGG + chr3_4:65362073-65362092 Msa0514610:CDS 35.0%
GGTAAAAGAAAATGAGCTTG+AGG - chr3_4:65362226-65362245 None:intergenic 35.0%
CAAAAATCGTTCCTGAACTA+CGG + chr3_4:65362441-65362460 Msa0514610:intron 35.0%
ACACATATTTACTGGAAACC+TGG - chr3_4:65362581-65362600 None:intergenic 35.0%
GTTTAGCAGCTTTCTATGAA+GGG - chr3_4:65362623-65362642 None:intergenic 35.0%
TGTTTAGCAGCTTTCTATGA+AGG - chr3_4:65362624-65362643 None:intergenic 35.0%
TAATAGCACAAGAGAGATGA+GGG - chr3_4:65362771-65362790 None:intergenic 35.0%
TTAATAGCACAAGAGAGATG+AGG - chr3_4:65362772-65362791 None:intergenic 35.0%
TATATGCCAACCATTAAGAG+TGG - chr3_4:65362879-65362898 None:intergenic 35.0%
!! GAGCTATAGAAGCATTGATA+AGG - chr3_4:65362961-65362980 None:intergenic 35.0%
TAGTAGAATCTTGTCCTATG+CGG - chr3_4:65363003-65363022 None:intergenic 35.0%
!!! TGTTGGATAGGTGGTTTTAT+GGG - chr3_4:65363091-65363110 None:intergenic 35.0%
!! ATGTTGGATAGGTGGTTTTA+TGG - chr3_4:65363092-65363111 None:intergenic 35.0%
AGAATGTTATGTTGGATAGG+TGG - chr3_4:65363100-65363119 None:intergenic 35.0%
ACATTTGTGATTCCCAACAA+TGG - chr3_4:65363308-65363327 None:intergenic 35.0%
ACTTTCACTTTCATCAATGG+TGG - chr3_4:65363355-65363374 None:intergenic 35.0%
AATTTGTGGCATCGTTTCAA+AGG - chr3_4:65363423-65363442 None:intergenic 35.0%
!!! TCTATAGTTTTGGTCCTAAG+AGG + chr3_4:65363443-65363462 Msa0514610:intron 35.0%
TCTATACACAGACTACATAG+AGG - chr3_4:65363472-65363491 None:intergenic 35.0%
ACCTTCTTTCTCTATCAAGA+AGG + chr3_4:65363758-65363777 Msa0514610:intron 35.0%
CTATTGTTATGTATGAGGGA+TGG + chr3_4:65363789-65363808 Msa0514610:intron 35.0%
TAACATACAACTCCCATTGT+AGG + chr3_4:65363897-65363916 Msa0514610:intron 35.0%
AACATACAACTCCCATTGTA+GGG + chr3_4:65363898-65363917 Msa0514610:intron 35.0%
! AATGACTATCTTTTCCCTAG+AGG + chr3_4:65364216-65364235 Msa0514610:intron 35.0%
CATAAGATCAACTTCCTCTA+GGG - chr3_4:65364233-65364252 None:intergenic 35.0%
ACATAAGATCAACTTCCTCT+AGG - chr3_4:65364234-65364253 None:intergenic 35.0%
GTTGATCTTATGTTCATCTG+AGG + chr3_4:65364241-65364260 Msa0514610:intron 35.0%
GTTGATGTCTTTATCTGAAG+AGG + chr3_4:65364425-65364444 Msa0514610:intron 35.0%
CAAAGATACACTATCACTAG+TGG - chr3_4:65364608-65364627 None:intergenic 35.0%
CTAAGCATGGCATACATAAA+AGG - chr3_4:65364834-65364853 None:intergenic 35.0%
AAAGAACAAAGCATGTGTCA+AGG + chr3_4:65364884-65364903 Msa0514610:intron 35.0%
AAGAACAAAGCATGTGTCAA+GGG + chr3_4:65364885-65364904 Msa0514610:intron 35.0%
AATTCAAGATTTAGGCGCAT+AGG - chr3_4:65365042-65365061 None:intergenic 35.0%
! GATATTGTCTTTGTTTCAGG+TGG + chr3_4:65365300-65365319 Msa0514610:intron 35.0%
GTTTGATTAAGTTCACGATG+TGG - chr3_4:65365357-65365376 None:intergenic 35.0%
! TTTTGTATTTCTCTCCAACG+CGG - chr3_4:65365413-65365432 None:intergenic 35.0%
ATCTGCAGGTTAGATAGAAA+TGG + chr3_4:65365663-65365682 Msa0514610:exon 35.0%
CTTTGACATTCACTTCCTAT+AGG + chr3_4:65365785-65365804 Msa0514610:three_prime_UTR 35.0%
TCACTTCCTATAGGAATTGA+AGG + chr3_4:65365794-65365813 Msa0514610:three_prime_UTR 35.0%
AAAATGCACTAGTTAGGCTT+TGG - chr3_4:65365865-65365884 None:intergenic 35.0%
! TGGGTTGAAAAGAGAGAGAA+AGG - chr3_4:65360633-65360652 None:intergenic 40.0%
TTGAGATCAGAGTGAAAAGG+TGG - chr3_4:65360705-65360724 None:intergenic 40.0%
! TTTGAGATCAGAAACAGTGG+TGG - chr3_4:65360733-65360752 None:intergenic 40.0%
! ACGATTCTCAGAACCTTTTG+AGG - chr3_4:65361033-65361052 None:intergenic 40.0%
!!! TTTTTGAGGTTGCAACACCA+TGG - chr3_4:65361079-65361098 None:intergenic 40.0%
AGTGATGTTGTTACACAACC+TGG + chr3_4:65361101-65361120 Msa0514610:CDS 40.0%
GTGATGTTGTTACACAACCT+GGG + chr3_4:65361102-65361121 Msa0514610:CDS 40.0%
TCTTCTTTGAATGCAGGACA+AGG + chr3_4:65361152-65361171 Msa0514610:CDS 40.0%
CAAGGACAGTTTCATAGTCA+TGG + chr3_4:65361170-65361189 Msa0514610:CDS 40.0%
!! AAGCTCGGTTTTTCGGAATT+CGG - chr3_4:65361278-65361297 None:intergenic 40.0%
TGACCCTACTAAGCATCTTA+AGG + chr3_4:65361343-65361362 Msa0514610:CDS 40.0%
GGAGATTAAGAGACAAGCTT+TGG + chr3_4:65361370-65361389 Msa0514610:CDS 40.0%
TCAATGAGCTTATTCTCACG+CGG - chr3_4:65361506-65361525 None:intergenic 40.0%
CGTGAGAATAAGCTCATTGA+TGG + chr3_4:65361506-65361525 Msa0514610:CDS 40.0%
!! CATTGATGGCGTTGAATTAG+AGG + chr3_4:65361520-65361539 Msa0514610:CDS 40.0%
!! CTCTCTTTCTCTAGGATCTT+CGG - chr3_4:65361699-65361718 None:intergenic 40.0%
ATGTCTTTGCATCGGATCTA+TGG + chr3_4:65361728-65361747 Msa0514610:CDS 40.0%
TCGGATCTATGGCAAGTTAA+TGG + chr3_4:65361739-65361758 Msa0514610:CDS 40.0%
!! AAGCACTTTGGTTTGTGCAA+CGG - chr3_4:65361938-65361957 None:intergenic 40.0%
TAAGGGGGTTATTGAAGTAC+TGG + chr3_4:65362035-65362054 Msa0514610:CDS 40.0%
AGTTATGTTCCTAGGTGAGT+TGG + chr3_4:65362081-65362100 Msa0514610:CDS 40.0%
! TTTGAATAGCCCCCATTTTC+AGG + chr3_4:65362180-65362199 Msa0514610:CDS 40.0%
AAATGAGCTTGAGGAAAGCA+TGG - chr3_4:65362217-65362236 None:intergenic 40.0%
GATTATATGCAACAAGTCCC+TGG + chr3_4:65362472-65362491 Msa0514610:intron 40.0%
AGAAAGCTGCTAAACATGCT+AGG + chr3_4:65362628-65362647 Msa0514610:intron 40.0%
ATCTTGATGCAAGCTTAAGG+TGG + chr3_4:65362729-65362748 Msa0514610:intron 40.0%
AATAGCACAAGAGAGATGAG+GGG - chr3_4:65362770-65362789 None:intergenic 40.0%
! AAGCTTATGGTCTTAGGAGA+TGG + chr3_4:65362820-65362839 Msa0514610:intron 40.0%
!! ACCTCTGAAACCACTCTTAA+TGG + chr3_4:65362866-65362885 Msa0514610:intron 40.0%
ACCATTAAGAGTGGTTTCAG+AGG - chr3_4:65362870-65362889 None:intergenic 40.0%
CTGAAACCACTCTTAATGGT+TGG + chr3_4:65362870-65362889 Msa0514610:intron 40.0%
GGTTGGCATATAGTTCTTCT+TGG + chr3_4:65362887-65362906 Msa0514610:intron 40.0%
!!! GTTGGATAGGTGGTTTTATG+GGG - chr3_4:65363090-65363109 None:intergenic 40.0%
GTTGTACGTGAGTGAATGTT+GGG - chr3_4:65363165-65363184 None:intergenic 40.0%
TGTTGTACGTGAGTGAATGT+TGG - chr3_4:65363166-65363185 None:intergenic 40.0%
! TCTTTTCTACTTGAACCCCA+TGG + chr3_4:65363279-65363298 Msa0514610:intron 40.0%
TTCCCAACAATGGAAACCAT+GGG - chr3_4:65363298-65363317 None:intergenic 40.0%
ATTCCCAACAATGGAAACCA+TGG - chr3_4:65363299-65363318 None:intergenic 40.0%
GTCTGTGTATAGACTTTCCT+TGG + chr3_4:65363479-65363498 Msa0514610:intron 40.0%
! CTTACTGTTTTGTGTCTGCT+TGG - chr3_4:65363690-65363709 None:intergenic 40.0%
CATATGGACTCATTTCAGCA+TGG + chr3_4:65363724-65363743 Msa0514610:intron 40.0%
GCCTTCTTGATAGAGAAAGA+AGG - chr3_4:65363762-65363781 None:intergenic 40.0%
GTTACTAGGATCCCTACAAT+GGG - chr3_4:65363912-65363931 None:intergenic 40.0%
AGTTACTAGGATCCCTACAA+TGG - chr3_4:65363913-65363932 None:intergenic 40.0%
AGTACGTCCCTTCATAAGTT+AGG + chr3_4:65364098-65364117 Msa0514610:intron 40.0%
TTTGTAAGCTTGTGGCTTGA+AGG + chr3_4:65364148-65364167 Msa0514610:intron 40.0%
!! TGCCGACTTTCTGTTCATTA+TGG + chr3_4:65364300-65364319 Msa0514610:intron 40.0%
GGCCATAATGAACAGAAAGT+CGG - chr3_4:65364305-65364324 None:intergenic 40.0%
GTCTTTATCTGAAGAGGAGA+AGG + chr3_4:65364431-65364450 Msa0514610:intron 40.0%
GGGATCGTAAAAACTAAGCA+TGG - chr3_4:65364847-65364866 None:intergenic 40.0%
!! TCTAGAAGTGTTTGCATGAC+TGG + chr3_4:65364929-65364948 Msa0514610:intron 40.0%
CTACTGCAATTTGCAAGACT+TGG + chr3_4:65365074-65365093 Msa0514610:intron 40.0%
! ATTGTCTTTGTTTCAGGTGG+CGG + chr3_4:65365303-65365322 Msa0514610:intron 40.0%
TTTGTATTTCTCTCCAACGC+GGG - chr3_4:65365412-65365431 None:intergenic 40.0%
GTTTGAGCAAGACGAATCAA+AGG + chr3_4:65365528-65365547 Msa0514610:CDS 40.0%
GTTACTTGCAGCTTTCTTTG+CGG - chr3_4:65365608-65365627 None:intergenic 40.0%
!!! TTTTTTGGCATGTGATGGGT+TGG + chr3_4:65365738-65365757 Msa0514610:three_prime_UTR 40.0%
! GCTCAAGCTACAAAAGCATA+AGG - chr3_4:65365888-65365907 None:intergenic 40.0%
!! GGTTCTGAGAATCGTGAACA+AGG + chr3_4:65361038-65361057 Msa0514610:CDS 45.0%
TCTGAGAATCGTGAACAAGG+TGG + chr3_4:65361041-65361060 Msa0514610:CDS 45.0%
GGTGGAAATTCAAGAAGCCA+TGG + chr3_4:65361059-65361078 Msa0514610:CDS 45.0%
! TTACCAGTTTTGCTACTCCC+AGG - chr3_4:65361122-65361141 None:intergenic 45.0%
TTCGGAACATCCCTAAATGC+TGG - chr3_4:65361260-65361279 None:intergenic 45.0%
! TGATGGCGTTGAATTAGAGG+AGG + chr3_4:65361523-65361542 Msa0514610:CDS 45.0%
ATTTGCAAATGAGGCCACGA+AGG - chr3_4:65361566-65361585 None:intergenic 45.0%
! ATTTGTTGCATCACCTGAGC+TGG + chr3_4:65361607-65361626 Msa0514610:CDS 45.0%
! TATGTTCCTAGGTGAGTTGG+AGG + chr3_4:65362084-65362103 Msa0514610:CDS 45.0%
ATACATCGCTGGAATTCTGG+AGG - chr3_4:65362130-65362149 None:intergenic 45.0%
TCCAGAATTCCAGCGATGTA+TGG + chr3_4:65362129-65362148 Msa0514610:CDS 45.0%
ACCATACATCGCTGGAATTC+TGG - chr3_4:65362133-65362152 None:intergenic 45.0%
ACAATAGCACCATACATCGC+TGG - chr3_4:65362141-65362160 None:intergenic 45.0%
GCAGTGTTCTTGCCAAGAAA+AGG + chr3_4:65362340-65362359 Msa0514610:intron 45.0%
! AAGGAGTACAGTCAGATTCC+AGG + chr3_4:65362560-65362579 Msa0514610:intron 45.0%
! TCAAACACCTTTTGCAGGCA+GGG - chr3_4:65362687-65362706 None:intergenic 45.0%
! TTCAAACACCTTTTGCAGGC+AGG - chr3_4:65362688-65362707 None:intergenic 45.0%
ATGCAAGCTTAAGGTGGTGA+GGG + chr3_4:65362735-65362754 Msa0514610:intron 45.0%
ATAGCACAAGAGAGATGAGG+GGG - chr3_4:65362769-65362788 None:intergenic 45.0%
AATCTTGTCCTATGCGGTCT+GGG - chr3_4:65362997-65363016 None:intergenic 45.0%
AACCCCATGGTTTCCATTGT+TGG + chr3_4:65363292-65363311 Msa0514610:intron 45.0%
ACCCCATGGTTTCCATTGTT+GGG + chr3_4:65363293-65363312 Msa0514610:intron 45.0%
TCCCAACAATGGAAACCATG+GGG - chr3_4:65363297-65363316 None:intergenic 45.0%
CTACATAGAGGCTTCCTCTT+AGG - chr3_4:65363460-65363479 None:intergenic 45.0%
ACCCTACTGCTTTCTGACTT+AGG + chr3_4:65363603-65363622 Msa0514610:intron 45.0%
CCCTAAGTCAGAAAGCAGTA+GGG - chr3_4:65363607-65363626 None:intergenic 45.0%
CCCTACTGCTTTCTGACTTA+GGG + chr3_4:65363604-65363623 Msa0514610:intron 45.0%
ACCCTAAGTCAGAAAGCAGT+AGG - chr3_4:65363608-65363627 None:intergenic 45.0%
TTGTGTCTGCTTGGTCATCA+AGG - chr3_4:65363681-65363700 None:intergenic 45.0%
ACATGCAAAAAGTCGTGCAG+AGG - chr3_4:65363826-65363845 None:intergenic 45.0%
CGTCCCTTCATAAGTTAGGA+AGG + chr3_4:65364102-65364121 Msa0514610:intron 45.0%
CAAAGCATGTGTCAAGGGAT+TGG + chr3_4:65364890-65364909 Msa0514610:intron 45.0%
! GGCTTTTATTGGCCCAAAGT+TGG - chr3_4:65365194-65365213 None:intergenic 45.0%
!! CGGAAAGAGCTTTGTTCTTG+TGG + chr3_4:65365323-65365342 Msa0514610:CDS 45.0%
GAGCAAGACGAATCAAAGGA+AGG + chr3_4:65365532-65365551 Msa0514610:CDS 45.0%
ATCTAACCTGCAGATTTGCG+AGG - chr3_4:65365658-65365677 None:intergenic 45.0%
GAGATCAGAAACAGTGGTGG+TGG - chr3_4:65360730-65360749 None:intergenic 50.0%
CAACCTGGGAGTAGCAAAAC+TGG + chr3_4:65361116-65361135 Msa0514610:CDS 50.0%
AGCTTATTCTCACGCGGTTG+AGG - chr3_4:65361500-65361519 None:intergenic 50.0%
! TGGCGTTGAATTAGAGGAGG+AGG + chr3_4:65361526-65361545 Msa0514610:CDS 50.0%
ACCTGAGCTGGATGCAAAGT+TGG + chr3_4:65361619-65361638 Msa0514610:CDS 50.0%
AGACTTCCTCCAACTCACCT+AGG - chr3_4:65362093-65362112 None:intergenic 50.0%
! AGGTGAGTTGGAGGAAGTCT+TGG + chr3_4:65362093-65362112 Msa0514610:CDS 50.0%
ATCGAGCAAGTCCGTAGTTC+AGG - chr3_4:65362455-65362474 None:intergenic 50.0%
! CAGGCAGGGTTTGGAGTAAA+AGG - chr3_4:65362673-65362692 None:intergenic 50.0%
GATGCAAGCTTAAGGTGGTG+AGG + chr3_4:65362734-65362753 Msa0514610:intron 50.0%
GAATCTTGTCCTATGCGGTC+TGG - chr3_4:65362998-65363017 None:intergenic 50.0%
AACACAGCGAAACTGCTCCA+AGG - chr3_4:65363499-65363518 None:intergenic 50.0%
TTTCCTGACCTGGAGTGTGT+CGG - chr3_4:65363527-65363546 None:intergenic 50.0%
TCCAGGTCAGGAAACAGTCA+GGG + chr3_4:65363533-65363552 Msa0514610:intron 50.0%
TCCAGTTCCTTCGTGACCAA+TGG + chr3_4:65365242-65365261 Msa0514610:intron 50.0%
TCCATTGGTCACGAAGGAAC+TGG - chr3_4:65365246-65365265 None:intergenic 50.0%
CATTGCAACTGCAGCTCCAT+TGG - chr3_4:65365261-65365280 None:intergenic 50.0%
TCCAACGCGGGAAAGATGAT+GGG - chr3_4:65365400-65365419 None:intergenic 50.0%
AAGGAAGGTGAAGTGACAGC+AGG + chr3_4:65365547-65365566 Msa0514610:CDS 50.0%
AGGAAGGTGAAGTGACAGCA+GGG + chr3_4:65365548-65365567 Msa0514610:CDS 50.0%
!! TGTGATGGGTTGGCCAAGAA+AGG + chr3_4:65365748-65365767 Msa0514610:three_prime_UTR 50.0%
AGCCTTCGATGGATCCTTCG+TGG + chr3_4:65361549-65361568 Msa0514610:CDS 55.0%
GCCAACTTTGCATCCAGCTC+AGG - chr3_4:65361623-65361642 None:intergenic 55.0%
! TGGCGCATCGACCTTTCATC+AGG + chr3_4:65361759-65361778 Msa0514610:CDS 55.0%
CTCCAAACCCTGCCTGCAAA+AGG + chr3_4:65362677-65362696 Msa0514610:intron 55.0%
! CACCTTTTGCAGGCAGGGTT+TGG - chr3_4:65362682-65362701 None:intergenic 55.0%
AGCTTAAGGTGGTGAGGGTG+AGG + chr3_4:65362740-65362759 Msa0514610:intron 55.0%
GCTTAAGGTGGTGAGGGTGA+GGG + chr3_4:65362741-65362760 Msa0514610:intron 55.0%
CATTTGTGCCCAGACCGCAT+AGG + chr3_4:65362986-65363005 Msa0514610:intron 55.0%
CTCCAGGTCAGGAAACAGTC+AGG + chr3_4:65363532-65363551 Msa0514610:intron 55.0%
TGCAGCTCCATTGGTCACGA+AGG - chr3_4:65365252-65365271 None:intergenic 55.0%
TCCCATCATCTTTCCCGCGT+TGG + chr3_4:65365396-65365415 Msa0514610:CDS 55.0%
CTCCAACGCGGGAAAGATGA+TGG - chr3_4:65365401-65365420 None:intergenic 55.0%
CGAAGCCACATGGAAACGCT+TGG + chr3_4:65365573-65365592 Msa0514610:CDS 55.0%
AGCCACATGGAAACGCTTGG+AGG + chr3_4:65365576-65365595 Msa0514610:CDS 55.0%
CTCCTCCAAGCGTTTCCATG+TGG - chr3_4:65365581-65365600 None:intergenic 55.0%
CACATGGAAACGCTTGGAGG+AGG + chr3_4:65365579-65365598 Msa0514610:CDS 55.0%
GCACTACCTCGCAAATCTGC+AGG + chr3_4:65365649-65365668 Msa0514610:CDS 55.0%
AGAGGAGGAGGAGCCTTCGA+TGG + chr3_4:65361538-65361557 Msa0514610:CDS 60.0%
GGCCACGAAGGATCCATCGA+AGG - chr3_4:65361554-65361573 None:intergenic 60.0%
GTTAGCTGCCGACACACTCC+AGG + chr3_4:65363516-65363535 Msa0514610:intron 60.0%
GCCCTGACTGTTTCCTGACC+TGG - chr3_4:65363537-65363556 None:intergenic 60.0%
CTGCCGACACACTCCAGGTC+AGG + chr3_4:65363521-65363540 Msa0514610:intron 65.0%
CAGCAGGGCGCGAAGCCACA+TGG + chr3_4:65365563-65365582 Msa0514610:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65360599 65365943 65360599 ID=Msa0514610;Name=Msa0514610
chr3_4 mRNA 65360599 65365943 65360599 ID=Msa0514610-mRNA-1;Parent=Msa0514610;Name=Msa0514610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=394|1|1|1|1|1|2|268|521
chr3_4 exon 65360599 65362201 65360599 ID=Msa0514610-mRNA-1:exon:16635;Parent=Msa0514610-mRNA-1
chr3_4 exon 65365319 65365943 65365319 ID=Msa0514610-mRNA-1:exon:16636;Parent=Msa0514610-mRNA-1
chr3_4 five_prime_UTR 65360599 65360992 65360599 ID=Msa0514610-mRNA-1:five_prime_utr;Parent=Msa0514610-mRNA-1
chr3_4 CDS 65360993 65362201 65360993 ID=Msa0514610-mRNA-1:cds;Parent=Msa0514610-mRNA-1
chr3_4 CDS 65365319 65365675 65365319 ID=Msa0514610-mRNA-1:cds;Parent=Msa0514610-mRNA-1
chr3_4 three_prime_UTR 65365676 65365943 65365676 ID=Msa0514610-mRNA-1:three_prime_utr;Parent=Msa0514610-mRNA-1
Gene Sequence

>Msa0514610

ATGTTCAAAAAGGTATTTGGTAAAATTCCTAAAAAGTCCTCAAAAGGTTCTGAGAATCGTGAACAAGGTGGAAATTCAAGAAGCCATGGTGTTGCAACCTCAAAAAACAGTGATGTTGTTACACAACCTGGGAGTAGCAAAACTGGTAATTCTTCTAATTCTTCTTTGAATGCAGGACAAGGACAGTTTCATAGTCATGGTAACAAATCTTCATTACCTATGAATGAGAATTCCAATGGTAATTTTAATTCTTATGAAGCTTTACCAGCATTTAGGGATGTTCCGAATTCCGAAAAACCGAGCTTGTTTATAAAAAAGCTTAAGATGTGTAGTGTTGTTTTTGACTTCACTGACCCTACTAAGCATCTTAAGGAAAAGGAGATTAAGAGACAAGCTTTGGTTGAGCTTGTTGATTATGTGTCTTCTGTTAATGCTAAATTTACTGAGAATGTAATGCAAGAGGTTGTTAAGATGGTGTCTGTAAATATATTCAGAACACTAAGTCCTCAACCGCGTGAGAATAAGCTCATTGATGGCGTTGAATTAGAGGAGGAGGAGCCTTCGATGGATCCTTCGTGGCCTCATTTGCAAATTGTTTATGAGCTTTTTCTTAGATTTGTTGCATCACCTGAGCTGGATGCAAAGTTGGCTAAGAGATTCATTGATCAATCGTTTATTTTGAGGCTGCTTGATTTGTTTGACTCCGAAGATCCTAGAGAAAGAGAGTATTTGAAAATGTCTTTGCATCGGATCTATGGCAAGTTAATGGCGCATCGACCTTTCATCAGGAAATCAATCAATAACATCTTTTTGAACTTTGTTTTTGAGACTGAGAAGCATAATGGAATTGCTGAGTTTTTGGAAATTCTGGGGAGTATCATTAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTGGTTCGAATATTGATTCCGTTGCACAAACCAAAGTGCTTAGCAATGTATCATCAGCAGTTATCTTATTGCATTACTCAGTTTGTGGAGAAAGACTGCAAACTTGCTGATACAATCATAAGGGGGTTATTGAAGTACTGGCCGATAACAAATAGTTCAAAGGAAGTTATGTTCCTAGGTGAGTTGGAGGAAGTCTTGGAAGCAACTCAACCTCCAGAATTCCAGCGATGTATGGTGCTATTGTTTCGCCGTGTTTCTCATTGTTTGAATAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCTTGTGGAATAACGACCACATCGTGAACTTAATCAAACAAAACTGCAAAGTGATACTTCCCATCATCTTTCCCGCGTTGGAGAGAAATACAAAAACTCATTGGAATCAAGCTGTCCATAGTTTGACTTTAAATGTTCAGAAGATTTTTCACGATCTCGATCTCGATCTGTACAAAGAATGTTTACAAAAGTTTGAGCAAGACGAATCAAAGGAAGGTGAAGTGACAGCAGGGCGCGAAGCCACATGGAAACGCTTGGAGGAGGTTGCCGCAAAGAAAGCTGCAAGTAACGAAGCTGTGCTTATTAGTAAAGCACTACCTCGCAAATCTGCAGGTTAG

Protein sequence

>Msa0514610

MFKKVFGKIPKKSSKGSENREQGGNSRSHGVATSKNSDVVTQPGSSKTGNSSNSSLNAGQGQFHSHGNKSSLPMNENSNGNFNSYEALPAFRDVPNSEKPSLFIKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSVNAKFTENVMQEVVKMVSVNIFRTLSPQPRENKLIDGVELEEEEPSMDPSWPHLQIVYELFLRFVASPELDAKLAKRFIDQSFILRLLDLFDSEDPREREYLKMSLHRIYGKLMAHRPFIRKSINNIFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVLLFRRVSHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTKTHWNQAVHSLTLNVQKIFHDLDLDLYKECLQKFEQDESKEGEVTAGREATWKRLEEVAAKKAASNEAVLISKALPRKSAG*