AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521510 MtrunA17_Chr3g0139411 95.372 713 14 4 1 695 1 712 0.0 1386
Msa0521510 MtrunA17_Chr2g0331821 52.389 565 225 6 167 695 204 760 0.0 550
Msa0521510 MtrunA17_Chr4g0004471 51.454 447 192 5 265 693 117 556 2.85e-145 435
Msa0521510 MtrunA17_Chr4g0004471 64.407 59 21 0 1 59 1 59 2.11e-13 73.6
Msa0521510 MtrunA17_Chr5g0405741 28.059 474 281 10 247 683 181 631 3.20e-48 180
Msa0521510 MtrunA17_Chr8g0335341 27.753 454 280 10 273 689 279 721 6.06e-48 180
Msa0521510 MtrunA17_Chr8g0335341 55.932 59 26 0 1 59 1 59 2.58e-14 76.6
Msa0521510 MtrunA17_Chr7g0250681 28.070 456 280 7 267 689 401 841 5.53e-47 178
Msa0521510 MtrunA17_Chr7g0250681 57.627 59 25 0 1 59 1 59 1.42e-14 77.8
Msa0521510 MtrunA17_Chr2g0303521 28.387 465 291 10 251 685 179 631 8.30e-42 161
Msa0521510 MtrunA17_Chr1g0211271 26.565 527 319 13 211 694 236 737 3.46e-41 160
Msa0521510 MtrunA17_Chr4g0072011 25.592 676 387 21 1 574 1 662 3.62e-40 157
Msa0521510 MtrunA17_Chr3g0118401 24.324 703 380 26 1 573 1 681 4.36e-35 142
Msa0521510 MtrunA17_Chr3g0124841 24.009 454 294 8 273 684 456 900 2.09e-29 125
Msa0521510 MtrunA17_Chr5g0448571 24.582 419 265 8 284 680 367 756 1.85e-26 115
Msa0521510 MtrunA17_Chr5g0440551 25.971 412 210 12 271 617 308 689 3.97e-25 111
Msa0521510 MtrunA17_Chr3g0143731 22.779 439 275 12 270 683 280 679 8.44e-22 100
Msa0521510 MtrunA17_Chr2g0298171 27.208 283 151 8 271 508 532 804 1.03e-20 97.4
Msa0521510 MtrunA17_Chr2g0298171 44.048 84 40 3 1 78 1 83 1.32e-12 71.2
Msa0521510 MtrunA17_Chr8g0382551 25.941 478 241 19 1 406 1 437 6.55e-20 93.2
Msa0521510 MtrunA17_Chr3g0130761 24.501 351 236 7 354 684 434 775 9.37e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521510 AT5G25590.1 55.426 774 262 17 1 694 1 771 0.0 692
Msa0521510 AT1G52320.3 59.729 442 161 4 258 683 10 450 0.0 530
Msa0521510 AT1G52320.4 59.729 442 161 4 258 683 10 450 0.0 530
Msa0521510 AT1G52320.1 59.637 441 163 2 258 683 313 753 8.22e-180 531
Msa0521510 AT1G52320.2 59.637 441 163 2 258 683 336 776 1.69e-179 531
Msa0521510 AT1G52320.5 59.637 441 163 2 258 683 336 776 1.69e-179 531
Msa0521510 AT1G02110.1 28.330 473 284 8 252 689 249 701 8.87e-52 191
Msa0521510 AT1G02110.1 52.542 59 28 0 1 59 1 59 5.24e-13 72.8
Msa0521510 AT3G51290.3 29.279 444 273 6 273 691 202 629 4.20e-51 188
Msa0521510 AT3G51290.2 29.279 444 273 6 273 691 202 629 4.41e-51 191
Msa0521510 AT3G51290.1 28.829 444 269 7 273 691 202 623 1.14e-46 176
Msa0521510 AT3G60320.1 28.211 436 276 10 267 673 351 778 2.77e-41 161
Msa0521510 AT3G60320.1 46.847 111 55 2 1 111 1 107 7.40e-16 82.0
Msa0521510 AT2G27090.2 24.499 698 394 21 1 588 1 675 1.64e-40 159
Msa0521510 AT2G27090.1 24.499 698 394 21 1 588 1 675 1.64e-40 159
Msa0521510 AT4G39790.1 25.990 631 354 21 1 561 9 596 1.93e-36 146
Msa0521510 AT4G30130.3 24.551 668 383 22 1 574 1 641 3.22e-29 124
Msa0521510 AT4G30130.1 24.551 668 383 22 1 574 1 641 3.22e-29 124
Msa0521510 AT1G21740.1 23.462 520 332 11 211 684 443 942 2.10e-28 122
Msa0521510 AT1G77500.1 25.000 448 284 9 273 690 451 876 3.83e-27 118
Msa0521510 AT4G35240.4 25.455 330 206 7 275 577 423 739 6.89e-23 104
Msa0521510 AT4G35240.3 25.455 330 206 7 275 577 423 739 6.89e-23 104
Msa0521510 AT4G35240.2 25.455 330 206 7 275 577 423 739 7.17e-23 104
Msa0521510 AT4G35240.1 25.455 330 206 7 275 577 423 739 7.17e-23 104
Msa0521510 AT1G20530.1 23.130 575 347 20 1 546 1 509 7.08e-22 100
Msa0521510 AT2G19090.1 25.714 350 204 7 271 574 385 724 7.28e-20 95.1
Msa0521510 AT2G17110.1 23.810 315 215 4 275 564 313 627 1.47e-18 90.9
Msa0521510 AT5G54480.1 23.601 411 254 14 293 683 345 715 3.25e-15 80.1
Msa0521510 AT2G34670.2 48.333 60 31 0 1 60 1 60 9.89e-11 65.5

Find 181 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATGGATATGGATAATA+TGG 0.114095 3_4:+74384052 Msa0521510:CDS
GGGCTTGGATTGGTGGATTT+TGG 0.116448 3_4:-74386136 None:intergenic
GGCTTGGGATTATTTCTTTA+TGG 0.126467 3_4:+74384037 Msa0521510:CDS
AAACTTGTTGCTCTTGTTAT+TGG 0.151747 3_4:+74385266 Msa0521510:CDS
GCGCCATCTTCTCCTTCTTC+TGG 0.159074 3_4:+74383969 Msa0521510:CDS
GGATTATTTCTTTATGGATA+TGG 0.176860 3_4:+74384043 Msa0521510:CDS
CAAATTGTGACTCCCATTCT+TGG 0.206075 3_4:-74385998 None:intergenic
GTTCTAACCATCCTTAATTA+TGG 0.212748 3_4:+74386794 Msa0521510:three_prime_UTR
GCCTTCGCCGCCGGTCATTC+AGG 0.243027 3_4:+74383618 Msa0521510:CDS
ATAACAAGAGCAACAAGTTT+TGG 0.264787 3_4:-74385263 None:intergenic
AAATGTGCTTTCCATAATTA+AGG 0.266395 3_4:-74386805 None:intergenic
AGAAACACATGCCACTGTTT+TGG 0.288622 3_4:+74384799 Msa0521510:CDS
GGTGAGAATGTTGATGTTAA+TGG 0.289655 3_4:+74384131 Msa0521510:CDS
CCCTTCGTTGTAAATGCTTC+TGG 0.304621 3_4:-74386346 None:intergenic
CTCAACTTTCTCCGGTGTCT+TGG 0.318035 3_4:-74384180 None:intergenic
TTCTAATTTCGCTGATGGTC+GGG 0.320744 3_4:+74384439 Msa0521510:CDS
ACAACTGAGAATCGCGAATA+TGG 0.320972 3_4:-74385238 None:intergenic
TCCAAAGGCGGTGGAGGTTT+AGG 0.322625 3_4:-74383747 None:intergenic
CGCCATCTTCTCCTTCTTCT+GGG 0.323153 3_4:+74383970 Msa0521510:CDS
AACTTGTTGCTCTTGTTATT+GGG 0.330220 3_4:+74385267 Msa0521510:CDS
GGAGGAAGAGATGAAGTTAA+AGG 0.341872 3_4:+74386262 Msa0521510:CDS
TGAGGTTGATGTGTATAATA+AGG 0.342260 3_4:+74384199 Msa0521510:CDS
TCCTAAACCTCCACCGCCTT+TGG 0.343046 3_4:+74383746 Msa0521510:CDS
ATAATCCCAAGCCATGTTCT+TGG 0.359746 3_4:-74384027 None:intergenic
TGAGTTTAGAAGAGCAATTA+AGG 0.371298 3_4:+74384298 Msa0521510:CDS
AGAGAAGCCGGTGAGAAATT+AGG 0.374879 3_4:-74383801 None:intergenic
TCAACTTTCTCCGGTGTCTT+GGG 0.378191 3_4:-74384179 None:intergenic
GGCGGAAGAGGCGGTGGAGG+AGG 0.380266 3_4:-74383780 None:intergenic
GAACATATTCTCCCACATAT+TGG 0.386881 3_4:-74385856 None:intergenic
GATGCCGCCACCGCCTTTGC+CGG 0.392756 3_4:+74384001 Msa0521510:CDS
GCAGATTTCGCTAGCTCGTC+AGG 0.404088 3_4:-74386194 None:intergenic
ACGACCGCACCGTGCAGCTT+TGG 0.406384 3_4:+74385967 Msa0521510:CDS
TGATATTTCTCAAGATCATA+AGG 0.409383 3_4:+74385926 Msa0521510:CDS
GAAGAGGCGGTGGAGGAGGG+AGG 0.409543 3_4:-74383776 None:intergenic
GCTCGTAATGCCTTCGCCGC+CGG 0.417087 3_4:+74383609 Msa0521510:CDS
GAGAAATATCAAGAGATTTG+AGG 0.419497 3_4:-74385914 None:intergenic
GAGAACTAAGAATCTGCATA+AGG 0.420407 3_4:-74384337 None:intergenic
TGAGCTCTTCCGCGCGCTAT+CGG 0.425047 3_4:+74386538 Msa0521510:CDS
CTAAGATGCTTGAAGCTACT+AGG 0.436626 3_4:+74384405 Msa0521510:CDS
ATCATCTCTTTCTAGATCAT+CGG 0.445892 3_4:-74386372 None:intergenic
CAAGCCATGTTCTTGGAATC+CGG 0.447999 3_4:-74384020 None:intergenic
GGTACCATTCTTCAAAAGCT+TGG 0.451334 3_4:-74386325 None:intergenic
TTGTTGAAGAGGTGGAAGAA+GGG 0.456126 3_4:+74383907 Msa0521510:CDS
ATTCTAATTTCGCTGATGGT+CGG 0.456595 3_4:+74384438 Msa0521510:CDS
CTTTCAGGATGGCCAATATG+TGG 0.463738 3_4:+74385844 Msa0521510:intron
GTGAGGATGCAGCTTAACTT+AGG 0.464738 3_4:-74386692 None:intergenic
GATAGCGCGCGGAAGAGCTC+AGG 0.466453 3_4:-74386536 None:intergenic
ACAAACTGCTTCTCCGAGAT+CGG 0.469741 3_4:-74386410 None:intergenic
AAGATCGGCGGTGGAATTAG+TGG 0.472783 3_4:+74383873 Msa0521510:CDS
TCATCTCTTTCTAGATCATC+GGG 0.475608 3_4:-74386371 None:intergenic
CGGATTCCAAGAACATGGCT+TGG 0.478452 3_4:+74384021 Msa0521510:CDS
TATCATTCTAATTTCGCTGA+TGG 0.478716 3_4:+74384434 Msa0521510:CDS
CCCTACACAACACTATCTTA+AGG 0.478827 3_4:-74386849 None:intergenic
CATTCAAGGGTGTATCCAAT+GGG 0.479178 3_4:+74384741 Msa0521510:CDS
ACATCCAAGCTCTTTATAGC+TGG 0.481961 3_4:+74386048 Msa0521510:CDS
TTGGAATCCGGCAAAGGCGG+TGG 0.482836 3_4:-74384008 None:intergenic
TAAAGAAGGGCTTGGATTGG+TGG 0.484719 3_4:-74386143 None:intergenic
GGATTCCAAGAACATGGCTT+GGG 0.486447 3_4:+74384022 Msa0521510:CDS
GAAATGTGAGGAAACTAGAA+AGG 0.486729 3_4:+74386286 Msa0521510:CDS
AAAACAAAATAATCTGTGTT+GGG 0.487035 3_4:+74383350 None:intergenic
CAAAACAAAATAATCTGTGT+TGG 0.487391 3_4:+74383349 None:intergenic
ATTGTTGAAGAGGTGGAAGA+AGG 0.490175 3_4:+74383906 Msa0521510:CDS
GATGAGATTGAGAATGAAGA+AGG 0.491897 3_4:+74384098 Msa0521510:CDS
ATTGCCCACGCTCAAGGTGG+TGG 0.492952 3_4:+74386605 Msa0521510:CDS
TTTGGAATGTAATCCAAGAA+TGG 0.494175 3_4:+74385985 Msa0521510:CDS
TTAGGCGGAAGAGGCGGTGG+AGG 0.494227 3_4:-74383783 None:intergenic
GAATCCGGCAAAGGCGGTGG+CGG 0.494775 3_4:-74384005 None:intergenic
ATTGCTCTTCTAAACTCAGC+AGG 0.495940 3_4:-74384293 None:intergenic
GGCGCCAGTGTTGAATCATT+AGG 0.496446 3_4:+74385131 Msa0521510:CDS
GAGAATGAGAAGAAAAGAGA+AGG 0.496594 3_4:-74383465 None:intergenic
TTGGAATGTAATCCAAGAAT+GGG 0.497192 3_4:+74385986 Msa0521510:CDS
CAGTTACAGCACCGCAAGAT+CGG 0.497409 3_4:+74383858 Msa0521510:CDS
GGGAAGAGGTTCTTTGAATG+AGG 0.498151 3_4:+74384073 Msa0521510:CDS
TCTAATTTCGCTGATGGTCG+GGG 0.499933 3_4:+74384440 Msa0521510:CDS
AGAACTAAGAATCTGCATAA+GGG 0.500689 3_4:-74384336 None:intergenic
ACCTGAATGACCGGCGGCGA+AGG 0.502395 3_4:-74383619 None:intergenic
AAATTAGGCGGAAGAGGCGG+TGG 0.507309 3_4:-74383786 None:intergenic
AGAATGAGAAGAAAAGAGAA+GGG 0.507845 3_4:-74383464 None:intergenic
GATTCTTCCAAAGGCGGTGG+AGG 0.508145 3_4:-74383753 None:intergenic
TGCAAGTGATAACATGGAAT+CGG 0.508476 3_4:+74384717 Msa0521510:CDS
GCGGAAGAGGCGGTGGAGGA+GGG 0.508892 3_4:-74383779 None:intergenic
TTTATGGATATGGATAATAT+GGG 0.509779 3_4:+74384053 Msa0521510:CDS
AATCATGCCATGCATAAAGA+AGG 0.514400 3_4:-74386157 None:intergenic
AAAGACGATCATACTTCAGC+AGG 0.518195 3_4:+74386241 Msa0521510:CDS
CAGCACCGCAAGATCGGCGG+TGG 0.518911 3_4:+74383864 Msa0521510:CDS
CGGTCATTCAGGTTATGCTA+TGG 0.522813 3_4:+74383629 Msa0521510:CDS
GGTGAGAAATTAGGCGGAAG+AGG 0.523496 3_4:-74383792 None:intergenic
TGAGCCAGCTATAAAGAGCT+TGG 0.525015 3_4:-74386052 None:intergenic
AGGCACATAATTGAACACTT+AGG 0.530110 3_4:-74386829 None:intergenic
GAAGGAGAAGATGGCGCGTG+AGG 0.530503 3_4:-74383963 None:intergenic
ACATCAACCTCAACTTTCTC+CGG 0.530753 3_4:-74384188 None:intergenic
GTGCTTTCCATAATTAAGGA+TGG 0.531625 3_4:-74386801 None:intergenic
TCATTCAAGGGTGTATCCAA+TGG 0.533090 3_4:+74384740 Msa0521510:CDS
TCCAAGCCCTTCTTTATGCA+TGG 0.533581 3_4:+74386150 Msa0521510:CDS
CTCCCAGAAGAAGGAGAAGA+TGG 0.534623 3_4:-74383972 None:intergenic
AAGTCGATTGCCCACGCTCA+AGG 0.535916 3_4:+74386599 Msa0521510:CDS
AACATGGAATCGGTCATTCA+AGG 0.539680 3_4:+74384727 Msa0521510:CDS
GGTGTATCCAATGGGGAGGG+TGG 0.541152 3_4:+74384749 Msa0521510:CDS
GCCATGCATAAAGAAGGGCT+TGG 0.543280 3_4:-74386151 None:intergenic
CTTTATCACTGCAGAAAATG+AGG 0.543457 3_4:-74386222 None:intergenic
ATCACTTTACTCCCAGAAGA+AGG 0.544452 3_4:-74383981 None:intergenic
GATATGGATAATATGGGAAG+AGG 0.547615 3_4:+74384059 Msa0521510:CDS
GGCGGTGGAATTAGTGGTGG+AGG 0.549912 3_4:+74383879 Msa0521510:CDS
GAGAGGACAGAAGAGAGAGA+AGG 0.550486 3_4:-74383396 None:intergenic
CCAGAAGCATTTACAACGAA+GGG 0.551600 3_4:+74386346 Msa0521510:CDS
ACAGAGCGTTTGAGAGAAGC+CGG 0.551771 3_4:-74383813 None:intergenic
GGATCAGAATGAAGAGGCGG+TGG 0.555414 3_4:-74383726 None:intergenic
TTTGGACAAGTTGTTAGCAT+GGG 0.555933 3_4:+74384817 Msa0521510:CDS
GCATAAAGAAGGGCTTGGAT+TGG 0.556125 3_4:-74386146 None:intergenic
AAGAGGCGGTGGAGGAGGGA+GGG 0.557539 3_4:-74383775 None:intergenic
TAATTCCACCGCCGATCTTG+CGG 0.558644 3_4:-74383869 None:intergenic
CATAGCATAACCTGAATGAC+CGG 0.563400 3_4:-74383628 None:intergenic
TGCTGTAACTGCAACGACAC+AGG 0.563887 3_4:-74383846 None:intergenic
AAATACAAACAATCCGATCT+CGG 0.564703 3_4:+74386397 Msa0521510:CDS
ACATGGAATCGGTCATTCAA+GGG 0.566506 3_4:+74384728 Msa0521510:CDS
TTCTTGGAATCCGGCAAAGG+CGG 0.566851 3_4:-74384011 None:intergenic
AGGGATTCTTCCAAAGGCGG+TGG 0.573076 3_4:-74383756 None:intergenic
AGTTTCGCCGTGAGCGTAGT+CGG 0.573795 3_4:-74383679 None:intergenic
TTTCAGGATGGCCAATATGT+GGG 0.579247 3_4:+74385845 Msa0521510:intron
AATGAAGAAGGTGAAATTGA+AGG 0.580423 3_4:+74384110 Msa0521510:CDS
ATTTGAGTGAAGAATGAGAA+TGG 0.580527 3_4:-74383434 None:intergenic
GAAGAGGTGGAAGAAGGGAA+AGG 0.581945 3_4:+74383912 Msa0521510:CDS
GTATGCTGCTTTCTTGTGTG+AGG 0.582315 3_4:-74386709 None:intergenic
GGGAAAGGCGGTGATGCTGA+TGG 0.584993 3_4:+74383927 Msa0521510:CDS
TGGAGGTGACATTGTTGAAG+AGG 0.585814 3_4:+74383896 Msa0521510:CDS
GAAACTCTATGAAGAAGTCA+AGG 0.586792 3_4:+74384844 Msa0521510:CDS
CGCACCACCACCTTGAGCGT+GGG 0.587071 3_4:-74386609 None:intergenic
GAGGTGGAAGAAGGGAAAGG+CGG 0.588013 3_4:+74383915 Msa0521510:CDS
CCGCACCACCACCTTGAGCG+TGG 0.589202 3_4:-74386610 None:intergenic
GTAGTCGGAGAGAGCGGCGC+CGG 0.592343 3_4:-74383664 None:intergenic
GCCTTAAGATAGTGTTGTGT+AGG 0.592871 3_4:+74386848 Msa0521510:three_prime_UTR
GAGTCATGCAAGTGATAACA+TGG 0.593246 3_4:+74384711 Msa0521510:CDS
CAGAAGCATTTACAACGAAG+GGG 0.593582 3_4:+74386347 Msa0521510:CDS
AGGTGACATTGTTGAAGAGG+TGG 0.593877 3_4:+74383899 Msa0521510:CDS
GGTGCGGTCGTAATGATGCT+TGG 0.594455 3_4:-74385955 None:intergenic
GGACTCAACAGTTTCTGAAG+TGG 0.596338 3_4:+74385214 Msa0521510:CDS
GGTTAGAACCTACAAAGCTA+TGG 0.600579 3_4:-74386780 None:intergenic
CCACGCTCAAGGTGGTGGTG+CGG 0.602808 3_4:+74386610 Msa0521510:CDS
ATGTTCTTGGAATCCGGCAA+AGG 0.605757 3_4:-74384014 None:intergenic
GAGTGAAGAATGAGAATGGT+TGG 0.606760 3_4:-74383430 None:intergenic
TCTTCCGCCTAATTTCTCAC+CGG 0.608905 3_4:+74383794 Msa0521510:CDS
ATCATGCCATGCATAAAGAA+GGG 0.611365 3_4:-74386156 None:intergenic
GAAGTTAAAGGAGAAATGTG+AGG 0.611782 3_4:+74386274 Msa0521510:CDS
AAACTAGAAAGGAATTCTTG+AGG 0.618185 3_4:+74386297 Msa0521510:CDS
GGAGGGAGGGATTCTTCCAA+AGG 0.620699 3_4:-74383762 None:intergenic
CAAGGGTGTATCCAATGGGG+AGG 0.622313 3_4:+74384745 Msa0521510:CDS
GCTCTCTCCGACTACGCTCA+CGG 0.622545 3_4:+74383672 Msa0521510:CDS
ATCTGCATAAGGGTAACAGA+AGG 0.622988 3_4:-74384326 None:intergenic
ACCAGAAGCATTTACAACGA+AGG 0.625698 3_4:+74386345 Msa0521510:CDS
CTGAACAAGCAGAAGAAGCG+TGG 0.626103 3_4:+74385110 Msa0521510:CDS
TTTGCCGGATTCCAAGAACA+TGG 0.627689 3_4:+74384016 Msa0521510:CDS
CCTTAAGATAGTGTTGTGTA+GGG 0.628462 3_4:+74386849 Msa0521510:three_prime_UTR
GACGATCATACTTCAGCAGG+AGG 0.629306 3_4:+74386244 Msa0521510:CDS
GGTTGGTGACAAAGAGAGAG+AGG 0.629558 3_4:-74383413 None:intergenic
ATCGGCGGTGGAATTAGTGG+TGG 0.630858 3_4:+74383876 Msa0521510:CDS
TGAGATTGAACCCAAGACAC+CGG 0.633573 3_4:+74384169 Msa0521510:CDS
GGAGCATGAACATGTACATG+AGG 0.635866 3_4:+74384220 Msa0521510:CDS
GATTACATTCCAAAGCTGCA+CGG 0.636378 3_4:-74385976 None:intergenic
CAAGACACCGGAGAAAGTTG+AGG 0.641109 3_4:+74384181 Msa0521510:CDS
TGAGGATGATGTGATAAGAG+AGG 0.648109 3_4:+74384238 Msa0521510:CDS
GGCGGCGAAGGCATTACGAG+CGG 0.649430 3_4:-74383607 None:intergenic
GTGAGCGTAGTCGGAGAGAG+CGG 0.649810 3_4:-74383670 None:intergenic
GAGAAATTAGGCGGAAGAGG+CGG 0.650849 3_4:-74383789 None:intergenic
GGTTTAGGATCAGAATGAAG+AGG 0.652248 3_4:-74383732 None:intergenic
TTACAGCACCGCAAGATCGG+CGG 0.652795 3_4:+74383861 Msa0521510:CDS
GAGAATGTTGATGTTAATGG+AGG 0.660500 3_4:+74384134 Msa0521510:CDS
TGATGTTAATGGAGGACATG+TGG 0.660982 3_4:+74384142 Msa0521510:CDS
AAGGGTGTATCCAATGGGGA+GGG 0.663838 3_4:+74384746 Msa0521510:CDS
TGTTAATGGAGGACATGTGG+AGG 0.675457 3_4:+74384145 Msa0521510:CDS
CATTCCAAAGCTGCACGGTG+CGG 0.678361 3_4:-74385971 None:intergenic
GAAGCCGGTGAGAAATTAGG+CGG 0.684519 3_4:-74383798 None:intergenic
GGGAGGGATTCTTCCAAAGG+CGG 0.689716 3_4:-74383759 None:intergenic
GTTTAGAAGAGCAATTAAGG+TGG 0.690000 3_4:+74384301 Msa0521510:CDS
GAGTATAATCCGATAGCGCG+CGG 0.690717 3_4:-74386547 None:intergenic
TGTAACTGCAACGACACAGG+CGG 0.699824 3_4:-74383843 None:intergenic
AGAAGCATTTACAACGAAGG+GGG 0.702303 3_4:+74386348 Msa0521510:CDS
TTAGGATCAGAATGAAGAGG+CGG 0.705551 3_4:-74383729 None:intergenic
AGCATAACCTGAATGACCGG+CGG 0.709251 3_4:-74383625 None:intergenic
TCGATTGCCCACGCTCAAGG+TGG 0.713047 3_4:+74386602 Msa0521510:CDS
TAACAACTTGTCCAAAACAG+TGG 0.715371 3_4:-74384810 None:intergenic
ATTCAAGGGTGTATCCAATG+GGG 0.730624 3_4:+74384742 Msa0521510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAAGTGAAATTTTAAAA+AGG - chr3_4:74385038-74385057 None:intergenic 15.0%
!! ATATTCTATAAAATTGTAAG+TGG + chr3_4:74385531-74385550 Msa0521510:intron 15.0%
!! TACAACATTAAAATAAACTT+CGG - chr3_4:74385644-74385663 None:intergenic 15.0%
!! TTTATGGATATGGATAATAT+GGG + chr3_4:74384053-74384072 Msa0521510:CDS 20.0%
!! ACTGAAGTTGAATAAAATAA+AGG - chr3_4:74384492-74384511 None:intergenic 20.0%
!!! CAACTAGAGTTTTAAAAAAA+AGG - chr3_4:74384597-74384616 None:intergenic 20.0%
!!! GAAAGTATAAATGTCAAAAA+TGG - chr3_4:74384883-74384902 None:intergenic 20.0%
!!! TAGAATATATTTTGCAACAT+CGG - chr3_4:74385519-74385538 None:intergenic 20.0%
!!! TAATAAAATGCTTTTCGATT+GGG - chr3_4:74385562-74385581 None:intergenic 20.0%
!!! ATAATAAAATGCTTTTCGAT+TGG - chr3_4:74385563-74385582 None:intergenic 20.0%
!! TTCCATTTTCTAACTCAAAA+TGG + chr3_4:74383503-74383522 Msa0521510:exon 25.0%
!! TCCATTTTCTAACTCAAAAT+GGG + chr3_4:74383504-74383523 Msa0521510:exon 25.0%
!! GGATTATTTCTTTATGGATA+TGG + chr3_4:74384043-74384062 Msa0521510:CDS 25.0%
! CTTTATGGATATGGATAATA+TGG + chr3_4:74384052-74384071 Msa0521510:CDS 25.0%
!!! GAGTTTTAAAAAAAAGGTCT+AGG - chr3_4:74384591-74384610 None:intergenic 25.0%
! ATCATTAGGAAAAACTAAAG+CGG + chr3_4:74385145-74385164 Msa0521510:CDS 25.0%
! CAAATATAGATTGAGAATCT+AGG - chr3_4:74385597-74385616 None:intergenic 25.0%
! TAAAATAAACTTCGGTATCT+AGG - chr3_4:74385636-74385655 None:intergenic 25.0%
!!! TTTTCAATTTGTTCTGGTAT+TGG + chr3_4:74385710-74385729 Msa0521510:intron 25.0%
! TGATGCAAAAAATAGAAACT+TGG - chr3_4:74385778-74385797 None:intergenic 25.0%
!!! TCTATTTTTTGCATCACAAA+TGG + chr3_4:74385782-74385801 Msa0521510:intron 25.0%
! TGATATTTCTCAAGATCATA+AGG + chr3_4:74385926-74385945 Msa0521510:CDS 25.0%
! AAATGTGCTTTCCATAATTA+AGG - chr3_4:74386808-74386827 None:intergenic 25.0%
ATTTGAGTGAAGAATGAGAA+TGG - chr3_4:74383437-74383456 None:intergenic 30.0%
AGAATGAGAAGAAAAGAGAA+GGG - chr3_4:74383467-74383486 None:intergenic 30.0%
!!! ACCCATTTTGAGTTAGAAAA+TGG - chr3_4:74383508-74383527 None:intergenic 30.0%
AATGAAGAAGGTGAAATTGA+AGG + chr3_4:74384110-74384129 Msa0521510:CDS 30.0%
!! TGAGGTTGATGTGTATAATA+AGG + chr3_4:74384199-74384218 Msa0521510:CDS 30.0%
TGAGTTTAGAAGAGCAATTA+AGG + chr3_4:74384298-74384317 Msa0521510:CDS 30.0%
AGAACTAAGAATCTGCATAA+GGG - chr3_4:74384339-74384358 None:intergenic 30.0%
TATCATTCTAATTTCGCTGA+TGG + chr3_4:74384434-74384453 Msa0521510:CDS 30.0%
CAATTTGGATAATGACATCA+AGG - chr3_4:74384564-74384583 None:intergenic 30.0%
TGATGTCATTATCCAAATTG+CGG + chr3_4:74384564-74384583 Msa0521510:intron 30.0%
!!! GTTTAAGGTTTTTAGTTAGC+TGG + chr3_4:74384623-74384642 Msa0521510:intron 30.0%
AAAGCTAACTAACAAGATGA+AGG - chr3_4:74384905-74384924 None:intergenic 30.0%
!! TAACTTGTTGCTCTTAATGA+GGG + chr3_4:74385008-74385027 Msa0521510:intron 30.0%
! TTTTCCTAATGATTCAACAC+TGG - chr3_4:74385138-74385157 None:intergenic 30.0%
TCTTGTGTGTAAATGACTTA+CGG - chr3_4:74385171-74385190 None:intergenic 30.0%
! ATAACAAGAGCAACAAGTTT+TGG - chr3_4:74385266-74385285 None:intergenic 30.0%
!! AAACTTGTTGCTCTTGTTAT+TGG + chr3_4:74385266-74385285 Msa0521510:CDS 30.0%
!! AACTTGTTGCTCTTGTTATT+GGG + chr3_4:74385267-74385286 Msa0521510:CDS 30.0%
CTAAGATATCAAATAAGCAC+AGG - chr3_4:74385335-74385354 None:intergenic 30.0%
GTGCTTATTTGATATCTTAG+TGG + chr3_4:74385335-74385354 Msa0521510:intron 30.0%
! TTGGTTAAAGGAAGTTTTCA+AGG - chr3_4:74385420-74385439 None:intergenic 30.0%
CTAACATTCAAGACTAATTC+AGG - chr3_4:74385473-74385492 None:intergenic 30.0%
TGTAAAGTGACACGATTATT+AGG - chr3_4:74385675-74385694 None:intergenic 30.0%
!! TCCTAGTTTTCAATTTGTTC+TGG + chr3_4:74385704-74385723 Msa0521510:intron 30.0%
ACCAGAACAAATTGAAAACT+AGG - chr3_4:74385708-74385727 None:intergenic 30.0%
! TTGGTGTGTTAGCAAAATTT+TGG - chr3_4:74385748-74385767 None:intergenic 30.0%
ATAGAAACTTGGTACTTGAT+TGG - chr3_4:74385767-74385786 None:intergenic 30.0%
TCAAGTAGATTCATGAATCA+TGG - chr3_4:74385821-74385840 None:intergenic 30.0%
GAATCTACTTGATTTCTTTC+AGG + chr3_4:74385829-74385848 Msa0521510:intron 30.0%
GAGAAATATCAAGAGATTTG+AGG - chr3_4:74385917-74385936 None:intergenic 30.0%
! TTTGGAATGTAATCCAAGAA+TGG + chr3_4:74385985-74386004 Msa0521510:CDS 30.0%
TTGGAATGTAATCCAAGAAT+GGG + chr3_4:74385986-74386005 Msa0521510:CDS 30.0%
!!! GAGACGAGATTTTTTCTTTT+AGG - chr3_4:74386106-74386125 None:intergenic 30.0%
AAACTAGAAAGGAATTCTTG+AGG + chr3_4:74386297-74386316 Msa0521510:CDS 30.0%
!! AAAACCAAGCTTTTGAAGAA+TGG + chr3_4:74386321-74386340 Msa0521510:CDS 30.0%
ATCATCTCTTTCTAGATCAT+CGG - chr3_4:74386375-74386394 None:intergenic 30.0%
AAATACAAACAATCCGATCT+CGG + chr3_4:74386397-74386416 Msa0521510:CDS 30.0%
!!! AAATTTTGCCATAGCTTTGT+AGG + chr3_4:74386772-74386791 Msa0521510:three_prime_UTR 30.0%
GTTCTAACCATCCTTAATTA+TGG + chr3_4:74386794-74386813 Msa0521510:three_prime_UTR 30.0%
GAGAATGAGAAGAAAAGAGA+AGG - chr3_4:74383468-74383487 None:intergenic 35.0%
! CTTCACGCATTAAGTTTTTG+CGG - chr3_4:74383581-74383600 None:intergenic 35.0%
! GGCTTGGGATTATTTCTTTA+TGG + chr3_4:74384037-74384056 Msa0521510:CDS 35.0%
GATATGGATAATATGGGAAG+AGG + chr3_4:74384059-74384078 Msa0521510:CDS 35.0%
GATGAGATTGAGAATGAAGA+AGG + chr3_4:74384098-74384117 Msa0521510:CDS 35.0%
GGTGAGAATGTTGATGTTAA+TGG + chr3_4:74384131-74384150 Msa0521510:CDS 35.0%
GAGAATGTTGATGTTAATGG+AGG + chr3_4:74384134-74384153 Msa0521510:CDS 35.0%
GTTTAGAAGAGCAATTAAGG+TGG + chr3_4:74384301-74384320 Msa0521510:CDS 35.0%
GAGAACTAAGAATCTGCATA+AGG - chr3_4:74384340-74384359 None:intergenic 35.0%
ATTCTAATTTCGCTGATGGT+CGG + chr3_4:74384438-74384457 Msa0521510:CDS 35.0%
!!! GTGACCAAAGTTTTAAATCG+CGG + chr3_4:74384526-74384545 Msa0521510:intron 35.0%
!!! TGACCAAAGTTTTAAATCGC+GGG + chr3_4:74384527-74384546 Msa0521510:intron 35.0%
CTCTAGTTGTGTGAAGTTTA+AGG + chr3_4:74384608-74384627 Msa0521510:intron 35.0%
! TGATTTGCAATGACATTAGC+AGG + chr3_4:74384668-74384687 Msa0521510:intron 35.0%
TGCAAGTGATAACATGGAAT+CGG + chr3_4:74384717-74384736 Msa0521510:CDS 35.0%
TAACAACTTGTCCAAAACAG+TGG - chr3_4:74384813-74384832 None:intergenic 35.0%
! TTTTGGACAAGTTGTTAGCA+TGG + chr3_4:74384816-74384835 Msa0521510:CDS 35.0%
TTTGGACAAGTTGTTAGCAT+GGG + chr3_4:74384817-74384836 Msa0521510:CDS 35.0%
GAAACTCTATGAAGAAGTCA+AGG + chr3_4:74384844-74384863 Msa0521510:CDS 35.0%
!! GTAACTTGTTGCTCTTAATG+AGG + chr3_4:74385007-74385026 Msa0521510:intron 35.0%
TATTGTTGATATGCAGTCGA+TGG + chr3_4:74385193-74385212 Msa0521510:intron 35.0%
! TATTGGGTAAGTATTGCCAA+TGG + chr3_4:74385283-74385302 Msa0521510:intron 35.0%
! ATTGGGTAAGTATTGCCAAT+GGG + chr3_4:74385284-74385303 Msa0521510:intron 35.0%
! ATATCTCTTTGACTTCCCAT+TGG - chr3_4:74385302-74385321 None:intergenic 35.0%
!! GTTTTCAAGGAAGTTCACAA+CGG - chr3_4:74385407-74385426 None:intergenic 35.0%
! GAAATTTAGGACGTTGTCAT+TGG - chr3_4:74385439-74385458 None:intergenic 35.0%
GTCCTAAATTTCATGCTTGT+TGG + chr3_4:74385447-74385466 Msa0521510:intron 35.0%
CTACTTGATTTCTTTCAGGA+TGG + chr3_4:74385833-74385852 Msa0521510:intron 35.0%
GAACATATTCTCCCACATAT+TGG - chr3_4:74385859-74385878 None:intergenic 35.0%
!!! TCTTTTAGGTTGCTTTCGAT+GGG - chr3_4:74386092-74386111 None:intergenic 35.0%
!!! TTCTTTTAGGTTGCTTTCGA+TGG - chr3_4:74386093-74386112 None:intergenic 35.0%
ATCATGCCATGCATAAAGAA+GGG - chr3_4:74386159-74386178 None:intergenic 35.0%
AATCATGCCATGCATAAAGA+AGG - chr3_4:74386160-74386179 None:intergenic 35.0%
CTTTATCACTGCAGAAAATG+AGG - chr3_4:74386225-74386244 None:intergenic 35.0%
GAAGTTAAAGGAGAAATGTG+AGG + chr3_4:74386274-74386293 Msa0521510:CDS 35.0%
GAAATGTGAGGAAACTAGAA+AGG + chr3_4:74386286-74386305 Msa0521510:CDS 35.0%
TCATCTCTTTCTAGATCATC+GGG - chr3_4:74386374-74386393 None:intergenic 35.0%
GTGCTTTCCATAATTAAGGA+TGG - chr3_4:74386804-74386823 None:intergenic 35.0%
AGGCACATAATTGAACACTT+AGG - chr3_4:74386832-74386851 None:intergenic 35.0%
CCTTAAGATAGTGTTGTGTA+GGG + chr3_4:74386849-74386868 Msa0521510:three_prime_UTR 35.0%
GAGTGAAGAATGAGAATGGT+TGG - chr3_4:74383433-74383452 None:intergenic 40.0%
CATAGCATAACCTGAATGAC+CGG - chr3_4:74383631-74383650 None:intergenic 40.0%
TTAGGATCAGAATGAAGAGG+CGG - chr3_4:74383732-74383751 None:intergenic 40.0%
! GGTTTAGGATCAGAATGAAG+AGG - chr3_4:74383735-74383754 None:intergenic 40.0%
ATTGTTGAAGAGGTGGAAGA+AGG + chr3_4:74383906-74383925 Msa0521510:CDS 40.0%
TTGTTGAAGAGGTGGAAGAA+GGG + chr3_4:74383907-74383926 Msa0521510:CDS 40.0%
ATCACTTTACTCCCAGAAGA+AGG - chr3_4:74383984-74384003 None:intergenic 40.0%
ATAATCCCAAGCCATGTTCT+TGG - chr3_4:74384030-74384049 None:intergenic 40.0%
TGATGTTAATGGAGGACATG+TGG + chr3_4:74384142-74384161 Msa0521510:CDS 40.0%
ACATCAACCTCAACTTTCTC+CGG - chr3_4:74384191-74384210 None:intergenic 40.0%
TGAGGATGATGTGATAAGAG+AGG + chr3_4:74384238-74384257 Msa0521510:CDS 40.0%
ATTGCTCTTCTAAACTCAGC+AGG - chr3_4:74384296-74384315 None:intergenic 40.0%
ATCTGCATAAGGGTAACAGA+AGG - chr3_4:74384329-74384348 None:intergenic 40.0%
CTAAGATGCTTGAAGCTACT+AGG + chr3_4:74384405-74384424 Msa0521510:CDS 40.0%
TTCTAATTTCGCTGATGGTC+GGG + chr3_4:74384439-74384458 Msa0521510:CDS 40.0%
TTAGCTGGAATTGACATGCA+AGG + chr3_4:74384638-74384657 Msa0521510:intron 40.0%
GAGTCATGCAAGTGATAACA+TGG + chr3_4:74384711-74384730 Msa0521510:CDS 40.0%
AACATGGAATCGGTCATTCA+AGG + chr3_4:74384727-74384746 Msa0521510:CDS 40.0%
ACATGGAATCGGTCATTCAA+GGG + chr3_4:74384728-74384747 Msa0521510:CDS 40.0%
! TCATTCAAGGGTGTATCCAA+TGG + chr3_4:74384740-74384759 Msa0521510:CDS 40.0%
! CATTCAAGGGTGTATCCAAT+GGG + chr3_4:74384741-74384760 Msa0521510:CDS 40.0%
! ATTCAAGGGTGTATCCAATG+GGG + chr3_4:74384742-74384761 Msa0521510:CDS 40.0%
! AGAAACACATGCCACTGTTT+TGG + chr3_4:74384799-74384818 Msa0521510:CDS 40.0%
TAGAAAACACGACAGTACAG+TGG - chr3_4:74384955-74384974 None:intergenic 40.0%
TTCACTTATTGTCGACAGCA+AGG + chr3_4:74385047-74385066 Msa0521510:intron 40.0%
ACAACTGAGAATCGCGAATA+TGG - chr3_4:74385241-74385260 None:intergenic 40.0%
! AGGACGTTGTCATTGGTTAA+AGG - chr3_4:74385432-74385451 None:intergenic 40.0%
GGCCAACAAGCATGAAATTT+AGG - chr3_4:74385452-74385471 None:intergenic 40.0%
! TTGCAACATCGGTTACTACT+AGG - chr3_4:74385508-74385527 None:intergenic 40.0%
TTTCAGGATGGCCAATATGT+GGG + chr3_4:74385845-74385864 Msa0521510:intron 40.0%
! GGTCTGTAACTATTTTCAGC+TGG - chr3_4:74385896-74385915 None:intergenic 40.0%
GATTACATTCCAAAGCTGCA+CGG - chr3_4:74385979-74385998 None:intergenic 40.0%
CAAATTGTGACTCCCATTCT+TGG - chr3_4:74386001-74386020 None:intergenic 40.0%
ACATCCAAGCTCTTTATAGC+TGG + chr3_4:74386048-74386067 Msa0521510:CDS 40.0%
AAAGACGATCATACTTCAGC+AGG + chr3_4:74386241-74386260 Msa0521510:CDS 40.0%
GGAGGAAGAGATGAAGTTAA+AGG + chr3_4:74386262-74386281 Msa0521510:CDS 40.0%
GGTACCATTCTTCAAAAGCT+TGG - chr3_4:74386328-74386347 None:intergenic 40.0%
!! ACCAGAAGCATTTACAACGA+AGG + chr3_4:74386345-74386364 Msa0521510:CDS 40.0%
!! CCAGAAGCATTTACAACGAA+GGG + chr3_4:74386346-74386365 Msa0521510:CDS 40.0%
!! CAGAAGCATTTACAACGAAG+GGG + chr3_4:74386347-74386366 Msa0521510:CDS 40.0%
!! AGAAGCATTTACAACGAAGG+GGG + chr3_4:74386348-74386367 Msa0521510:CDS 40.0%
GGTTAGAACCTACAAAGCTA+TGG - chr3_4:74386783-74386802 None:intergenic 40.0%
GCCTTAAGATAGTGTTGTGT+AGG + chr3_4:74386848-74386867 Msa0521510:three_prime_UTR 40.0%
CCCTACACAACACTATCTTA+AGG - chr3_4:74386852-74386871 None:intergenic 40.0%
! CGGTCATTCAGGTTATGCTA+TGG + chr3_4:74383629-74383648 Msa0521510:CDS 45.0%
GCTATGGCTCTCAAAAACAC+CGG + chr3_4:74383645-74383664 Msa0521510:CDS 45.0%
TCTTCCGCCTAATTTCTCAC+CGG + chr3_4:74383794-74383813 Msa0521510:CDS 45.0%
AGAGAAGCCGGTGAGAAATT+AGG - chr3_4:74383804-74383823 None:intergenic 45.0%
TGGAGGTGACATTGTTGAAG+AGG + chr3_4:74383896-74383915 Msa0521510:CDS 45.0%
AGGTGACATTGTTGAAGAGG+TGG + chr3_4:74383899-74383918 Msa0521510:CDS 45.0%
ATGTTCTTGGAATCCGGCAA+AGG - chr3_4:74384017-74384036 None:intergenic 45.0%
TTTGCCGGATTCCAAGAACA+TGG + chr3_4:74384016-74384035 Msa0521510:CDS 45.0%
CAAGCCATGTTCTTGGAATC+CGG - chr3_4:74384023-74384042 None:intergenic 45.0%
GGATTCCAAGAACATGGCTT+GGG + chr3_4:74384022-74384041 Msa0521510:CDS 45.0%
GGGAAGAGGTTCTTTGAATG+AGG + chr3_4:74384073-74384092 Msa0521510:CDS 45.0%
TGTTAATGGAGGACATGTGG+AGG + chr3_4:74384145-74384164 Msa0521510:CDS 45.0%
TGAGATTGAACCCAAGACAC+CGG + chr3_4:74384169-74384188 Msa0521510:CDS 45.0%
TCAACTTTCTCCGGTGTCTT+GGG - chr3_4:74384182-74384201 None:intergenic 45.0%
GGAGCATGAACATGTACATG+AGG + chr3_4:74384220-74384239 Msa0521510:CDS 45.0%
TCTAATTTCGCTGATGGTCG+GGG + chr3_4:74384440-74384459 Msa0521510:CDS 45.0%
! GTGCCCGCGATTTAAAACTT+TGG - chr3_4:74384533-74384552 None:intergenic 45.0%
! AAAGGTCTAGGACCGCAATT+TGG - chr3_4:74384579-74384598 None:intergenic 45.0%
GGAATTGACATGCAAGGTTG+AGG + chr3_4:74384644-74384663 Msa0521510:intron 45.0%
! GGACTCAACAGTTTCTGAAG+TGG + chr3_4:74385214-74385233 Msa0521510:CDS 45.0%
ATCGGTTACTACTAGGATGC+TGG - chr3_4:74385501-74385520 None:intergenic 45.0%
CTTTCAGGATGGCCAATATG+TGG + chr3_4:74385844-74385863 Msa0521510:intron 45.0%
TGAGCCAGCTATAAAGAGCT+TGG - chr3_4:74386055-74386074 None:intergenic 45.0%
!!! ATTGGTGGATTTTGGGCTCT+TGG - chr3_4:74386131-74386150 None:intergenic 45.0%
!!! GGCTTGGATTGGTGGATTTT+GGG - chr3_4:74386138-74386157 None:intergenic 45.0%
! TAAAGAAGGGCTTGGATTGG+TGG - chr3_4:74386146-74386165 None:intergenic 45.0%
GCATAAAGAAGGGCTTGGAT+TGG - chr3_4:74386149-74386168 None:intergenic 45.0%
TCCAAGCCCTTCTTTATGCA+TGG + chr3_4:74386150-74386169 Msa0521510:CDS 45.0%
CCCTTCGTTGTAAATGCTTC+TGG - chr3_4:74386349-74386368 None:intergenic 45.0%
ACAAACTGCTTCTCCGAGAT+CGG - chr3_4:74386413-74386432 None:intergenic 45.0%
GTGAGGATGCAGCTTAACTT+AGG - chr3_4:74386695-74386714 None:intergenic 45.0%
!! GTATGCTGCTTTCTTGTGTG+AGG - chr3_4:74386712-74386731 None:intergenic 45.0%
GAGAGGACAGAAGAGAGAGA+AGG - chr3_4:74383399-74383418 None:intergenic 50.0%
!! GGTTGGTGACAAAGAGAGAG+AGG - chr3_4:74383416-74383435 None:intergenic 50.0%
AGCATAACCTGAATGACCGG+CGG - chr3_4:74383628-74383647 None:intergenic 50.0%
GAGAAATTAGGCGGAAGAGG+CGG - chr3_4:74383792-74383811 None:intergenic 50.0%
GGTGAGAAATTAGGCGGAAG+AGG - chr3_4:74383795-74383814 None:intergenic 50.0%
GAAGCCGGTGAGAAATTAGG+CGG - chr3_4:74383801-74383820 None:intergenic 50.0%
! ACAGAGCGTTTGAGAGAAGC+CGG - chr3_4:74383816-74383835 None:intergenic 50.0%
TGTAACTGCAACGACACAGG+CGG - chr3_4:74383846-74383865 None:intergenic 50.0%
TGCTGTAACTGCAACGACAC+AGG - chr3_4:74383849-74383868 None:intergenic 50.0%
CAGTTACAGCACCGCAAGAT+CGG + chr3_4:74383858-74383877 Msa0521510:CDS 50.0%
TAATTCCACCGCCGATCTTG+CGG - chr3_4:74383872-74383891 None:intergenic 50.0%
AAGATCGGCGGTGGAATTAG+TGG + chr3_4:74383873-74383892 Msa0521510:CDS 50.0%
GAAGAGGTGGAAGAAGGGAA+AGG + chr3_4:74383912-74383931 Msa0521510:CDS 50.0%
CGCCATCTTCTCCTTCTTCT+GGG + chr3_4:74383970-74383989 Msa0521510:CDS 50.0%
CTCCCAGAAGAAGGAGAAGA+TGG - chr3_4:74383975-74383994 None:intergenic 50.0%
TTCTTGGAATCCGGCAAAGG+CGG - chr3_4:74384014-74384033 None:intergenic 50.0%
CGGATTCCAAGAACATGGCT+TGG + chr3_4:74384021-74384040 Msa0521510:CDS 50.0%
CTCAACTTTCTCCGGTGTCT+TGG - chr3_4:74384183-74384202 None:intergenic 50.0%
CAAGACACCGGAGAAAGTTG+AGG + chr3_4:74384181-74384200 Msa0521510:CDS 50.0%
! AAGGGTGTATCCAATGGGGA+GGG + chr3_4:74384746-74384765 Msa0521510:CDS 50.0%
! ATCTTTTCCACCCTCCCCAT+TGG - chr3_4:74384759-74384778 None:intergenic 50.0%
CTGAACAAGCAGAAGAAGCG+TGG + chr3_4:74385110-74385129 Msa0521510:CDS 50.0%
! GGCGCCAGTGTTGAATCATT+AGG + chr3_4:74385131-74385150 Msa0521510:CDS 50.0%
!!! GGGCTTGGATTGGTGGATTT+TGG - chr3_4:74386139-74386158 None:intergenic 50.0%
GCCATGCATAAAGAAGGGCT+TGG - chr3_4:74386154-74386173 None:intergenic 50.0%
GACGATCATACTTCAGCAGG+AGG + chr3_4:74386244-74386263 Msa0521510:CDS 50.0%
!!! GCAAGCGAGTTTTGAGACTC+TGG - chr3_4:74386517-74386536 None:intergenic 50.0%
GAGTATAATCCGATAGCGCG+CGG - chr3_4:74386550-74386569 None:intergenic 50.0%
AGTTTCGCCGTGAGCGTAGT+CGG - chr3_4:74383682-74383701 None:intergenic 55.0%
GGATCAGAATGAAGAGGCGG+TGG - chr3_4:74383729-74383748 None:intergenic 55.0%
TCCTAAACCTCCACCGCCTT+TGG + chr3_4:74383746-74383765 Msa0521510:CDS 55.0%
TCCAAAGGCGGTGGAGGTTT+AGG - chr3_4:74383750-74383769 None:intergenic 55.0%
GATTCTTCCAAAGGCGGTGG+AGG - chr3_4:74383756-74383775 None:intergenic 55.0%
AGGGATTCTTCCAAAGGCGG+TGG - chr3_4:74383759-74383778 None:intergenic 55.0%
GGGAGGGATTCTTCCAAAGG+CGG - chr3_4:74383762-74383781 None:intergenic 55.0%
GGAGGGAGGGATTCTTCCAA+AGG - chr3_4:74383765-74383784 None:intergenic 55.0%
AAATTAGGCGGAAGAGGCGG+TGG - chr3_4:74383789-74383808 None:intergenic 55.0%
TTACAGCACCGCAAGATCGG+CGG + chr3_4:74383861-74383880 Msa0521510:CDS 55.0%
ATCGGCGGTGGAATTAGTGG+TGG + chr3_4:74383876-74383895 Msa0521510:CDS 55.0%
GAGGTGGAAGAAGGGAAAGG+CGG + chr3_4:74383915-74383934 Msa0521510:CDS 55.0%
GCGCCATCTTCTCCTTCTTC+TGG + chr3_4:74383969-74383988 Msa0521510:CDS 55.0%
! CAAGGGTGTATCCAATGGGG+AGG + chr3_4:74384745-74384764 Msa0521510:CDS 55.0%
GGTGCGGTCGTAATGATGCT+TGG - chr3_4:74385958-74385977 None:intergenic 55.0%
CATTCCAAAGCTGCACGGTG+CGG - chr3_4:74385974-74385993 None:intergenic 55.0%
!! GGTGGATTTTGGGCTCTTGG+CGG - chr3_4:74386128-74386147 None:intergenic 55.0%
GCAGATTTCGCTAGCTCGTC+AGG - chr3_4:74386197-74386216 None:intergenic 55.0%
AAGTCGATTGCCCACGCTCA+AGG + chr3_4:74386599-74386618 Msa0521510:CDS 55.0%
GTGAGCGTAGTCGGAGAGAG+CGG - chr3_4:74383673-74383692 None:intergenic 60.0%
GCTCTCTCCGACTACGCTCA+CGG + chr3_4:74383672-74383691 Msa0521510:CDS 60.0%
GGCGGTGGAATTAGTGGTGG+AGG + chr3_4:74383879-74383898 Msa0521510:CDS 60.0%
GGGAAAGGCGGTGATGCTGA+TGG + chr3_4:74383927-74383946 Msa0521510:CDS 60.0%
GAAGGAGAAGATGGCGCGTG+AGG - chr3_4:74383966-74383985 None:intergenic 60.0%
TTGGAATCCGGCAAAGGCGG+TGG - chr3_4:74384011-74384030 None:intergenic 60.0%
GGTGTATCCAATGGGGAGGG+TGG + chr3_4:74384749-74384768 Msa0521510:CDS 60.0%
TGAGCTCTTCCGCGCGCTAT+CGG + chr3_4:74386538-74386557 Msa0521510:CDS 60.0%
TCGATTGCCCACGCTCAAGG+TGG + chr3_4:74386602-74386621 Msa0521510:CDS 60.0%
ATTGCCCACGCTCAAGGTGG+TGG + chr3_4:74386605-74386624 Msa0521510:CDS 60.0%
!! GGCGGCGAAGGCATTACGAG+CGG - chr3_4:74383610-74383629 None:intergenic 65.0%
GCTCGTAATGCCTTCGCCGC+CGG + chr3_4:74383609-74383628 Msa0521510:CDS 65.0%
ACCTGAATGACCGGCGGCGA+AGG - chr3_4:74383622-74383641 None:intergenic 65.0%
AAGAGGCGGTGGAGGAGGGA+GGG - chr3_4:74383778-74383797 None:intergenic 65.0%
TTAGGCGGAAGAGGCGGTGG+AGG - chr3_4:74383786-74383805 None:intergenic 65.0%
GAATCCGGCAAAGGCGGTGG+CGG - chr3_4:74384008-74384027 None:intergenic 65.0%
ACGACCGCACCGTGCAGCTT+TGG + chr3_4:74385967-74385986 Msa0521510:CDS 65.0%
GATAGCGCGCGGAAGAGCTC+AGG - chr3_4:74386539-74386558 None:intergenic 65.0%
CGCACCACCACCTTGAGCGT+GGG - chr3_4:74386612-74386631 None:intergenic 65.0%
! CCACGCTCAAGGTGGTGGTG+CGG + chr3_4:74386610-74386629 Msa0521510:CDS 65.0%
GCCTTCGCCGCCGGTCATTC+AGG + chr3_4:74383618-74383637 Msa0521510:CDS 70.0%
GTAGTCGGAGAGAGCGGCGC+CGG - chr3_4:74383667-74383686 None:intergenic 70.0%
GAAGAGGCGGTGGAGGAGGG+AGG - chr3_4:74383779-74383798 None:intergenic 70.0%
GCGGAAGAGGCGGTGGAGGA+GGG - chr3_4:74383782-74383801 None:intergenic 70.0%
CAGCACCGCAAGATCGGCGG+TGG + chr3_4:74383864-74383883 Msa0521510:CDS 70.0%
GATGCCGCCACCGCCTTTGC+CGG + chr3_4:74384001-74384020 Msa0521510:CDS 70.0%
CCGCACCACCACCTTGAGCG+TGG - chr3_4:74386613-74386632 None:intergenic 70.0%
GGCGGAAGAGGCGGTGGAGG+AGG - chr3_4:74383783-74383802 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 74383356 74386876 74383356 ID=Msa0521510;Name=Msa0521510
chr3_4 mRNA 74383356 74386876 74383356 ID=Msa0521510-mRNA-1;Parent=Msa0521510;Name=Msa0521510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=166|0.75|0.6|1|1|1|5|239|695
chr3_4 exon 74383356 74384461 74383356 ID=Msa0521510-mRNA-1:exon:21008;Parent=Msa0521510-mRNA-1
chr3_4 exon 74384690 74384865 74384690 ID=Msa0521510-mRNA-1:exon:21009;Parent=Msa0521510-mRNA-1
chr3_4 exon 74385065 74385169 74385065 ID=Msa0521510-mRNA-1:exon:21010;Parent=Msa0521510-mRNA-1
chr3_4 exon 74385209 74385288 74385209 ID=Msa0521510-mRNA-1:exon:21011;Parent=Msa0521510-mRNA-1
chr3_4 exon 74385851 74386876 74385851 ID=Msa0521510-mRNA-1:exon:21012;Parent=Msa0521510-mRNA-1
chr3_4 five_prime_UTR 74383356 74383521 74383356 ID=Msa0521510-mRNA-1:five_prime_utr;Parent=Msa0521510-mRNA-1
chr3_4 CDS 74383522 74384461 74383522 ID=Msa0521510-mRNA-1:cds;Parent=Msa0521510-mRNA-1
chr3_4 CDS 74384690 74384865 74384690 ID=Msa0521510-mRNA-1:cds;Parent=Msa0521510-mRNA-1
chr3_4 CDS 74385065 74385169 74385065 ID=Msa0521510-mRNA-1:cds;Parent=Msa0521510-mRNA-1
chr3_4 CDS 74385209 74385288 74385209 ID=Msa0521510-mRNA-1:cds;Parent=Msa0521510-mRNA-1
chr3_4 CDS 74385851 74386637 74385851 ID=Msa0521510-mRNA-1:cds;Parent=Msa0521510-mRNA-1
chr3_4 three_prime_UTR 74386638 74386876 74386638 ID=Msa0521510-mRNA-1:three_prime_utr;Parent=Msa0521510-mRNA-1
Gene Sequence

>Msa0521510

ATGGGTTGCGCTCAATCACGCATAGACAATGAAGAATCAGTAGCACGTTGCAAAGACCGCAAAAACTTAATGCGTGAAGCTGTCGCCGCTCGTAATGCCTTCGCCGCCGGTCATTCAGGTTATGCTATGGCTCTCAAAAACACCGGCGCCGCTCTCTCCGACTACGCTCACGGCGAAACTCATCTCGACGACATTGAGCTTCATCCACCGCCTCTTCATTCTGATCCTAAACCTCCACCGCCTTTGGAAGAATCCCTCCCTCCTCCACCGCCTCTTCCGCCTAATTTCTCACCGGCTTCTCTCAAACGCTCTGTAACATTGCCGCCTGTGTCGTTGCAGTTACAGCACCGCAAGATCGGCGGTGGAATTAGTGGTGGAGGTGACATTGTTGAAGAGGTGGAAGAAGGGAAAGGCGGTGATGCTGATGGACAAGTTCACGCGCCTCACGCGCCATCTTCTCCTTCTTCTGGGAGTAAAGTGATGCCGCCACCGCCTTTGCCGGATTCCAAGAACATGGCTTGGGATTATTTCTTTATGGATATGGATAATATGGGAAGAGGTTCTTTGAATGAGGAAGATGAGATTGAGAATGAAGAAGGTGAAATTGAAGGTGAGAATGTTGATGTTAATGGAGGACATGTGGAGGATGAGATTGAACCCAAGACACCGGAGAAAGTTGAGGTTGATGTGTATAATAAGGAGCATGAACATGTACATGAGGATGATGTGATAAGAGAGGCTACACATATTATTGAACATTCTAAAACTGCTCCTGCTGAGTTTAGAAGAGCAATTAAGGTGGTTCCTTCTGTTACCCTTATGCAGATTCTTAGTTCTCTTGATGATCATTTTCTTAAAGCTTCTGAGACTGCTCAAGATGTTTCTAAGATGCTTGAAGCTACTAGGTTGCATTATCATTCTAATTTCGCTGATGGTCGGGGTCACATTGATCATTCTGCTAGAGTCATGCAAGTGATAACATGGAATCGGTCATTCAAGGGTGTATCCAATGGGGAGGGTGGAAAAGATGATTTTGACTCTGAAGATAAAGAAACACATGCCACTGTTTTGGACAAGTTGTTAGCATGGGAAAAGAAACTCTATGAAGAAGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAAAGAAAAGTTGCAATTCTGAACAAGCAGAAGAAGCGTGGCGCCAGTGTTGAATCATTAGGAAAAACTAAAGCGGCCTCGATGGACTCAACAGTTTCTGAAGTGGACCATATTCGCGATTCTCAGTTGTATCCAAAACTTGTTGCTCTTGTTATTGGGATGGCCAATATGTGGGAGAATATGTTCATGCATCATGACAGCCAGCTGAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAAGATCATAAGGAAACAACCAAGCATCATTACGACCGCACCGTGCAGCTTTGGAATGTAATCCAAGAATGGGAGTCACAATTTGAGAAGCTTGTGACTCAACAGAAGCATTACATCCAAGCTCTTTATAGCTGGCTCAAGTTAAATCTCATTCCCATCGAAAGCAACCTAAAAGAAAAAATCTCGTCTCCGCCAAGAGCCCAAAATCCACCAATCCAAGCCCTTCTTTATGCATGGCATGATTATCTCGACAAGCTTCCTGACGAGCTAGCGAAATCTGCTATTACCTCATTTTCTGCAGTGATAAAGACGATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAAATGTGAGGAAACTAGAAAGGAATTCTTGAGGAAAAACCAAGCTTTTGAAGAATGGTACCAGAAGCATTTACAACGAAGGGGGCCCGATGATCTAGAAAGAGATGATGTAAATACAAACAATCCGATCTCGGAGAAGCAGTTTGTCGTTGAGAGCTTGAAGAAGAGATTAGAAGAAGAAACTGAATCTCACAAAAAATTGTGTGTTCAAGTAAGAGAGAAATCACTCCAGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGCGCGCTATCGGATTATACTCATGCGTGTTCTGATGCTTATGAGAAACTGAAGTCGATTGCCCACGCTCAAGGTGGTGGTGCGGCGTGA

Protein sequence

>Msa0521510

MGCAQSRIDNEESVARCKDRKNLMREAVAARNAFAAGHSGYAMALKNTGAALSDYAHGETHLDDIELHPPPLHSDPKPPPPLEESLPPPPPLPPNFSPASLKRSVTLPPVSLQLQHRKIGGGISGGGDIVEEVEEGKGGDADGQVHAPHAPSSPSSGSKVMPPPPLPDSKNMAWDYFFMDMDNMGRGSLNEEDEIENEEGEIEGENVDVNGGHVEDEIEPKTPEKVEVDVYNKEHEHVHEDDVIREATHIIEHSKTAPAEFRRAIKVVPSVTLMQILSSLDDHFLKASETAQDVSKMLEATRLHYHSNFADGRGHIDHSARVMQVITWNRSFKGVSNGEGGKDDFDSEDKETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLGKTKAASMDSTVSEVDHIRDSQLYPKLVALVIGMANMWENMFMHHDSQLKIVTDLKSLDISQDHKETTKHHYDRTVQLWNVIQEWESQFEKLVTQQKHYIQALYSWLKLNLIPIESNLKEKISSPPRAQNPPIQALLYAWHDYLDKLPDELAKSAITSFSAVIKTIILQQEEEMKLKEKCEETRKEFLRKNQAFEEWYQKHLQRRGPDDLERDDVNTNNPISEKQFVVESLKKRLEEETESHKKLCVQVREKSLQSLKTRLPELFRALSDYTHACSDAYEKLKSIAHAQGGGAA*