Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606050 | XP_003606991.2 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 8.05e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606050 | sp|Q9SMW7|BTF3_ARATH | 86.755 | 151 | 18 | 2 | 1 | 150 | 1 | 150 | 1.17e-90 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606050 | Msa0646990 | 0.896983 | 2.183968e-76 | -8.615850e-47 |
| Msa0606050 | Msa1079920 | 0.802996 | 4.303892e-49 | -8.615850e-47 |
| Msa0122290 | Msa0606050 | 0.809608 | 1.739713e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606050 | MtrunA17_Chr4g0035481 | 98.701 | 154 | 2 | 0 | 7 | 160 | 1 | 154 | 8.82e-110 | 308 |
| Msa0606050 | MtrunA17_Chr3g0084861 | 89.474 | 152 | 16 | 0 | 7 | 158 | 1 | 152 | 4.45e-98 | 279 |
| Msa0606050 | MtrunA17_Chr3g0084831 | 72.593 | 135 | 19 | 1 | 24 | 158 | 6 | 122 | 2.14e-63 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606050 | AT1G17880.1 | 86.755 | 151 | 18 | 2 | 1 | 150 | 1 | 150 | 1.19e-91 | 263 |
| Msa0606050 | AT1G73230.1 | 85.987 | 157 | 21 | 1 | 1 | 156 | 1 | 157 | 6.67e-87 | 251 |
Find 72 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGGTTAATATCTTTA+AGG | 0.165061 | 4_2:-52157863 | Msa0606050:CDS |
| CTGCTTCAGGAGCCTGCTTC+TGG | 0.192683 | 4_2:+52157157 | None:intergenic |
| GAAGATTCGGTTTAAGTTTA+AGG | 0.198576 | 4_2:+52159402 | None:intergenic |
| TATTATCTTCACATCATTTC+CGG | 0.213019 | 4_2:+52156805 | None:intergenic |
| AAGTTTAAGGTCAGTGATTT+AGG | 0.220905 | 4_2:+52159415 | None:intergenic |
| TAATTTCTTACTCTTTGTTT+GGG | 0.224790 | 4_2:+52157646 | None:intergenic |
| GTAATTTCTTACTCTTTGTT+TGG | 0.245420 | 4_2:+52157645 | None:intergenic |
| CTTGATTTCATCCAACTCTT+TGG | 0.260217 | 4_2:-52156862 | Msa0606050:three_prime_UTR |
| CGTTCACACCTATTCTCTTC+AGG | 0.268516 | 4_2:+52157899 | None:intergenic |
| AGATAATAGTTTCACATAAT+TGG | 0.278329 | 4_2:-52156790 | Msa0606050:three_prime_UTR |
| ATTGTTCAGCTATCTTCTTC+AGG | 0.297553 | 4_2:+52157181 | None:intergenic |
| TTTCACTTCTACAGAGTTGC+AGG | 0.308571 | 4_2:-52157339 | Msa0606050:intron |
| ACAGATTTAATTCAAGTATT+CGG | 0.319393 | 4_2:+52156924 | None:intergenic |
| GTTCAAAGCACATACCTAAT+TGG | 0.327309 | 4_2:+52157294 | None:intergenic |
| GCTGAACCAGCACCTGCTTC+AGG | 0.334925 | 4_2:+52157144 | None:intergenic |
| GTCTCTCCTGGGACAAGCTC+TGG | 0.335105 | 4_2:+52157090 | None:intergenic |
| CCTAGCATTATCCACCAATT+AGG | 0.352096 | 4_2:-52157308 | Msa0606050:intron |
| TCCAACTCTTTGGTGGTGTC+TGG | 0.356941 | 4_2:-52156852 | Msa0606050:three_prime_UTR |
| TACCTTTGGGGTTTAAGAAC+TGG | 0.359158 | 4_2:+52157827 | None:intergenic |
| AAGGTACCTTTGTGAAGATT+CGG | 0.407308 | 4_2:+52159389 | None:intergenic |
| CGTCCATTGCTGCTAATACA+TGG | 0.419485 | 4_2:-52157685 | Msa0606050:CDS |
| GATTTCATCCAACTCTTTGG+TGG | 0.427517 | 4_2:-52156859 | Msa0606050:three_prime_UTR |
| GCTGTCTCAAAAGTCTCTCC+TGG | 0.443808 | 4_2:+52157078 | None:intergenic |
| TATTAACCTCCTCAATTTGT+GGG | 0.452604 | 4_2:+52157872 | None:intergenic |
| ATGGGCTGATATTACCTTTG+GGG | 0.456873 | 4_2:+52157815 | None:intergenic |
| CAGAAGCAGGCTCCTGAAGC+AGG | 0.458056 | 4_2:-52157156 | Msa0606050:CDS |
| GGTCAGTGATTTAGGACAAA+GGG | 0.460327 | 4_2:+52159423 | None:intergenic |
| TCCTCCGGTTCGAACAGAAC+CGG | 0.461978 | 4_2:+52158409 | None:intergenic |
| CAGAGCACCCTGAAGAGAAT+AGG | 0.468639 | 4_2:-52157907 | Msa0606050:CDS |
| ATAACAAATCTAACTATCCT+TGG | 0.472981 | 4_2:+52157044 | None:intergenic |
| GTTCACACCTATTCTCTTCA+GGG | 0.476330 | 4_2:+52157900 | None:intergenic |
| TGTTTACCTCAGAAAGAAGA+AGG | 0.477565 | 4_2:-52157968 | Msa0606050:intron |
| TCTGTTCGAACCGGAGGAAA+GGG | 0.482236 | 4_2:-52158404 | Msa0606050:CDS |
| AAACAGTTTGAATTAGATGA+AGG | 0.483183 | 4_2:+52156898 | None:intergenic |
| ATATTAACCTCCTCAATTTG+TGG | 0.484190 | 4_2:+52157871 | None:intergenic |
| TTTCATATTTAAGTATTTCA+GGG | 0.489459 | 4_2:-52156980 | Msa0606050:three_prime_UTR |
| CAGGCTCCTGAAGCAGGTGC+TGG | 0.494992 | 4_2:-52157150 | Msa0606050:CDS |
| TAATTCAAACTGTTTCTGCT+TGG | 0.495425 | 4_2:-52156890 | Msa0606050:three_prime_UTR |
| AGCTGAACAATTCCAGAAGC+AGG | 0.497000 | 4_2:-52157169 | Msa0606050:CDS |
| CCTAATTGGTGGATAATGCT+AGG | 0.497579 | 4_2:+52157308 | None:intergenic |
| CAACAACTACAGATGACAAA+AGG | 0.502653 | 4_2:-52157933 | Msa0606050:CDS |
| GATGTCCCAGAGCTTGTCCC+AGG | 0.514432 | 4_2:-52157096 | Msa0606050:CDS |
| CATCTGTAGTTGTTGTCTTG+TGG | 0.525038 | 4_2:+52157941 | None:intergenic |
| TTCTGTTCGAACCGGAGGAA+AGG | 0.525397 | 4_2:-52158405 | Msa0606050:CDS |
| GCTAATACATGGGTTGTTAG+TGG | 0.526432 | 4_2:-52157674 | Msa0606050:CDS |
| TCTCTCCTGGGACAAGCTCT+GGG | 0.528395 | 4_2:+52157091 | None:intergenic |
| AACCTCCTCAATTTGTGGGA+TGG | 0.529776 | 4_2:+52157876 | None:intergenic |
| GAACGCCATCCCACAAATTG+AGG | 0.538253 | 4_2:-52157881 | Msa0606050:CDS |
| AACCCATGTATTAGCAGCAA+TGG | 0.539996 | 4_2:+52157682 | None:intergenic |
| GACAGCTGCTGAGGAGGCCA+AGG | 0.540301 | 4_2:-52157061 | Msa0606050:CDS |
| TCTGACGGTACCCTTTCCTC+CGG | 0.545452 | 4_2:+52158394 | None:intergenic |
| TCTTCTTCACACTGAGTCTG+AGG | 0.552196 | 4_2:-52159451 | Msa0606050:five_prime_UTR |
| AATTTCTTACTCTTTGTTTG+GGG | 0.553423 | 4_2:+52157647 | None:intergenic |
| ACCAGACACCACCAAAGAGT+TGG | 0.556120 | 4_2:+52156851 | None:intergenic |
| TGTAGTTGTTGTCTTGTGGA+CGG | 0.561453 | 4_2:+52157945 | None:intergenic |
| CTAATTGGTGGATAATGCTA+GGG | 0.563275 | 4_2:+52157309 | None:intergenic |
| ATGGCCGGTTCTGTTCGAAC+CGG | 0.568678 | 4_2:-52158413 | Msa0606050:CDS |
| GCCGGTTCTGTTCGAACCGG+AGG | 0.569814 | 4_2:-52158410 | Msa0606050:CDS |
| CTGTCTCAAAAGTCTCTCCT+GGG | 0.571093 | 4_2:+52157079 | None:intergenic |
| GTCCATTGCTGCTAATACAT+GGG | 0.579320 | 4_2:-52157684 | Msa0606050:CDS |
| ACTACACGAGAGAGAAGATA+AGG | 0.583989 | 4_2:+52159479 | None:intergenic |
| ATCCAGTTCTTAAACCCCAA+AGG | 0.585033 | 4_2:-52157829 | Msa0606050:intron |
| GAAAAGTTGATGAAGATGGC+CGG | 0.594138 | 4_2:-52158428 | Msa0606050:CDS |
| TCGTGAAAAGTTGATGAAGA+TGG | 0.598987 | 4_2:-52158432 | Msa0606050:CDS |
| AGGTCAGTGATTTAGGACAA+AGG | 0.599373 | 4_2:+52159422 | None:intergenic |
| CAAAGCACATACCTAATTGG+TGG | 0.599520 | 4_2:+52157297 | None:intergenic |
| GAGGAAAGGGTACCGTCAGA+AGG | 0.619370 | 4_2:-52158391 | Msa0606050:intron |
| CGCCATCCCACAAATTGAGG+AGG | 0.629572 | 4_2:-52157878 | Msa0606050:CDS |
| AGACTCAGTGTGAAGAAGAA+CGG | 0.635251 | 4_2:+52159455 | None:intergenic |
| CATATAAATATACCTTCTGA+CGG | 0.639530 | 4_2:+52158379 | None:intergenic |
| GTCAGTGATTTAGGACAAAG+GGG | 0.667143 | 4_2:+52159424 | None:intergenic |
| CTTAAACCGAATCTTCACAA+AGG | 0.688327 | 4_2:-52159395 | Msa0606050:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAGAACT+AGG | - | chr4_2:52156782-52156801 | Msa0606050:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAAGAACTA+GGG | - | chr4_2:52156783-52156802 | Msa0606050:three_prime_UTR | 10.0% |
| !!! | TATTATCAATTTAGTTTTAT+AGG | - | chr4_2:52157049-52157068 | Msa0606050:exon | 10.0% |
| !!! | CAATTAAAAAAAATTGATTT+GGG | + | chr4_2:52157085-52157104 | None:intergenic | 10.0% |
| !! | ACAATTAAAAAAAATTGATT+TGG | + | chr4_2:52157086-52157105 | None:intergenic | 10.0% |
| !!! | ATTTATTCTTTTTATATGAT+AGG | - | chr4_2:52158526-52158545 | Msa0606050:intron | 10.0% |
| !! | TTTGAATATTATTAAAAAAC+AGG | - | chr4_2:52159084-52159103 | Msa0606050:intron | 10.0% |
| !!! | TTATCTATGTGTTATTATAT+AGG | - | chr4_2:52157354-52157373 | Msa0606050:intron | 15.0% |
| !!! | TTGTAATATTTTATGGTATA+TGG | - | chr4_2:52157384-52157403 | Msa0606050:intron | 15.0% |
| !! | ATAAAAGATGCAAAAATAAT+TGG | + | chr4_2:52157788-52157807 | None:intergenic | 15.0% |
| !!! | TTATTTTTGCATCTTTTATT+AGG | - | chr4_2:52157789-52157808 | Msa0606050:intron | 15.0% |
| !! | AAAAACAAGTTATATTAGAA+TGG | + | chr4_2:52157969-52157988 | None:intergenic | 15.0% |
| !!! | AATATTTTAGATATATCTGT+CGG | - | chr4_2:52158034-52158053 | Msa0606050:intron | 15.0% |
| !!! | TTTTCATATTTAAGTATTTC+AGG | - | chr4_2:52159325-52159344 | Msa0606050:intron | 15.0% |
| !! | TTTCATATTTAAGTATTTCA+GGG | - | chr4_2:52159326-52159345 | Msa0606050:intron | 15.0% |
| !!! | TATATCATTTTGTTCATCAT+CGG | + | chr4_2:52157197-52157216 | None:intergenic | 20.0% |
| !! | TGGTTTGATAAATATGAATA+AGG | - | chr4_2:52157698-52157717 | Msa0606050:intron | 20.0% |
| !! | TTTATATGTGAAACTCATTA+TGG | - | chr4_2:52157942-52157961 | Msa0606050:CDS | 20.0% |
| !! | AAGAAACATTCTTTAAACAA+TGG | + | chr4_2:52158232-52158251 | None:intergenic | 20.0% |
| !! | ATAAATGCTGGAAATATTAT+GGG | + | chr4_2:52158512-52158531 | None:intergenic | 20.0% |
| !! | AATAAATGCTGGAAATATTA+TGG | + | chr4_2:52158513-52158532 | None:intergenic | 20.0% |
| !! | CATATAAAAAGAATAAATGC+TGG | + | chr4_2:52158524-52158543 | None:intergenic | 20.0% |
| !!! | TAATTTCTTACTCTTTGTTT+GGG | + | chr4_2:52158663-52158682 | None:intergenic | 20.0% |
| !! | CAATAGATATATGAAGAAAA+AGG | + | chr4_2:52158689-52158708 | None:intergenic | 20.0% |
| !! | AATACTTTAAATGAAAACTC+TGG | - | chr4_2:52158759-52158778 | Msa0606050:intron | 20.0% |
| !!! | GAAATTAATATGTCAGTTTT+AGG | + | chr4_2:52158951-52158970 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAAAAACAGAAGA+TGG | + | chr4_2:52159292-52159311 | None:intergenic | 20.0% |
| !! | ACAGATTTAATTCAAGTATT+CGG | + | chr4_2:52159385-52159404 | None:intergenic | 20.0% |
| !! | AGATAATAGTTTCACATAAT+TGG | - | chr4_2:52159516-52159535 | Msa0606050:five_prime_UTR | 20.0% |
| ! | AAATAGAGTTGAAGTAAAGA+AGG | + | chr4_2:52156939-52156958 | None:intergenic | 25.0% |
| !!! | TGTGAGTGTTTTTATAGTTA+AGG | - | chr4_2:52157145-52157164 | Msa0606050:CDS | 25.0% |
| !!! | GTGAGTGTTTTTATAGTTAA+GGG | - | chr4_2:52157146-52157165 | Msa0606050:CDS | 25.0% |
| !!! | TGAGTGTTTTTATAGTTAAG+GGG | - | chr4_2:52157147-52157166 | Msa0606050:CDS | 25.0% |
| ! | CATATAAATATACCTTCTGA+CGG | + | chr4_2:52157930-52157949 | None:intergenic | 25.0% |
| ! | CAATGCTATACAACTAATAT+TGG | + | chr4_2:52158002-52158021 | None:intergenic | 25.0% |
| ! | AACAAAAGGCAGAAAATTAT+GGG | + | chr4_2:52158322-52158341 | None:intergenic | 25.0% |
| ! | AAACAAAAGGCAGAAAATTA+TGG | + | chr4_2:52158323-52158342 | None:intergenic | 25.0% |
| ! | AGAAAACAATCAAAGCTTAA+TGG | + | chr4_2:52158589-52158608 | None:intergenic | 25.0% |
| !! | AATTTCTTACTCTTTGTTTG+GGG | + | chr4_2:52158662-52158681 | None:intergenic | 25.0% |
| ! | GTAATTTCTTACTCTTTGTT+TGG | + | chr4_2:52158664-52158683 | None:intergenic | 25.0% |
| !!! | TTATATTTTAGAGTACACCA+GGG | - | chr4_2:52158845-52158864 | Msa0606050:intron | 25.0% |
| !! | ATTTTCCCACAATTTATGAA+CGG | - | chr4_2:52158871-52158890 | Msa0606050:intron | 25.0% |
| !!! | AACTTTTTCAAAGGTTTGTT+TGG | - | chr4_2:52159032-52159051 | Msa0606050:intron | 25.0% |
| ! | ATATTCAAAACGTTCAACTT+GGG | + | chr4_2:52159073-52159092 | None:intergenic | 25.0% |
| ! | AATATTCAAAACGTTCAACT+TGG | + | chr4_2:52159074-52159093 | None:intergenic | 25.0% |
| ! | ATAACAAATCTAACTATCCT+TGG | + | chr4_2:52159265-52159284 | None:intergenic | 25.0% |
| ! | AAACAGTTTGAATTAGATGA+AGG | + | chr4_2:52159411-52159430 | None:intergenic | 25.0% |
| ! | TATTATCTTCACATCATTTC+CGG | + | chr4_2:52159504-52159523 | None:intergenic | 25.0% |
| !! | AAAAAGAACTAGGGTTTTGT+AGG | - | chr4_2:52156792-52156811 | Msa0606050:three_prime_UTR | 30.0% |
| ! | AAGTTTAAGGTCAGTGATTT+AGG | + | chr4_2:52156894-52156913 | None:intergenic | 30.0% |
| ! | GAAGATTCGGTTTAAGTTTA+AGG | + | chr4_2:52156907-52156926 | None:intergenic | 30.0% |
| AATTGTTTCATGAGCTTAGA+AGG | - | chr4_2:52157100-52157119 | Msa0606050:CDS | 30.0% | |
| !! | AGAAGGTACTGATTTAATTG+AGG | - | chr4_2:52157117-52157136 | Msa0606050:CDS | 30.0% |
| !! | GAAGGTACTGATTTAATTGA+GGG | - | chr4_2:52157118-52157137 | Msa0606050:CDS | 30.0% |
| AGAGTTGTAGTCATTGAAAT+AGG | - | chr4_2:52157502-52157521 | Msa0606050:intron | 30.0% | |
| !!! | CTGATTTTTTGATGCACATA+AGG | - | chr4_2:52157563-52157582 | Msa0606050:intron | 30.0% |
| ! | TTTTGATGCACATAAGGAAA+TGG | - | chr4_2:52157569-52157588 | Msa0606050:intron | 30.0% |
| TTTGATGCACATAAGGAAAT+GGG | - | chr4_2:52157570-52157589 | Msa0606050:intron | 30.0% | |
| !! | TTTATTAGGCGTTAGTTTGT+TGG | - | chr4_2:52157803-52157822 | Msa0606050:intron | 30.0% |
| ! | TATATCTGTCGGTTGTTATT+AGG | - | chr4_2:52158045-52158064 | Msa0606050:intron | 30.0% |
| ! | ATATCTGTCGGTTGTTATTA+GGG | - | chr4_2:52158046-52158065 | Msa0606050:intron | 30.0% |
| !! | TTCTTTCTGAGGTAAACAAA+AGG | + | chr4_2:52158336-52158355 | None:intergenic | 30.0% |
| TATTAACCTCCTCAATTTGT+GGG | + | chr4_2:52158437-52158456 | None:intergenic | 30.0% | |
| ATATTAACCTCCTCAATTTG+TGG | + | chr4_2:52158438-52158457 | None:intergenic | 30.0% | |
| TGAGGAGGTTAATATCTTTA+AGG | - | chr4_2:52158443-52158462 | Msa0606050:intron | 30.0% | |
| AAAATGAACAGATTCAGCAT+AGG | + | chr4_2:52158807-52158826 | None:intergenic | 30.0% | |
| ! | TCTGTTCATTTTGCAATATC+TGG | - | chr4_2:52158815-52158834 | Msa0606050:intron | 30.0% |
| !!! | GTTATATTTTAGAGTACACC+AGG | - | chr4_2:52158844-52158863 | Msa0606050:intron | 30.0% |
| ! | TTTTCCCACAATTTATGAAC+GGG | - | chr4_2:52158872-52158891 | Msa0606050:intron | 30.0% |
| !!! | TATCATGTGCTCTTTGTTTT+TGG | - | chr4_2:52158904-52158923 | Msa0606050:intron | 30.0% |
| !!! | ATCATGTGCTCTTTGTTTTT+GGG | - | chr4_2:52158905-52158924 | Msa0606050:intron | 30.0% |
| !!! | TGTGCTTTGAACTTTTTCAA+AGG | - | chr4_2:52159023-52159042 | Msa0606050:intron | 30.0% |
| AAAAACAGGACCAGATAATT+TGG | - | chr4_2:52159098-52159117 | Msa0606050:intron | 30.0% | |
| !! | TTCAGGTTTTCCAAATTATC+TGG | + | chr4_2:52159111-52159130 | None:intergenic | 30.0% |
| ! | ATCATTTTCTTCTTGTACAG+TGG | + | chr4_2:52159187-52159206 | None:intergenic | 30.0% |
| !! | TAATTCAAACTGTTTCTGCT+TGG | - | chr4_2:52159416-52159435 | Msa0606050:five_prime_UTR | 30.0% |
| ! | CTGAAACCAAAAAAGTTTTC+CGG | - | chr4_2:52159482-52159501 | Msa0606050:five_prime_UTR | 30.0% |
| !!! | TCATTTCCGGAAAACTTTTT+TGG | + | chr4_2:52159491-52159510 | None:intergenic | 30.0% |
| !! | AGGGTTTTGTAGGTATAAGA+AGG | - | chr4_2:52156802-52156821 | Msa0606050:three_prime_UTR | 35.0% |
| !! | GGGTTTTGTAGGTATAAGAA+GGG | - | chr4_2:52156803-52156822 | Msa0606050:three_prime_UTR | 35.0% |
| CTTAAACCGAATCTTCACAA+AGG | - | chr4_2:52156911-52156930 | Msa0606050:three_prime_UTR | 35.0% | |
| ! | AAGGTACCTTTGTGAAGATT+CGG | + | chr4_2:52156920-52156939 | None:intergenic | 35.0% |
| !!! | TCTTCTGAGATTTTTCTGTG+CGG | - | chr4_2:52157225-52157244 | Msa0606050:intron | 35.0% |
| TCTGTGCGGAAGAAAATTAT+TGG | - | chr4_2:52157239-52157258 | Msa0606050:intron | 35.0% | |
| TGTGTGAGCTGAATTTAACT+TGG | - | chr4_2:52157424-52157443 | Msa0606050:intron | 35.0% | |
| CACATAAGGAAATGGGATTT+AGG | - | chr4_2:52157577-52157596 | Msa0606050:intron | 35.0% | |
| CACATGAACATGTCATGAAA+AGG | + | chr4_2:52157680-52157699 | None:intergenic | 35.0% | |
| ! | CTTTTCATGACATGTTCATG+TGG | - | chr4_2:52157678-52157697 | Msa0606050:CDS | 35.0% |
| ! | GACTTTCTTCTCTGTAGTTT+TGG | - | chr4_2:52157760-52157779 | Msa0606050:intron | 35.0% |
| TTTCACGATTCATCTGAGAA+AGG | + | chr4_2:52157862-52157881 | None:intergenic | 35.0% | |
| !! | TCGTGAAAAGTTGATGAAGA+TGG | - | chr4_2:52157874-52157893 | Msa0606050:CDS | 35.0% |
| CAAGAATTCATGTCAGCATA+TGG | + | chr4_2:52158086-52158105 | None:intergenic | 35.0% | |
| ACACACTCGAATATGCTTAA+GGG | + | chr4_2:52158140-52158159 | None:intergenic | 35.0% | |
| ! | AGGAATTGTGAAGTTTTGCT+TGG | + | chr4_2:52158163-52158182 | None:intergenic | 35.0% |
| TCAGAGTAAAAGAAAGAACG+AGG | + | chr4_2:52158183-52158202 | None:intergenic | 35.0% | |
| TGTTTACCTCAGAAAGAAGA+AGG | - | chr4_2:52158338-52158357 | Msa0606050:intron | 35.0% | |
| CAACAACTACAGATGACAAA+AGG | - | chr4_2:52158373-52158392 | Msa0606050:intron | 35.0% | |
| ! | TATGGGCTGATATTACCTTT+GGG | + | chr4_2:52158495-52158514 | None:intergenic | 35.0% |
| ! | TTATGGGCTGATATTACCTT+TGG | + | chr4_2:52158496-52158515 | None:intergenic | 35.0% |
| ! | CTAATTGGTGGATAATGCTA+GGG | + | chr4_2:52159000-52159019 | None:intergenic | 35.0% |
| GTTCAAAGCACATACCTAAT+TGG | + | chr4_2:52159015-52159034 | None:intergenic | 35.0% | |
| ATTGTTCAGCTATCTTCTTC+AGG | + | chr4_2:52159128-52159147 | None:intergenic | 35.0% | |
| CTTGATTTCATCCAACTCTT+TGG | - | chr4_2:52159444-52159463 | Msa0606050:five_prime_UTR | 35.0% | |
| ACTACACGAGAGAGAAGATA+AGG | + | chr4_2:52156830-52156849 | None:intergenic | 40.0% | |
| AGACTCAGTGTGAAGAAGAA+CGG | + | chr4_2:52156854-52156873 | None:intergenic | 40.0% | |
| ! | GTCAGTGATTTAGGACAAAG+GGG | + | chr4_2:52156885-52156904 | None:intergenic | 40.0% |
| ! | GGTCAGTGATTTAGGACAAA+GGG | + | chr4_2:52156886-52156905 | None:intergenic | 40.0% |
| ! | AGGTCAGTGATTTAGGACAA+AGG | + | chr4_2:52156887-52156906 | None:intergenic | 40.0% |
| ATTATTGGAGACCTGAACTG+AGG | - | chr4_2:52157254-52157273 | Msa0606050:intron | 40.0% | |
| !! | GAAAAGTTGATGAAGATGGC+CGG | - | chr4_2:52157878-52157897 | Msa0606050:CDS | 40.0% |
| GAATATGCTTAAGGGGAATG+GGG | + | chr4_2:52158132-52158151 | None:intergenic | 40.0% | |
| CGAATATGCTTAAGGGGAAT+GGG | + | chr4_2:52158133-52158152 | None:intergenic | 40.0% | |
| TCGAATATGCTTAAGGGGAA+TGG | + | chr4_2:52158134-52158153 | None:intergenic | 40.0% | |
| CACACTCGAATATGCTTAAG+GGG | + | chr4_2:52158139-52158158 | None:intergenic | 40.0% | |
| GACACACTCGAATATGCTTA+AGG | + | chr4_2:52158141-52158160 | None:intergenic | 40.0% | |
| TTATGGGACAACTCAACTCT+TGG | + | chr4_2:52158306-52158325 | None:intergenic | 40.0% | |
| TGTAGTTGTTGTCTTGTGGA+CGG | + | chr4_2:52158364-52158383 | None:intergenic | 40.0% | |
| CATCTGTAGTTGTTGTCTTG+TGG | + | chr4_2:52158368-52158387 | None:intergenic | 40.0% | |
| GTTCACACCTATTCTCTTCA+GGG | + | chr4_2:52158409-52158428 | None:intergenic | 40.0% | |
| ATCCAGTTCTTAAACCCCAA+AGG | - | chr4_2:52158477-52158496 | Msa0606050:intron | 40.0% | |
| !! | TACCTTTGGGGTTTAAGAAC+TGG | + | chr4_2:52158482-52158501 | None:intergenic | 40.0% |
| ! | ATGGGCTGATATTACCTTTG+GGG | + | chr4_2:52158494-52158513 | None:intergenic | 40.0% |
| GTCCATTGCTGCTAATACAT+GGG | - | chr4_2:52158622-52158641 | Msa0606050:intron | 40.0% | |
| AACCCATGTATTAGCAGCAA+TGG | + | chr4_2:52158627-52158646 | None:intergenic | 40.0% | |
| ! | GCTAATACATGGGTTGTTAG+TGG | - | chr4_2:52158632-52158651 | Msa0606050:intron | 40.0% |
| AATTGTGGGAAAATATGCCC+TGG | + | chr4_2:52158865-52158884 | None:intergenic | 40.0% | |
| CTAGCCCGTTCATAAATTGT+GGG | + | chr4_2:52158879-52158898 | None:intergenic | 40.0% | |
| TCTAGCCCGTTCATAAATTG+TGG | + | chr4_2:52158880-52158899 | None:intergenic | 40.0% | |
| TTTCACTTCTACAGAGTTGC+AGG | - | chr4_2:52158967-52158986 | Msa0606050:intron | 40.0% | |
| ! | CCTAATTGGTGGATAATGCT+AGG | + | chr4_2:52159001-52159020 | None:intergenic | 40.0% |
| CCTAGCATTATCCACCAATT+AGG | - | chr4_2:52158998-52159017 | Msa0606050:intron | 40.0% | |
| CAAAGCACATACCTAATTGG+TGG | + | chr4_2:52159012-52159031 | None:intergenic | 40.0% | |
| TCAAAACGTTCAACTTGGGT+AGG | + | chr4_2:52159069-52159088 | None:intergenic | 40.0% | |
| GATTTCATCCAACTCTTTGG+TGG | - | chr4_2:52159447-52159466 | Msa0606050:five_prime_UTR | 40.0% | |
| TCTTCTTCACACTGAGTCTG+AGG | - | chr4_2:52156855-52156874 | Msa0606050:three_prime_UTR | 45.0% | |
| TGAAACAGTCTCCTCAGTTC+AGG | + | chr4_2:52157268-52157287 | None:intergenic | 45.0% | |
| GAAGAAAGTCAAGACACAGC+AGG | + | chr4_2:52157750-52157769 | None:intergenic | 45.0% | |
| CGTTCACACCTATTCTCTTC+AGG | + | chr4_2:52158410-52158429 | None:intergenic | 45.0% | |
| AACCTCCTCAATTTGTGGGA+TGG | + | chr4_2:52158433-52158452 | None:intergenic | 45.0% | |
| CGTCCATTGCTGCTAATACA+TGG | - | chr4_2:52158621-52158640 | Msa0606050:intron | 45.0% | |
| AGCTGAACAATTCCAGAAGC+AGG | - | chr4_2:52159137-52159156 | Msa0606050:intron | 45.0% | |
| CTGTCTCAAAAGTCTCTCCT+GGG | + | chr4_2:52159230-52159249 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTGTAATATTTTA+TGG | - | chr4_2:52157377-52157396 | Msa0606050:intron | 5.0% |
| TTCTGTTCGAACCGGAGGAA+AGG | - | chr4_2:52157901-52157920 | Msa0606050:CDS | 50.0% | |
| TCTGTTCGAACCGGAGGAAA+GGG | - | chr4_2:52157902-52157921 | Msa0606050:CDS | 50.0% | |
| ! | CAGAGCACCCTGAAGAGAAT+AGG | - | chr4_2:52158399-52158418 | Msa0606050:CDS | 50.0% |
| GAACGCCATCCCACAAATTG+AGG | - | chr4_2:52158425-52158444 | Msa0606050:CDS | 50.0% | |
| GCTGTCTCAAAAGTCTCTCC+TGG | + | chr4_2:52159231-52159250 | None:intergenic | 50.0% | |
| !!! | GACTTTTGAGACAGCTGCTG+AGG | - | chr4_2:52159236-52159255 | Msa0606050:intron | 50.0% |
| !!! | TTTTGAGACAGCTGCTGAGG+AGG | - | chr4_2:52159239-52159258 | Msa0606050:intron | 50.0% |
| !! | TCCAACTCTTTGGTGGTGTC+TGG | - | chr4_2:52159454-52159473 | Msa0606050:five_prime_UTR | 50.0% |
| ACCAGACACCACCAAAGAGT+TGG | + | chr4_2:52159458-52159477 | None:intergenic | 50.0% | |
| ! | ATGGCCGGTTCTGTTCGAAC+CGG | - | chr4_2:52157893-52157912 | Msa0606050:CDS | 55.0% |
| ! | TCCTCCGGTTCGAACAGAAC+CGG | + | chr4_2:52157900-52157919 | None:intergenic | 55.0% |
| TCTGACGGTACCCTTTCCTC+CGG | + | chr4_2:52157915-52157934 | None:intergenic | 55.0% | |
| !! | GAGGAAAGGGTACCGTCAGA+AGG | - | chr4_2:52157915-52157934 | Msa0606050:CDS | 55.0% |
| GGACGGCCTTCTTCTTTCTG+AGG | + | chr4_2:52158347-52158366 | None:intergenic | 55.0% | |
| CGCCATCCCACAAATTGAGG+AGG | - | chr4_2:52158428-52158447 | Msa0606050:CDS | 55.0% | |
| GCAGCAATGGACGCTTGAAC+TGG | + | chr4_2:52158614-52158633 | None:intergenic | 55.0% | |
| TCTCTCCTGGGACAAGCTCT+GGG | + | chr4_2:52159218-52159237 | None:intergenic | 55.0% | |
| CTGCTTCAGGAGCCTGCTTC+TGG | + | chr4_2:52159152-52159171 | None:intergenic | 60.0% | |
| CAGAAGCAGGCTCCTGAAGC+AGG | - | chr4_2:52159150-52159169 | Msa0606050:intron | 60.0% | |
| GCTGAACCAGCACCTGCTTC+AGG | + | chr4_2:52159165-52159184 | None:intergenic | 60.0% | |
| GATGTCCCAGAGCTTGTCCC+AGG | - | chr4_2:52159210-52159229 | Msa0606050:intron | 60.0% | |
| GTCTCTCCTGGGACAAGCTC+TGG | + | chr4_2:52159219-52159238 | None:intergenic | 60.0% | |
| ! | GCCGGTTCTGTTCGAACCGG+AGG | - | chr4_2:52157896-52157915 | Msa0606050:CDS | 65.0% |
| CAGGCTCCTGAAGCAGGTGC+TGG | - | chr4_2:52159156-52159175 | Msa0606050:intron | 65.0% | |
| GACAGCTGCTGAGGAGGCCA+AGG | - | chr4_2:52159245-52159264 | Msa0606050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 52156747 | 52159581 | 52156747 | ID=Msa0606050;Name=Msa0606050 |
| chr4_2 | mRNA | 52156747 | 52159581 | 52156747 | ID=Msa0606050-mRNA-1;Parent=Msa0606050;Name=Msa0606050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186|1|1|1|0.8|0.83|6|306|160 |
| chr4_2 | exon | 52156747 | 52157222 | 52156747 | ID=Msa0606050-mRNA-1:exon:12655;Parent=Msa0606050-mRNA-1 |
| chr4_2 | exon | 52157309 | 52157347 | 52157309 | ID=Msa0606050-mRNA-1:exon:12654;Parent=Msa0606050-mRNA-1 |
| chr4_2 | exon | 52157657 | 52157713 | 52157657 | ID=Msa0606050-mRNA-1:exon:12653;Parent=Msa0606050-mRNA-1 |
| chr4_2 | exon | 52157830 | 52157978 | 52157830 | ID=Msa0606050-mRNA-1:exon:12652;Parent=Msa0606050-mRNA-1 |
| chr4_2 | exon | 52158392 | 52158459 | 52158392 | ID=Msa0606050-mRNA-1:exon:12651;Parent=Msa0606050-mRNA-1 |
| chr4_2 | exon | 52159396 | 52159581 | 52159396 | ID=Msa0606050-mRNA-1:exon:12650;Parent=Msa0606050-mRNA-1 |
| chr4_2 | five_prime_UTR | 52159396 | 52159581 | 52159396 | ID=Msa0606050-mRNA-1:five_prime_utr;Parent=Msa0606050-mRNA-1 |
| chr4_2 | CDS | 52158392 | 52158459 | 52158392 | ID=Msa0606050-mRNA-1:cds;Parent=Msa0606050-mRNA-1 |
| chr4_2 | CDS | 52157830 | 52157978 | 52157830 | ID=Msa0606050-mRNA-1:cds;Parent=Msa0606050-mRNA-1 |
| chr4_2 | CDS | 52157657 | 52157713 | 52157657 | ID=Msa0606050-mRNA-1:cds;Parent=Msa0606050-mRNA-1 |
| chr4_2 | CDS | 52157309 | 52157347 | 52157309 | ID=Msa0606050-mRNA-1:cds;Parent=Msa0606050-mRNA-1 |
| chr4_2 | CDS | 52157053 | 52157222 | 52157053 | ID=Msa0606050-mRNA-1:cds;Parent=Msa0606050-mRNA-1 |
| chr4_2 | three_prime_UTR | 52156747 | 52157052 | 52156747 | ID=Msa0606050-mRNA-1:three_prime_utr;Parent=Msa0606050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
