Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604610 | KEH30332.1 | 96.078 | 255 | 9 | 1 | 18 | 271 | 43 | 297 | 7.36e-179 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604610 | sp|Q9SZL8|FRS5_ARATH | 54.630 | 108 | 45 | 2 | 89 | 192 | 72 | 179 | 1.97e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0604610 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604610 | Msa1452170 | 0.948728 | 5.304897e-107 | -8.615850e-47 |
| Msa0578260 | Msa0604610 | 0.969604 | 2.284061e-130 | -8.615850e-47 |
| Msa0578280 | Msa0604610 | 0.945639 | 2.093168e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604610 | MtrunA17_Chr4g0033611 | 95.331 | 257 | 11 | 1 | 16 | 271 | 1 | 257 | 8.52e-175 | 482 |
| Msa0604610 | MtrunA17_Chr2g0329421 | 70.388 | 206 | 56 | 4 | 64 | 267 | 1 | 203 | 1.57e-100 | 292 |
| Msa0604610 | MtrunA17_Chr3g0078041 | 43.684 | 190 | 97 | 3 | 84 | 269 | 44 | 227 | 1.15e-43 | 148 |
| Msa0604610 | MtrunA17_Chr2g0329361 | 36.923 | 195 | 105 | 6 | 82 | 262 | 53 | 243 | 8.84e-35 | 125 |
| Msa0604610 | MtrunA17_Chr7g0233911 | 36.559 | 186 | 105 | 4 | 82 | 262 | 26 | 203 | 2.99e-33 | 120 |
| Msa0604610 | MtrunA17_Chr5g0448761 | 50.862 | 116 | 52 | 3 | 82 | 192 | 52 | 167 | 1.77e-22 | 96.7 |
| Msa0604610 | MtrunA17_Chr2g0287061 | 42.202 | 109 | 51 | 1 | 89 | 197 | 182 | 278 | 1.99e-21 | 93.6 |
| Msa0604610 | MtrunA17_Chr2g0287061 | 37.255 | 102 | 52 | 1 | 89 | 190 | 28 | 117 | 2.62e-16 | 78.6 |
| Msa0604610 | MtrunA17_Chr1g0203721 | 36.943 | 157 | 87 | 5 | 61 | 208 | 27 | 180 | 4.32e-20 | 89.7 |
| Msa0604610 | MtrunA17_Chr3g0082121 | 44.860 | 107 | 53 | 3 | 90 | 192 | 43 | 147 | 5.85e-20 | 89.4 |
| Msa0604610 | MtrunA17_Chr5g0401121 | 42.593 | 108 | 56 | 3 | 90 | 193 | 56 | 161 | 2.27e-19 | 82.8 |
| Msa0604610 | MtrunA17_Chr6g0458391 | 38.679 | 106 | 64 | 1 | 90 | 194 | 225 | 330 | 3.52e-19 | 87.0 |
| Msa0604610 | MtrunA17_Chr6g0458391 | 36.283 | 113 | 67 | 1 | 81 | 188 | 77 | 189 | 1.96e-15 | 75.9 |
| Msa0604610 | MtrunA17_Chr1g0202341 | 33.582 | 134 | 77 | 3 | 64 | 190 | 25 | 153 | 1.66e-18 | 85.1 |
| Msa0604610 | MtrunA17_Chr5g0440451 | 39.216 | 102 | 50 | 2 | 89 | 190 | 42 | 131 | 9.83e-16 | 77.0 |
| Msa0604610 | MtrunA17_Chr2g0291581 | 34.328 | 134 | 83 | 2 | 90 | 222 | 71 | 200 | 4.22e-15 | 75.1 |
| Msa0604610 | MtrunA17_Chr2g0291591 | 34.615 | 104 | 65 | 1 | 89 | 192 | 63 | 163 | 7.35e-15 | 74.3 |
| Msa0604610 | MtrunA17_Chr3g0080351 | 29.577 | 142 | 85 | 3 | 69 | 195 | 54 | 195 | 1.58e-13 | 70.5 |
| Msa0604610 | MtrunA17_Chr7g0258861 | 36.364 | 110 | 66 | 3 | 89 | 195 | 9 | 117 | 1.92e-12 | 66.2 |
| Msa0604610 | MtrunA17_Chr1g0207551 | 28.788 | 132 | 92 | 2 | 63 | 193 | 6 | 136 | 1.12e-11 | 64.7 |
| Msa0604610 | MtrunA17_Chr2g0329031 | 32.143 | 112 | 70 | 3 | 86 | 195 | 10 | 117 | 3.90e-11 | 63.2 |
| Msa0604610 | MtrunA17_Chr2g0276841 | 28.636 | 220 | 131 | 11 | 61 | 266 | 42 | 249 | 9.79e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604610 | AT3G59470.2 | 54.545 | 264 | 107 | 5 | 18 | 271 | 1 | 261 | 2.37e-95 | 281 |
| Msa0604610 | AT3G59470.3 | 63.084 | 214 | 69 | 4 | 59 | 271 | 45 | 249 | 3.38e-94 | 278 |
| Msa0604610 | AT3G59470.1 | 63.084 | 214 | 69 | 4 | 59 | 271 | 45 | 249 | 3.38e-94 | 278 |
| Msa0604610 | AT3G07500.1 | 42.938 | 177 | 98 | 3 | 89 | 262 | 32 | 208 | 4.50e-44 | 149 |
| Msa0604610 | AT2G43280.1 | 38.571 | 210 | 105 | 5 | 58 | 262 | 2 | 192 | 2.72e-37 | 131 |
| Msa0604610 | AT4G12850.1 | 36.264 | 182 | 108 | 3 | 84 | 264 | 5 | 179 | 1.66e-32 | 118 |
| Msa0604610 | AT2G43280.2 | 39.877 | 163 | 86 | 4 | 105 | 262 | 2 | 157 | 6.59e-31 | 113 |
| Msa0604610 | AT4G12850.2 | 41.463 | 123 | 69 | 2 | 84 | 205 | 5 | 125 | 7.26e-25 | 97.1 |
| Msa0604610 | AT4G38180.1 | 54.630 | 108 | 45 | 2 | 89 | 192 | 72 | 179 | 2.01e-24 | 102 |
| Msa0604610 | AT4G12850.4 | 42.056 | 107 | 60 | 1 | 84 | 190 | 5 | 109 | 1.02e-23 | 94.0 |
| Msa0604610 | AT5G18960.2 | 36.879 | 141 | 63 | 2 | 50 | 190 | 17 | 131 | 1.60e-22 | 97.4 |
| Msa0604610 | AT5G18960.2 | 37.963 | 108 | 55 | 1 | 86 | 193 | 207 | 302 | 9.78e-20 | 89.4 |
| Msa0604610 | AT5G18960.1 | 36.879 | 141 | 63 | 2 | 50 | 190 | 17 | 131 | 1.60e-22 | 97.4 |
| Msa0604610 | AT5G18960.1 | 37.963 | 108 | 55 | 1 | 86 | 193 | 207 | 302 | 9.78e-20 | 89.4 |
| Msa0604610 | AT3G06250.2 | 38.793 | 116 | 59 | 1 | 87 | 202 | 187 | 290 | 5.34e-21 | 92.8 |
| Msa0604610 | AT3G06250.2 | 40.952 | 105 | 50 | 1 | 86 | 190 | 24 | 116 | 2.56e-20 | 90.9 |
| Msa0604610 | AT3G06250.1 | 38.793 | 116 | 59 | 1 | 87 | 202 | 187 | 290 | 5.34e-21 | 92.8 |
| Msa0604610 | AT3G06250.1 | 40.952 | 105 | 50 | 1 | 86 | 190 | 24 | 116 | 2.56e-20 | 90.9 |
| Msa0604610 | AT3G06250.3 | 38.793 | 116 | 59 | 1 | 87 | 202 | 187 | 290 | 5.34e-21 | 92.8 |
| Msa0604610 | AT3G06250.3 | 40.952 | 105 | 50 | 1 | 86 | 190 | 24 | 116 | 2.56e-20 | 90.9 |
| Msa0604610 | AT1G52520.1 | 39.604 | 101 | 58 | 1 | 90 | 190 | 85 | 182 | 1.51e-17 | 82.8 |
| Msa0604610 | AT1G80010.1 | 37.736 | 106 | 63 | 1 | 87 | 192 | 92 | 194 | 2.69e-16 | 79.0 |
| Msa0604610 | AT2G32250.6 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 5.54e-15 | 75.1 |
| Msa0604610 | AT2G32250.1 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 5.54e-15 | 75.1 |
| Msa0604610 | AT2G32250.3 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 5.54e-15 | 75.1 |
| Msa0604610 | AT2G32250.5 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 5.92e-15 | 75.1 |
| Msa0604610 | AT2G32250.2 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 6.08e-15 | 75.1 |
| Msa0604610 | AT2G32250.4 | 38.182 | 110 | 62 | 2 | 85 | 192 | 33 | 138 | 6.08e-15 | 75.1 |
| Msa0604610 | AT4G19990.7 | 28.966 | 145 | 75 | 2 | 93 | 223 | 38 | 168 | 2.34e-14 | 73.2 |
| Msa0604610 | AT4G19990.3 | 28.966 | 145 | 75 | 2 | 93 | 223 | 24 | 154 | 2.52e-14 | 73.2 |
| Msa0604610 | AT4G19990.4 | 28.966 | 145 | 75 | 2 | 93 | 223 | 24 | 154 | 2.52e-14 | 73.2 |
| Msa0604610 | AT4G19990.5 | 28.966 | 145 | 75 | 2 | 93 | 223 | 24 | 154 | 2.57e-14 | 73.2 |
| Msa0604610 | AT4G19990.6 | 28.966 | 145 | 75 | 2 | 93 | 223 | 24 | 154 | 2.57e-14 | 73.2 |
| Msa0604610 | AT4G19990.2 | 28.966 | 145 | 75 | 2 | 93 | 223 | 24 | 154 | 2.57e-14 | 73.2 |
| Msa0604610 | AT2G32250.8 | 39.000 | 100 | 55 | 2 | 95 | 192 | 2 | 97 | 5.54e-14 | 72.0 |
| Msa0604610 | AT2G32250.7 | 39.000 | 100 | 55 | 2 | 95 | 192 | 2 | 97 | 5.71e-14 | 72.0 |
| Msa0604610 | AT3G22170.2 | 29.752 | 121 | 71 | 2 | 89 | 195 | 69 | 189 | 2.48e-11 | 64.3 |
| Msa0604610 | AT3G22170.1 | 29.752 | 121 | 71 | 2 | 89 | 195 | 69 | 189 | 2.48e-11 | 64.3 |
Find 73 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATTAATTCTGGTAAA+TGG | 0.122359 | 4_2:-50252689 | Msa0604610:CDS |
| ATACTCCAAATTGGAAAGTA+TGG | 0.233487 | 4_2:-50253653 | Msa0604610:CDS |
| GATATCCATACTTTCCAATT+TGG | 0.236968 | 4_2:+50253648 | None:intergenic |
| GAGATTGATGACTCTGTTAA+TGG | 0.238281 | 4_2:-50253137 | Msa0604610:CDS |
| AAAGCTTTGATACTCCAAAT+TGG | 0.289951 | 4_2:-50253662 | Msa0604610:CDS |
| CAGAAACAAGGGTTGGTTGC+AGG | 0.300475 | 4_2:-50252728 | Msa0604610:CDS |
| TTATGTTCTTCTTCTTCTTT+AGG | 0.309765 | 4_2:+50251788 | None:intergenic |
| CAATTGTGATAACTCATAAA+AGG | 0.333301 | 4_2:-50251499 | Msa0604610:three_prime_UTR |
| GAAAATTAATTCTGGTAAAT+GGG | 0.333770 | 4_2:-50252688 | Msa0604610:CDS |
| ATGATGAGGAAAATTAATTC+TGG | 0.337234 | 4_2:-50252696 | Msa0604610:CDS |
| ATATCCTTTCTACTACTTCC+AGG | 0.355137 | 4_2:+50252624 | None:intergenic |
| AGGAAAGACGGAACTGCTAT+TGG | 0.388968 | 4_2:-50252822 | Msa0604610:CDS |
| AACGTGACTCAAGATTCTTC+TGG | 0.391633 | 4_2:-50253011 | Msa0604610:CDS |
| CTTGAGTCACGTTATCATCT+TGG | 0.395456 | 4_2:+50253021 | None:intergenic |
| TCTTGGTCTTGTTTGTAAGA+TGG | 0.422563 | 4_2:+50253038 | None:intergenic |
| TCTACTACTTCCAGGATTCA+AGG | 0.432111 | 4_2:+50252632 | None:intergenic |
| TATTATTGCACACCTCATCT+TGG | 0.432815 | 4_2:+50251687 | None:intergenic |
| AGAAGAACATAATCATTGAT+AGG | 0.432866 | 4_2:-50251777 | Msa0604610:exon |
| GGATATGTTTGAAATTTATC+CGG | 0.433360 | 4_2:-50252607 | Msa0604610:intron |
| TGAGGAGCCCTATGTGGGTC+AGG | 0.445713 | 4_2:-50252937 | Msa0604610:CDS |
| TCTTCTTCTATGTATTCCTC+AGG | 0.455153 | 4_2:+50253071 | None:intergenic |
| GGAATAATTAAGCGCTATCA+AGG | 0.466188 | 4_2:+50251466 | None:intergenic |
| TAAGCAAGCTCTCACGATCA+AGG | 0.471737 | 4_2:-50252842 | Msa0604610:CDS |
| CACACACATCCCTTGAATCC+TGG | 0.472295 | 4_2:-50252642 | Msa0604610:CDS |
| TGAGTCTATTCATATGAAGT+TGG | 0.472796 | 4_2:-50251528 | Msa0604610:three_prime_UTR |
| GGCTCCTCAGCAGAAGCGTC+TGG | 0.483303 | 4_2:+50252951 | None:intergenic |
| TTCTGCTGAGGAGCCCTATG+TGG | 0.483552 | 4_2:-50252943 | Msa0604610:CDS |
| CCAACTGCTGAGATAGTTCG+CGG | 0.495662 | 4_2:+50251939 | None:intergenic |
| AGTAGACAGTGTGAAGGAGA+TGG | 0.496746 | 4_2:-50251813 | Msa0604610:CDS |
| CTACTACTTCCAGGATTCAA+GGG | 0.508347 | 4_2:+50252633 | None:intergenic |
| AGAAACAAGGGTTGGTTGCA+GGG | 0.508414 | 4_2:-50252727 | Msa0604610:CDS |
| AAATGTTGCAAAATCAGCTA+TGG | 0.513100 | 4_2:+50251445 | None:intergenic |
| GGTAGTGTGGGAACTGCAGC+GGG | 0.515950 | 4_2:+50252972 | None:intergenic |
| GGTTATTACGAAGTTTGTAA+AGG | 0.521568 | 4_2:-50252667 | Msa0604610:CDS |
| AGCAGAAGCGTCTGGTAGTG+TGG | 0.524624 | 4_2:+50252959 | None:intergenic |
| AATGCATACGCAGCCGAGGT+TGG | 0.541461 | 4_2:-50252879 | Msa0604610:CDS |
| CGAAAAGATTGTGAGGCAAA+GGG | 0.544339 | 4_2:-50252751 | Msa0604610:CDS |
| GCGAAAAGATTGTGAGGCAA+AGG | 0.552809 | 4_2:-50252752 | Msa0604610:CDS |
| AGCATAATGTGGGTCTCTCA+AGG | 0.559262 | 4_2:-50251850 | Msa0604610:CDS |
| GGCTCTTGTTTGCAACAAAG+AGG | 0.560233 | 4_2:-50252796 | Msa0604610:CDS |
| TATCTAATAACTGCTGACAT+AGG | 0.563093 | 4_2:-50251666 | Msa0604610:three_prime_UTR |
| TGGTAGTGTGGGAACTGCAG+CGG | 0.563388 | 4_2:+50252971 | None:intergenic |
| TCGAACTCCTGACCCACATA+GGG | 0.565037 | 4_2:+50252930 | None:intergenic |
| CTCGAACTCCTGACCCACAT+AGG | 0.567393 | 4_2:+50252929 | None:intergenic |
| GAATCCTGGAAGTAGTAGAA+AGG | 0.569556 | 4_2:-50252628 | Msa0604610:CDS |
| GATGGTGCCATGGTTGTAGC+TGG | 0.569629 | 4_2:-50253101 | Msa0604610:CDS |
| CCGCGAACTATCTCAGCAGT+TGG | 0.570583 | 4_2:-50251939 | Msa0604610:CDS |
| GCTCTTGTTTGCAACAAAGA+GGG | 0.580043 | 4_2:-50252795 | Msa0604610:CDS |
| TGAGGCAAAGGGCAGAAACA+AGG | 0.583136 | 4_2:-50252740 | Msa0604610:CDS |
| GCAGAAGCGTCTGGTAGTGT+GGG | 0.584434 | 4_2:+50252960 | None:intergenic |
| AGACGGAACTGCTATTGGAC+GGG | 0.589838 | 4_2:-50252817 | Msa0604610:CDS |
| CTCTCACGATCAAGGAAAGA+CGG | 0.590017 | 4_2:-50252834 | Msa0604610:CDS |
| TCTGCTGAGGAGCCCTATGT+GGG | 0.595284 | 4_2:-50252942 | Msa0604610:CDS |
| TTAGTATTAATATGATACAA+TGG | 0.596314 | 4_2:-50251634 | Msa0604610:three_prime_UTR |
| AAGACGGAACTGCTATTGGA+CGG | 0.612304 | 4_2:-50252818 | Msa0604610:CDS |
| CTTCATATGAATAGACTCAA+AGG | 0.619140 | 4_2:+50251532 | None:intergenic |
| AGTGATATTTGATTATATCG+AGG | 0.622955 | 4_2:-50251873 | Msa0604610:CDS |
| CAAAGGGCAGAAACAAGGGT+TGG | 0.628129 | 4_2:-50252735 | Msa0604610:CDS |
| TTACAATGCATACGCAGCCG+AGG | 0.629238 | 4_2:-50252883 | Msa0604610:CDS |
| TATGCTACCAGCTACAACCA+TGG | 0.631572 | 4_2:+50253094 | None:intergenic |
| GCGTATAGTAGACAGTGTGA+AGG | 0.633138 | 4_2:-50251819 | Msa0604610:CDS |
| TACAGTAAGAGATGGTGCCA+TGG | 0.635293 | 4_2:-50253111 | Msa0604610:CDS |
| TTATATCGAGGAGCATAATG+TGG | 0.635828 | 4_2:-50251861 | Msa0604610:CDS |
| TATATCGAGGAGCATAATGT+GGG | 0.635920 | 4_2:-50251860 | Msa0604610:CDS |
| AATGGCGATACAGTAAGAGA+TGG | 0.645018 | 4_2:-50253119 | Msa0604610:CDS |
| ACTACCAGACGCTTCTGCTG+AGG | 0.646967 | 4_2:-50252955 | Msa0604610:CDS |
| GAGGCAAAGGGCAGAAACAA+GGG | 0.664007 | 4_2:-50252739 | Msa0604610:CDS |
| GCAGGGCAATGATTATGATG+AGG | 0.664420 | 4_2:-50252710 | Msa0604610:CDS |
| ACAAGCGCGAAAAGATTGTG+AGG | 0.665448 | 4_2:-50252758 | Msa0604610:CDS |
| GTGACTCAAGATTCTTCTGG+AGG | 0.668755 | 4_2:-50253008 | Msa0604610:CDS |
| TGTGGGTCAGGAGTTCGAGT+CGG | 0.681569 | 4_2:-50252925 | Msa0604610:CDS |
| TGTAGCTGGTAGCATACCTG+AGG | 0.687245 | 4_2:-50253087 | Msa0604610:CDS |
| GCGTATGATGAATCCAACCT+CGG | 0.694329 | 4_2:+50252866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATTTTTTACTATTC+AGG | - | chr4_2:50251656-50251675 | Msa0604610:three_prime_UTR | 10.0% |
| !!! | ACAAATTATTAGATACTTTT+CGG | + | chr4_2:50251522-50251541 | None:intergenic | 15.0% |
| !! | ATGACAATTATATATTAAGT+AGG | + | chr4_2:50251603-50251622 | None:intergenic | 15.0% |
| !! | GTATAATTTATACAATTCTT+CGG | + | chr4_2:50252565-50252584 | None:intergenic | 15.0% |
| !! | AAACGAAAATTAAAAATGAA+TGG | + | chr4_2:50252807-50252826 | None:intergenic | 15.0% |
| !! | TAAAAATCTAGATAATTGAA+AGG | + | chr4_2:50253376-50253395 | None:intergenic | 15.0% |
| !! | TTAGTATTAATATGATACAA+TGG | - | chr4_2:50253489-50253508 | Msa0604610:intron | 15.0% |
| !!! | CAAATTATTAGATACTTTTC+GGG | + | chr4_2:50251521-50251540 | None:intergenic | 20.0% |
| !! | GAAAATTAATTCTGGTAAAT+GGG | - | chr4_2:50252435-50252454 | Msa0604610:intron | 20.0% |
| !! | AAAGTAACAATGAAAATCAA+CGG | + | chr4_2:50252626-50252645 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTTAGGATAATAT+TGG | - | chr4_2:50252712-50252731 | Msa0604610:CDS | 20.0% |
| !!! | AATGGATGAAGTATTATATA+AGG | + | chr4_2:50252789-50252808 | None:intergenic | 20.0% |
| !!! | TAAGTAGTTAAAGGTATTAT+AGG | - | chr4_2:50252948-50252967 | Msa0604610:CDS | 20.0% |
| !!! | TTCTTGTTATGTAGTTATAT+TGG | - | chr4_2:50252982-50253001 | Msa0604610:CDS | 20.0% |
| !!! | CAACTTAGAAATTACTTTTA+CGG | - | chr4_2:50253034-50253053 | Msa0604610:CDS | 20.0% |
| ! | GTAACGAAACACAATTAAAA+TGG | + | chr4_2:50251775-50251794 | None:intergenic | 25.0% |
| !! | ATATGTTTGTTAACGTATCT+TGG | - | chr4_2:50251800-50251819 | Msa0604610:CDS | 25.0% |
| ! | ATGATGAGGAAAATTAATTC+TGG | - | chr4_2:50252427-50252446 | Msa0604610:intron | 25.0% |
| ! | GGAAAATTAATTCTGGTAAA+TGG | - | chr4_2:50252434-50252453 | Msa0604610:intron | 25.0% |
| !! | GGATATGTTTGAAATTTATC+CGG | - | chr4_2:50252516-50252535 | Msa0604610:intron | 25.0% |
| ! | GATTCTCGTATATATTGTAA+TGG | - | chr4_2:50252594-50252613 | Msa0604610:intron | 25.0% |
| !! | GAATGAATGGTATTAGTTTA+AGG | - | chr4_2:50252662-50252681 | Msa0604610:CDS | 25.0% |
| !! | CTAAAAACTTCATTCTGAAA+TGG | + | chr4_2:50252704-50252723 | None:intergenic | 25.0% |
| !! | CATTTCAGAATGAAGTTTTT+AGG | - | chr4_2:50252702-50252721 | Msa0604610:CDS | 25.0% |
| ! | ATGAGATGATAAGTAGTTAA+AGG | - | chr4_2:50252939-50252958 | Msa0604610:CDS | 25.0% |
| ! | AGTGATATTTGATTATATCG+AGG | - | chr4_2:50253250-50253269 | Msa0604610:intron | 25.0% |
| ! | TTATGTTCTTCTTCTTCTTT+AGG | + | chr4_2:50253338-50253357 | None:intergenic | 25.0% |
| ! | AGAAGAACATAATCATTGAT+AGG | - | chr4_2:50253346-50253365 | Msa0604610:intron | 25.0% |
| !! | CTATTTTCAATCGAATGTAT+AGG | - | chr4_2:50253567-50253586 | Msa0604610:intron | 25.0% |
| ! | CAATTGTGATAACTCATAAA+AGG | - | chr4_2:50253624-50253643 | Msa0604610:intron | 25.0% |
| ! | AAAGCTTTGATACTCCAAAT+TGG | - | chr4_2:50251461-50251480 | Msa0604610:three_prime_UTR | 30.0% |
| ATACTCCAAATTGGAAAGTA+TGG | - | chr4_2:50251470-50251489 | Msa0604610:three_prime_UTR | 30.0% | |
| GATATCCATACTTTCCAATT+TGG | + | chr4_2:50251478-50251497 | None:intergenic | 30.0% | |
| ATTGAAGATGCATATTGCAT+CGG | + | chr4_2:50251572-50251591 | None:intergenic | 30.0% | |
| AATGATATGTCGTATCTGAA+TGG | + | chr4_2:50251724-50251743 | None:intergenic | 30.0% | |
| ACATAGAACGATACAGATAT+AGG | + | chr4_2:50251859-50251878 | None:intergenic | 30.0% | |
| ! | CTATAAGATTTTCAGTGTTC+AGG | + | chr4_2:50251938-50251957 | None:intergenic | 30.0% |
| GGTTATTACGAAGTTTGTAA+AGG | - | chr4_2:50252456-50252475 | Msa0604610:intron | 30.0% | |
| CTTGATAGATTGAGAATGAA+TGG | - | chr4_2:50252649-50252668 | Msa0604610:CDS | 30.0% | |
| AGTTAATTCTGCATTGAACT+TGG | + | chr4_2:50252864-50252883 | None:intergenic | 30.0% | |
| TTTATCGCAGAGAGATAAAT+AGG | - | chr4_2:50252912-50252931 | Msa0604610:CDS | 30.0% | |
| TTAAAAAATGCTCCAAGATG+AGG | - | chr4_2:50253424-50253443 | Msa0604610:intron | 30.0% | |
| TATCTAATAACTGCTGACAT+AGG | - | chr4_2:50253457-50253476 | Msa0604610:intron | 30.0% | |
| CTTCATATGAATAGACTCAA+AGG | + | chr4_2:50253594-50253613 | None:intergenic | 30.0% | |
| TGAGTCTATTCATATGAAGT+TGG | - | chr4_2:50253595-50253614 | Msa0604610:intron | 30.0% | |
| !! | ATACTTTTCGGGAATGTATC+GGG | + | chr4_2:50251510-50251529 | None:intergenic | 35.0% |
| !! | GATACTTTTCGGGAATGTAT+CGG | + | chr4_2:50251511-50251530 | None:intergenic | 35.0% |
| TTGTTAACGTATCTTGGTCA+TGG | - | chr4_2:50251806-50251825 | Msa0604610:CDS | 35.0% | |
| TGTTAACGTATCTTGGTCAT+GGG | - | chr4_2:50251807-50251826 | Msa0604610:CDS | 35.0% | |
| TCTGTATCGTTCTATGTATC+TGG | - | chr4_2:50251862-50251881 | Msa0604610:CDS | 35.0% | |
| CTGTATCGTTCTATGTATCT+GGG | - | chr4_2:50251863-50251882 | Msa0604610:CDS | 35.0% | |
| ! | GAGATTGATGACTCTGTTAA+TGG | - | chr4_2:50251986-50252005 | Msa0604610:intron | 35.0% |
| TCTTCTTCTATGTATTCCTC+AGG | + | chr4_2:50252055-50252074 | None:intergenic | 35.0% | |
| !! | TCTTGGTCTTGTTTGTAAGA+TGG | + | chr4_2:50252088-50252107 | None:intergenic | 35.0% |
| ATATCCTTTCTACTACTTCC+AGG | + | chr4_2:50252502-50252521 | None:intergenic | 35.0% | |
| AGAAACAAACGAGGTAAGTA+GGG | + | chr4_2:50253134-50253153 | None:intergenic | 35.0% | |
| TAGAAACAAACGAGGTAAGT+AGG | + | chr4_2:50253135-50253154 | None:intergenic | 35.0% | |
| ! | TTATATCGAGGAGCATAATG+TGG | - | chr4_2:50253262-50253281 | Msa0604610:intron | 35.0% |
| ! | TATATCGAGGAGCATAATGT+GGG | - | chr4_2:50253263-50253282 | Msa0604610:intron | 35.0% |
| TATTATTGCACACCTCATCT+TGG | + | chr4_2:50253439-50253458 | None:intergenic | 35.0% | |
| GGAATAATTAAGCGCTATCA+AGG | + | chr4_2:50253660-50253679 | None:intergenic | 35.0% | |
| ATTCAGGTACGACATGTCAT+TGG | - | chr4_2:50251672-50251691 | Msa0604610:three_prime_UTR | 40.0% | |
| TCTATGTATCTGGGCTTCTT+AGG | - | chr4_2:50251872-50251891 | Msa0604610:CDS | 40.0% | |
| !!! | CAGATCTTTTGTTGTTGCAG+TGG | - | chr4_2:50251958-50251977 | Msa0604610:CDS | 40.0% |
| AATGGCGATACAGTAAGAGA+TGG | - | chr4_2:50252004-50252023 | Msa0604610:intron | 40.0% | |
| CTTGAGTCACGTTATCATCT+TGG | + | chr4_2:50252105-50252124 | None:intergenic | 40.0% | |
| AACGTGACTCAAGATTCTTC+TGG | - | chr4_2:50252112-50252131 | Msa0604610:intron | 40.0% | |
| ! | GCTCTTGTTTGCAACAAAGA+GGG | - | chr4_2:50252328-50252347 | Msa0604610:intron | 40.0% |
| CGAAAAGATTGTGAGGCAAA+GGG | - | chr4_2:50252372-50252391 | Msa0604610:intron | 40.0% | |
| CTACTACTTCCAGGATTCAA+GGG | + | chr4_2:50252493-50252512 | None:intergenic | 40.0% | |
| TCTACTACTTCCAGGATTCA+AGG | + | chr4_2:50252494-50252513 | None:intergenic | 40.0% | |
| GAATCCTGGAAGTAGTAGAA+AGG | - | chr4_2:50252495-50252514 | Msa0604610:intron | 40.0% | |
| ! | GAAAAAGCATAGGAACTGAC+CGG | + | chr4_2:50252538-50252557 | None:intergenic | 40.0% |
| ! | CTTCGGTAGTGAAAAAGCAT+AGG | + | chr4_2:50252548-50252567 | None:intergenic | 40.0% |
| TTTCTCTCGTGGAAAGGATA+AGG | + | chr4_2:50253011-50253030 | None:intergenic | 40.0% | |
| TTGCAATTTCTCTCGTGGAA+AGG | + | chr4_2:50253017-50253036 | None:intergenic | 40.0% | |
| CTAAGTTGCAATTTCTCTCG+TGG | + | chr4_2:50253022-50253041 | None:intergenic | 40.0% | |
| AAACAAACGAGGTAAGTAGG+GGG | + | chr4_2:50253132-50253151 | None:intergenic | 40.0% | |
| GAAACAAACGAGGTAAGTAG+GGG | + | chr4_2:50253133-50253152 | None:intergenic | 40.0% | |
| GACTGACATAGAAACAAACG+AGG | + | chr4_2:50253143-50253162 | None:intergenic | 40.0% | |
| TAACGTATCTTGGTCATGGG+CGG | - | chr4_2:50251810-50251829 | Msa0604610:CDS | 45.0% | |
| ! | TACAGTAAGAGATGGTGCCA+TGG | - | chr4_2:50252012-50252031 | Msa0604610:intron | 45.0% |
| TATGCTACCAGCTACAACCA+TGG | + | chr4_2:50252032-50252051 | None:intergenic | 45.0% | |
| GTGACTCAAGATTCTTCTGG+AGG | - | chr4_2:50252115-50252134 | Msa0604610:intron | 45.0% | |
| GCGTATGATGAATCCAACCT+CGG | + | chr4_2:50252260-50252279 | None:intergenic | 45.0% | |
| TAAGCAAGCTCTCACGATCA+AGG | - | chr4_2:50252281-50252300 | Msa0604610:intron | 45.0% | |
| CTCTCACGATCAAGGAAAGA+CGG | - | chr4_2:50252289-50252308 | Msa0604610:intron | 45.0% | |
| AGGAAAGACGGAACTGCTAT+TGG | - | chr4_2:50252301-50252320 | Msa0604610:intron | 45.0% | |
| AAGACGGAACTGCTATTGGA+CGG | - | chr4_2:50252305-50252324 | Msa0604610:intron | 45.0% | |
| ! | GGCTCTTGTTTGCAACAAAG+AGG | - | chr4_2:50252327-50252346 | Msa0604610:intron | 45.0% |
| ! | ACAATCTTTTCGCGCTTGTC+AGG | + | chr4_2:50252364-50252383 | None:intergenic | 45.0% |
| ACAAGCGCGAAAAGATTGTG+AGG | - | chr4_2:50252365-50252384 | Msa0604610:intron | 45.0% | |
| GCGAAAAGATTGTGAGGCAA+AGG | - | chr4_2:50252371-50252390 | Msa0604610:intron | 45.0% | |
| !! | AGAAACAAGGGTTGGTTGCA+GGG | - | chr4_2:50252396-50252415 | Msa0604610:intron | 45.0% |
| GCAGGGCAATGATTATGATG+AGG | - | chr4_2:50252413-50252432 | Msa0604610:intron | 45.0% | |
| AGCATAATGTGGGTCTCTCA+AGG | - | chr4_2:50253273-50253292 | Msa0604610:intron | 45.0% | |
| GCGTATAGTAGACAGTGTGA+AGG | - | chr4_2:50253304-50253323 | Msa0604610:intron | 45.0% | |
| AGTAGACAGTGTGAAGGAGA+TGG | - | chr4_2:50253310-50253329 | Msa0604610:intron | 45.0% | |
| TGTAGCTGGTAGCATACCTG+AGG | - | chr4_2:50252036-50252055 | Msa0604610:intron | 50.0% | |
| TCGAACTCCTGACCCACATA+GGG | + | chr4_2:50252196-50252215 | None:intergenic | 50.0% | |
| TTACAATGCATACGCAGCCG+AGG | - | chr4_2:50252240-50252259 | Msa0604610:intron | 50.0% | |
| AGACGGAACTGCTATTGGAC+GGG | - | chr4_2:50252306-50252325 | Msa0604610:intron | 50.0% | |
| TGAGGCAAAGGGCAGAAACA+AGG | - | chr4_2:50252383-50252402 | Msa0604610:intron | 50.0% | |
| GAGGCAAAGGGCAGAAACAA+GGG | - | chr4_2:50252384-50252403 | Msa0604610:intron | 50.0% | |
| CAAAGGGCAGAAACAAGGGT+TGG | - | chr4_2:50252388-50252407 | Msa0604610:intron | 50.0% | |
| !! | CAGAAACAAGGGTTGGTTGC+AGG | - | chr4_2:50252395-50252414 | Msa0604610:intron | 50.0% |
| CACACACATCCCTTGAATCC+TGG | - | chr4_2:50252481-50252500 | Msa0604610:intron | 50.0% | |
| CTCTCGTGGAAAGGATAAGG+TGG | + | chr4_2:50253008-50253027 | None:intergenic | 50.0% | |
| CCAACTGCTGAGATAGTTCG+CGG | + | chr4_2:50253187-50253206 | None:intergenic | 50.0% | |
| !! | GATGGTGCCATGGTTGTAGC+TGG | - | chr4_2:50252022-50252041 | Msa0604610:intron | 55.0% |
| ! | TGGTAGTGTGGGAACTGCAG+CGG | + | chr4_2:50252155-50252174 | None:intergenic | 55.0% |
| !! | GCAGAAGCGTCTGGTAGTGT+GGG | + | chr4_2:50252166-50252185 | None:intergenic | 55.0% |
| !! | AGCAGAAGCGTCTGGTAGTG+TGG | + | chr4_2:50252167-50252186 | None:intergenic | 55.0% |
| ACTACCAGACGCTTCTGCTG+AGG | - | chr4_2:50252168-50252187 | Msa0604610:intron | 55.0% | |
| TTCTGCTGAGGAGCCCTATG+TGG | - | chr4_2:50252180-50252199 | Msa0604610:intron | 55.0% | |
| TCTGCTGAGGAGCCCTATGT+GGG | - | chr4_2:50252181-50252200 | Msa0604610:intron | 55.0% | |
| CTCGAACTCCTGACCCACAT+AGG | + | chr4_2:50252197-50252216 | None:intergenic | 55.0% | |
| TGTGGGTCAGGAGTTCGAGT+CGG | - | chr4_2:50252198-50252217 | Msa0604610:intron | 55.0% | |
| AATGCATACGCAGCCGAGGT+TGG | - | chr4_2:50252244-50252263 | Msa0604610:intron | 55.0% | |
| CCGCGAACTATCTCAGCAGT+TGG | - | chr4_2:50253184-50253203 | Msa0604610:intron | 55.0% | |
| GGTAGTGTGGGAACTGCAGC+GGG | + | chr4_2:50252154-50252173 | None:intergenic | 60.0% | |
| TGAGGAGCCCTATGTGGGTC+AGG | - | chr4_2:50252186-50252205 | Msa0604610:intron | 60.0% | |
| !! | GGCTCCTCAGCAGAAGCGTC+TGG | + | chr4_2:50252175-50252194 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 50251452 | 50253693 | 50251452 | ID=Msa0604610;Name=Msa0604610 |
| chr4_2 | mRNA | 50251452 | 50253693 | 50251452 | ID=Msa0604610-mRNA-1;Parent=Msa0604610;Name=Msa0604610-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.5|0.66|0.66|1|1|3|329|271 |
| chr4_2 | exon | 50251452 | 50251984 | 50251452 | ID=Msa0604610-mRNA-1:exon:11843;Parent=Msa0604610-mRNA-1 |
| chr4_2 | exon | 50252608 | 50253167 | 50252608 | ID=Msa0604610-mRNA-1:exon:11842;Parent=Msa0604610-mRNA-1 |
| chr4_2 | exon | 50253642 | 50253693 | 50253642 | ID=Msa0604610-mRNA-1:exon:11841;Parent=Msa0604610-mRNA-1 |
| chr4_2 | CDS | 50253642 | 50253693 | 50253642 | ID=Msa0604610-mRNA-1:cds;Parent=Msa0604610-mRNA-1 |
| chr4_2 | CDS | 50252608 | 50253167 | 50252608 | ID=Msa0604610-mRNA-1:cds;Parent=Msa0604610-mRNA-1 |
| chr4_2 | CDS | 50251781 | 50251984 | 50251781 | ID=Msa0604610-mRNA-1:cds;Parent=Msa0604610-mRNA-1 |
| chr4_2 | three_prime_UTR | 50251452 | 50251780 | 50251452 | ID=Msa0604610-mRNA-1:three_prime_utr;Parent=Msa0604610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
