AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371240 MtrunA17_Chr8g0386041 100.000 118 0 0 1 118 1 118 8.12e-84 240
Msa1371240 MtrunA17_Chr7g0224251 64.407 118 42 0 1 118 1 118 3.02e-57 173
Msa1371240 MtrunA17_Chr7g0224241 62.037 108 41 0 1 108 1 108 2.70e-48 157
Msa1371240 MtrunA17_Chr7g0268701 47.009 117 59 3 4 118 5 120 1.22e-34 115
Msa1371240 MtrunA17_Chr6g0454091 48.718 117 56 2 3 118 4 117 1.50e-33 113
Msa1371240 MtrunA17_Chr7g0218501 45.299 117 60 2 4 118 5 119 2.61e-31 107
Msa1371240 MtrunA17_Chr8g0386061 72.917 48 13 0 1 48 1 48 1.17e-20 79.0
Msa1371240 MtrunA17_Chr8g0386071 73.770 61 14 1 44 102 14 74 3.07e-20 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371240 AT4G24990.2 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa1371240 AT4G24990.1 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa1371240 AT3G26980.1 63.333 120 42 1 1 118 1 120 1.75e-53 164
Msa1371240 AT1G77870.1 49.167 120 59 1 1 118 1 120 7.55e-36 119
Msa1371240 AT1G22050.1 46.154 117 61 2 3 118 4 119 4.55e-35 117
Msa1371240 AT5G15460.2 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa1371240 AT5G15460.1 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa1371240 AT5G15460.4 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa1371240 AT3G01050.2 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa1371240 AT3G01050.3 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa1371240 AT3G01050.1 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa1371240 AT3G01050.4 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa1371240 AT3G01050.5 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa1371240 AT5G15460.3 47.143 70 34 1 49 115 24 93 1.81e-14 64.3

Find 44 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAAAAGTTTGGGTTAA+TGG 0.165799 tig0019188:-99040 Msa1371240:three_prime_UTR
TATATATTTATAGAAAAGTT+TGG 0.233718 tig0019188:-99048 Msa1371240:three_prime_UTR
GATTAGTTCTGGTAAAATAT+TGG 0.241614 tig0019188:-100378 Msa1371240:CDS
TTATACGATGGTTCTGATAT+TGG 0.261582 tig0019188:-103415 Msa1371240:CDS
GAAGTGAAATTGATTAGTTC+TGG 0.322349 tig0019188:-100389 Msa1371240:CDS
ACAAGAACAGACAACCTTCT+TGG 0.322618 tig0019188:+99201 None:intergenic
TGAAATGCCGGAAGAAGATT+TGG 0.328122 tig0019188:-103455 Msa1371240:exon
ATAAGATTAGGGTTTAAGTA+AGG 0.350178 tig0019188:-103515 Msa1371240:five_prime_UTR
CTTCATTTGCTGACTTTGGC+AGG 0.363564 tig0019188:+100408 None:intergenic
GCCATCTCTAGCAAAATCTA+AGG 0.369339 tig0019188:-100273 Msa1371240:CDS
GGGATCGAATATTACCTTAC+TGG 0.371716 tig0019188:+103644 None:intergenic
TTCACTTCATTTGCTGACTT+TGG 0.374456 tig0019188:+100404 None:intergenic
GCACCATTTGGTGATATTGC+AGG 0.375129 tig0019188:-100326 Msa1371240:CDS
ATATCAACCAAATCTTCTTC+CGG 0.380506 tig0019188:+103448 None:intergenic
ATTGTCTCTGATTGGCCTAA+AGG 0.386290 tig0019188:-103343 Msa1371240:intron
ATCAAAAGAAAGATAAGATT+AGG 0.389904 tig0019188:-103527 Msa1371240:five_prime_UTR
AGTCAAAACAATCTTTGAAA+TGG 0.392525 tig0019188:-103701 Msa1371240:five_prime_UTR
TCAAAAGAAAGATAAGATTA+GGG 0.393619 tig0019188:-103526 Msa1371240:five_prime_UTR
GTTCTGATATTGGACCCTTT+AGG 0.396203 tig0019188:-103405 Msa1371240:CDS
ATTTGGTTGATATCAAGTTT+AGG 0.398560 tig0019188:-103438 Msa1371240:CDS
ATATATTTATAGAAAAGTTT+GGG 0.404295 tig0019188:-99047 Msa1371240:three_prime_UTR
AGCAAAGAATTGTCTCTGAT+TGG 0.406651 tig0019188:-103351 Msa1371240:CDS
TAAGATTAGGGTTTAAGTAA+GGG 0.465267 tig0019188:-103514 Msa1371240:five_prime_UTR
ACAGGGATGCTGAAAATAGA+AGG 0.467632 tig0019188:+99093 None:intergenic
AGTGAAAACGCCATGCATAA+TGG 0.483681 tig0019188:+98939 None:intergenic
CACCATTTGGTGATATTGCA+GGG 0.488227 tig0019188:-100325 Msa1371240:CDS
GGATCGAATATTACCTTACT+GGG 0.493683 tig0019188:+103645 None:intergenic
ATCAAAGTGAATTGAAATGC+CGG 0.499497 tig0019188:-103467 Msa1371240:exon
AAATCAAATCAAACCCAGTA+AGG 0.505665 tig0019188:-103658 Msa1371240:intron
TGCATAATGGTAGCAATCAA+TGG 0.508344 tig0019188:+98952 None:intergenic
AGCAGCAGATGAATACCTAA+AGG 0.527922 tig0019188:+103390 None:intergenic
GGTCAGTGTAAAGCACCATT+TGG 0.539107 tig0019188:-100338 Msa1371240:CDS
GCAGCAGATGAATACCTAAA+GGG 0.552811 tig0019188:+103391 None:intergenic
TCTCTAGCAAAATCTAAGGC+TGG 0.561259 tig0019188:-100269 Msa1371240:intron
GGTTGACGATTCATCCAAGA+AGG 0.562796 tig0019188:-99215 Msa1371240:CDS
TGTGAAGACAGTTTGTGAGT+TGG 0.568556 tig0019188:-99171 Msa1371240:exon
TTGGAAAACAACAAGACTGT+TGG 0.569386 tig0019188:-100359 Msa1371240:CDS
AAGGATTTCGATCAAGCAGA+TGG 0.570386 tig0019188:+99112 None:intergenic
ATTTGGTGATATTGCAGGGG+GGG 0.579797 tig0019188:-100321 Msa1371240:CDS
TTGATTGCTACCATTATGCA+TGG 0.587552 tig0019188:-98949 Msa1371240:three_prime_UTR
ATCAAGTTTAGGTTATACGA+TGG 0.616001 tig0019188:-103427 Msa1371240:CDS
CCATTTGGTGATATTGCAGG+GGG 0.624175 tig0019188:-100323 Msa1371240:CDS
ACCATTTGGTGATATTGCAG+GGG 0.637359 tig0019188:-100324 Msa1371240:CDS
CATTTGGTGATATTGCAGGG+GGG 0.680642 tig0019188:-100322 Msa1371240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAGTAATATAATTAAAA+GGG + tig0019188:99096-99115 None:intergenic 10.0%
!! TGAATAGTAATATAATTAAA+AGG + tig0019188:99097-99116 None:intergenic 10.0%
!!! TTTATTTACTGTTTTTATTT+TGG - tig0019188:99439-99458 Msa1371240:intron 10.0%
!!! TTTTTTTAAAATATTTTTGG+AGG + tig0019188:99877-99896 None:intergenic 10.0%
!! TGAATAGAATAAAATATTAT+GGG - tig0019188:100876-100895 Msa1371240:intron 10.0%
!!! TACTTTTCATTTTTAAATTA+CGG + tig0019188:102903-102922 None:intergenic 10.0%
!! TATATATTTATAGAAAAGTT+TGG - tig0019188:103669-103688 Msa1371240:five_prime_UTR 10.0%
!! ATATATTTATAGAAAAGTTT+GGG - tig0019188:103670-103689 Msa1371240:five_prime_UTR 10.0%
!! AAGAAAATAAAAACATTGAA+AGG - tig0019188:98972-98991 Msa1371240:three_prime_UTR 15.0%
!!! CATTTTTGATTGAAAATTTT+AGG - tig0019188:99166-99185 Msa1371240:three_prime_UTR 15.0%
!! AAAATTGAATTGAAAAAGAA+AGG + tig0019188:99413-99432 None:intergenic 15.0%
!! TTTCATATTTATATATGAAG+TGG - tig0019188:99676-99695 Msa1371240:intron 15.0%
!!! TTTTTATTAGAAGATAATCA+AGG - tig0019188:99755-99774 Msa1371240:intron 15.0%
!! CTGAATAGAATAAAATATTA+TGG - tig0019188:100875-100894 Msa1371240:intron 15.0%
!!! GTTATTTTTATCTTAATTTC+CGG - tig0019188:101860-101879 Msa1371240:intron 15.0%
!!! AAACATATTTTTCATGATTT+AGG + tig0019188:101912-101931 None:intergenic 15.0%
!! TTATATTGAGTGATATATTA+TGG - tig0019188:102093-102112 Msa1371240:intron 15.0%
!!! TCATTTTCTCAAAATATTAT+TGG + tig0019188:103035-103054 None:intergenic 15.0%
!! ATCAAAAGAAAGATAAGATT+AGG - tig0019188:99190-99209 Msa1371240:CDS 20.0%
!! TCAAAAGAAAGATAAGATTA+GGG - tig0019188:99191-99210 Msa1371240:CDS 20.0%
!!! TTACTGTTTTTATTTTGGTT+AGG - tig0019188:99444-99463 Msa1371240:intron 20.0%
!!! AGTTTGACTTTAAATTTCAT+CGG - tig0019188:99575-99594 Msa1371240:intron 20.0%
!!! TTGATTTTAGATCTTTATTG+AGG + tig0019188:99953-99972 None:intergenic 20.0%
!! AATCAATTTAATCTTTGTTG+AGG + tig0019188:100002-100021 None:intergenic 20.0%
!! TGAGTAAAAGAAAATTATGA+TGG + tig0019188:100674-100693 None:intergenic 20.0%
!!! TATTTTATTCTATTCAGAGA+AGG + tig0019188:100872-100891 None:intergenic 20.0%
!!! AAGATTTTTGTAACTCAATA+AGG - tig0019188:101359-101378 Msa1371240:intron 20.0%
!!! AGATTTTTGTAACTCAATAA+GGG - tig0019188:101360-101379 Msa1371240:intron 20.0%
!! GATTGTGATATAATTACTAA+AGG - tig0019188:101384-101403 Msa1371240:intron 20.0%
!! ATGTTAAAATTACACAGAAA+AGG - tig0019188:101581-101600 Msa1371240:intron 20.0%
!! ACTTATATTCCATGTATTAT+TGG + tig0019188:101842-101861 None:intergenic 20.0%
!! AAAAATATGTTTAACATGCT+CGG - tig0019188:101920-101939 Msa1371240:intron 20.0%
!! TGATTATTGTTAATTCTAAC+AGG - tig0019188:102125-102144 Msa1371240:intron 20.0%
!!! AGAAAAAAGAATTTTCTACA+GGG + tig0019188:102627-102646 None:intergenic 20.0%
!!! TAGAAAAAAGAATTTTCTAC+AGG + tig0019188:102628-102647 None:intergenic 20.0%
!!! ATTAGAATTGGTTTTTATCT+TGG + tig0019188:103235-103254 None:intergenic 20.0%
!! TTCAAATCAAAAGATATTGT+AGG + tig0019188:103425-103444 None:intergenic 20.0%
!!! TACAATATCTTTTGATTTGA+AGG - tig0019188:103424-103443 Msa1371240:CDS 20.0%
!!! CTTTCCTTTTTTTTCTTCTT+CGG + tig0019188:98955-98974 None:intergenic 25.0%
!! AGTCAAAACAATCTTTGAAA+TGG - tig0019188:99016-99035 Msa1371240:three_prime_UTR 25.0%
! ATAAGATTAGGGTTTAAGTA+AGG - tig0019188:99202-99221 Msa1371240:CDS 25.0%
! TAAGATTAGGGTTTAAGTAA+GGG - tig0019188:99203-99222 Msa1371240:CDS 25.0%
!! ATTTGGTTGATATCAAGTTT+AGG - tig0019188:99279-99298 Msa1371240:intron 25.0%
! GGAAAAAAAAACAAACCTTT+AGG + tig0019188:99392-99411 None:intergenic 25.0%
!! TTAGGTTTGATTGTTGATTA+GGG - tig0019188:99462-99481 Msa1371240:intron 25.0%
!!! GTGTCACTTTTTTTTAGTTT+TGG - tig0019188:99484-99503 Msa1371240:intron 25.0%
! TTAGAAGATAATCAAGGATT+TGG - tig0019188:99761-99780 Msa1371240:intron 25.0%
!!! TTTCTGTGTTGTTTTTATTG+AGG - tig0019188:100459-100478 Msa1371240:intron 25.0%
! TTGTAACAGCAGAAAATATA+CGG + tig0019188:100486-100505 None:intergenic 25.0%
! TAAGGAAAATAGATTGACAT+TGG + tig0019188:100913-100932 None:intergenic 25.0%
! AAAGCTGTTAATATCAGTAT+TGG + tig0019188:100973-100992 None:intergenic 25.0%
! AATTACTAAAGGAGAAAACT+AGG - tig0019188:101395-101414 Msa1371240:intron 25.0%
! TTAAAATTACACAGAAAAGG+TGG - tig0019188:101584-101603 Msa1371240:intron 25.0%
! ATACAAAAACTAAGATGTGT+AGG - tig0019188:101686-101705 Msa1371240:intron 25.0%
! AGTAGGGTTCTTATTATAAT+AGG + tig0019188:101788-101807 None:intergenic 25.0%
! GATGTATCGTTAAAATAGTA+GGG + tig0019188:101804-101823 None:intergenic 25.0%
! AGATGTATCGTTAAAATAGT+AGG + tig0019188:101805-101824 None:intergenic 25.0%
! TATTCCATGTATTATTGGAA+GGG + tig0019188:101837-101856 None:intergenic 25.0%
! ATATTCCATGTATTATTGGA+AGG + tig0019188:101838-101857 None:intergenic 25.0%
! ACTCAGTTCAAACTAAAATT+TGG - tig0019188:102018-102037 Msa1371240:intron 25.0%
!! TTCTCTTTTACAACTTATTG+AGG - tig0019188:102209-102228 Msa1371240:intron 25.0%
!!! GATTAGTTCTGGTAAAATAT+TGG - tig0019188:102339-102358 Msa1371240:intron 25.0%
! TGCATTAACAATAGAAACTA+TGG + tig0019188:102480-102499 None:intergenic 25.0%
!!! CATATTACTTTAGAGTGTTT+GGG + tig0019188:102961-102980 None:intergenic 25.0%
!!! CAAACACTCTAAAGTAATAT+GGG - tig0019188:102960-102979 Msa1371240:intron 25.0%
!!! AAACATGTATGGTTTTAAGT+TGG + tig0019188:103263-103282 None:intergenic 25.0%
! AACTTAAAACCATACATGTT+TGG - tig0019188:103262-103281 Msa1371240:intron 25.0%
! ACTTAAAACCATACATGTTT+GGG - tig0019188:103263-103282 Msa1371240:intron 25.0%
! AGACAATTAAATTACAAGGT+GGG + tig0019188:103298-103317 None:intergenic 25.0%
! TACCAGACAATTAAATTACA+AGG + tig0019188:103302-103321 None:intergenic 25.0%
! TAATTTAATTGTCTGGTAGA+GGG - tig0019188:103304-103323 Msa1371240:intron 25.0%
! GGGTTATATGAACATAATAA+TGG - tig0019188:103324-103343 Msa1371240:intron 25.0%
! ATGAACATAATAATGGTTGA+AGG - tig0019188:103331-103350 Msa1371240:intron 25.0%
!! TTGTATACGTATTTTACACA+GGG + tig0019188:103644-103663 None:intergenic 25.0%
!! TATAGAAAAGTTTGGGTTAA+TGG - tig0019188:103677-103696 Msa1371240:five_prime_UTR 25.0%
!! TTTTTATTACAACGTCGAAA+AGG - tig0019188:103726-103745 Msa1371240:five_prime_UTR 25.0%
TAAAAACATTGAAAGGAGCT+AGG - tig0019188:98979-98998 Msa1371240:three_prime_UTR 30.0%
AAATCAAATCAAACCCAGTA+AGG - tig0019188:99059-99078 Msa1371240:three_prime_UTR 30.0%
ATCAAAGTGAATTGAAATGC+CGG - tig0019188:99250-99269 Msa1371240:intron 30.0%
ATATCAACCAAATCTTCTTC+CGG + tig0019188:99272-99291 None:intergenic 30.0%
! ATCAAGTTTAGGTTATACGA+TGG - tig0019188:99290-99309 Msa1371240:intron 30.0%
!! TTATACGATGGTTCTGATAT+TGG - tig0019188:99302-99321 Msa1371240:intron 30.0%
! GTTAGGTTTGATTGTTGATT+AGG - tig0019188:99461-99480 Msa1371240:intron 30.0%
!! TCTTTGAGATGTTAGTTTAG+TGG - tig0019188:99548-99567 Msa1371240:intron 30.0%
ACTTTAAATTTCATCGGCAA+CGG - tig0019188:99581-99600 Msa1371240:intron 30.0%
!! CTTGCTCTTTTCTTTTAAGT+TGG - tig0019188:99651-99670 Msa1371240:intron 30.0%
TCAAAATGAAACTCCTAGTT+TGG + tig0019188:99702-99721 None:intergenic 30.0%
!!! TAGGAGTTTCATTTTGAGTT+TGG - tig0019188:99705-99724 Msa1371240:intron 30.0%
AAAAAACCTGATTCTCTTCT+AGG + tig0019188:100222-100241 None:intergenic 30.0%
!!! AGAAGAGAATCAGGTTTTTT+TGG - tig0019188:100222-100241 Msa1371240:intron 30.0%
!!! GAAGAGAATCAGGTTTTTTT+GGG - tig0019188:100223-100242 Msa1371240:intron 30.0%
!!! AAGAGAATCAGGTTTTTTTG+GGG - tig0019188:100224-100243 Msa1371240:intron 30.0%
TTTAGTAAAATCACTGTGCT+GGG + tig0019188:100317-100336 None:intergenic 30.0%
! TTTTAGTAAAATCACTGTGC+TGG + tig0019188:100318-100337 None:intergenic 30.0%
ACAACACAGAAACCTAAAAT+GGG + tig0019188:100451-100470 None:intergenic 30.0%
AACAACACAGAAACCTAAAA+TGG + tig0019188:100452-100471 None:intergenic 30.0%
AACTCATACAGAATTCTGAT+TGG + tig0019188:101025-101044 None:intergenic 30.0%
AGGAATGAAAAGTAAAAGTG+TGG - tig0019188:101248-101267 Msa1371240:intron 30.0%
AATCTTAAACTCCATTTACC+TGG + tig0019188:101345-101364 None:intergenic 30.0%
ATTTCATCATCTGTGAGATA+TGG + tig0019188:101624-101643 None:intergenic 30.0%
AAAACTAAGATGTGTAGGTA+TGG - tig0019188:101691-101710 Msa1371240:intron 30.0%
ACACTGTCTAACATCATTAA+CGG - tig0019188:101720-101739 Msa1371240:intron 30.0%
! TTTTATGCAAGGAATCGTAA+TGG + tig0019188:101761-101780 None:intergenic 30.0%
ATTACGATTCCTTGCATAAA+AGG - tig0019188:101760-101779 Msa1371240:intron 30.0%
! TAATAGGAACCTTTTATGCA+AGG + tig0019188:101772-101791 None:intergenic 30.0%
ATTCCATGTATTATTGGAAG+GGG + tig0019188:101836-101855 None:intergenic 30.0%
AGTTGTAAAAGAGAACCTAA+AGG + tig0019188:102204-102223 None:intergenic 30.0%
TATTGAGGATTATGTATGCA+CGG - tig0019188:102224-102243 Msa1371240:intron 30.0%
! GAAGTGAAATTGATTAGTTC+TGG - tig0019188:102328-102347 Msa1371240:intron 30.0%
TGAAATAGATGAGGTAGAAA+TGG - tig0019188:102543-102562 Msa1371240:intron 30.0%
! GCTGAAAAACATAATTTGCA+GGG - tig0019188:102565-102584 Msa1371240:intron 30.0%
! TATCTTTTTACCTTGCGTAT+AGG - tig0019188:102646-102665 Msa1371240:intron 30.0%
!! CCATATTACTTTAGAGTGTT+TGG + tig0019188:102962-102981 None:intergenic 30.0%
!! CCAAACACTCTAAAGTAATA+TGG - tig0019188:102959-102978 Msa1371240:intron 30.0%
!!! AATTGGTTTTTATCTTGGAC+AGG + tig0019188:103230-103249 None:intergenic 30.0%
AAGTTGGCAATCATTAGAAT+TGG + tig0019188:103247-103266 None:intergenic 30.0%
CTTAAAACCATACATGTTTG+GGG - tig0019188:103264-103283 Msa1371240:intron 30.0%
TTAAAACCATACATGTTTGG+GGG - tig0019188:103265-103284 Msa1371240:intron 30.0%
CAGACAATTAAATTACAAGG+TGG + tig0019188:103299-103318 None:intergenic 30.0%
CACCTTGTAATTTAATTGTC+TGG - tig0019188:103297-103316 Msa1371240:intron 30.0%
GTAATTTAATTGTCTGGTAG+AGG - tig0019188:103303-103322 Msa1371240:intron 30.0%
ATAACATGCTTCATACTTGA+TGG + tig0019188:103377-103396 None:intergenic 30.0%
! CTTGTATACGTATTTTACAC+AGG + tig0019188:103645-103664 None:intergenic 30.0%
!!! TTTTTTTCTTCTTCGGTTGG+TGG + tig0019188:98948-98967 None:intergenic 35.0%
!!! CCTTTTTTTTCTTCTTCGGT+TGG + tig0019188:98951-98970 None:intergenic 35.0%
CCAACCGAAGAAGAAAAAAA+AGG - tig0019188:98948-98967 Msa1371240:three_prime_UTR 35.0%
GGATCGAATATTACCTTACT+GGG + tig0019188:99075-99094 None:intergenic 35.0%
AGCAAAGAATTGTCTCTGAT+TGG - tig0019188:99366-99385 Msa1371240:intron 35.0%
!!! AGTTTTGGAACTTGTTTGCT+TGG - tig0019188:99499-99518 Msa1371240:intron 35.0%
ATATATGAAGTGGCCAAACT+AGG - tig0019188:99686-99705 Msa1371240:intron 35.0%
! TTGGAGCTGTTGGATTTTTA+TGG - tig0019188:99780-99799 Msa1371240:intron 35.0%
TGGTTGTTTGTGTCAATATG+TGG - tig0019188:99800-99819 Msa1371240:intron 35.0%
!! TCAATATGTGGTGTTGTTCA+TGG - tig0019188:99812-99831 Msa1371240:intron 35.0%
! GTGTTTATGGCCTTAATCTT+GGG + tig0019188:99842-99861 None:intergenic 35.0%
! TGTGTTTATGGCCTTAATCT+TGG + tig0019188:99843-99862 None:intergenic 35.0%
GCTTAAGACGATTGTGTTTA+TGG + tig0019188:99855-99874 None:intergenic 35.0%
TTGTGCTAACTCACCAAATT+AGG - tig0019188:100038-100057 Msa1371240:intron 35.0%
!! ATTCTTTGAGTTGCCCATTT+GGG + tig0019188:100182-100201 None:intergenic 35.0%
!! AATTCTTTGAGTTGCCCATT+TGG + tig0019188:100183-100202 None:intergenic 35.0%
! AACCTAAAATGGGCTTGATT+TGG + tig0019188:100441-100460 None:intergenic 35.0%
TTTCATTCACACAGACAAAC+AGG - tig0019188:100821-100840 Msa1371240:intron 35.0%
TTTATTAAGAGGGTCCATGA+AGG - tig0019188:101174-101193 Msa1371240:intron 35.0%
TCTCTAGACAATGATCACAA+CGG - tig0019188:101310-101329 Msa1371240:intron 35.0%
TCTAATAACCATGTCCTCAT+TGG + tig0019188:101448-101467 None:intergenic 35.0%
AGAGAGGAATGCAAAACAAA+AGG - tig0019188:101481-101500 Msa1371240:intron 35.0%
CAGAGCAGTATATTCTTTCA+TGG + tig0019188:101556-101575 None:intergenic 35.0%
GAAAGAATATACTGCTCTGT+TGG - tig0019188:101557-101576 Msa1371240:intron 35.0%
! AATCATTTTACAGGGTTGAC+CGG + tig0019188:101882-101901 None:intergenic 35.0%
TCAACCCTGTAAAATGATTG+AGG - tig0019188:101883-101902 Msa1371240:intron 35.0%
! GTGTCCTCAATCATTTTACA+GGG + tig0019188:101890-101909 None:intergenic 35.0%
AACATGCTCGGTATAACATT+TGG - tig0019188:101932-101951 Msa1371240:intron 35.0%
! ACTCTCTGCAAGGAAAATTT+TGG - tig0019188:101985-102004 Msa1371240:intron 35.0%
GTTTGAACTGAGTAAGTGAA+GGG + tig0019188:102011-102030 None:intergenic 35.0%
AGTTTGAACTGAGTAAGTGA+AGG + tig0019188:102012-102031 None:intergenic 35.0%
AATACTCATGTAGCTCCTTT+AGG - tig0019188:102186-102205 Msa1371240:intron 35.0%
ATTGAGGATTATGTATGCAC+GGG - tig0019188:102225-102244 Msa1371240:intron 35.0%
! TGTTCTTTTCCCCATAATGT+AGG - tig0019188:102277-102296 Msa1371240:intron 35.0%
! AACGTTTTGCCTACATTATG+GGG + tig0019188:102289-102308 None:intergenic 35.0%
! GAACGTTTTGCCTACATTAT+GGG + tig0019188:102290-102309 None:intergenic 35.0%
!! TTCACTTCATTTGCTGACTT+TGG + tig0019188:102316-102335 None:intergenic 35.0%
TTGGAAAACAACAAGACTGT+TGG - tig0019188:102358-102377 Msa1371240:intron 35.0%
GGCTGAATTACATGTTAATG+TGG + tig0019188:102514-102533 None:intergenic 35.0%
TCATCTATTTCATCAAGAGG+TGG + tig0019188:102535-102554 None:intergenic 35.0%
ACCTCTTGATGAAATAGATG+AGG - tig0019188:102534-102553 Msa1371240:intron 35.0%
ACCTCATCTATTTCATCAAG+AGG + tig0019188:102538-102557 None:intergenic 35.0%
! GGCTGAAAAACATAATTTGC+AGG - tig0019188:102564-102583 Msa1371240:intron 35.0%
! AATTTTCTACAGGGAAAAGC+TGG + tig0019188:102618-102637 None:intergenic 35.0%
!! TTACTTTAGAGTGTTTGGGT+AGG + tig0019188:102957-102976 None:intergenic 35.0%
CTTTGTAACACCGACATTTA+TGG + tig0019188:103128-103147 None:intergenic 35.0%
! ATAACTTCTCAAAGGCATGT+CGG + tig0019188:103158-103177 None:intergenic 35.0%
! CTTTTACTCAACAGAGAAGA+AGG - tig0019188:103481-103500 Msa1371240:five_prime_UTR 35.0%
TGCATAATGGTAGCAATCAA+TGG + tig0019188:103768-103787 None:intergenic 35.0%
TTGATTGCTACCATTATGCA+TGG - tig0019188:103768-103787 Msa1371240:five_prime_UTR 35.0%
GGGATCGAATATTACCTTAC+TGG + tig0019188:99076-99095 None:intergenic 40.0%
TGAAATGCCGGAAGAAGATT+TGG - tig0019188:99262-99281 Msa1371240:intron 40.0%
GTTCTGATATTGGACCCTTT+AGG - tig0019188:99312-99331 Msa1371240:intron 40.0%
GCAGCAGATGAATACCTAAA+GGG + tig0019188:99329-99348 None:intergenic 40.0%
AGCAGCAGATGAATACCTAA+AGG + tig0019188:99330-99349 None:intergenic 40.0%
!! ATTGTCTCTGATTGGCCTAA+AGG - tig0019188:99374-99393 Msa1371240:intron 40.0%
TTAAATTTCATCGGCAACGG+CGG - tig0019188:99584-99603 Msa1371240:intron 40.0%
! AATCAAGGATTTGGAGCTGT+TGG - tig0019188:99770-99789 Msa1371240:intron 40.0%
!!! ACATCTGGTTTTTCCAGAGT+TGG - tig0019188:100149-100168 Msa1371240:intron 40.0%
GCAACTCAAAGAATTGAACC+CGG - tig0019188:100188-100207 Msa1371240:intron 40.0%
CAACTCAAAGAATTGAACCC+GGG - tig0019188:100189-100208 Msa1371240:intron 40.0%
TCTTCTCCTAGAAGAGAATC+AGG - tig0019188:100213-100232 Msa1371240:intron 40.0%
ATTCTTTGAGTCGCCCATTT+GGG + tig0019188:100261-100280 None:intergenic 40.0%
! AGCCAAATCAAGCCCATTTT+AGG - tig0019188:100436-100455 Msa1371240:intron 40.0%
! TCTCGTCTGTGTTAGTTTCA+TGG - tig0019188:100583-100602 Msa1371240:intron 40.0%
! CTCGTCTGTGTTAGTTTCAT+GGG - tig0019188:100584-100603 Msa1371240:intron 40.0%
! TCTGTGTTAGTTTCATGGGT+AGG - tig0019188:100588-100607 Msa1371240:intron 40.0%
! CTGTGTTAGTTTCATGGGTA+GGG - tig0019188:100589-100608 Msa1371240:intron 40.0%
GGTATGAATGTGGGTTCATT+TGG - tig0019188:100610-100629 Msa1371240:intron 40.0%
GAAGACTGAATAATGACGAG+AGG - tig0019188:100637-100656 Msa1371240:intron 40.0%
TGAATAATGACGAGAGGACA+CGG - tig0019188:100643-100662 Msa1371240:intron 40.0%
TTCCTTATCAACAGCCGTTA+CGG - tig0019188:100926-100945 Msa1371240:intron 40.0%
ACTAACTTCGATGTCCGTAA+CGG + tig0019188:100943-100962 None:intergenic 40.0%
!! GAGGCATCGGTTTATTAAGA+GGG - tig0019188:101164-101183 Msa1371240:intron 40.0%
!! GATCTAGTTCTTCACCTTCA+TGG + tig0019188:101191-101210 None:intergenic 40.0%
AGAACTAGATCTAGCATCAG+TGG - tig0019188:101200-101219 Msa1371240:intron 40.0%
GAACTAGATCTAGCATCAGT+GGG - tig0019188:101201-101220 Msa1371240:intron 40.0%
GTGTGGTAGTTGTAGTTAGT+TGG - tig0019188:101265-101284 Msa1371240:intron 40.0%
TCTAGAGACTATGTCCTTGT+TGG + tig0019188:101298-101317 None:intergenic 40.0%
AGACAATGATCACAACGGAT+AGG - tig0019188:101315-101334 Msa1371240:intron 40.0%
AATGATCACAACGGATAGGA+AGG - tig0019188:101319-101338 Msa1371240:intron 40.0%
AAAGGAGAAAACTAGGAGTG+TGG - tig0019188:101402-101421 Msa1371240:intron 40.0%
TGGTAGTTGTAGATTCTGCT+CGG - tig0019188:101422-101441 Msa1371240:intron 40.0%
AGACAACTGTCAGATTAGAG+AGG - tig0019188:101465-101484 Msa1371240:intron 40.0%
GCAAGGAATCGTAATGGTTT+AGG + tig0019188:101755-101774 None:intergenic 40.0%
TGACCCCTTCCAATAATACA+TGG - tig0019188:101830-101849 Msa1371240:intron 40.0%
! GGTGTCCTCAATCATTTTAC+AGG + tig0019188:101891-101910 None:intergenic 40.0%
! GGAACGTTTTGCCTACATTA+TGG + tig0019188:102291-102310 None:intergenic 40.0%
! CACCATTTGGTGATATTGCA+GGG - tig0019188:102392-102411 Msa1371240:intron 40.0%
! ACCATTTGGTGATATTGCAG+GGG - tig0019188:102393-102412 Msa1371240:intron 40.0%
GCCATCTCTAGCAAAATCTA+AGG - tig0019188:102444-102463 Msa1371240:intron 40.0%
! GCCTTAGATTTTGCTAGAGA+TGG + tig0019188:102448-102467 None:intergenic 40.0%
! TCTCTAGCAAAATCTAAGGC+TGG - tig0019188:102448-102467 Msa1371240:intron 40.0%
GTAACAAAGTCCTATACGCA+AGG + tig0019188:102659-102678 None:intergenic 40.0%
TAGAAGTCGTTGAAAGCCTA+AGG - tig0019188:102707-102726 Msa1371240:intron 40.0%
TTGAAAGCCTAAGGTGTGTT+TGG - tig0019188:102716-102735 Msa1371240:intron 40.0%
CTAAGGTGTGTTTGGATTGA+GGG - tig0019188:102724-102743 Msa1371240:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - tig0019188:102730-102749 Msa1371240:intron 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG - tig0019188:102739-102758 Msa1371240:intron 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG - tig0019188:102740-102759 Msa1371240:intron 40.0%
! TTTAGAGTGTTTGGGTAGGA+GGG + tig0019188:102953-102972 None:intergenic 40.0%
AACCTATGAAGCACAAACAC+TGG - tig0019188:102989-103008 Msa1371240:intron 40.0%
ACACCTTGGACCATAAATGT+CGG - tig0019188:103115-103134 Msa1371240:intron 40.0%
GTTTAGTAGATGAGATGCCT+CGG + tig0019188:103181-103200 None:intergenic 40.0%
! GGTTTTTATCTTGGACAGGT+GGG + tig0019188:103226-103245 None:intergenic 40.0%
! TGGTTTTTATCTTGGACAGG+TGG + tig0019188:103227-103246 None:intergenic 40.0%
TAATGGTTGAAGGAGATACC+TGG - tig0019188:103341-103360 Msa1371240:intron 40.0%
AATGGTTGAAGGAGATACCT+GGG - tig0019188:103342-103361 Msa1371240:intron 40.0%
ACAAGAACAGACAACCTTCT+TGG + tig0019188:103519-103538 None:intergenic 40.0%
TGTGAAGACAGTTTGTGAGT+TGG - tig0019188:103546-103565 Msa1371240:intron 40.0%
! ATCAAGCAGATGGTTTTCTG+TGG + tig0019188:103598-103617 None:intergenic 40.0%
AAGGATTTCGATCAAGCAGA+TGG + tig0019188:103608-103627 None:intergenic 40.0%
ACAGGGATGCTGAAAATAGA+AGG + tig0019188:103627-103646 None:intergenic 40.0%
AGTGAAAACGCCATGCATAA+TGG + tig0019188:103781-103800 None:intergenic 40.0%
!! TATGTGGTGTTGTTCATGGC+TGG - tig0019188:99816-99835 Msa1371240:intron 45.0%
CGGGGTCAAAGATCCTAATT+TGG + tig0019188:100054-100073 None:intergenic 45.0%
!! ACTTGAGGATTGGTCCCATA+GGG + tig0019188:100119-100138 None:intergenic 45.0%
ACCAATCCTCAAGTCGACAA+CGG - tig0019188:100125-100144 Msa1371240:intron 45.0%
AGTTGGACTACCTCCCAAAT+GGG - tig0019188:100166-100185 Msa1371240:intron 45.0%
! TCTCTTCTAGGAGAAGAACC+CGG + tig0019188:100210-100229 None:intergenic 45.0%
!!! GAATCAGGTTTTTTTGGGGC+TGG - tig0019188:100228-100247 Msa1371240:intron 45.0%
GATTCTTTGAGTCGCCCATT+TGG + tig0019188:100262-100281 None:intergenic 45.0%
CGACTCAAAGAATCGAACCT+GGG - tig0019188:100268-100287 Msa1371240:intron 45.0%
! CTCTTCTAGGAAAAGAACCC+AGG + tig0019188:100288-100307 None:intergenic 45.0%
!! GGGCTTGATTTGGCTTACAT+TGG + tig0019188:100431-100450 None:intergenic 45.0%
TCATGGGTAGGGTATGAATG+TGG - tig0019188:100600-100619 Msa1371240:intron 45.0%
CATGGGTAGGGTATGAATGT+GGG - tig0019188:100601-100620 Msa1371240:intron 45.0%
GAATAATGACGAGAGGACAC+GGG - tig0019188:100644-100663 Msa1371240:intron 45.0%
ACAAACAGGCGTATAGCTCT+TGG - tig0019188:100835-100854 Msa1371240:intron 45.0%
GAGATCATGAGACTAGGAGA+GGG + tig0019188:101076-101095 None:intergenic 45.0%
GGAATGGAGATCATGAGACT+AGG + tig0019188:101082-101101 None:intergenic 45.0%
TTGGCACCACTTGATTCAAG+TGG - tig0019188:101142-101161 Msa1371240:intron 45.0%
ATGCCTCCACTTGAATCAAG+TGG + tig0019188:101151-101170 None:intergenic 45.0%
! CTTGATTCAAGTGGAGGCAT+CGG - tig0019188:101151-101170 Msa1371240:intron 45.0%
!! GGAGGCATCGGTTTATTAAG+AGG - tig0019188:101163-101182 Msa1371240:intron 45.0%
ATCTAGCATCAGTGGGAAAG+AGG - tig0019188:101208-101227 Msa1371240:intron 45.0%
AGTGGGAAAGAGGAAAAGCA+TGG - tig0019188:101218-101237 Msa1371240:intron 45.0%
! AGGAAAAGCATGGCAGAAGT+AGG - tig0019188:101228-101247 Msa1371240:intron 45.0%
ACAGAAAAGGTGGAAACGAG+AGG - tig0019188:101594-101613 Msa1371240:intron 45.0%
TTGTCGTCAAACTCTCTGCA+AGG - tig0019188:101975-101994 Msa1371240:intron 45.0%
!! CTTCATTTGCTGACTTTGGC+AGG + tig0019188:102312-102331 None:intergenic 45.0%
! GGTCAGTGTAAAGCACCATT+TGG - tig0019188:102379-102398 Msa1371240:intron 45.0%
! GCACCATTTGGTGATATTGC+AGG - tig0019188:102391-102410 Msa1371240:intron 45.0%
! CCATTTGGTGATATTGCAGG+GGG - tig0019188:102394-102413 Msa1371240:intron 45.0%
! CATTTGGTGATATTGCAGGG+GGG - tig0019188:102395-102414 Msa1371240:intron 45.0%
! ATTTGGTGATATTGCAGGGG+GGG - tig0019188:102396-102415 Msa1371240:intron 45.0%
CCTCAATCCAAACACACCTT+AGG + tig0019188:102726-102745 None:intergenic 45.0%
CCTAAGGTGTGTTTGGATTG+AGG - tig0019188:102723-102742 Msa1371240:intron 45.0%
!! CTTTAGAGTGTTTGGGTAGG+AGG + tig0019188:102954-102973 None:intergenic 45.0%
GTCCAGTGTTTGTGCTTCAT+AGG + tig0019188:102994-103013 None:intergenic 45.0%
GTAATCACATGCCTCGTTGT+CGG - tig0019188:103066-103085 Msa1371240:intron 45.0%
TTTATGGTCCAAGGTGTGTC+TGG + tig0019188:103112-103131 None:intergenic 45.0%
ACACCGACATTTATGGTCCA+AGG + tig0019188:103121-103140 None:intergenic 45.0%
! TGCCTTTGAGAAGTTATCCG+AGG - tig0019188:103161-103180 Msa1371240:intron 45.0%
TGCCTCGGATAACTTCTCAA+AGG + tig0019188:103166-103185 None:intergenic 45.0%
CAACTTCCCCCAAACATGTA+TGG + tig0019188:103274-103293 None:intergenic 45.0%
GGTTGACGATTCATCCAAGA+AGG - tig0019188:103502-103521 Msa1371240:five_prime_UTR 45.0%
!!! ATGTTTTTTTAAAATATTTT+TGG + tig0019188:99880-99899 None:intergenic 5.0%
! TCATGGCTGGCCCAAGATTA+AGG - tig0019188:99829-99848 Msa1371240:intron 50.0%
TAGGATCTTTGACCCCGAGT+AGG - tig0019188:100057-100076 Msa1371240:intron 50.0%
TAAGCCGTCAGGATACCTTG+AGG + tig0019188:100085-100104 None:intergenic 50.0%
!! GACTTGAGGATTGGTCCCAT+AGG + tig0019188:100120-100139 None:intergenic 50.0%
CCAATCCTCAAGTCGACAAC+GGG - tig0019188:100126-100145 Msa1371240:intron 50.0%
TTTGGGAGGTAGTCCAACTC+TGG + tig0019188:100165-100184 None:intergenic 50.0%
GAGTTGGACTACCTCCCAAA+TGG - tig0019188:100165-100184 Msa1371240:intron 50.0%
!! CTTTGAGTTGCCCATTTGGG+AGG + tig0019188:100179-100198 None:intergenic 50.0%
! CTCTTCTAGGAGAAGAACCC+GGG + tig0019188:100209-100228 None:intergenic 50.0%
GCGACTCAAAGAATCGAACC+TGG - tig0019188:100267-100286 Msa1371240:intron 50.0%
TGCTGGGATGACTCTCTTCT+AGG + tig0019188:100301-100320 None:intergenic 50.0%
GTCCGTAACGGCTGTTGATA+AGG + tig0019188:100931-100950 None:intergenic 50.0%
GGAGATCATGAGACTAGGAG+AGG + tig0019188:101077-101096 None:intergenic 50.0%
CCAGAATTGGACAGCTGGAA+TGG + tig0019188:101098-101117 None:intergenic 50.0%
CCATTCCAGCTGTCCAATTC+TGG - tig0019188:101095-101114 Msa1371240:intron 50.0%
ATCAGTCACAGACACAGGGA+CGG + tig0019188:101123-101142 None:intergenic 50.0%
TCCCTGTGTCTGTGACTGAT+TGG - tig0019188:101123-101142 Msa1371240:intron 50.0%
GCCAATCAGTCACAGACACA+GGG + tig0019188:101127-101146 None:intergenic 50.0%
TGCCAATCAGTCACAGACAC+AGG + tig0019188:101128-101147 None:intergenic 50.0%
GCACCACTTGATTCAAGTGG+AGG - tig0019188:101145-101164 Msa1371240:intron 50.0%
! TAGTTGGTGCTCAGCCAACA+AGG - tig0019188:101281-101300 Msa1371240:intron 50.0%
GGATAGGAAGGCCAGGTAAA+TGG - tig0019188:101331-101350 Msa1371240:intron 50.0%
TAGATTCTGCTCGGCCAATG+AGG - tig0019188:101431-101450 Msa1371240:intron 50.0%
CCCCCTGCAATATCACCAAA+TGG + tig0019188:102397-102416 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG - tig0019188:102743-102762 Msa1371240:intron 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG - tig0019188:102744-102763 Msa1371240:intron 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG - tig0019188:102745-102764 Msa1371240:intron 50.0%
TTGGGTAGGAGGGTTTAGGA+GGG + tig0019188:102943-102962 None:intergenic 50.0%
TTTGGGTAGGAGGGTTTAGG+AGG + tig0019188:102944-102963 None:intergenic 50.0%
GTGTTTGGGTAGGAGGGTTT+AGG + tig0019188:102947-102966 None:intergenic 50.0%
CGTGTTAGTATCCGACAACG+AGG + tig0019188:103080-103099 None:intergenic 50.0%
GTTAGACACCAGACACACCT+TGG - tig0019188:103101-103120 Msa1371240:intron 50.0%
!! CTTGATGGTGACTCTAACCC+AGG + tig0019188:103362-103381 None:intergenic 50.0%
! ATACCTTGAGGCGCCTACTC+GGG + tig0019188:100073-100092 None:intergenic 55.0%
! GATACCTTGAGGCGCCTACT+CGG + tig0019188:100074-100093 None:intergenic 55.0%
TTAGCCCCTTTGGGCCCTAT+GGG - tig0019188:100102-100121 Msa1371240:intron 55.0%
TTGGTCCCATAGGGCCCAAA+GGG + tig0019188:100110-100129 None:intergenic 55.0%
ATTGGTCCCATAGGGCCCAA+AGG + tig0019188:100111-100130 None:intergenic 55.0%
!! CCCGTTGTCGACTTGAGGAT+TGG + tig0019188:100129-100148 None:intergenic 55.0%
!! GATGTCCCGTTGTCGACTTG+AGG + tig0019188:100134-100153 None:intergenic 55.0%
CAAGTCGACAACGGGACATC+TGG - tig0019188:100134-100153 Msa1371240:intron 55.0%
GGCTGGACTACCTCCCAAAT+GGG - tig0019188:100245-100264 Msa1371240:intron 55.0%
CTTTGAGTCGCCCATTTGGG+AGG + tig0019188:100258-100277 None:intergenic 55.0%
TCACAACGGATAGGAAGGCC+AGG - tig0019188:101324-101343 Msa1371240:intron 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG - tig0019188:102748-102767 Msa1371240:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG - tig0019188:102749-102768 Msa1371240:intron 55.0%
AGGAGGGTTTAGGAGGGGAA+GGG + tig0019188:102937-102956 None:intergenic 55.0%
TAGGAGGGTTTAGGAGGGGA+AGG + tig0019188:102938-102957 None:intergenic 55.0%
TGGGTAGGAGGGTTTAGGAG+GGG + tig0019188:102942-102961 None:intergenic 55.0%
! TACCTTGAGGCGCCTACTCG+GGG + tig0019188:100072-100091 None:intergenic 60.0%
! GGCGCCTCAAGGTATCCTGA+CGG - tig0019188:100078-100097 Msa1371240:intron 60.0%
TCCTGACGGCTTAGCCCCTT+TGG - tig0019188:100092-100111 Msa1371240:intron 60.0%
CCTGACGGCTTAGCCCCTTT+GGG - tig0019188:100093-100112 Msa1371240:intron 60.0%
CTTAGCCCCTTTGGGCCCTA+TGG - tig0019188:100101-100120 Msa1371240:intron 60.0%
TGGTCCCATAGGGCCCAAAG+GGG + tig0019188:100109-100128 None:intergenic 60.0%
GGGCTGGACTACCTCCCAAA+TGG - tig0019188:100244-100263 Msa1371240:intron 60.0%
CGGAGCCAGAATTGGACAGC+TGG + tig0019188:101103-101122 None:intergenic 60.0%
CACAGGGACGGAGCCAGAAT+TGG + tig0019188:101111-101130 None:intergenic 60.0%
CTGCTCGGCCAATGAGGACA+TGG - tig0019188:101437-101456 Msa1371240:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + tig0019188:102932-102951 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + tig0019188:102933-102952 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + tig0019188:102934-102953 None:intergenic 60.0%
CCCAAAGGGGCTAAGCCGTC+AGG + tig0019188:100096-100115 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + tig0019188:102928-102947 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + tig0019188:102929-102948 None:intergenic 65.0%
GACCCCGAGTAGGCGCCTCA+AGG - tig0019188:100067-100086 Msa1371240:intron 70.0%
Chromosome Type Strat End Strand Name
tig0019188 gene 98928 103811 98928 ID=Msa1371240;Name=Msa1371240
tig0019188 mRNA 98928 103811 98928 ID=Msa1371240-mRNA-1;Parent=Msa1371240;Name=Msa1371240-mRNA-1;_AED=0.17;_eAED=0.17;_QI=231|1|1|1|0.66|0.5|4|261|118
tig0019188 exon 98928 99244 98928 ID=Msa1371240-mRNA-1:exon:2134;Parent=Msa1371240-mRNA-1
tig0019188 exon 100270 100440 100270 ID=Msa1371240-mRNA-1:exon:2133;Parent=Msa1371240-mRNA-1
tig0019188 exon 103344 103551 103344 ID=Msa1371240-mRNA-1:exon:2132;Parent=Msa1371240-mRNA-1
tig0019188 exon 103659 103811 103659 ID=Msa1371240-mRNA-1:exon:2131;Parent=Msa1371240-mRNA-1
tig0019188 five_prime_UTR 103659 103811 103659 ID=Msa1371240-mRNA-1:five_prime_utr;Parent=Msa1371240-mRNA-1
tig0019188 five_prime_UTR 103474 103551 103474 ID=Msa1371240-mRNA-1:five_prime_utr;Parent=Msa1371240-mRNA-1
tig0019188 CDS 103344 103473 103344 ID=Msa1371240-mRNA-1:cds;Parent=Msa1371240-mRNA-1
tig0019188 CDS 100270 100440 100270 ID=Msa1371240-mRNA-1:cds;Parent=Msa1371240-mRNA-1
tig0019188 CDS 99189 99244 99189 ID=Msa1371240-mRNA-1:cds;Parent=Msa1371240-mRNA-1
tig0019188 three_prime_UTR 98928 99188 98928 ID=Msa1371240-mRNA-1:three_prime_utr;Parent=Msa1371240-mRNA-1
Gene Sequence

>Msa1371240

ATGCCGGAAGAAGATTTGGTTGATATCAAGTTTAGGTTATACGATGGTTCTGATATTGGACCCTTTAGGTATTCATCTGCTGCTACTGTTGATATGCTTAAGCAAAGAATTGTCTCTGATTGGCCTAAAGGCAAAACGTTCCTGCCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATATTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGCACCATTTGGTGATATTGCAGGGGGGGTTATAATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAGGCTGAGAAGAAGGTTGACGATTCATCCAAGAAGGTTGTCTGTTCTTGTTCTATAATGTGA

Protein sequence

>Msa1371240

MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTFLPKSANEVKLISSGKILENNKTVGQCKAPFGDIAGGVIIMHVVVQPSLAKSKAEKKVDDSSKKVVCSCSIM*