Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578280 | KEH30332.1 | 92.248 | 258 | 12 | 3 | 63 | 312 | 40 | 297 | 7.08e-160 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578280 | sp|Q9SZL8|FRS5_ARATH | 53.704 | 108 | 39 | 4 | 137 | 233 | 72 | 179 | 1.93e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578280 | A0A072UKW2 | 92.248 | 258 | 12 | 3 | 63 | 312 | 40 | 297 | 3.38e-160 | 457 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0578280 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0578260 | Msa0578280 | 0.941300 | 5.280587e-101 | -8.615850e-47 |
| Msa0578280 | Msa0604610 | 0.945639 | 2.093168e-104 | -8.615850e-47 |
| Msa0578280 | Msa1079730 | -0.814549 | 1.455931e-51 | -8.615850e-47 |
| Msa0578280 | Msa1168040 | -0.811754 | 5.976635e-51 | -8.615850e-47 |
| Msa0578280 | Msa1452170 | 0.926297 | 5.693230e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578280 | MtrunA17_Chr4g0033611 | 92.941 | 255 | 10 | 3 | 66 | 312 | 3 | 257 | 1.50e-163 | 455 |
| Msa0578280 | MtrunA17_Chr2g0329421 | 67.961 | 206 | 54 | 6 | 112 | 308 | 1 | 203 | 3.85e-91 | 270 |
| Msa0578280 | MtrunA17_Chr3g0078041 | 41.579 | 190 | 94 | 5 | 132 | 310 | 44 | 227 | 4.72e-36 | 129 |
| Msa0578280 | MtrunA17_Chr2g0329361 | 34.872 | 195 | 102 | 8 | 130 | 303 | 53 | 243 | 4.21e-26 | 103 |
| Msa0578280 | MtrunA17_Chr7g0233911 | 34.409 | 186 | 102 | 6 | 130 | 303 | 26 | 203 | 8.31e-25 | 99.8 |
| Msa0578280 | MtrunA17_Chr5g0448761 | 49.138 | 116 | 50 | 4 | 127 | 233 | 52 | 167 | 2.97e-17 | 82.4 |
| Msa0578280 | MtrunA17_Chr3g0082121 | 46.078 | 102 | 45 | 4 | 140 | 233 | 48 | 147 | 8.93e-17 | 80.9 |
| Msa0578280 | MtrunA17_Chr1g0203721 | 31.707 | 164 | 90 | 6 | 95 | 249 | 30 | 180 | 1.30e-16 | 80.5 |
| Msa0578280 | MtrunA17_Chr5g0401121 | 43.564 | 101 | 51 | 3 | 140 | 234 | 61 | 161 | 3.60e-16 | 74.7 |
| Msa0578280 | MtrunA17_Chr6g0458391 | 39.000 | 100 | 56 | 2 | 141 | 235 | 231 | 330 | 1.81e-15 | 77.0 |
| Msa0578280 | MtrunA17_Chr2g0287061 | 39.450 | 109 | 47 | 3 | 137 | 238 | 182 | 278 | 3.21e-15 | 76.3 |
| Msa0578280 | MtrunA17_Chr1g0202341 | 33.813 | 139 | 75 | 5 | 111 | 237 | 27 | 160 | 4.71e-14 | 72.8 |
| Msa0578280 | MtrunA17_Chr2g0291591 | 36.190 | 105 | 60 | 2 | 133 | 233 | 62 | 163 | 1.85e-12 | 67.8 |
| Msa0578280 | MtrunA17_Chr2g0291581 | 34.109 | 129 | 76 | 3 | 140 | 263 | 76 | 200 | 9.60e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578280 | AT3G59470.2 | 51.894 | 264 | 107 | 7 | 66 | 312 | 1 | 261 | 1.79e-84 | 255 |
| Msa0578280 | AT3G59470.3 | 59.813 | 214 | 69 | 6 | 107 | 312 | 45 | 249 | 5.20e-84 | 254 |
| Msa0578280 | AT3G59470.1 | 59.813 | 214 | 69 | 6 | 107 | 312 | 45 | 249 | 5.20e-84 | 254 |
| Msa0578280 | AT3G07500.1 | 41.243 | 177 | 94 | 5 | 137 | 303 | 32 | 208 | 1.69e-35 | 128 |
| Msa0578280 | AT2G43280.1 | 36.667 | 210 | 102 | 7 | 106 | 303 | 2 | 192 | 8.95e-31 | 115 |
| Msa0578280 | AT2G43280.2 | 37.349 | 166 | 88 | 5 | 150 | 306 | 2 | 160 | 1.82e-25 | 100 |
| Msa0578280 | AT4G12850.1 | 34.444 | 180 | 103 | 5 | 132 | 303 | 5 | 177 | 2.89e-24 | 97.8 |
| Msa0578280 | AT4G38180.1 | 53.704 | 108 | 39 | 4 | 137 | 233 | 72 | 179 | 1.96e-19 | 89.4 |
| Msa0578280 | AT4G12850.2 | 38.211 | 123 | 66 | 4 | 132 | 246 | 5 | 125 | 4.58e-17 | 77.0 |
| Msa0578280 | AT5G18960.2 | 34.507 | 142 | 60 | 4 | 98 | 232 | 17 | 132 | 9.90e-17 | 81.3 |
| Msa0578280 | AT5G18960.2 | 37.963 | 108 | 48 | 3 | 134 | 234 | 207 | 302 | 6.30e-15 | 75.9 |
| Msa0578280 | AT5G18960.1 | 34.507 | 142 | 60 | 4 | 98 | 232 | 17 | 132 | 9.90e-17 | 81.3 |
| Msa0578280 | AT5G18960.1 | 37.963 | 108 | 48 | 3 | 134 | 234 | 207 | 302 | 6.30e-15 | 75.9 |
| Msa0578280 | AT3G06250.2 | 38.793 | 116 | 52 | 3 | 135 | 243 | 187 | 290 | 4.10e-16 | 79.3 |
| Msa0578280 | AT3G06250.2 | 37.736 | 106 | 47 | 3 | 134 | 232 | 24 | 117 | 1.40e-14 | 74.7 |
| Msa0578280 | AT3G06250.1 | 38.793 | 116 | 52 | 3 | 135 | 243 | 187 | 290 | 4.10e-16 | 79.3 |
| Msa0578280 | AT3G06250.1 | 37.736 | 106 | 47 | 3 | 134 | 232 | 24 | 117 | 1.40e-14 | 74.7 |
| Msa0578280 | AT3G06250.3 | 38.793 | 116 | 52 | 3 | 135 | 243 | 187 | 290 | 4.10e-16 | 79.3 |
| Msa0578280 | AT3G06250.3 | 37.736 | 106 | 47 | 3 | 134 | 232 | 24 | 117 | 1.40e-14 | 74.7 |
| Msa0578280 | AT4G12850.4 | 38.318 | 107 | 57 | 3 | 132 | 231 | 5 | 109 | 6.09e-16 | 73.9 |
| Msa0578280 | AT1G52520.1 | 40.625 | 96 | 50 | 2 | 140 | 231 | 90 | 182 | 1.97e-13 | 71.2 |
| Msa0578280 | AT1G80010.1 | 38.776 | 98 | 53 | 2 | 140 | 233 | 100 | 194 | 3.52e-13 | 70.5 |
| Msa0578280 | AT2G32250.5 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.33e-11 | 63.5 |
| Msa0578280 | AT2G32250.6 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.33e-11 | 63.5 |
| Msa0578280 | AT2G32250.1 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.33e-11 | 63.5 |
| Msa0578280 | AT2G32250.3 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.33e-11 | 63.5 |
| Msa0578280 | AT2G32250.2 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.50e-11 | 63.5 |
| Msa0578280 | AT2G32250.4 | 37.000 | 100 | 53 | 3 | 140 | 233 | 43 | 138 | 6.50e-11 | 63.5 |
| Msa0578280 | AT2G32250.8 | 37.000 | 100 | 53 | 3 | 140 | 233 | 2 | 97 | 6.87e-11 | 63.5 |
| Msa0578280 | AT2G32250.7 | 37.000 | 100 | 53 | 3 | 140 | 233 | 2 | 97 | 7.01e-11 | 63.5 |
| Msa0578280 | AT4G19990.7 | 27.891 | 147 | 74 | 3 | 136 | 264 | 36 | 168 | 7.81e-11 | 63.5 |
| Msa0578280 | AT4G19990.3 | 27.891 | 147 | 74 | 3 | 136 | 264 | 22 | 154 | 8.12e-11 | 63.2 |
| Msa0578280 | AT4G19990.4 | 27.891 | 147 | 74 | 3 | 136 | 264 | 22 | 154 | 8.12e-11 | 63.2 |
| Msa0578280 | AT4G19990.6 | 27.891 | 147 | 74 | 3 | 136 | 264 | 22 | 154 | 8.20e-11 | 63.2 |
| Msa0578280 | AT4G19990.2 | 27.891 | 147 | 74 | 3 | 136 | 264 | 22 | 154 | 8.20e-11 | 63.2 |
| Msa0578280 | AT4G19990.5 | 27.891 | 147 | 74 | 3 | 136 | 264 | 22 | 154 | 8.49e-11 | 63.2 |
Find 80 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATTAATTCTGGTAAA+TGG | 0.122359 | 4_1:+82836521 | Msa0578280:CDS |
| GAGATTGATGACTCTGTTAA+TGG | 0.238281 | 4_1:+82836073 | Msa0578280:CDS |
| CAGAAACAAGGGTTGGTTGC+AGG | 0.300475 | 4_1:+82836482 | Msa0578280:CDS |
| TTATGTTCTTCTTCTTCTTT+AGG | 0.309765 | 4_1:-82837422 | None:intergenic |
| TTTGTGTTGTTGTGTTGTTC+TGG | 0.328872 | 4_1:+82833329 | Msa0578280:CDS |
| CAATTGTGATAACTCATAAA+AGG | 0.333301 | 4_1:+82837711 | Msa0578280:three_prime_UTR |
| GAAAATTAATTCTGGTAAAT+GGG | 0.333770 | 4_1:+82836522 | Msa0578280:CDS |
| ATGATGAGGAAAATTAATTC+TGG | 0.337234 | 4_1:+82836514 | Msa0578280:CDS |
| ATATCCTTTCTACTACTTCC+AGG | 0.355137 | 4_1:-82836586 | None:intergenic |
| TTCTGGTGCACCACCCGTAT+TGG | 0.367058 | 4_1:+82833346 | Msa0578280:CDS |
| AGGAAAGACGGAACTGCTAT+TGG | 0.388968 | 4_1:+82836388 | Msa0578280:CDS |
| AACGTGACTCAAGATTCTTC+TGG | 0.391633 | 4_1:+82836199 | Msa0578280:CDS |
| CTTGAGTCACGTTATCATCT+TGG | 0.395456 | 4_1:-82836189 | None:intergenic |
| TCTTGGTCTTGTTTGTAAGA+TGG | 0.422563 | 4_1:-82836172 | None:intergenic |
| TCTACTACTTCCAGGATTCA+AGG | 0.432111 | 4_1:-82836578 | None:intergenic |
| TATTATTGCACACCTCATCT+TGG | 0.432815 | 4_1:-82837523 | None:intergenic |
| AGAAGAACATAATCATTGAT+AGG | 0.432866 | 4_1:+82837433 | Msa0578280:exon |
| GGATATGTTTGAAATTTATC+CGG | 0.433360 | 4_1:+82836603 | Msa0578280:CDS |
| TCTTCTTCTATGTATTCCTC+AGG | 0.455153 | 4_1:-82836139 | None:intergenic |
| GAGAGGAATGAGAAAGAACC+TGG | 0.455694 | 4_1:+82833171 | None:intergenic |
| GGAATAATTAAGCGCTATCA+AGG | 0.466188 | 4_1:-82837744 | None:intergenic |
| GTGCACCACCCGTATTGGAT+CGG | 0.467952 | 4_1:+82833351 | Msa0578280:CDS |
| TAAGCAAGCTCTCACGATCA+AGG | 0.471737 | 4_1:+82836368 | Msa0578280:CDS |
| CACACACATCCCTTGAATCC+TGG | 0.472295 | 4_1:+82836568 | Msa0578280:CDS |
| TGAGTCTATTCATATGAAGT+TGG | 0.472796 | 4_1:+82837682 | Msa0578280:three_prime_UTR |
| TGCACCACCCGTATTGGATC+GGG | 0.475428 | 4_1:+82833352 | Msa0578280:CDS |
| GGCTCCTCAGCAGAAGCGTC+TGG | 0.483303 | 4_1:-82836259 | None:intergenic |
| CCAACTGCTGAGATAGTTCG+CGG | 0.495662 | 4_1:-82837271 | None:intergenic |
| AGTAGACAGTGTGAAGGAGA+TGG | 0.496746 | 4_1:+82837397 | Msa0578280:CDS |
| CTACTACTTCCAGGATTCAA+GGG | 0.508347 | 4_1:-82836577 | None:intergenic |
| AGAAACAAGGGTTGGTTGCA+GGG | 0.508414 | 4_1:+82836483 | Msa0578280:CDS |
| AAATGTTGCAAAATCAGCTA+TGG | 0.513100 | 4_1:-82837765 | None:intergenic |
| ATAACCCACCCGATCCAATA+CGG | 0.514589 | 4_1:-82833360 | None:intergenic |
| GGTAGTGTGGGAACTGCAGC+GGG | 0.515950 | 4_1:-82836238 | None:intergenic |
| GGTTATTACGAAGTTTGTAA+AGG | 0.521568 | 4_1:+82836543 | Msa0578280:intron |
| AGCAGAAGCGTCTGGTAGTG+TGG | 0.524624 | 4_1:-82836251 | None:intergenic |
| AATGCATACGCAGCCGAGGT+TGG | 0.541461 | 4_1:+82836331 | Msa0578280:CDS |
| CGAAAAGATTGTGAGGCAAA+GGG | 0.544339 | 4_1:+82836459 | Msa0578280:CDS |
| GCGAAAAGATTGTGAGGCAA+AGG | 0.552809 | 4_1:+82836458 | Msa0578280:CDS |
| AGCATAATGTGGGTCTCTCA+AGG | 0.559262 | 4_1:+82837360 | Msa0578280:CDS |
| GGCTCTTGTTTGCAACAAAG+AGG | 0.560233 | 4_1:+82836414 | Msa0578280:CDS |
| TATCTAATAACTGCTGACAT+AGG | 0.563093 | 4_1:+82837544 | Msa0578280:three_prime_UTR |
| TGGTAGTGTGGGAACTGCAG+CGG | 0.563388 | 4_1:-82836239 | None:intergenic |
| TAACCCACCCGATCCAATAC+GGG | 0.566710 | 4_1:-82833359 | None:intergenic |
| GAATCCTGGAAGTAGTAGAA+AGG | 0.569556 | 4_1:+82836582 | Msa0578280:CDS |
| GATGGTGCCATGGTTGTAGC+TGG | 0.569629 | 4_1:+82836109 | Msa0578280:CDS |
| CCGCGAACTATCTCAGCAGT+TGG | 0.570583 | 4_1:+82837271 | Msa0578280:CDS |
| GCTCTTGTTTGCAACAAAGA+GGG | 0.580043 | 4_1:+82836415 | Msa0578280:CDS |
| TGATTTGAATTTGAATGCAG+TGG | 0.581058 | 4_1:+82833228 | Msa0578280:CDS |
| TGAGGCAAAGGGCAGAAACA+AGG | 0.583136 | 4_1:+82836470 | Msa0578280:CDS |
| GCAGAAGCGTCTGGTAGTGT+GGG | 0.584434 | 4_1:-82836250 | None:intergenic |
| AGACGGAACTGCTATTGGAC+GGG | 0.589838 | 4_1:+82836393 | Msa0578280:CDS |
| CTCTCACGATCAAGGAAAGA+CGG | 0.590017 | 4_1:+82836376 | Msa0578280:CDS |
| TTAGTATTAATATGATACAA+TGG | 0.596314 | 4_1:+82837576 | Msa0578280:three_prime_UTR |
| AAGACGGAACTGCTATTGGA+CGG | 0.612304 | 4_1:+82836392 | Msa0578280:CDS |
| CTTCATATGAATAGACTCAA+AGG | 0.619140 | 4_1:-82837678 | None:intergenic |
| GCGGAACAACGTAGTTGCCA+TGG | 0.621409 | 4_1:+82833267 | Msa0578280:CDS |
| AGTGATATTTGATTATATCG+AGG | 0.622955 | 4_1:+82837337 | Msa0578280:CDS |
| GAATGAGAAAGAACCTGGGA+GGG | 0.627384 | 4_1:+82833176 | None:intergenic |
| CAAAGGGCAGAAACAAGGGT+TGG | 0.628129 | 4_1:+82836475 | Msa0578280:CDS |
| TTACAATGCATACGCAGCCG+AGG | 0.629238 | 4_1:+82836327 | Msa0578280:CDS |
| TATGCTACCAGCTACAACCA+TGG | 0.631572 | 4_1:-82836116 | None:intergenic |
| GCGTATAGTAGACAGTGTGA+AGG | 0.633138 | 4_1:+82837391 | Msa0578280:CDS |
| AGAGGAATGAGAAAGAACCT+GGG | 0.634230 | 4_1:+82833172 | None:intergenic |
| TACAGTAAGAGATGGTGCCA+TGG | 0.635293 | 4_1:+82836099 | Msa0578280:CDS |
| TTATATCGAGGAGCATAATG+TGG | 0.635828 | 4_1:+82837349 | Msa0578280:CDS |
| TATATCGAGGAGCATAATGT+GGG | 0.635920 | 4_1:+82837350 | Msa0578280:CDS |
| AATGGCGATACAGTAAGAGA+TGG | 0.645018 | 4_1:+82836091 | Msa0578280:CDS |
| ACTACCAGACGCTTCTGCTG+AGG | 0.646967 | 4_1:+82836255 | Msa0578280:CDS |
| CCTGGGAGGGACCGAAAACG+AGG | 0.651767 | 4_1:+82833189 | Msa0578280:CDS |
| GAGGCAAAGGGCAGAAACAA+GGG | 0.664007 | 4_1:+82836471 | Msa0578280:CDS |
| GCAGGGCAATGATTATGATG+AGG | 0.664420 | 4_1:+82836500 | Msa0578280:CDS |
| ACAAGCGCGAAAAGATTGTG+AGG | 0.665448 | 4_1:+82836452 | Msa0578280:CDS |
| GTGACTCAAGATTCTTCTGG+AGG | 0.668755 | 4_1:+82836202 | Msa0578280:CDS |
| CCCACCCGATCCAATACGGG+TGG | 0.671983 | 4_1:-82833356 | None:intergenic |
| TGTGGGTCAGGAGTTCGAGT+CGG | 0.681569 | 4_1:+82836285 | Msa0578280:intron |
| TGTAGCTGGTAGCATACCTG+AGG | 0.687245 | 4_1:+82836123 | Msa0578280:CDS |
| GGAATGAGAAAGAACCTGGG+AGG | 0.689526 | 4_1:+82833175 | None:intergenic |
| TGGAAGCTCTACGAATAGTG+CGG | 0.692763 | 4_1:+82833248 | Msa0578280:CDS |
| GCGTATGATGAATCCAACCT+CGG | 0.694329 | 4_1:-82836344 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATTGTTTTAAATTT+TGG | + | chr4_1:82834172-82834191 | Msa0578280:intron | 10.0% |
| !! | ATAAAAATCAATAATATCTT+TGG | - | chr4_1:82834212-82834231 | None:intergenic | 10.0% |
| !!! | AAAAAAATTCAGAATTTTAT+AGG | - | chr4_1:82835235-82835254 | None:intergenic | 10.0% |
| !!! | TAAAATTCTGAATTTTTTTT+TGG | + | chr4_1:82835236-82835255 | Msa0578280:intron | 10.0% |
| !!! | AATATAATTTTTTACTATTC+AGG | + | chr4_1:82835743-82835762 | Msa0578280:intron | 10.0% |
| !! | TTTCTACAATTAAATTCAAA+GGG | + | chr4_1:82833775-82833794 | Msa0578280:intron | 15.0% |
| !! | TTTGATTATCAACAAATTAT+AGG | + | chr4_1:82834234-82834253 | Msa0578280:intron | 15.0% |
| !!! | AGCAAAATTTATTTTTAAAC+AGG | + | chr4_1:82834488-82834507 | Msa0578280:intron | 15.0% |
| !!! | GCAAAATTTATTTTTAAACA+GGG | + | chr4_1:82834489-82834508 | Msa0578280:intron | 15.0% |
| !! | TTTATCGTAAAAATAGAATT+TGG | + | chr4_1:82834609-82834628 | Msa0578280:intron | 15.0% |
| !! | TTATCGTAAAAATAGAATTT+GGG | + | chr4_1:82834610-82834629 | Msa0578280:intron | 15.0% |
| !!! | TTTAGTTTTGTAATCTATTT+TGG | + | chr4_1:82834829-82834848 | Msa0578280:intron | 15.0% |
| !!! | TAAGCATTTAAAATAAACAA+GGG | - | chr4_1:82835279-82835298 | None:intergenic | 15.0% |
| !! | AAAACTTATTTGCTTTATAT+TGG | + | chr4_1:82835328-82835347 | Msa0578280:intron | 15.0% |
| !! | AAACTTATTTGCTTTATATT+GGG | + | chr4_1:82835329-82835348 | Msa0578280:intron | 15.0% |
| !!! | ACAAATTATTAGATACTTTT+CGG | - | chr4_1:82835609-82835628 | None:intergenic | 15.0% |
| !! | ATGACAATTATATATTAAGT+AGG | - | chr4_1:82835690-82835709 | None:intergenic | 15.0% |
| !! | GTATAATTTATACAATTCTT+CGG | - | chr4_1:82836652-82836671 | None:intergenic | 15.0% |
| !! | AAACGAAAATTAAAAATGAA+TGG | - | chr4_1:82836894-82836913 | None:intergenic | 15.0% |
| !! | TAAAAATCTAGATAATTGAA+AGG | - | chr4_1:82837463-82837482 | None:intergenic | 15.0% |
| !! | TTAGTATTAATATGATACAA+TGG | + | chr4_1:82837576-82837595 | Msa0578280:three_prime_UTR | 15.0% |
| !! | GAATACAAAGAAAGATATTT+AGG | - | chr4_1:82833534-82833553 | None:intergenic | 20.0% |
| !! | AAATATCTTTCTTTGTATTC+TGG | + | chr4_1:82833534-82833553 | Msa0578280:intron | 20.0% |
| !! | TAGAATCAAAAAATATTCAG+AGG | + | chr4_1:82833583-82833602 | Msa0578280:intron | 20.0% |
| !!! | TTTTTTTTTATTGTCTTCAG+TGG | + | chr4_1:82833672-82833691 | Msa0578280:intron | 20.0% |
| !!! | ATTGATGATTTTGATTCATT+TGG | + | chr4_1:82833702-82833721 | Msa0578280:intron | 20.0% |
| !!! | TTTGATTCATTTGGTATTTT+AGG | + | chr4_1:82833711-82833730 | Msa0578280:intron | 20.0% |
| !!! | TTGATTCATTTGGTATTTTA+GGG | + | chr4_1:82833712-82833731 | Msa0578280:intron | 20.0% |
| !! | GTTTCTACAATTAAATTCAA+AGG | + | chr4_1:82833774-82833793 | Msa0578280:intron | 20.0% |
| !! | TTACAAATATAGCTTATGAT+TGG | - | chr4_1:82834718-82834737 | None:intergenic | 20.0% |
| !!! | GCTTTGTTTTGTTTATTATT+GGG | + | chr4_1:82834894-82834913 | Msa0578280:intron | 20.0% |
| !!! | ATTGGGATTGTATTTTATTT+TGG | + | chr4_1:82834911-82834930 | Msa0578280:intron | 20.0% |
| !!! | ATAATATGAATTTTGGGATT+AGG | + | chr4_1:82835043-82835062 | Msa0578280:intron | 20.0% |
| !!! | GAATTTTTTTTTGGACTTTT+TGG | + | chr4_1:82835245-82835264 | Msa0578280:intron | 20.0% |
| !!! | CTAAGCATTTAAAATAAACA+AGG | - | chr4_1:82835280-82835299 | None:intergenic | 20.0% |
| !!! | TGAGTTGTTTTAAATTTTGA+AGG | + | chr4_1:82835301-82835320 | Msa0578280:intron | 20.0% |
| !!! | CAAATTATTAGATACTTTTC+GGG | - | chr4_1:82835608-82835627 | None:intergenic | 20.0% |
| !! | GAAAATTAATTCTGGTAAAT+GGG | + | chr4_1:82836522-82836541 | Msa0578280:CDS | 20.0% |
| !! | AAAGTAACAATGAAAATCAA+CGG | - | chr4_1:82836713-82836732 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTTAGGATAATAT+TGG | + | chr4_1:82836799-82836818 | Msa0578280:intron | 20.0% |
| !!! | AATGGATGAAGTATTATATA+AGG | - | chr4_1:82836876-82836895 | None:intergenic | 20.0% |
| !!! | TAAGTAGTTAAAGGTATTAT+AGG | + | chr4_1:82837035-82837054 | Msa0578280:intron | 20.0% |
| !!! | TTCTTGTTATGTAGTTATAT+TGG | + | chr4_1:82837069-82837088 | Msa0578280:intron | 20.0% |
| !!! | CAACTTAGAAATTACTTTTA+CGG | + | chr4_1:82837121-82837140 | Msa0578280:intron | 20.0% |
| !!! | AACAATGTTGACTTTTTCAT+AGG | + | chr4_1:82833444-82833463 | Msa0578280:intron | 25.0% |
| ! | ATCAAAAAATATTCAGAGGA+AGG | + | chr4_1:82833587-82833606 | Msa0578280:intron | 25.0% |
| !!! | TGGTTTTTTCTTTATGTTTG+TGG | + | chr4_1:82833842-82833861 | Msa0578280:intron | 25.0% |
| !! | ATAACTTCTCTAAAAACTCA+AGG | - | chr4_1:82834081-82834100 | None:intergenic | 25.0% |
| ! | GTTAAATGGCGAATAAAATT+TGG | + | chr4_1:82834268-82834287 | Msa0578280:intron | 25.0% |
| !!! | TTTTAAGTTGGGACAAATTA+TGG | + | chr4_1:82834299-82834318 | Msa0578280:intron | 25.0% |
| ! | GTAAGAGTTTCTGAATTATA+TGG | - | chr4_1:82834337-82834356 | None:intergenic | 25.0% |
| !!! | TTACTTTTACATTGCAGTAA+TGG | + | chr4_1:82834353-82834372 | Msa0578280:intron | 25.0% |
| !! | CTCTCATTTTACTTATTTGA+AGG | + | chr4_1:82834457-82834476 | Msa0578280:intron | 25.0% |
| !! | AAAATAGAATTTGGGATGAA+TGG | + | chr4_1:82834618-82834637 | Msa0578280:intron | 25.0% |
| ! | TTAGAGCTTATCTCATAAAA+TGG | - | chr4_1:82834742-82834761 | None:intergenic | 25.0% |
| !!! | TGTAATCTATTTTGGTTGTT+TGG | + | chr4_1:82834837-82834856 | Msa0578280:intron | 25.0% |
| ! | AATAAACAAAACAAAGCCTT+TGG | - | chr4_1:82834891-82834910 | None:intergenic | 25.0% |
| !!! | GGCTTTGTTTTGTTTATTAT+TGG | + | chr4_1:82834893-82834912 | Msa0578280:intron | 25.0% |
| ! | AAAAATGTTTACTTTCAGAG+GGG | - | chr4_1:82835010-82835029 | None:intergenic | 25.0% |
| ! | GAAAAATGTTTACTTTCAGA+GGG | - | chr4_1:82835011-82835030 | None:intergenic | 25.0% |
| ! | TGAAAAATGTTTACTTTCAG+AGG | - | chr4_1:82835012-82835031 | None:intergenic | 25.0% |
| ! | GTAACGAAACACAATTAAAA+TGG | - | chr4_1:82835862-82835881 | None:intergenic | 25.0% |
| !! | ATATGTTTGTTAACGTATCT+TGG | + | chr4_1:82835887-82835906 | Msa0578280:intron | 25.0% |
| ! | ATGATGAGGAAAATTAATTC+TGG | + | chr4_1:82836514-82836533 | Msa0578280:CDS | 25.0% |
| ! | GGAAAATTAATTCTGGTAAA+TGG | + | chr4_1:82836521-82836540 | Msa0578280:CDS | 25.0% |
| !! | GGATATGTTTGAAATTTATC+CGG | + | chr4_1:82836603-82836622 | Msa0578280:CDS | 25.0% |
| ! | GATTCTCGTATATATTGTAA+TGG | + | chr4_1:82836681-82836700 | Msa0578280:intron | 25.0% |
| !! | GAATGAATGGTATTAGTTTA+AGG | + | chr4_1:82836749-82836768 | Msa0578280:intron | 25.0% |
| !! | CTAAAAACTTCATTCTGAAA+TGG | - | chr4_1:82836791-82836810 | None:intergenic | 25.0% |
| !! | CATTTCAGAATGAAGTTTTT+AGG | + | chr4_1:82836789-82836808 | Msa0578280:intron | 25.0% |
| ! | ATGAGATGATAAGTAGTTAA+AGG | + | chr4_1:82837026-82837045 | Msa0578280:intron | 25.0% |
| ! | AGTGATATTTGATTATATCG+AGG | + | chr4_1:82837337-82837356 | Msa0578280:CDS | 25.0% |
| ! | TTATGTTCTTCTTCTTCTTT+AGG | - | chr4_1:82837425-82837444 | None:intergenic | 25.0% |
| ! | AGAAGAACATAATCATTGAT+AGG | + | chr4_1:82837433-82837452 | Msa0578280:exon | 25.0% |
| !! | CTATTTTCAATCGAATGTAT+AGG | + | chr4_1:82837654-82837673 | Msa0578280:three_prime_UTR | 25.0% |
| ! | CAATTGTGATAACTCATAAA+AGG | + | chr4_1:82837711-82837730 | Msa0578280:three_prime_UTR | 25.0% |
| TGATTTGAATTTGAATGCAG+TGG | + | chr4_1:82833228-82833247 | Msa0578280:CDS | 30.0% | |
| ! | TTTTTCTTCATCTCTTACCA+TGG | - | chr4_1:82833287-82833306 | None:intergenic | 30.0% |
| ! | GTTATATTTCGGGTACTAAT+AGG | + | chr4_1:82833378-82833397 | Msa0578280:intron | 30.0% |
| ! | TTCATAGGTTGAGAATCAAT+AGG | + | chr4_1:82833459-82833478 | Msa0578280:intron | 30.0% |
| CAAAGAAAGATATTTAGGTG+CGG | - | chr4_1:82833529-82833548 | None:intergenic | 30.0% | |
| AAACTCACTGAAAAAATCGA+TGG | - | chr4_1:82833626-82833645 | None:intergenic | 30.0% | |
| TCAAAATTGAAGCTTGATGT+TGG | + | chr4_1:82833813-82833832 | Msa0578280:intron | 30.0% | |
| AGGACATGTAGAAAGTTAAA+TGG | + | chr4_1:82834254-82834273 | Msa0578280:intron | 30.0% | |
| !!! | TTGGAATGCTTGTTTTAAGT+TGG | + | chr4_1:82834287-82834306 | Msa0578280:intron | 30.0% |
| !!! | TGGAATGCTTGTTTTAAGTT+GGG | + | chr4_1:82834288-82834307 | Msa0578280:intron | 30.0% |
| ACAAATTATGGTCATGTTTG+AGG | + | chr4_1:82834311-82834330 | Msa0578280:intron | 30.0% | |
| !! | AAGTTTTAGTCCAAAGAATG+TGG | + | chr4_1:82834424-82834443 | Msa0578280:intron | 30.0% |
| TACTAAAACTCCACATTCTT+TGG | - | chr4_1:82834437-82834456 | None:intergenic | 30.0% | |
| !! | ATTTTTAAACAGGGAGCATA+TGG | + | chr4_1:82834498-82834517 | Msa0578280:intron | 30.0% |
| !!! | AATCTATTTTGGTTGTTTGG+AGG | + | chr4_1:82834840-82834859 | Msa0578280:intron | 30.0% |
| ! | AAAGCTTTGATACTCCAAAT+TGG | + | chr4_1:82835548-82835567 | Msa0578280:intron | 30.0% |
| ATACTCCAAATTGGAAAGTA+TGG | + | chr4_1:82835557-82835576 | Msa0578280:intron | 30.0% | |
| GATATCCATACTTTCCAATT+TGG | - | chr4_1:82835565-82835584 | None:intergenic | 30.0% | |
| ATTGAAGATGCATATTGCAT+CGG | - | chr4_1:82835659-82835678 | None:intergenic | 30.0% | |
| AATGATATGTCGTATCTGAA+TGG | - | chr4_1:82835811-82835830 | None:intergenic | 30.0% | |
| ACATAGAACGATACAGATAT+AGG | - | chr4_1:82835946-82835965 | None:intergenic | 30.0% | |
| ! | CTATAAGATTTTCAGTGTTC+AGG | - | chr4_1:82836025-82836044 | None:intergenic | 30.0% |
| GGTTATTACGAAGTTTGTAA+AGG | + | chr4_1:82836543-82836562 | Msa0578280:intron | 30.0% | |
| CTTGATAGATTGAGAATGAA+TGG | + | chr4_1:82836736-82836755 | Msa0578280:intron | 30.0% | |
| AGTTAATTCTGCATTGAACT+TGG | - | chr4_1:82836951-82836970 | None:intergenic | 30.0% | |
| TTTATCGCAGAGAGATAAAT+AGG | + | chr4_1:82836999-82837018 | Msa0578280:intron | 30.0% | |
| TTAAAAAATGCTCCAAGATG+AGG | + | chr4_1:82837511-82837530 | Msa0578280:three_prime_UTR | 30.0% | |
| TATCTAATAACTGCTGACAT+AGG | + | chr4_1:82837544-82837563 | Msa0578280:three_prime_UTR | 30.0% | |
| CTTCATATGAATAGACTCAA+AGG | - | chr4_1:82837681-82837700 | None:intergenic | 30.0% | |
| TGAGTCTATTCATATGAAGT+TGG | + | chr4_1:82837682-82837701 | Msa0578280:three_prime_UTR | 30.0% | |
| ! | TTTGTGTTGTTGTGTTGTTC+TGG | + | chr4_1:82833329-82833348 | Msa0578280:CDS | 35.0% |
| !! | ATAGGATTTTGACACGTAAG+AGG | + | chr4_1:82833477-82833496 | Msa0578280:intron | 35.0% |
| !! | TAGGATTTTGACACGTAAGA+GGG | + | chr4_1:82833478-82833497 | Msa0578280:intron | 35.0% |
| GACATGATCTGAGCTTATTT+AGG | + | chr4_1:82833994-82834013 | Msa0578280:intron | 35.0% | |
| ACATACAGCATGCATCTAAA+AGG | - | chr4_1:82834058-82834077 | None:intergenic | 35.0% | |
| TAATCAACTCAACTACGTGT+CGG | - | chr4_1:82834159-82834178 | None:intergenic | 35.0% | |
| ! | CGTTACATTTTCTTTGCGTT+TGG | + | chr4_1:82834546-82834565 | Msa0578280:intron | 35.0% |
| GATGAATGGAAACCGAAAAT+GGG | + | chr4_1:82834632-82834651 | Msa0578280:intron | 35.0% | |
| ATTGTTTCCATAAGCTGTCT+AGG | + | chr4_1:82834676-82834695 | Msa0578280:intron | 35.0% | |
| ! | TTTTTCTCCTAGACAGCTTA+TGG | - | chr4_1:82834686-82834705 | None:intergenic | 35.0% |
| !! | CTAAATCAGGAAGAGTATCT+CGG | - | chr4_1:82834795-82834814 | None:intergenic | 35.0% |
| GAGATACTCTTCCTGATTTA+GGG | + | chr4_1:82834794-82834813 | Msa0578280:intron | 35.0% | |
| GTAAAGCATAACCCTAAATC+AGG | - | chr4_1:82834808-82834827 | None:intergenic | 35.0% | |
| ! | GACAATCATTGATGATCCAA+AGG | + | chr4_1:82834872-82834891 | Msa0578280:intron | 35.0% |
| TTATAGGACATTGACAGTAG+CGG | - | chr4_1:82835219-82835238 | None:intergenic | 35.0% | |
| TACTGAAATCTATGTAGTCG+TGG | - | chr4_1:82835511-82835530 | None:intergenic | 35.0% | |
| AGATTTCAGTATGCGAGTTA+TGG | + | chr4_1:82835520-82835539 | Msa0578280:intron | 35.0% | |
| !! | ATACTTTTCGGGAATGTATC+GGG | - | chr4_1:82835597-82835616 | None:intergenic | 35.0% |
| !! | GATACTTTTCGGGAATGTAT+CGG | - | chr4_1:82835598-82835617 | None:intergenic | 35.0% |
| TTGTTAACGTATCTTGGTCA+TGG | + | chr4_1:82835893-82835912 | Msa0578280:intron | 35.0% | |
| TGTTAACGTATCTTGGTCAT+GGG | + | chr4_1:82835894-82835913 | Msa0578280:intron | 35.0% | |
| TCTGTATCGTTCTATGTATC+TGG | + | chr4_1:82835949-82835968 | Msa0578280:intron | 35.0% | |
| CTGTATCGTTCTATGTATCT+GGG | + | chr4_1:82835950-82835969 | Msa0578280:intron | 35.0% | |
| ! | GAGATTGATGACTCTGTTAA+TGG | + | chr4_1:82836073-82836092 | Msa0578280:CDS | 35.0% |
| TCTTCTTCTATGTATTCCTC+AGG | - | chr4_1:82836142-82836161 | None:intergenic | 35.0% | |
| !! | TCTTGGTCTTGTTTGTAAGA+TGG | - | chr4_1:82836175-82836194 | None:intergenic | 35.0% |
| ATATCCTTTCTACTACTTCC+AGG | - | chr4_1:82836589-82836608 | None:intergenic | 35.0% | |
| AGAAACAAACGAGGTAAGTA+GGG | - | chr4_1:82837221-82837240 | None:intergenic | 35.0% | |
| TAGAAACAAACGAGGTAAGT+AGG | - | chr4_1:82837222-82837241 | None:intergenic | 35.0% | |
| ! | TTATATCGAGGAGCATAATG+TGG | + | chr4_1:82837349-82837368 | Msa0578280:CDS | 35.0% |
| ! | TATATCGAGGAGCATAATGT+GGG | + | chr4_1:82837350-82837369 | Msa0578280:CDS | 35.0% |
| TATTATTGCACACCTCATCT+TGG | - | chr4_1:82837526-82837545 | None:intergenic | 35.0% | |
| GGAATAATTAAGCGCTATCA+AGG | - | chr4_1:82837747-82837766 | None:intergenic | 35.0% | |
| ! | AACACGTGGCAAGAAAGTAT+TGG | + | chr4_1:82833414-82833433 | Msa0578280:intron | 40.0% |
| !! | ACACGTGGCAAGAAAGTATT+GGG | + | chr4_1:82833415-82833434 | Msa0578280:intron | 40.0% |
| !! | AAGCTTGATGTTGGTGTTGT+TGG | + | chr4_1:82833822-82833841 | Msa0578280:intron | 40.0% |
| ATGGCATCTAACGTATGCAT+AGG | + | chr4_1:82834372-82834391 | Msa0578280:intron | 40.0% | |
| GGATGAATGGAAACCGAAAA+TGG | + | chr4_1:82834631-82834650 | Msa0578280:intron | 40.0% | |
| AATGGAAACCGAAAATGGGA+CGG | + | chr4_1:82834636-82834655 | Msa0578280:intron | 40.0% | |
| CGGCTTATGTCAGCTTATTT+AGG | - | chr4_1:82834775-82834794 | None:intergenic | 40.0% | |
| CGAGATACTCTTCCTGATTT+AGG | + | chr4_1:82834793-82834812 | Msa0578280:intron | 40.0% | |
| TCAACCTATGTAGCCAATAG+TGG | + | chr4_1:82835103-82835122 | Msa0578280:intron | 40.0% | |
| CAGAAATCTGCAATGCAATC+GGG | - | chr4_1:82835149-82835168 | None:intergenic | 40.0% | |
| GCAGAAATCTGCAATGCAAT+CGG | - | chr4_1:82835150-82835169 | None:intergenic | 40.0% | |
| GAAATCTATGTAGTCGTGGT+GGG | - | chr4_1:82835507-82835526 | None:intergenic | 40.0% | |
| TGAAATCTATGTAGTCGTGG+TGG | - | chr4_1:82835508-82835527 | None:intergenic | 40.0% | |
| ATTCAGGTACGACATGTCAT+TGG | + | chr4_1:82835759-82835778 | Msa0578280:intron | 40.0% | |
| TCTATGTATCTGGGCTTCTT+AGG | + | chr4_1:82835959-82835978 | Msa0578280:intron | 40.0% | |
| !!! | CAGATCTTTTGTTGTTGCAG+TGG | + | chr4_1:82836045-82836064 | Msa0578280:intron | 40.0% |
| AATGGCGATACAGTAAGAGA+TGG | + | chr4_1:82836091-82836110 | Msa0578280:CDS | 40.0% | |
| CTTGAGTCACGTTATCATCT+TGG | - | chr4_1:82836192-82836211 | None:intergenic | 40.0% | |
| AACGTGACTCAAGATTCTTC+TGG | + | chr4_1:82836199-82836218 | Msa0578280:CDS | 40.0% | |
| ! | GCTCTTGTTTGCAACAAAGA+GGG | + | chr4_1:82836415-82836434 | Msa0578280:CDS | 40.0% |
| CGAAAAGATTGTGAGGCAAA+GGG | + | chr4_1:82836459-82836478 | Msa0578280:CDS | 40.0% | |
| CTACTACTTCCAGGATTCAA+GGG | - | chr4_1:82836580-82836599 | None:intergenic | 40.0% | |
| TCTACTACTTCCAGGATTCA+AGG | - | chr4_1:82836581-82836600 | None:intergenic | 40.0% | |
| GAATCCTGGAAGTAGTAGAA+AGG | + | chr4_1:82836582-82836601 | Msa0578280:CDS | 40.0% | |
| ! | GAAAAAGCATAGGAACTGAC+CGG | - | chr4_1:82836625-82836644 | None:intergenic | 40.0% |
| ! | CTTCGGTAGTGAAAAAGCAT+AGG | - | chr4_1:82836635-82836654 | None:intergenic | 40.0% |
| TTTCTCTCGTGGAAAGGATA+AGG | - | chr4_1:82837098-82837117 | None:intergenic | 40.0% | |
| TTGCAATTTCTCTCGTGGAA+AGG | - | chr4_1:82837104-82837123 | None:intergenic | 40.0% | |
| CTAAGTTGCAATTTCTCTCG+TGG | - | chr4_1:82837109-82837128 | None:intergenic | 40.0% | |
| AAACAAACGAGGTAAGTAGG+GGG | - | chr4_1:82837219-82837238 | None:intergenic | 40.0% | |
| GAAACAAACGAGGTAAGTAG+GGG | - | chr4_1:82837220-82837239 | None:intergenic | 40.0% | |
| GACTGACATAGAAACAAACG+AGG | - | chr4_1:82837230-82837249 | None:intergenic | 40.0% | |
| ! | GTATGCTGCTACCTCGTTTT+CGG | - | chr4_1:82833203-82833222 | None:intergenic | 45.0% |
| TGGAAGCTCTACGAATAGTG+CGG | + | chr4_1:82833248-82833267 | Msa0578280:CDS | 45.0% | |
| ATAACCCACCCGATCCAATA+CGG | - | chr4_1:82833363-82833382 | None:intergenic | 45.0% | |
| !! | GGATCGGGTGGGTTATATTT+CGG | + | chr4_1:82833367-82833386 | Msa0578280:intron | 45.0% |
| !! | GATCGGGTGGGTTATATTTC+GGG | + | chr4_1:82833368-82833387 | Msa0578280:intron | 45.0% |
| GGGTACTAATAGGATCCATC+TGG | + | chr4_1:82833388-82833407 | Msa0578280:intron | 45.0% | |
| !! | TACGTGTCGGTTTGTTATCG+CGG | - | chr4_1:82834146-82834165 | None:intergenic | 45.0% |
| ATGGAAACCGAAAATGGGAC+GGG | + | chr4_1:82834637-82834656 | Msa0578280:intron | 45.0% | |
| ! | GTTTACACCCGTCCCATTTT+CGG | - | chr4_1:82834647-82834666 | None:intergenic | 45.0% |
| AAATGGGACGGGTGTAAACT+CGG | + | chr4_1:82834648-82834667 | Msa0578280:intron | 45.0% | |
| TTTCAGAGGGGACTACAATG+AGG | - | chr4_1:82834998-82835017 | None:intergenic | 45.0% | |
| AGATGTAGTCCCACTGATAG+CGG | + | chr4_1:82835173-82835192 | Msa0578280:intron | 45.0% | |
| TCCCTAAACTTGTGACGTAG+CGG | + | chr4_1:82835462-82835481 | Msa0578280:intron | 45.0% | |
| TAACGTATCTTGGTCATGGG+CGG | + | chr4_1:82835897-82835916 | Msa0578280:intron | 45.0% | |
| ! | TACAGTAAGAGATGGTGCCA+TGG | + | chr4_1:82836099-82836118 | Msa0578280:CDS | 45.0% |
| TATGCTACCAGCTACAACCA+TGG | - | chr4_1:82836119-82836138 | None:intergenic | 45.0% | |
| GTGACTCAAGATTCTTCTGG+AGG | + | chr4_1:82836202-82836221 | Msa0578280:CDS | 45.0% | |
| GCGTATGATGAATCCAACCT+CGG | - | chr4_1:82836347-82836366 | None:intergenic | 45.0% | |
| TAAGCAAGCTCTCACGATCA+AGG | + | chr4_1:82836368-82836387 | Msa0578280:CDS | 45.0% | |
| CTCTCACGATCAAGGAAAGA+CGG | + | chr4_1:82836376-82836395 | Msa0578280:CDS | 45.0% | |
| AGGAAAGACGGAACTGCTAT+TGG | + | chr4_1:82836388-82836407 | Msa0578280:CDS | 45.0% | |
| AAGACGGAACTGCTATTGGA+CGG | + | chr4_1:82836392-82836411 | Msa0578280:CDS | 45.0% | |
| ! | GGCTCTTGTTTGCAACAAAG+AGG | + | chr4_1:82836414-82836433 | Msa0578280:CDS | 45.0% |
| ! | ACAATCTTTTCGCGCTTGTC+AGG | - | chr4_1:82836451-82836470 | None:intergenic | 45.0% |
| ACAAGCGCGAAAAGATTGTG+AGG | + | chr4_1:82836452-82836471 | Msa0578280:CDS | 45.0% | |
| GCGAAAAGATTGTGAGGCAA+AGG | + | chr4_1:82836458-82836477 | Msa0578280:CDS | 45.0% | |
| !! | AGAAACAAGGGTTGGTTGCA+GGG | + | chr4_1:82836483-82836502 | Msa0578280:CDS | 45.0% |
| GCAGGGCAATGATTATGATG+AGG | + | chr4_1:82836500-82836519 | Msa0578280:CDS | 45.0% | |
| AGCATAATGTGGGTCTCTCA+AGG | + | chr4_1:82837360-82837379 | Msa0578280:CDS | 45.0% | |
| GCGTATAGTAGACAGTGTGA+AGG | + | chr4_1:82837391-82837410 | Msa0578280:CDS | 45.0% | |
| AGTAGACAGTGTGAAGGAGA+TGG | + | chr4_1:82837397-82837416 | Msa0578280:CDS | 45.0% | |
| !!! | ATAAAAAATAATATGAATTT+TGG | + | chr4_1:82835036-82835055 | Msa0578280:intron | 5.0% |
| !!! | TAAAAAATAATATGAATTTT+GGG | + | chr4_1:82835037-82835056 | Msa0578280:intron | 5.0% |
| TAACCCACCCGATCCAATAC+GGG | - | chr4_1:82833362-82833381 | None:intergenic | 50.0% | |
| GATCCATCTGGTAGAACACG+TGG | + | chr4_1:82833400-82833419 | Msa0578280:intron | 50.0% | |
| TTGCCACGTGTTCTACCAGA+TGG | - | chr4_1:82833406-82833425 | None:intergenic | 50.0% | |
| TGACACGTAAGAGGGACACT+TGG | + | chr4_1:82833486-82833505 | Msa0578280:intron | 50.0% | |
| GACACGTAAGAGGGACACTT+GGG | + | chr4_1:82833487-82833506 | Msa0578280:intron | 50.0% | |
| AGGGGACTACAATGAGGACA+CGG | - | chr4_1:82834992-82835011 | None:intergenic | 50.0% | |
| ! | AGGGCCACTATTGGCTACAT+AGG | - | chr4_1:82835110-82835129 | None:intergenic | 50.0% |
| ATGTAGCCAATAGTGGCCCT+TGG | + | chr4_1:82835110-82835129 | Msa0578280:intron | 50.0% | |
| TGTAGCCAATAGTGGCCCTT+GGG | + | chr4_1:82835111-82835130 | Msa0578280:intron | 50.0% | |
| GCCGCTACGTCACAAGTTTA+GGG | - | chr4_1:82835466-82835485 | None:intergenic | 50.0% | |
| ! | ATGTAGTCGTGGTGGGATAG+CGG | - | chr4_1:82835500-82835519 | None:intergenic | 50.0% |
| TGTAGCTGGTAGCATACCTG+AGG | + | chr4_1:82836123-82836142 | Msa0578280:CDS | 50.0% | |
| TCGAACTCCTGACCCACATA+GGG | - | chr4_1:82836283-82836302 | None:intergenic | 50.0% | |
| TTACAATGCATACGCAGCCG+AGG | + | chr4_1:82836327-82836346 | Msa0578280:CDS | 50.0% | |
| AGACGGAACTGCTATTGGAC+GGG | + | chr4_1:82836393-82836412 | Msa0578280:CDS | 50.0% | |
| TGAGGCAAAGGGCAGAAACA+AGG | + | chr4_1:82836470-82836489 | Msa0578280:CDS | 50.0% | |
| GAGGCAAAGGGCAGAAACAA+GGG | + | chr4_1:82836471-82836490 | Msa0578280:CDS | 50.0% | |
| CAAAGGGCAGAAACAAGGGT+TGG | + | chr4_1:82836475-82836494 | Msa0578280:CDS | 50.0% | |
| !! | CAGAAACAAGGGTTGGTTGC+AGG | + | chr4_1:82836482-82836501 | Msa0578280:CDS | 50.0% |
| CACACACATCCCTTGAATCC+TGG | + | chr4_1:82836568-82836587 | Msa0578280:CDS | 50.0% | |
| CTCTCGTGGAAAGGATAAGG+TGG | - | chr4_1:82837095-82837114 | None:intergenic | 50.0% | |
| CCAACTGCTGAGATAGTTCG+CGG | - | chr4_1:82837274-82837293 | None:intergenic | 50.0% | |
| GCGGAACAACGTAGTTGCCA+TGG | + | chr4_1:82833267-82833286 | Msa0578280:CDS | 55.0% | |
| TTCTGGTGCACCACCCGTAT+TGG | + | chr4_1:82833346-82833365 | Msa0578280:CDS | 55.0% | |
| GTGCACCACCCGTATTGGAT+CGG | + | chr4_1:82833351-82833370 | Msa0578280:CDS | 55.0% | |
| TGCACCACCCGTATTGGATC+GGG | + | chr4_1:82833352-82833371 | Msa0578280:CDS | 55.0% | |
| GGCCGCTACGTCACAAGTTT+AGG | - | chr4_1:82835467-82835486 | None:intergenic | 55.0% | |
| ! | TGTAGTCGTGGTGGGATAGC+GGG | - | chr4_1:82835499-82835518 | None:intergenic | 55.0% |
| !! | GATGGTGCCATGGTTGTAGC+TGG | + | chr4_1:82836109-82836128 | Msa0578280:CDS | 55.0% |
| ! | TGGTAGTGTGGGAACTGCAG+CGG | - | chr4_1:82836242-82836261 | None:intergenic | 55.0% |
| !! | GCAGAAGCGTCTGGTAGTGT+GGG | - | chr4_1:82836253-82836272 | None:intergenic | 55.0% |
| !! | AGCAGAAGCGTCTGGTAGTG+TGG | - | chr4_1:82836254-82836273 | None:intergenic | 55.0% |
| ACTACCAGACGCTTCTGCTG+AGG | + | chr4_1:82836255-82836274 | Msa0578280:CDS | 55.0% | |
| TTCTGCTGAGGAGCCCTATG+TGG | + | chr4_1:82836267-82836286 | Msa0578280:intron | 55.0% | |
| TCTGCTGAGGAGCCCTATGT+GGG | + | chr4_1:82836268-82836287 | Msa0578280:intron | 55.0% | |
| CTCGAACTCCTGACCCACAT+AGG | - | chr4_1:82836284-82836303 | None:intergenic | 55.0% | |
| TGTGGGTCAGGAGTTCGAGT+CGG | + | chr4_1:82836285-82836304 | Msa0578280:intron | 55.0% | |
| AATGCATACGCAGCCGAGGT+TGG | + | chr4_1:82836331-82836350 | Msa0578280:CDS | 55.0% | |
| CCGCGAACTATCTCAGCAGT+TGG | + | chr4_1:82837271-82837290 | Msa0578280:CDS | 55.0% | |
| ACCACCCGTATTGGATCGGG+TGG | + | chr4_1:82833355-82833374 | Msa0578280:intron | 60.0% | |
| CCACCCGTATTGGATCGGGT+GGG | + | chr4_1:82833356-82833375 | Msa0578280:intron | 60.0% | |
| TAGCGCCCAAGGGCCACTAT+TGG | - | chr4_1:82835119-82835138 | None:intergenic | 60.0% | |
| GCAACTGGGCCGCTATCAGT+GGG | - | chr4_1:82835185-82835204 | None:intergenic | 60.0% | |
| !! | CACTGATAGCGGCCCAGTTG+CGG | + | chr4_1:82835184-82835203 | Msa0578280:intron | 60.0% |
| CGGCCACTACAACCGCAACT+GGG | - | chr4_1:82835199-82835218 | None:intergenic | 60.0% | |
| !! | TGGGATAGCGGGTAGCGGTA+TGG | - | chr4_1:82835488-82835507 | None:intergenic | 60.0% |
| GGTAGTGTGGGAACTGCAGC+GGG | - | chr4_1:82836241-82836260 | None:intergenic | 60.0% | |
| TGAGGAGCCCTATGTGGGTC+AGG | + | chr4_1:82836273-82836292 | Msa0578280:intron | 60.0% | |
| ! | CCTCGTTTTCGGTCCCTCCC+AGG | - | chr4_1:82833192-82833211 | None:intergenic | 65.0% |
| CCTGGGAGGGACCGAAAACG+AGG | + | chr4_1:82833189-82833208 | Msa0578280:CDS | 65.0% | |
| CCCACCCGATCCAATACGGG+TGG | - | chr4_1:82833359-82833378 | None:intergenic | 65.0% | |
| ! | GGGTATCGCGTAGCGCCCAA+GGG | - | chr4_1:82835129-82835148 | None:intergenic | 65.0% |
| CGCAACTGGGCCGCTATCAG+TGG | - | chr4_1:82835186-82835205 | None:intergenic | 65.0% | |
| CGGCCCAGTTGCGGTTGTAG+TGG | + | chr4_1:82835193-82835212 | Msa0578280:intron | 65.0% | |
| GCGGCCACTACAACCGCAAC+TGG | - | chr4_1:82835200-82835219 | None:intergenic | 65.0% | |
| !! | CGTGGTGGGATAGCGGGTAG+CGG | - | chr4_1:82835493-82835512 | None:intergenic | 65.0% |
| !! | GGCTCCTCAGCAGAAGCGTC+TGG | - | chr4_1:82836262-82836281 | None:intergenic | 65.0% |
| ! | CGGGTATCGCGTAGCGCCCA+AGG | - | chr4_1:82835130-82835149 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82833178 | 82837780 | 82833178 | ID=Msa0578280;Name=Msa0578280 |
| chr4_1 | mRNA | 82833178 | 82837780 | 82833178 | ID=Msa0578280-mRNA-1;Parent=Msa0578280;Name=Msa0578280-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.25|0.2|0.8|0.5|0.2|5|329|312 |
| chr4_1 | exon | 82833178 | 82833373 | 82833178 | ID=Msa0578280-mRNA-1:exon:30072;Parent=Msa0578280-mRNA-1 |
| chr4_1 | exon | 82836065 | 82836285 | 82836065 | ID=Msa0578280-mRNA-1:exon:30073;Parent=Msa0578280-mRNA-1 |
| chr4_1 | exon | 82836295 | 82836543 | 82836295 | ID=Msa0578280-mRNA-1:exon:30074;Parent=Msa0578280-mRNA-1 |
| chr4_1 | exon | 82836556 | 82836624 | 82836556 | ID=Msa0578280-mRNA-1:exon:30075;Parent=Msa0578280-mRNA-1 |
| chr4_1 | exon | 82837248 | 82837780 | 82837248 | ID=Msa0578280-mRNA-1:exon:30076;Parent=Msa0578280-mRNA-1 |
| chr4_1 | CDS | 82833178 | 82833373 | 82833178 | ID=Msa0578280-mRNA-1:cds;Parent=Msa0578280-mRNA-1 |
| chr4_1 | CDS | 82836065 | 82836285 | 82836065 | ID=Msa0578280-mRNA-1:cds;Parent=Msa0578280-mRNA-1 |
| chr4_1 | CDS | 82836295 | 82836543 | 82836295 | ID=Msa0578280-mRNA-1:cds;Parent=Msa0578280-mRNA-1 |
| chr4_1 | CDS | 82836556 | 82836624 | 82836556 | ID=Msa0578280-mRNA-1:cds;Parent=Msa0578280-mRNA-1 |
| chr4_1 | CDS | 82837248 | 82837451 | 82837248 | ID=Msa0578280-mRNA-1:cds;Parent=Msa0578280-mRNA-1 |
| chr4_1 | three_prime_UTR | 82837452 | 82837780 | 82837452 | ID=Msa0578280-mRNA-1:three_prime_utr;Parent=Msa0578280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
