Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646990 | XP_003606991.2 | 98.750 | 160 | 2 | 0 | 1 | 160 | 1 | 160 | 8.05e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646990 | sp|Q9SMW7|BTF3_ARATH | 86.755 | 151 | 18 | 2 | 1 | 150 | 1 | 150 | 1.17e-90 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606050 | Msa0646990 | 0.896983 | 2.183968e-76 | -8.615850e-47 |
| Msa0646960 | Msa0646990 | 0.810648 | 1.038214e-50 | -8.615850e-47 |
| Msa0646990 | Msa1079920 | 0.816764 | 4.673586e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646990 | MtrunA17_Chr4g0035481 | 98.701 | 154 | 2 | 0 | 7 | 160 | 1 | 154 | 8.82e-110 | 308 |
| Msa0646990 | MtrunA17_Chr3g0084861 | 89.474 | 152 | 16 | 0 | 7 | 158 | 1 | 152 | 4.45e-98 | 279 |
| Msa0646990 | MtrunA17_Chr3g0084831 | 72.593 | 135 | 19 | 1 | 24 | 158 | 6 | 122 | 2.14e-63 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646990 | AT1G17880.1 | 86.755 | 151 | 18 | 2 | 1 | 150 | 1 | 150 | 1.19e-91 | 263 |
| Msa0646990 | AT1G73230.1 | 85.987 | 157 | 21 | 1 | 1 | 156 | 1 | 157 | 6.67e-87 | 251 |
Find 73 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCAGGAGCCTGCTTC+TGG | 0.192683 | 4_3:+52970252 | None:intergenic |
| GAAGATTCGGTTTAAGTTTA+AGG | 0.198576 | 4_3:+52972498 | None:intergenic |
| TATTATCTTCACATCATTTC+CGG | 0.213019 | 4_3:+52969898 | None:intergenic |
| TGAGGAGGTCAATATCTTTA+AGG | 0.219626 | 4_3:-52970958 | Msa0646990:CDS |
| AAGTTTAAGGTCAGTGATTT+AGG | 0.220905 | 4_3:+52972511 | None:intergenic |
| TAATTTCTTACTCTTTGTTT+GGG | 0.224790 | 4_3:+52970741 | None:intergenic |
| GTAATTTCTTACTCTTTGTT+TGG | 0.245420 | 4_3:+52970740 | None:intergenic |
| CTTGATTTCATCCAACTCTT+TGG | 0.246737 | 4_3:-52969955 | Msa0646990:three_prime_UTR |
| AGATAATAGTTTCACATAAT+TGG | 0.278329 | 4_3:-52969883 | Msa0646990:three_prime_UTR |
| CATTCACACCTATTCTCTTC+AGG | 0.292092 | 4_3:+52970994 | None:intergenic |
| ATTGTTCAGCTATCTTCTTC+AGG | 0.297553 | 4_3:+52970276 | None:intergenic |
| TTTCACTTCTACAGAGTTGC+AGG | 0.308571 | 4_3:-52970434 | Msa0646990:intron |
| ACAGATTTAATTCAAGTATT+CGG | 0.319393 | 4_3:+52970017 | None:intergenic |
| GTTCAAAGCACATACCTAAT+TGG | 0.327309 | 4_3:+52970389 | None:intergenic |
| GCTGAACCAGCACCTGCTTC+AGG | 0.334925 | 4_3:+52970239 | None:intergenic |
| GTCTCTCCTGGGACAAGCTC+TGG | 0.335105 | 4_3:+52970185 | None:intergenic |
| CCTAGCATTATCCACCAATT+AGG | 0.352096 | 4_3:-52970403 | Msa0646990:intron |
| TCCAACTCTTTGGTGGTGTC+TGG | 0.356941 | 4_3:-52969945 | Msa0646990:three_prime_UTR |
| TACCTTTGGGGTTTAAGAAC+TGG | 0.359158 | 4_3:+52970922 | None:intergenic |
| AAGGTACCTTTGTGAAGATT+CGG | 0.407308 | 4_3:+52972485 | None:intergenic |
| CGTCCATTGCTGCTAATACA+TGG | 0.419485 | 4_3:-52970780 | Msa0646990:CDS |
| GATTTCATCCAACTCTTTGG+TGG | 0.427517 | 4_3:-52969952 | Msa0646990:three_prime_UTR |
| GCTGTCTCAAAAGTCTCTCC+TGG | 0.443808 | 4_3:+52970173 | None:intergenic |
| ATTCACACCTATTCTCTTCA+GGG | 0.451011 | 4_3:+52970995 | None:intergenic |
| TATTGACCTCCTCAATTTGT+GGG | 0.452604 | 4_3:+52970967 | None:intergenic |
| ATGGGCTGATATTACCTTTG+GGG | 0.456873 | 4_3:+52970910 | None:intergenic |
| CAGAAGCAGGCTCCTGAAGC+AGG | 0.458056 | 4_3:-52970251 | Msa0646990:CDS |
| GGTCAGTGATTTAGGACAAA+GGG | 0.460327 | 4_3:+52972519 | None:intergenic |
| TCCTCCGGTTCGAACAGAAC+CGG | 0.461978 | 4_3:+52971507 | None:intergenic |
| CAGAGCACCCTGAAGAGAAT+AGG | 0.468639 | 4_3:-52971002 | Msa0646990:CDS |
| ATAACAAATCTAACTATCCT+TGG | 0.472981 | 4_3:+52970139 | None:intergenic |
| TGTTTACCTCAGAAAGAAGA+AGG | 0.477565 | 4_3:-52971063 | Msa0646990:intron |
| TCTGTTCGAACCGGAGGAAA+GGG | 0.482236 | 4_3:-52971502 | Msa0646990:CDS |
| AAACAGTTTGAATTAGATGA+AGG | 0.483183 | 4_3:+52969991 | None:intergenic |
| TTTCATATTTAAGTATTTCA+GGG | 0.489459 | 4_3:-52970075 | Msa0646990:three_prime_UTR |
| CAGGCTCCTGAAGCAGGTGC+TGG | 0.494992 | 4_3:-52970245 | Msa0646990:CDS |
| TAATTCAAACTGTTTCTGCT+TGG | 0.495425 | 4_3:-52969983 | Msa0646990:three_prime_UTR |
| AGCTGAACAATTCCAGAAGC+AGG | 0.497000 | 4_3:-52970264 | Msa0646990:CDS |
| CCTAATTGGTGGATAATGCT+AGG | 0.497579 | 4_3:+52970403 | None:intergenic |
| ATATTGACCTCCTCAATTTG+TGG | 0.501827 | 4_3:+52970966 | None:intergenic |
| CAACAACTACAGATGACAAA+AGG | 0.502653 | 4_3:-52971028 | Msa0646990:CDS |
| GATGTCCCAGAGCTTGTCCC+AGG | 0.514432 | 4_3:-52970191 | Msa0646990:CDS |
| GACCTCCTCAATTTGTGGGA+TGG | 0.524360 | 4_3:+52970971 | None:intergenic |
| CATCTGTAGTTGTTGTCTTG+TGG | 0.525038 | 4_3:+52971036 | None:intergenic |
| TTCTGTTCGAACCGGAGGAA+AGG | 0.525397 | 4_3:-52971503 | Msa0646990:CDS |
| GCTAATACATGGGTTGTTAG+TGG | 0.526432 | 4_3:-52970769 | Msa0646990:CDS |
| TCTCTCCTGGGACAAGCTCT+GGG | 0.528395 | 4_3:+52970186 | None:intergenic |
| TCGAGGGATTCATTGTGTCT+AGG | 0.531688 | 4_3:+52969837 | None:intergenic |
| GAATGCCATCCCACAAATTG+AGG | 0.534495 | 4_3:-52970976 | Msa0646990:CDS |
| AACCCATGTATTAGCAGCAA+TGG | 0.539996 | 4_3:+52970777 | None:intergenic |
| GACAGCTGCTGAGGAGGCCA+AGG | 0.540301 | 4_3:-52970156 | Msa0646990:CDS |
| TCTGACGGTACCCTTTCCTC+CGG | 0.545452 | 4_3:+52971492 | None:intergenic |
| TCTTCTTCACACTGAGTCTG+AGG | 0.552196 | 4_3:-52972547 | Msa0646990:five_prime_UTR |
| AATTTCTTACTCTTTGTTTG+GGG | 0.553423 | 4_3:+52970742 | None:intergenic |
| ACCAGACACCACCAAAGAGT+TGG | 0.556120 | 4_3:+52969944 | None:intergenic |
| TGTAGTTGTTGTCTTGTGGA+CGG | 0.561453 | 4_3:+52971040 | None:intergenic |
| CTAATTGGTGGATAATGCTA+GGG | 0.563275 | 4_3:+52970404 | None:intergenic |
| ATGGCCGGTTCTGTTCGAAC+CGG | 0.568678 | 4_3:-52971511 | Msa0646990:CDS |
| GCCGGTTCTGTTCGAACCGG+AGG | 0.569814 | 4_3:-52971508 | Msa0646990:CDS |
| CTGTCTCAAAAGTCTCTCCT+GGG | 0.571093 | 4_3:+52970174 | None:intergenic |
| GTCCATTGCTGCTAATACAT+GGG | 0.579320 | 4_3:-52970779 | Msa0646990:CDS |
| ACTACACGAGAGAGAAGATA+AGG | 0.583989 | 4_3:+52972575 | None:intergenic |
| ATCCAGTTCTTAAACCCCAA+AGG | 0.585033 | 4_3:-52970924 | Msa0646990:intron |
| GAAAAGTTGATGAAGATGGC+CGG | 0.594138 | 4_3:-52971526 | Msa0646990:CDS |
| TCGTGAAAAGTTGATGAAGA+TGG | 0.598987 | 4_3:-52971530 | Msa0646990:CDS |
| AGGTCAGTGATTTAGGACAA+AGG | 0.599373 | 4_3:+52972518 | None:intergenic |
| CAAAGCACATACCTAATTGG+TGG | 0.599520 | 4_3:+52970392 | None:intergenic |
| GAGGAAAGGGTACCGTCAGA+AGG | 0.619370 | 4_3:-52971489 | Msa0646990:intron |
| AGACTCAGTGTGAAGAAGAA+CGG | 0.635251 | 4_3:+52972551 | None:intergenic |
| CATATAAATATACCTTCTGA+CGG | 0.639530 | 4_3:+52971477 | None:intergenic |
| TGCCATCCCACAAATTGAGG+AGG | 0.645011 | 4_3:-52970973 | Msa0646990:CDS |
| GTCAGTGATTTAGGACAAAG+GGG | 0.667143 | 4_3:+52972520 | None:intergenic |
| CTTAAACCGAATCTTCACAA+AGG | 0.688327 | 4_3:-52972491 | Msa0646990:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAGAACT+AGG | - | chr4_3:52969871-52969890 | Msa0646990:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAAGAACTA+GGG | - | chr4_3:52969872-52969891 | Msa0646990:three_prime_UTR | 10.0% |
| !!! | TATTATCAATTTAGTTTTAT+AGG | - | chr4_3:52970168-52970187 | Msa0646990:CDS | 10.0% |
| !!! | CAATTAAAAAAAATTGATTT+GGG | + | chr4_3:52970204-52970223 | None:intergenic | 10.0% |
| !! | ACAATTAAAAAAAATTGATT+TGG | + | chr4_3:52970205-52970224 | None:intergenic | 10.0% |
| !!! | ATTTATTCTTTTTATATGAT+AGG | - | chr4_3:52971616-52971635 | Msa0646990:intron | 10.0% |
| !! | TTTGAATATTATTAAAAAAC+AGG | - | chr4_3:52972174-52972193 | Msa0646990:intron | 10.0% |
| !!! | TTATCTATGTGTTATTATAT+AGG | - | chr4_3:52970441-52970460 | Msa0646990:intron | 15.0% |
| !!! | TTGTAATATTTTATGGTATA+TGG | - | chr4_3:52970472-52970491 | Msa0646990:intron | 15.0% |
| !!! | TGTTTTGATAAATATGAATA+AGG | - | chr4_3:52970786-52970805 | Msa0646990:CDS | 15.0% |
| !! | ATAAAAGATGCAAAAATAAT+TGG | + | chr4_3:52970876-52970895 | None:intergenic | 15.0% |
| !!! | TTATTTTTGCATCTTTTATT+AGG | - | chr4_3:52970877-52970896 | Msa0646990:intron | 15.0% |
| !! | AAAAACAAGTTATATTAGAA+TGG | + | chr4_3:52971056-52971075 | None:intergenic | 15.0% |
| !!! | AATATTTTAGATATATCTGT+CGG | - | chr4_3:52971121-52971140 | Msa0646990:intron | 15.0% |
| !!! | GAAATTAATATGTCAATTTT+AGG | + | chr4_3:52972041-52972060 | None:intergenic | 15.0% |
| !!! | TTTTCATATTTAAGTATTTC+AGG | - | chr4_3:52972415-52972434 | Msa0646990:intron | 15.0% |
| !! | TTTCATATTTAAGTATTTCA+GGG | - | chr4_3:52972416-52972435 | Msa0646990:intron | 15.0% |
| !! | TTTATATGTGAAACTCATTA+TGG | - | chr4_3:52971029-52971048 | Msa0646990:CDS | 20.0% |
| !! | AAGAAACATTCTTTAAACAA+TGG | + | chr4_3:52971322-52971341 | None:intergenic | 20.0% |
| !! | ATAAATGCTGGAAATATTAT+GGG | + | chr4_3:52971602-52971621 | None:intergenic | 20.0% |
| !! | AATAAATGCTGGAAATATTA+TGG | + | chr4_3:52971603-52971622 | None:intergenic | 20.0% |
| !! | CATATAAAAAGAATAAATGC+TGG | + | chr4_3:52971614-52971633 | None:intergenic | 20.0% |
| !!! | TAATTTCTTACTCTTTGTTT+GGG | + | chr4_3:52971753-52971772 | None:intergenic | 20.0% |
| !! | CAATAGATATATGAAGAAAA+AGG | + | chr4_3:52971779-52971798 | None:intergenic | 20.0% |
| !! | AATACTTTAAATGAAAACTC+TGG | - | chr4_3:52971849-52971868 | Msa0646990:intron | 20.0% |
| !!! | TTTTGAAAAAAAACAGAAGA+TGG | + | chr4_3:52972382-52972401 | None:intergenic | 20.0% |
| !! | ACAGATTTAATTCAAGTATT+CGG | + | chr4_3:52972477-52972496 | None:intergenic | 20.0% |
| !! | AGATAATAGTTTCACATAAT+TGG | - | chr4_3:52972608-52972627 | Msa0646990:five_prime_UTR | 20.0% |
| ! | AAATAGAGTTGAAGTAAAGA+AGG | + | chr4_3:52970028-52970047 | None:intergenic | 25.0% |
| ! | AACTAAATCGTATGACTTTA+TGG | + | chr4_3:52970548-52970567 | None:intergenic | 25.0% |
| ! | CATATAAATATACCTTCTGA+CGG | + | chr4_3:52971017-52971036 | None:intergenic | 25.0% |
| ! | CAATGCTATACAACTAATAT+TGG | + | chr4_3:52971089-52971108 | None:intergenic | 25.0% |
| ! | AAACAAAAGGCAGAAAATTA+CGG | + | chr4_3:52971413-52971432 | None:intergenic | 25.0% |
| ! | AGAAAACAATCAAAGCTTAA+TGG | + | chr4_3:52971679-52971698 | None:intergenic | 25.0% |
| !! | AATTTCTTACTCTTTGTTTG+GGG | + | chr4_3:52971752-52971771 | None:intergenic | 25.0% |
| ! | GTAATTTCTTACTCTTTGTT+TGG | + | chr4_3:52971754-52971773 | None:intergenic | 25.0% |
| !!! | TTATATTTTAGAGTACACCA+GGG | - | chr4_3:52971935-52971954 | Msa0646990:intron | 25.0% |
| !! | ATTTTCCCACAATTTATGAA+CGG | - | chr4_3:52971961-52971980 | Msa0646990:intron | 25.0% |
| !!! | AACTTTTTCAAAGGTTTGTT+TGG | - | chr4_3:52972122-52972141 | Msa0646990:intron | 25.0% |
| ! | ATATTCAAAACGTTCAACTT+GGG | + | chr4_3:52972163-52972182 | None:intergenic | 25.0% |
| ! | AATATTCAAAACGTTCAACT+TGG | + | chr4_3:52972164-52972183 | None:intergenic | 25.0% |
| ! | ATAACAAATCTAACTATCCT+TGG | + | chr4_3:52972355-52972374 | None:intergenic | 25.0% |
| ! | AAACAGTTTGAATTAGATGA+AGG | + | chr4_3:52972503-52972522 | None:intergenic | 25.0% |
| ! | TATTATCTTCACATCATTTC+CGG | + | chr4_3:52972596-52972615 | None:intergenic | 25.0% |
| !! | AAAAAGAACTAGGGTTTTGT+AGG | - | chr4_3:52969881-52969900 | Msa0646990:three_prime_UTR | 30.0% |
| ! | AAGTTTAAGGTCAGTGATTT+AGG | + | chr4_3:52969983-52970002 | None:intergenic | 30.0% |
| ! | GAAGATTCGGTTTAAGTTTA+AGG | + | chr4_3:52969996-52970015 | None:intergenic | 30.0% |
| AATTGTTTCATGAGCTTAGA+AGG | - | chr4_3:52970219-52970238 | Msa0646990:CDS | 30.0% | |
| AGAGTTGTAGTCATTGAAAT+AGG | - | chr4_3:52970590-52970609 | Msa0646990:intron | 30.0% | |
| !!! | CTGATTTTTTGATGCACATA+AGG | - | chr4_3:52970651-52970670 | Msa0646990:intron | 30.0% |
| ! | TTTTGATGCACATAAGGAAA+TGG | - | chr4_3:52970657-52970676 | Msa0646990:intron | 30.0% |
| TTTGATGCACATAAGGAAAT+GGG | - | chr4_3:52970658-52970677 | Msa0646990:intron | 30.0% | |
| !! | TTTATTAGGCGTTAGTTTGT+TGG | - | chr4_3:52970891-52970910 | Msa0646990:intron | 30.0% |
| ! | TATATCTGTCGGTTGTTATT+AGG | - | chr4_3:52971132-52971151 | Msa0646990:intron | 30.0% |
| ! | ATATCTGTCGGTTGTTATTA+GGG | - | chr4_3:52971133-52971152 | Msa0646990:intron | 30.0% |
| AACAAAAGGCAGAAAATTAC+GGG | + | chr4_3:52971412-52971431 | None:intergenic | 30.0% | |
| !! | TTCTTTCTGAGGTAAACAAA+AGG | + | chr4_3:52971426-52971445 | None:intergenic | 30.0% |
| AAATTGAACAGATTCAGCAT+CGG | + | chr4_3:52971897-52971916 | None:intergenic | 30.0% | |
| TCTGTTCAATTTGCAATATC+TGG | - | chr4_3:52971905-52971924 | Msa0646990:intron | 30.0% | |
| !!! | GTTATATTTTAGAGTACACC+AGG | - | chr4_3:52971934-52971953 | Msa0646990:intron | 30.0% |
| ! | TTTTCCCACAATTTATGAAC+GGG | - | chr4_3:52971962-52971981 | Msa0646990:intron | 30.0% |
| !!! | TATCATGTGCTCTTTGTTTT+TGG | - | chr4_3:52971994-52972013 | Msa0646990:intron | 30.0% |
| !!! | ATCATGTGCTCTTTGTTTTT+GGG | - | chr4_3:52971995-52972014 | Msa0646990:intron | 30.0% |
| !!! | TGTGCTTTGAACTTTTTCAA+AGG | - | chr4_3:52972113-52972132 | Msa0646990:intron | 30.0% |
| AAAAACAGGACCAGATAATT+TGG | - | chr4_3:52972188-52972207 | Msa0646990:intron | 30.0% | |
| !! | TTCAGGTTTTCCAAATTATC+TGG | + | chr4_3:52972201-52972220 | None:intergenic | 30.0% |
| ! | ATCATTTTCTTCTTGTACAG+TGG | + | chr4_3:52972277-52972296 | None:intergenic | 30.0% |
| !! | TAATTCAAACTGTTTCTGCT+TGG | - | chr4_3:52972508-52972527 | Msa0646990:five_prime_UTR | 30.0% |
| ! | CTGAAACCAAAAAAGTTTTC+CGG | - | chr4_3:52972574-52972593 | Msa0646990:five_prime_UTR | 30.0% |
| !!! | TCATTTCCGGAAAACTTTTT+TGG | + | chr4_3:52972583-52972602 | None:intergenic | 30.0% |
| !! | AGGGTTTTGTAGGTATAAGA+AGG | - | chr4_3:52969891-52969910 | Msa0646990:three_prime_UTR | 35.0% |
| !! | GGGTTTTGTAGGTATAAGAA+GGG | - | chr4_3:52969892-52969911 | Msa0646990:three_prime_UTR | 35.0% |
| CTTAAACCGAATCTTCACAA+AGG | - | chr4_3:52970000-52970019 | Msa0646990:three_prime_UTR | 35.0% | |
| ! | AAGGTACCTTTGTGAAGATT+CGG | + | chr4_3:52970009-52970028 | None:intergenic | 35.0% |
| CAACACATCACACAGTAATT+AGG | + | chr4_3:52970114-52970133 | None:intergenic | 35.0% | |
| !! | CTTAGAAGGTACTGAGTTAA+GGG | - | chr4_3:52970233-52970252 | Msa0646990:CDS | 35.0% |
| !! | TTAGAAGGTACTGAGTTAAG+GGG | - | chr4_3:52970234-52970253 | Msa0646990:CDS | 35.0% |
| !!! | TCTTCTGAGATTTTTCTGTG+CGG | - | chr4_3:52970312-52970331 | Msa0646990:intron | 35.0% |
| CTGTGCGGAAGAAAAATTAT+TGG | - | chr4_3:52970327-52970346 | Msa0646990:intron | 35.0% | |
| TGTGTGAGCTGAATTTAACT+TGG | - | chr4_3:52970512-52970531 | Msa0646990:intron | 35.0% | |
| CACATAAGGAAATGGGATTT+AGG | - | chr4_3:52970665-52970684 | Msa0646990:intron | 35.0% | |
| CACATGAACATGTCATGAAA+AGG | + | chr4_3:52970768-52970787 | None:intergenic | 35.0% | |
| ! | GACTTTCTTCTCTGTAGTTT+TGG | - | chr4_3:52970848-52970867 | Msa0646990:intron | 35.0% |
| TTTCACGATTCATCTGAGAA+AGG | + | chr4_3:52970949-52970968 | None:intergenic | 35.0% | |
| !! | TCGTGAAAAGTTGATGAAGA+TGG | - | chr4_3:52970961-52970980 | Msa0646990:CDS | 35.0% |
| CAAGAATTCATGTCAGCATA+TGG | + | chr4_3:52971173-52971192 | None:intergenic | 35.0% | |
| ACACACTCGAATATGCTTAA+GGG | + | chr4_3:52971227-52971246 | None:intergenic | 35.0% | |
| ! | AGGAATTGTGAAGTTTTGCT+TGG | + | chr4_3:52971250-52971269 | None:intergenic | 35.0% |
| TGTTTACCTCAGAAAGAAGA+AGG | - | chr4_3:52971428-52971447 | Msa0646990:intron | 35.0% | |
| CAACAACTACAGATGACAAA+AGG | - | chr4_3:52971463-52971482 | Msa0646990:intron | 35.0% | |
| ATTCACACCTATTCTCTTCA+GGG | + | chr4_3:52971499-52971518 | None:intergenic | 35.0% | |
| TATTGACCTCCTCAATTTGT+GGG | + | chr4_3:52971527-52971546 | None:intergenic | 35.0% | |
| ATATTGACCTCCTCAATTTG+TGG | + | chr4_3:52971528-52971547 | None:intergenic | 35.0% | |
| TGAGGAGGTCAATATCTTTA+AGG | - | chr4_3:52971533-52971552 | Msa0646990:CDS | 35.0% | |
| ! | TATGGGCTGATATTACCTTT+GGG | + | chr4_3:52971585-52971604 | None:intergenic | 35.0% |
| ! | TTATGGGCTGATATTACCTT+TGG | + | chr4_3:52971586-52971605 | None:intergenic | 35.0% |
| ! | CTAATTGGTGGATAATGCTA+GGG | + | chr4_3:52972090-52972109 | None:intergenic | 35.0% |
| GTTCAAAGCACATACCTAAT+TGG | + | chr4_3:52972105-52972124 | None:intergenic | 35.0% | |
| ATTGTTCAGCTATCTTCTTC+AGG | + | chr4_3:52972218-52972237 | None:intergenic | 35.0% | |
| CTTGATTTCATCCAACTCTT+TGG | - | chr4_3:52972536-52972555 | Msa0646990:five_prime_UTR | 35.0% | |
| ACTACACGAGAGAGAAGATA+AGG | + | chr4_3:52969919-52969938 | None:intergenic | 40.0% | |
| AGACTCAGTGTGAAGAAGAA+CGG | + | chr4_3:52969943-52969962 | None:intergenic | 40.0% | |
| ! | GTCAGTGATTTAGGACAAAG+GGG | + | chr4_3:52969974-52969993 | None:intergenic | 40.0% |
| ! | GGTCAGTGATTTAGGACAAA+GGG | + | chr4_3:52969975-52969994 | None:intergenic | 40.0% |
| ! | AGGTCAGTGATTTAGGACAA+AGG | + | chr4_3:52969976-52969995 | None:intergenic | 40.0% |
| !! | GCTTAGAAGGTACTGAGTTA+AGG | - | chr4_3:52970232-52970251 | Msa0646990:CDS | 40.0% |
| ATTATTGGAGACCTGAACTG+AGG | - | chr4_3:52970342-52970361 | Msa0646990:intron | 40.0% | |
| !! | GAAAAGTTGATGAAGATGGC+CGG | - | chr4_3:52970965-52970984 | Msa0646990:CDS | 40.0% |
| GAATATGCTTAAGGGGAATG+GGG | + | chr4_3:52971219-52971238 | None:intergenic | 40.0% | |
| CGAATATGCTTAAGGGGAAT+GGG | + | chr4_3:52971220-52971239 | None:intergenic | 40.0% | |
| TCGAATATGCTTAAGGGGAA+TGG | + | chr4_3:52971221-52971240 | None:intergenic | 40.0% | |
| CACACTCGAATATGCTTAAG+GGG | + | chr4_3:52971226-52971245 | None:intergenic | 40.0% | |
| GACACACTCGAATATGCTTA+AGG | + | chr4_3:52971228-52971247 | None:intergenic | 40.0% | |
| TCAGAGTAGAAGAAAGAACG+AGG | + | chr4_3:52971270-52971289 | None:intergenic | 40.0% | |
| TGTAGTTGTTGTCTTGTGGA+CGG | + | chr4_3:52971454-52971473 | None:intergenic | 40.0% | |
| CATCTGTAGTTGTTGTCTTG+TGG | + | chr4_3:52971458-52971477 | None:intergenic | 40.0% | |
| CATTCACACCTATTCTCTTC+AGG | + | chr4_3:52971500-52971519 | None:intergenic | 40.0% | |
| ATCCAGTTCTTAAACCCCAA+AGG | - | chr4_3:52971567-52971586 | Msa0646990:intron | 40.0% | |
| !! | TACCTTTGGGGTTTAAGAAC+TGG | + | chr4_3:52971572-52971591 | None:intergenic | 40.0% |
| ! | ATGGGCTGATATTACCTTTG+GGG | + | chr4_3:52971584-52971603 | None:intergenic | 40.0% |
| GTCCATTGCTGCTAATACAT+GGG | - | chr4_3:52971712-52971731 | Msa0646990:intron | 40.0% | |
| AACCCATGTATTAGCAGCAA+TGG | + | chr4_3:52971717-52971736 | None:intergenic | 40.0% | |
| ! | GCTAATACATGGGTTGTTAG+TGG | - | chr4_3:52971722-52971741 | Msa0646990:intron | 40.0% |
| AATTGTGGGAAAATATGCCC+TGG | + | chr4_3:52971955-52971974 | None:intergenic | 40.0% | |
| CTAGCCCGTTCATAAATTGT+GGG | + | chr4_3:52971969-52971988 | None:intergenic | 40.0% | |
| TCTAGCCCGTTCATAAATTG+TGG | + | chr4_3:52971970-52971989 | None:intergenic | 40.0% | |
| TTTCACTTCTACAGAGTTGC+AGG | - | chr4_3:52972057-52972076 | Msa0646990:intron | 40.0% | |
| ! | CCTAATTGGTGGATAATGCT+AGG | + | chr4_3:52972091-52972110 | None:intergenic | 40.0% |
| CCTAGCATTATCCACCAATT+AGG | - | chr4_3:52972088-52972107 | Msa0646990:intron | 40.0% | |
| CAAAGCACATACCTAATTGG+TGG | + | chr4_3:52972102-52972121 | None:intergenic | 40.0% | |
| TCAAAACGTTCAACTTGGGT+AGG | + | chr4_3:52972159-52972178 | None:intergenic | 40.0% | |
| GATTTCATCCAACTCTTTGG+TGG | - | chr4_3:52972539-52972558 | Msa0646990:five_prime_UTR | 40.0% | |
| TCTTCTTCACACTGAGTCTG+AGG | - | chr4_3:52969944-52969963 | Msa0646990:three_prime_UTR | 45.0% | |
| TGAAACAGTCTCCTCAGTTC+AGG | + | chr4_3:52970356-52970375 | None:intergenic | 45.0% | |
| GAAGAAAGTCAAGACACAGC+AGG | + | chr4_3:52970838-52970857 | None:intergenic | 45.0% | |
| TTACGGGACAACTCAACTCT+TGG | + | chr4_3:52971396-52971415 | None:intergenic | 45.0% | |
| GAATGCCATCCCACAAATTG+AGG | - | chr4_3:52971515-52971534 | Msa0646990:CDS | 45.0% | |
| CGTCCATTGCTGCTAATACA+TGG | - | chr4_3:52971711-52971730 | Msa0646990:intron | 45.0% | |
| AGCTGAACAATTCCAGAAGC+AGG | - | chr4_3:52972227-52972246 | Msa0646990:intron | 45.0% | |
| CTGTCTCAAAAGTCTCTCCT+GGG | + | chr4_3:52972320-52972339 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTGTAATATTTTA+TGG | - | chr4_3:52970465-52970484 | Msa0646990:intron | 5.0% |
| TTCTGTTCGAACCGGAGGAA+AGG | - | chr4_3:52970988-52971007 | Msa0646990:CDS | 50.0% | |
| TCTGTTCGAACCGGAGGAAA+GGG | - | chr4_3:52970989-52971008 | Msa0646990:CDS | 50.0% | |
| ! | CAGAGCACCCTGAAGAGAAT+AGG | - | chr4_3:52971489-52971508 | Msa0646990:intron | 50.0% |
| TGCCATCCCACAAATTGAGG+AGG | - | chr4_3:52971518-52971537 | Msa0646990:CDS | 50.0% | |
| GACCTCCTCAATTTGTGGGA+TGG | + | chr4_3:52971523-52971542 | None:intergenic | 50.0% | |
| GCTGTCTCAAAAGTCTCTCC+TGG | + | chr4_3:52972321-52972340 | None:intergenic | 50.0% | |
| !!! | GACTTTTGAGACAGCTGCTG+AGG | - | chr4_3:52972326-52972345 | Msa0646990:intron | 50.0% |
| !!! | TTTTGAGACAGCTGCTGAGG+AGG | - | chr4_3:52972329-52972348 | Msa0646990:intron | 50.0% |
| !! | TCCAACTCTTTGGTGGTGTC+TGG | - | chr4_3:52972546-52972565 | Msa0646990:five_prime_UTR | 50.0% |
| ACCAGACACCACCAAAGAGT+TGG | + | chr4_3:52972550-52972569 | None:intergenic | 50.0% | |
| ! | ATGGCCGGTTCTGTTCGAAC+CGG | - | chr4_3:52970980-52970999 | Msa0646990:CDS | 55.0% |
| ! | TCCTCCGGTTCGAACAGAAC+CGG | + | chr4_3:52970987-52971006 | None:intergenic | 55.0% |
| TCTGACGGTACCCTTTCCTC+CGG | + | chr4_3:52971002-52971021 | None:intergenic | 55.0% | |
| !! | GAGGAAAGGGTACCGTCAGA+AGG | - | chr4_3:52971002-52971021 | Msa0646990:CDS | 55.0% |
| GGACGGCCTTCTTCTTTCTG+AGG | + | chr4_3:52971437-52971456 | None:intergenic | 55.0% | |
| GCAGCAATGGACGCTTGAAC+TGG | + | chr4_3:52971704-52971723 | None:intergenic | 55.0% | |
| TCTCTCCTGGGACAAGCTCT+GGG | + | chr4_3:52972308-52972327 | None:intergenic | 55.0% | |
| CTGCTTCAGGAGCCTGCTTC+TGG | + | chr4_3:52972242-52972261 | None:intergenic | 60.0% | |
| CAGAAGCAGGCTCCTGAAGC+AGG | - | chr4_3:52972240-52972259 | Msa0646990:intron | 60.0% | |
| GCTGAACCAGCACCTGCTTC+AGG | + | chr4_3:52972255-52972274 | None:intergenic | 60.0% | |
| GATGTCCCAGAGCTTGTCCC+AGG | - | chr4_3:52972300-52972319 | Msa0646990:intron | 60.0% | |
| GTCTCTCCTGGGACAAGCTC+TGG | + | chr4_3:52972309-52972328 | None:intergenic | 60.0% | |
| ! | GCCGGTTCTGTTCGAACCGG+AGG | - | chr4_3:52970983-52971002 | Msa0646990:CDS | 65.0% |
| CAGGCTCCTGAAGCAGGTGC+TGG | - | chr4_3:52972246-52972265 | Msa0646990:intron | 65.0% | |
| GACAGCTGCTGAGGAGGCCA+AGG | - | chr4_3:52972335-52972354 | Msa0646990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52969841 | 52972672 | 52969841 | ID=Msa0646990;Name=Msa0646990 |
| chr4_3 | mRNA | 52969841 | 52972672 | 52969841 | ID=Msa0646990-mRNA-1;Parent=Msa0646990;Name=Msa0646990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=181|1|1|1|0.8|0.83|6|307|160 |
| chr4_3 | exon | 52969841 | 52970317 | 52969841 | ID=Msa0646990-mRNA-1:exon:13101;Parent=Msa0646990-mRNA-1 |
| chr4_3 | exon | 52970404 | 52970442 | 52970404 | ID=Msa0646990-mRNA-1:exon:13100;Parent=Msa0646990-mRNA-1 |
| chr4_3 | exon | 52970752 | 52970808 | 52970752 | ID=Msa0646990-mRNA-1:exon:13099;Parent=Msa0646990-mRNA-1 |
| chr4_3 | exon | 52970925 | 52971073 | 52970925 | ID=Msa0646990-mRNA-1:exon:13098;Parent=Msa0646990-mRNA-1 |
| chr4_3 | exon | 52971490 | 52971557 | 52971490 | ID=Msa0646990-mRNA-1:exon:13097;Parent=Msa0646990-mRNA-1 |
| chr4_3 | exon | 52972492 | 52972672 | 52972492 | ID=Msa0646990-mRNA-1:exon:13096;Parent=Msa0646990-mRNA-1 |
| chr4_3 | five_prime_UTR | 52972492 | 52972672 | 52972492 | ID=Msa0646990-mRNA-1:five_prime_utr;Parent=Msa0646990-mRNA-1 |
| chr4_3 | CDS | 52971490 | 52971557 | 52971490 | ID=Msa0646990-mRNA-1:cds;Parent=Msa0646990-mRNA-1 |
| chr4_3 | CDS | 52970925 | 52971073 | 52970925 | ID=Msa0646990-mRNA-1:cds;Parent=Msa0646990-mRNA-1 |
| chr4_3 | CDS | 52970752 | 52970808 | 52970752 | ID=Msa0646990-mRNA-1:cds;Parent=Msa0646990-mRNA-1 |
| chr4_3 | CDS | 52970404 | 52970442 | 52970404 | ID=Msa0646990-mRNA-1:cds;Parent=Msa0646990-mRNA-1 |
| chr4_3 | CDS | 52970148 | 52970317 | 52970148 | ID=Msa0646990-mRNA-1:cds;Parent=Msa0646990-mRNA-1 |
| chr4_3 | three_prime_UTR | 52969841 | 52970147 | 52969841 | ID=Msa0646990-mRNA-1:three_prime_utr;Parent=Msa0646990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
