Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608220 | XP_013456651.3 | 90.952 | 210 | 18 | 1 | 3 | 211 | 266 | 475 | 1.30e-132 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608220 | sp|Q9M3B3|WSD4_ARATH | 27.749 | 191 | 125 | 4 | 3 | 182 | 272 | 460 | 4.86e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608220 | A0A072ULU8 | 90.952 | 210 | 18 | 1 | 3 | 211 | 258 | 467 | 9.14e-133 | 390 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608220 | Msa0648540 | 0.801067 | 1.072434e-48 | -8.615850e-47 |
| Msa0608220 | Msa0691070 | 0.812995 | 3.201863e-51 | -8.615850e-47 |
| Msa0242540 | Msa0608220 | 0.819808 | 9.560463e-53 | -8.615850e-47 |
| Msa0280750 | Msa0608220 | 0.832216 | 1.072871e-55 | -8.615850e-47 |
| Msa0554130 | Msa0608220 | 0.855741 | 5.147307e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608220 | MtrunA17_Chr4g0040001 | 88.571 | 210 | 23 | 1 | 3 | 211 | 258 | 467 | 4.98e-130 | 374 |
| Msa0608220 | MtrunA17_Chr4g0040231 | 79.524 | 210 | 42 | 1 | 3 | 211 | 258 | 467 | 2.09e-117 | 342 |
| Msa0608220 | MtrunA17_Chr4g0040221 | 75.238 | 210 | 48 | 2 | 3 | 211 | 256 | 462 | 4.18e-113 | 331 |
| Msa0608220 | MtrunA17_Chr4g0040011 | 83.815 | 173 | 27 | 1 | 3 | 174 | 266 | 438 | 1.60e-99 | 296 |
| Msa0608220 | MtrunA17_Chr4g0040261 | 59.048 | 210 | 85 | 1 | 3 | 211 | 286 | 495 | 3.81e-93 | 281 |
| Msa0608220 | MtrunA17_Chr4g0040251 | 56.731 | 208 | 89 | 1 | 3 | 209 | 253 | 460 | 2.56e-85 | 260 |
| Msa0608220 | MtrunA17_Chr7g0217051 | 53.555 | 211 | 96 | 2 | 3 | 211 | 255 | 465 | 7.68e-79 | 243 |
| Msa0608220 | MtrunA17_Chr4g0040271 | 60.976 | 164 | 63 | 1 | 3 | 165 | 252 | 415 | 1.06e-69 | 218 |
| Msa0608220 | MtrunA17_Chr7g0248011 | 47.059 | 204 | 106 | 2 | 3 | 205 | 255 | 457 | 5.72e-60 | 194 |
| Msa0608220 | MtrunA17_Chr6g0457271 | 52.121 | 165 | 77 | 2 | 3 | 165 | 194 | 358 | 1.89e-57 | 185 |
| Msa0608220 | MtrunA17_Chr6g0457281 | 43.802 | 121 | 64 | 2 | 3 | 119 | 169 | 289 | 5.74e-32 | 117 |
| Msa0608220 | MtrunA17_Chr5g0393471 | 28.713 | 202 | 141 | 2 | 3 | 201 | 128 | 329 | 6.29e-23 | 94.4 |
| Msa0608220 | MtrunA17_Chr6g0457291 | 55.224 | 67 | 30 | 0 | 143 | 209 | 1 | 67 | 7.17e-19 | 77.8 |
| Msa0608220 | MtrunA17_Chr1g0147071 | 25.728 | 206 | 137 | 4 | 3 | 194 | 254 | 457 | 3.32e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608220 | AT3G49190.1 | 27.749 | 191 | 125 | 4 | 3 | 182 | 272 | 460 | 4.94e-17 | 79.3 |
| Msa0608220 | AT3G49210.1 | 24.891 | 229 | 149 | 6 | 3 | 211 | 286 | 511 | 6.86e-16 | 75.9 |
| Msa0608220 | AT5G53390.1 | 24.658 | 219 | 153 | 4 | 3 | 211 | 262 | 478 | 7.23e-16 | 75.9 |
| Msa0608220 | AT3G49200.1 | 25.728 | 206 | 139 | 5 | 3 | 197 | 284 | 486 | 1.23e-15 | 75.1 |
| Msa0608220 | AT5G16350.3 | 26.531 | 196 | 136 | 4 | 3 | 197 | 254 | 442 | 1.43e-15 | 75.1 |
| Msa0608220 | AT5G22490.1 | 25.481 | 208 | 136 | 4 | 3 | 194 | 253 | 457 | 2.49e-15 | 74.3 |
| Msa0608220 | AT5G12420.1 | 24.286 | 210 | 141 | 4 | 3 | 197 | 254 | 460 | 5.37e-15 | 73.2 |
| Msa0608220 | AT5G16350.1 | 25.000 | 212 | 139 | 4 | 3 | 197 | 254 | 462 | 4.85e-13 | 67.8 |
| Msa0608220 | AT5G12420.2 | 24.571 | 175 | 115 | 3 | 3 | 162 | 254 | 426 | 1.20e-12 | 66.6 |
| Msa0608220 | AT2G38995.1 | 23.744 | 219 | 153 | 5 | 4 | 211 | 74 | 289 | 2.01e-12 | 65.1 |
| Msa0608220 | AT2G38995.3 | 23.744 | 219 | 153 | 5 | 4 | 211 | 195 | 410 | 3.54e-12 | 65.1 |
| Msa0608220 | AT2G38995.2 | 23.744 | 219 | 153 | 5 | 4 | 211 | 264 | 479 | 4.12e-12 | 65.1 |
| Msa0608220 | AT5G37300.1 | 23.464 | 179 | 127 | 2 | 4 | 174 | 259 | 435 | 2.47e-11 | 62.8 |
| Msa0608220 | AT5G37300.4 | 23.464 | 179 | 127 | 2 | 4 | 174 | 277 | 453 | 2.67e-11 | 62.4 |
| Msa0608220 | AT1G72110.1 | 25.414 | 181 | 124 | 3 | 3 | 174 | 255 | 433 | 2.76e-11 | 62.4 |
Find 53 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGAGAAACTAGCATAAT+AGG | 0.205337 | 4_2:+55233987 | None:intergenic |
| TTGGCAAACCATCCAGTAAA+TGG | 0.227217 | 4_2:-55234814 | Msa0608220:CDS |
| CTATTACCACCACCTAATTA+TGG | 0.235827 | 4_2:-55233969 | Msa0608220:three_prime_UTR |
| CCAACCCTCTTGAGTTTGTT+TGG | 0.247573 | 4_2:-55235148 | Msa0608220:CDS |
| TGTAGCTTTGCTCATGGATT+TGG | 0.268046 | 4_2:-55235075 | Msa0608220:CDS |
| AACCAGAGTGCAAAGGTCTT+TGG | 0.282055 | 4_2:-55235231 | Msa0608220:CDS |
| ATGACTTAAAGTCCATAATT+AGG | 0.287806 | 4_2:+55233957 | None:intergenic |
| ACCAGAGTGCAAAGGTCTTT+GGG | 0.288027 | 4_2:-55235230 | Msa0608220:CDS |
| GTGAAATACAATCCATTTAC+TGG | 0.318043 | 4_2:+55234802 | None:intergenic |
| AATCGCCATGAAAACCAAAA+AGG | 0.323627 | 4_2:-55234129 | Msa0608220:CDS |
| AAAATAATCTACAACACAAT+TGG | 0.333891 | 4_2:-55234889 | Msa0608220:CDS |
| GTTTGTGGAATGGTCTTCTA+TGG | 0.338920 | 4_2:-55235370 | Msa0608220:CDS |
| GAATGGTCTTCTATGGTATT+AGG | 0.354558 | 4_2:-55235363 | Msa0608220:CDS |
| ATGCTCAACACAAGAAATAT+TGG | 0.356933 | 4_2:-55235283 | Msa0608220:CDS |
| TTTGCATTTCCTTCACTGAT+TGG | 0.357490 | 4_2:+55235254 | None:intergenic |
| GTCATGCAAGCCACTATGTT+TGG | 0.367375 | 4_2:-55233939 | Msa0608220:three_prime_UTR |
| GATTGGCTTACTTTAGGTAT+TGG | 0.377077 | 4_2:+55235179 | None:intergenic |
| AGCAATAACTATTGCATCAA+TGG | 0.392723 | 4_2:+55233888 | None:intergenic |
| CTACTATTTAAATTGTACTT+TGG | 0.426542 | 4_2:-55233867 | Msa0608220:three_prime_UTR |
| CTTTCTCTTGATTAGTTCAC+GGG | 0.438535 | 4_2:+55235121 | None:intergenic |
| ATAGAGAAACTAGCATAATA+GGG | 0.441271 | 4_2:+55233988 | None:intergenic |
| CTATGGTATTAGGCTTTACA+TGG | 0.446543 | 4_2:-55235353 | Msa0608220:CDS |
| CCCCAAAGACCTTTGCACTC+TGG | 0.446961 | 4_2:+55235229 | None:intergenic |
| GATTTGGAGATGAGATTAAG+AGG | 0.447085 | 4_2:-55235059 | Msa0608220:CDS |
| AAATAATCTACAACACAATT+GGG | 0.449065 | 4_2:-55234888 | Msa0608220:CDS |
| TTATCTTGTAGCTTTGCTCA+TGG | 0.454159 | 4_2:-55235081 | Msa0608220:CDS |
| TCTTTCTCTTGATTAGTTCA+CGG | 0.458319 | 4_2:+55235120 | None:intergenic |
| ATACCTAAAGTAAGCCAATC+AGG | 0.461708 | 4_2:-55235176 | Msa0608220:intron |
| GGATTGTATTTCACAGCGAC+AGG | 0.474947 | 4_2:-55234793 | Msa0608220:CDS |
| ACTATAAACGATGTGGTTTG+TGG | 0.485396 | 4_2:-55235385 | Msa0608220:CDS |
| ATTGAAAATGCCAAACATAG+TGG | 0.527913 | 4_2:+55233929 | None:intergenic |
| GCATAATAGGGTGATGGCAA+TGG | 0.529822 | 4_2:+55234000 | None:intergenic |
| GAGGGTTGGAGATACCTGAT+TGG | 0.534115 | 4_2:+55235162 | None:intergenic |
| AATACAATCCATTTACTGGA+TGG | 0.534184 | 4_2:+55234806 | None:intergenic |
| AATCATATTCAAAGCAGCTA+TGG | 0.554384 | 4_2:-55234057 | Msa0608220:CDS |
| CCAAACAAACTCAAGAGGGT+TGG | 0.570642 | 4_2:+55235148 | None:intergenic |
| CCAGAGTGCAAAGGTCTTTG+GGG | 0.576472 | 4_2:-55235229 | Msa0608220:CDS |
| AAACGATGTGGTTTGTGGAA+TGG | 0.576850 | 4_2:-55235380 | Msa0608220:CDS |
| CTCAACACAAGAAATATTGG+AGG | 0.579193 | 4_2:-55235280 | Msa0608220:CDS |
| AAACTAGCATAATAGGGTGA+TGG | 0.584421 | 4_2:+55233994 | None:intergenic |
| TTGTATTTCACAGCGACAGG+TGG | 0.591285 | 4_2:-55234790 | Msa0608220:CDS |
| TAAAGTCCATAATTAGGTGG+TGG | 0.591671 | 4_2:+55233963 | None:intergenic |
| GAATTCCAAACAAACTCAAG+AGG | 0.614444 | 4_2:+55235143 | None:intergenic |
| AAGAGCAAATTCCACAGCAG+TGG | 0.634903 | 4_2:-55235308 | Msa0608220:CDS |
| TGGAGGTTACCAATCAGTGA+AGG | 0.641441 | 4_2:-55235263 | Msa0608220:CDS |
| CAGAGTGCAAAGGTCTTTGG+GGG | 0.647099 | 4_2:-55235228 | Msa0608220:CDS |
| GTTCTTATGTCTAACCTCGT+AGG | 0.647799 | 4_2:-55234856 | Msa0608220:CDS |
| CACAGCGACAGGTGGACCTG+AGG | 0.647966 | 4_2:-55234782 | Msa0608220:intron |
| AATTCCAAACAAACTCAAGA+GGG | 0.648821 | 4_2:+55235144 | None:intergenic |
| GTTGAGCATTACCACTGCTG+TGG | 0.649328 | 4_2:+55235297 | None:intergenic |
| GTTGCAGACTATAAACGATG+TGG | 0.656901 | 4_2:-55235392 | Msa0608220:intron |
| GATGAGATTAAGAGGACCTG+AGG | 0.656997 | 4_2:-55235051 | Msa0608220:intron |
| ACTTAAAGTCCATAATTAGG+TGG | 0.667564 | 4_2:+55233960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTTTTTTAT+AGG | - | chr4_2:55235109-55235128 | Msa0608220:CDS | 0.0% |
| !!! | TATTTTTTATTTTTTTTATA+GGG | - | chr4_2:55235110-55235129 | Msa0608220:CDS | 0.0% |
| !!! | TTATTTTTTATTTTTTTATA+GGG | + | chr4_2:55236519-55236538 | None:intergenic | 0.0% |
| !!! | ATTATTTTTTATTTTTTTAT+AGG | + | chr4_2:55236520-55236539 | None:intergenic | 0.0% |
| !! | AAAAAGAAAAAAGATAAAAA+AGG | + | chr4_2:55233942-55233961 | None:intergenic | 10.0% |
| !! | CAAATAACAAATATTAAAAA+AGG | + | chr4_2:55234296-55234315 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAATTTTTACAG+GGG | + | chr4_2:55236428-55236447 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTAAAAAAATGC+TGG | - | chr4_2:55235254-55235273 | Msa0608220:CDS | 10.0% |
| !!! | TTTTTCGAAATTTAAAAAAT+TGG | - | chr4_2:55235564-55235583 | Msa0608220:intron | 10.0% |
| !!! | GAAAATTTTAAAAAAAATTC+TGG | + | chr4_2:55236394-55236413 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAATTTTTACAG+GGG | - | chr4_2:55236428-55236447 | Msa0608220:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | + | chr4_2:55236781-55236800 | None:intergenic | 10.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | + | chr4_2:55236782-55236801 | None:intergenic | 10.0% |
| !!! | AAAGTTTATTTTTATTAACA+AGG | - | chr4_2:55237044-55237063 | Msa0608220:intron | 10.0% |
| !!! | AAGTTTATTTTTATTAACAA+GGG | - | chr4_2:55237045-55237064 | Msa0608220:intron | 10.0% |
| !!! | AAAAAAAACATCAAAATTTT+AGG | + | chr4_2:55237836-55237855 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTTAATACAATTG+AGG | - | chr4_2:55233952-55233971 | Msa0608220:three_prime_UTR | 15.0% |
| !! | GAAAGTTTATAAAAATTGTT+TGG | - | chr4_2:55234127-55234146 | Msa0608220:CDS | 15.0% |
| !! | AATATTGCATAATATATGTA+GGG | + | chr4_2:55234481-55234500 | None:intergenic | 15.0% |
| !! | AAATATTGCATAATATATGT+AGG | + | chr4_2:55234482-55234501 | None:intergenic | 15.0% |
| !!! | CAGATAAAATATATTTTCAA+TGG | - | chr4_2:55234740-55234759 | Msa0608220:intron | 15.0% |
| !! | AAAGTACAGTATTTAAATTT+AGG | - | chr4_2:55234880-55234899 | Msa0608220:CDS | 15.0% |
| !! | AAGTACAGTATTTAAATTTA+GGG | - | chr4_2:55234881-55234900 | Msa0608220:CDS | 15.0% |
| !!! | ATTTTTAAAATTTTTACAGG+GGG | + | chr4_2:55236429-55236448 | None:intergenic | 15.0% |
| !! | TAAAAAATTGGAAAAAAGTT+CGG | - | chr4_2:55235576-55235595 | Msa0608220:intron | 15.0% |
| !! | TAGAAGATATTTAAAAATAC+TGG | - | chr4_2:55235614-55235633 | Msa0608220:intron | 15.0% |
| !! | AAATTACTGAAGAATAAAAT+TGG | - | chr4_2:55235976-55235995 | Msa0608220:intron | 15.0% |
| !! | TAAATCATATGATTGTTAAT+CGG | - | chr4_2:55236071-55236090 | Msa0608220:intron | 15.0% |
| !! | ATAAACTATAATAACTTTCA+TGG | - | chr4_2:55236221-55236240 | Msa0608220:intron | 15.0% |
| !!! | ATTTTTAAAATTTTTACAGG+GGG | - | chr4_2:55236429-55236448 | Msa0608220:intron | 15.0% |
| !!! | TTTTTGACTAACATTAATTT+CGG | - | chr4_2:55236867-55236886 | Msa0608220:intron | 15.0% |
| !! | TTATACAAAAAGTTATACAT+TGG | - | chr4_2:55237379-55237398 | Msa0608220:intron | 15.0% |
| !! | ATTAAGTTTGATTAACTAAT+TGG | - | chr4_2:55237402-55237421 | Msa0608220:intron | 15.0% |
| !!! | ATTAATGTTCTCTATTTTAT+TGG | - | chr4_2:55237898-55237917 | Msa0608220:intron | 15.0% |
| !!! | TTAATGTTCTCTATTTTATT+GGG | - | chr4_2:55237899-55237918 | Msa0608220:intron | 15.0% |
| !! | TCACAATTGTATATATTTAT+TGG | - | chr4_2:55238509-55238528 | Msa0608220:intron | 15.0% |
| !! | ATTGACAATTAAACTAACTT+AGG | + | chr4_2:55234359-55234378 | None:intergenic | 20.0% |
| !!! | ATTTTTAAGGTGAATAAGTA+GGG | - | chr4_2:55234434-55234453 | Msa0608220:intron | 20.0% |
| !! | ATATTGCATAATATATGTAG+GGG | + | chr4_2:55234480-55234499 | None:intergenic | 20.0% |
| !! | AAATCTTTATATTACAAGGT+TGG | + | chr4_2:55234978-55234997 | None:intergenic | 20.0% |
| !!! | TTTTTGCGAAATAAAAAAAC+TGG | - | chr4_2:55235671-55235690 | Msa0608220:intron | 20.0% |
| !! | ATATGATTAGAGAAATGATT+AGG | - | chr4_2:55236006-55236025 | Msa0608220:intron | 20.0% |
| !! | GATTAACAATCATATGATTT+AGG | + | chr4_2:55236072-55236091 | None:intergenic | 20.0% |
| !! | GGAATTATAATTAGAGAAAA+GGG | + | chr4_2:55236144-55236163 | None:intergenic | 20.0% |
| !! | TTCCCTAAAATCAATTATAT+TGG | - | chr4_2:55236160-55236179 | Msa0608220:intron | 20.0% |
| !! | TCCCTAAAATCAATTATATT+GGG | - | chr4_2:55236161-55236180 | Msa0608220:intron | 20.0% |
| !!! | ACCCAATATAATTGATTTTA+GGG | + | chr4_2:55236165-55236184 | None:intergenic | 20.0% |
| !!! | TACCCAATATAATTGATTTT+AGG | + | chr4_2:55236166-55236185 | None:intergenic | 20.0% |
| !! | TAACTAATTCCTTTATGATT+GGG | + | chr4_2:55236275-55236294 | None:intergenic | 20.0% |
| !!! | TTTTGACTAACATTAATTTC+GGG | - | chr4_2:55236868-55236887 | Msa0608220:intron | 20.0% |
| !! | TAATTAACAAAACTTGATTC+TGG | + | chr4_2:55237312-55237331 | None:intergenic | 20.0% |
| !! | ATAATCCAATGATATGATTA+CGG | + | chr4_2:55237360-55237379 | None:intergenic | 20.0% |
| !! | AAAATAATCTACAACACAAT+TGG | - | chr4_2:55237943-55237962 | Msa0608220:intron | 20.0% |
| !! | AAATAATCTACAACACAATT+GGG | - | chr4_2:55237944-55237963 | Msa0608220:intron | 20.0% |
| !! | ATATAAATAAAATTCACCAC+TGG | - | chr4_2:55238202-55238221 | Msa0608220:intron | 20.0% |
| !! | TTATAGAATTCAAAATCTCA+TGG | + | chr4_2:55238345-55238364 | None:intergenic | 20.0% |
| !! | ATCTGAACACAAAAAAAAAT+AGG | - | chr4_2:55238431-55238450 | Msa0608220:intron | 20.0% |
| !! | TCTGAACACAAAAAAAAATA+GGG | - | chr4_2:55238432-55238451 | Msa0608220:intron | 20.0% |
| !! | CTACTATTTAAATTGTACTT+TGG | - | chr4_2:55238965-55238984 | Msa0608220:intron | 20.0% |
| !!! | GCTTACTTTTCTTAATTTCA+AGG | - | chr4_2:55233876-55233895 | Msa0608220:three_prime_UTR | 25.0% |
| !!! | TACTTGACTTGAAACAATTT+TGG | - | chr4_2:55234174-55234193 | Msa0608220:intron | 25.0% |
| !!! | ACTTGACTTGAAACAATTTT+GGG | - | chr4_2:55234175-55234194 | Msa0608220:intron | 25.0% |
| ! | TTAAACTAACTTAGGTCTTA+CGG | + | chr4_2:55234351-55234370 | None:intergenic | 25.0% |
| !!! | TATCTTTTTGTTTTGCTTAG+TGG | - | chr4_2:55234399-55234418 | Msa0608220:intron | 25.0% |
| !! | GTTAGAAGTTCACATTTTTA+AGG | - | chr4_2:55234421-55234440 | Msa0608220:intron | 25.0% |
| !!! | CATTTTTAAGGTGAATAAGT+AGG | - | chr4_2:55234433-55234452 | Msa0608220:intron | 25.0% |
| ! | ATCAATTAAGTTAAGCTCAT+AGG | - | chr4_2:55234504-55234523 | Msa0608220:intron | 25.0% |
| !! | TTGTATGTGTGAATTTTATG+TGG | - | chr4_2:55234566-55234585 | Msa0608220:intron | 25.0% |
| ! | TCACTTCATAAAAAGAAAAC+CGG | - | chr4_2:55234626-55234645 | Msa0608220:intron | 25.0% |
| ! | TATTAACGTCGAAAAATAAC+AGG | - | chr4_2:55234657-55234676 | Msa0608220:intron | 25.0% |
| ! | ATTAACGTCGAAAAATAACA+GGG | - | chr4_2:55234658-55234677 | Msa0608220:intron | 25.0% |
| ! | GACGAAATCTTTATATTACA+AGG | + | chr4_2:55234982-55235001 | None:intergenic | 25.0% |
| ! | TAAAAATCTGGATCAATAAC+TGG | - | chr4_2:55235710-55235729 | Msa0608220:intron | 25.0% |
| !! | AATAGACGTCTAAAATTCAA+CGG | + | chr4_2:55235758-55235777 | None:intergenic | 25.0% |
| ! | TGAAGAAAGGAAAAAACTAT+CGG | + | chr4_2:55235806-55235825 | None:intergenic | 25.0% |
| ! | TAAGAGAATAAGATGAAGAA+AGG | + | chr4_2:55235819-55235838 | None:intergenic | 25.0% |
| !! | AATACTGACGAAATTTTTCA+GGG | + | chr4_2:55235897-55235916 | None:intergenic | 25.0% |
| ! | TATTCAGGATGTATGTTAAT+GGG | - | chr4_2:55235913-55235932 | Msa0608220:intron | 25.0% |
| !! | CAAAAAAACATGTTTTCCTA+AGG | + | chr4_2:55235945-55235964 | None:intergenic | 25.0% |
| ! | GGGAATTATAATTAGAGAAA+AGG | + | chr4_2:55236145-55236164 | None:intergenic | 25.0% |
| ! | CTAACTAATTCCTTTATGAT+TGG | + | chr4_2:55236276-55236295 | None:intergenic | 25.0% |
| ! | AATTAGTTAGACATCATCAA+AGG | - | chr4_2:55236286-55236305 | Msa0608220:intron | 25.0% |
| ! | CAAAGGAATAAACAACATAA+AGG | - | chr4_2:55236303-55236322 | Msa0608220:intron | 25.0% |
| ! | ACATAAAGGAGAAAATAAAC+CGG | - | chr4_2:55236317-55236336 | Msa0608220:intron | 25.0% |
| ! | AAAAAAATTGTTCAGTCTTC+CGG | + | chr4_2:55236339-55236358 | None:intergenic | 25.0% |
| ! | GAATCTTTATATTACAAGGT+TGG | - | chr4_2:55236640-55236659 | Msa0608220:intron | 25.0% |
| !! | ATGATCCTTCAAATATTTTC+TGG | - | chr4_2:55236690-55236709 | Msa0608220:intron | 25.0% |
| !! | TGATCCTTCAAATATTTTCT+GGG | - | chr4_2:55236691-55236710 | Msa0608220:intron | 25.0% |
| !! | TTTTCCCAGAAAATATTTGA+AGG | + | chr4_2:55236698-55236717 | None:intergenic | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | - | chr4_2:55236714-55236733 | Msa0608220:intron | 25.0% |
| ! | TAATCCAATGATATGATTAC+GGG | + | chr4_2:55237359-55237378 | None:intergenic | 25.0% |
| !!! | TAACACTAGTGTTTTTAATC+CGG | - | chr4_2:55238123-55238142 | Msa0608220:intron | 25.0% |
| ! | CTTAATCATATGTCTAAATC+GGG | + | chr4_2:55238154-55238173 | None:intergenic | 25.0% |
| ! | CCTTAATCATATGTCTAAAT+CGG | + | chr4_2:55238155-55238174 | None:intergenic | 25.0% |
| ! | GTATAGAAGGAATATCTTAA+TGG | - | chr4_2:55238228-55238247 | Msa0608220:intron | 25.0% |
| !! | ATATGGAAGTGTATTATGTA+TGG | + | chr4_2:55238559-55238578 | None:intergenic | 25.0% |
| ! | ATAGAGAAACTAGCATAATA+GGG | + | chr4_2:55238847-55238866 | None:intergenic | 25.0% |
| ! | AATAGAGAAACTAGCATAAT+AGG | + | chr4_2:55238848-55238867 | None:intergenic | 25.0% |
| ! | ATGACTTAAAGTCCATAATT+AGG | + | chr4_2:55238878-55238897 | None:intergenic | 25.0% |
| ! | GTATAAAGTATGGTAATGAG+CGG | - | chr4_2:55234019-55234038 | Msa0608220:three_prime_UTR | 30.0% |
| CGACGTTAATATTCAATATC+CGG | + | chr4_2:55234648-55234667 | None:intergenic | 30.0% | |
| ! | GAGAAGCTAACAATTTTTGT+AGG | + | chr4_2:55234774-55234793 | None:intergenic | 30.0% |
| ! | TCGAAAGAATCTGTTTTACA+GGG | + | chr4_2:55234953-55234972 | None:intergenic | 30.0% |
| ! | ATCGAAAGAATCTGTTTTAC+AGG | + | chr4_2:55234954-55234973 | None:intergenic | 30.0% |
| !!! | TTTTTTTTATAGGGTACACG+TGG | - | chr4_2:55235119-55235138 | Msa0608220:CDS | 30.0% |
| GAAGAAAGGAAAAAACTATC+GGG | + | chr4_2:55235805-55235824 | None:intergenic | 30.0% | |
| AATATTGATGAAGACGATGA+AGG | + | chr4_2:55235845-55235864 | None:intergenic | 30.0% | |
| !!! | TCAGGGTTATGATTTTTTCT+GGG | + | chr4_2:55235880-55235899 | None:intergenic | 30.0% |
| !!! | TTCAGGGTTATGATTTTTTC+TGG | + | chr4_2:55235881-55235900 | None:intergenic | 30.0% |
| ! | GAATACTGACGAAATTTTTC+AGG | + | chr4_2:55235898-55235917 | None:intergenic | 30.0% |
| GAAAAATTTCGTCAGTATTC+AGG | - | chr4_2:55235898-55235917 | Msa0608220:intron | 30.0% | |
| GTATTCAGGATGTATGTTAA+TGG | - | chr4_2:55235912-55235931 | Msa0608220:intron | 30.0% | |
| ATTCAGGATGTATGTTAATG+GGG | - | chr4_2:55235914-55235933 | Msa0608220:intron | 30.0% | |
| CATTTATGACCCAATCATAA+AGG | - | chr4_2:55236263-55236282 | Msa0608220:intron | 30.0% | |
| !!! | ATTTTTTTATAGGGTACACG+TGG | + | chr4_2:55236510-55236529 | None:intergenic | 30.0% |
| GACGGAATCTTTATATTACA+AGG | - | chr4_2:55236636-55236655 | Msa0608220:intron | 30.0% | |
| TGATGAATTCAAGAATGACA+TGG | - | chr4_2:55236744-55236763 | Msa0608220:intron | 30.0% | |
| TAGTCAAAAAAATCTCAGCT+TGG | + | chr4_2:55236857-55236876 | None:intergenic | 30.0% | |
| ! | TAAATTTTCCTTTGCAATCG+TGG | - | chr4_2:55236993-55237012 | Msa0608220:intron | 30.0% |
| TTAACCCGTAATCATATCAT+TGG | - | chr4_2:55237352-55237371 | Msa0608220:intron | 30.0% | |
| ATGCTCAACACAAGAAATAT+TGG | - | chr4_2:55237549-55237568 | Msa0608220:intron | 30.0% | |
| AATTCCAAACAAACTCAAGA+GGG | + | chr4_2:55237691-55237710 | None:intergenic | 30.0% | |
| ! | TCTTTCTCTTGATTAGTTCA+CGG | + | chr4_2:55237715-55237734 | None:intergenic | 30.0% |
| ! | TTTTATTGGGTTTGTGTTTC+AGG | - | chr4_2:55237912-55237931 | Msa0608220:intron | 30.0% |
| AATACAATCCATTTACTGGA+TGG | + | chr4_2:55238029-55238048 | None:intergenic | 30.0% | |
| GTGAAATACAATCCATTTAC+TGG | + | chr4_2:55238033-55238052 | None:intergenic | 30.0% | |
| ! | TAGTGTTATTAAATCCACTC+TGG | + | chr4_2:55238111-55238130 | None:intergenic | 30.0% |
| !! | AACACTAGTGTTTTTAATCC+GGG | - | chr4_2:55238124-55238143 | Msa0608220:intron | 30.0% |
| CCGATTTAGACATATGATTA+AGG | - | chr4_2:55238152-55238171 | Msa0608220:intron | 30.0% | |
| AAATAAAATTCACCACTGGT+AGG | - | chr4_2:55238206-55238225 | Msa0608220:intron | 30.0% | |
| ATACACTTCCATATCTACTT+TGG | - | chr4_2:55238565-55238584 | Msa0608220:intron | 30.0% | |
| TATCCAAACCAAAGTAGATA+TGG | + | chr4_2:55238576-55238595 | None:intergenic | 30.0% | |
| AATCATATTCAAAGCAGCTA+TGG | - | chr4_2:55238775-55238794 | Msa0608220:intron | 30.0% | |
| ACTTAAAGTCCATAATTAGG+TGG | + | chr4_2:55238875-55238894 | None:intergenic | 30.0% | |
| ATTGAAAATGCCAAACATAG+TGG | + | chr4_2:55238906-55238925 | None:intergenic | 30.0% | |
| AGCAATAACTATTGCATCAA+TGG | + | chr4_2:55238947-55238966 | None:intergenic | 30.0% | |
| GATCGTCAGTGTATAAAGTA+TGG | - | chr4_2:55234009-55234028 | Msa0608220:three_prime_UTR | 35.0% | |
| CTCTCGTTCTCATGTAAATT+CGG | + | chr4_2:55234066-55234085 | None:intergenic | 35.0% | |
| GTATGAGACAACATGATTGA+AGG | - | chr4_2:55234105-55234124 | Msa0608220:CDS | 35.0% | |
| ! | AAAACCAACACGAGACTTTT+CGG | + | chr4_2:55234256-55234275 | None:intergenic | 35.0% |
| !!! | AAAAGTCTCGTGTTGGTTTT+TGG | - | chr4_2:55234256-55234275 | Msa0608220:intron | 35.0% |
| TGCATAATATATGTAGGGGT+CGG | + | chr4_2:55234476-55234495 | None:intergenic | 35.0% | |
| ! | ACATACAACTGCGAGATTTT+AGG | + | chr4_2:55234554-55234573 | None:intergenic | 35.0% |
| CATCAAATTATAGTTGCACC+AGG | + | chr4_2:55234684-55234703 | None:intergenic | 35.0% | |
| ! | GTTTTTACCCCCTGTAATAT+AGG | - | chr4_2:55234911-55234930 | Msa0608220:intron | 35.0% |
| ! | GAAAGAATCTGTTTTACAGG+GGG | + | chr4_2:55234951-55234970 | None:intergenic | 35.0% |
| ! | CGAAAGAATCTGTTTTACAG+GGG | + | chr4_2:55234952-55234971 | None:intergenic | 35.0% |
| TCTTTACCACCCTGTAATTT+AGG | - | chr4_2:55235161-55235180 | Msa0608220:CDS | 35.0% | |
| ! | AATTTTTACAGGGGGAAAAC+TGG | + | chr4_2:55236437-55236456 | None:intergenic | 35.0% |
| TTCAGGATGTATGTTAATGG+GGG | - | chr4_2:55235915-55235934 | Msa0608220:intron | 35.0% | |
| !! | AGAAAAGGGCTTTGAGTTAA+GGG | + | chr4_2:55236130-55236149 | None:intergenic | 35.0% |
| ! | AATTTTTACAGGGGGAAAAC+TGG | - | chr4_2:55236437-55236456 | Msa0608220:intron | 35.0% |
| ! | TTCCATCACGATTTTTGTCA+CGG | + | chr4_2:55237263-55237282 | None:intergenic | 35.0% |
| ACTATAAACGATGTGGTTTG+TGG | - | chr4_2:55237447-55237466 | Msa0608220:intron | 35.0% | |
| GAATGGTCTTCTATGGTATT+AGG | - | chr4_2:55237469-55237488 | Msa0608220:intron | 35.0% | |
| CTATGGTATTAGGCTTTACA+TGG | - | chr4_2:55237479-55237498 | Msa0608220:intron | 35.0% | |
| CTCAACACAAGAAATATTGG+AGG | - | chr4_2:55237552-55237571 | Msa0608220:intron | 35.0% | |
| TTTGCATTTCCTTCACTGAT+TGG | + | chr4_2:55237581-55237600 | None:intergenic | 35.0% | |
| !! | GATTGGCTTACTTTAGGTAT+TGG | + | chr4_2:55237656-55237675 | None:intergenic | 35.0% |
| ATACCTAAAGTAAGCCAATC+AGG | - | chr4_2:55237656-55237675 | Msa0608220:intron | 35.0% | |
| !! | ATACCTGATTGGCTTACTTT+AGG | + | chr4_2:55237662-55237681 | None:intergenic | 35.0% |
| GAATTCCAAACAAACTCAAG+AGG | + | chr4_2:55237692-55237711 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTGATTAGTTCAC+GGG | + | chr4_2:55237714-55237733 | None:intergenic | 35.0% |
| ! | TTATCTTGTAGCTTTGCTCA+TGG | - | chr4_2:55237751-55237770 | Msa0608220:intron | 35.0% |
| GATTTGGAGATGAGATTAAG+AGG | - | chr4_2:55237773-55237792 | Msa0608220:intron | 35.0% | |
| ACAAAATACATGCATACCTC+AGG | + | chr4_2:55238069-55238088 | None:intergenic | 35.0% | |
| CATATTTGAATTGACCAGAG+TGG | - | chr4_2:55238094-55238113 | Msa0608220:intron | 35.0% | |
| !! | ACACTAGTGTTTTTAATCCG+GGG | - | chr4_2:55238125-55238144 | Msa0608220:intron | 35.0% |
| AAAAAATAGGGTGTGAGAGA+AGG | + | chr4_2:55238302-55238321 | None:intergenic | 35.0% | |
| ! | ATTTTTCCACCCTAAAACAG+GGG | + | chr4_2:55238384-55238403 | None:intergenic | 35.0% |
| ! | CATTTTTCCACCCTAAAACA+GGG | + | chr4_2:55238385-55238404 | None:intergenic | 35.0% |
| !! | TCATTTTTCCACCCTAAAAC+AGG | + | chr4_2:55238386-55238405 | None:intergenic | 35.0% |
| GAAGTGTATTATGTATGGTG+TGG | + | chr4_2:55238554-55238573 | None:intergenic | 35.0% | |
| CTTCCATATCTACTTTGGTT+TGG | - | chr4_2:55238570-55238589 | Msa0608220:intron | 35.0% | |
| CTTTAATTACCTCTTGTGTG+TGG | - | chr4_2:55238633-55238652 | Msa0608220:intron | 35.0% | |
| AATCGCCATGAAAACCAAAA+AGG | - | chr4_2:55238703-55238722 | Msa0608220:intron | 35.0% | |
| ATCGCCATGAAAACCAAAAA+GGG | - | chr4_2:55238704-55238723 | Msa0608220:intron | 35.0% | |
| ! | TTCATCTATGAACCCCTTTT+TGG | + | chr4_2:55238720-55238739 | None:intergenic | 35.0% |
| AAACTAGCATAATAGGGTGA+TGG | + | chr4_2:55238841-55238860 | None:intergenic | 35.0% | |
| CTATTACCACCACCTAATTA+TGG | - | chr4_2:55238863-55238882 | Msa0608220:intron | 35.0% | |
| TAAAGTCCATAATTAGGTGG+TGG | + | chr4_2:55238872-55238891 | None:intergenic | 35.0% | |
| TTCAAGGATTCTTTGCTAGC+AGG | - | chr4_2:55233892-55233911 | Msa0608220:three_prime_UTR | 40.0% | |
| TCAAGGATTCTTTGCTAGCA+GGG | - | chr4_2:55233893-55233912 | Msa0608220:three_prime_UTR | 40.0% | |
| CATGTTGTCTCATACCTACA+TGG | + | chr4_2:55234100-55234119 | None:intergenic | 40.0% | |
| GGGATGTATGACTTTCTGAT+AGG | - | chr4_2:55234195-55234214 | Msa0608220:intron | 40.0% | |
| ! | TCATCACTCGCATGTTTTTC+AGG | + | chr4_2:55234224-55234243 | None:intergenic | 40.0% |
| AAAACCCCCTGGTCAAATAT+TGG | - | chr4_2:55235003-55235022 | Msa0608220:intron | 40.0% | |
| TGGAACTCGCCTAAATTACA+GGG | + | chr4_2:55236457-55236476 | None:intergenic | 40.0% | |
| TCAGGATGTATGTTAATGGG+GGG | - | chr4_2:55235916-55235935 | Msa0608220:intron | 40.0% | |
| !! | GAGAAAAGGGCTTTGAGTTA+AGG | + | chr4_2:55236131-55236150 | None:intergenic | 40.0% |
| TGGAACTCGCCTAAATTACA+GGG | - | chr4_2:55236457-55236476 | Msa0608220:intron | 40.0% | |
| GTCTTTACCCCCTGTAATTT+AGG | + | chr4_2:55236469-55236488 | None:intergenic | 40.0% | |
| CAAAAAAATCTCAGCTTGGC+CGG | + | chr4_2:55236853-55236872 | None:intergenic | 40.0% | |
| TGTACTAACCACGATTGCAA+AGG | + | chr4_2:55237004-55237023 | None:intergenic | 40.0% | |
| AACCGTGACAAAAATCGTGA+TGG | - | chr4_2:55237258-55237277 | Msa0608220:intron | 40.0% | |
| GTTGCAGACTATAAACGATG+TGG | - | chr4_2:55237440-55237459 | Msa0608220:intron | 40.0% | |
| ! | AAACGATGTGGTTTGTGGAA+TGG | - | chr4_2:55237452-55237471 | Msa0608220:intron | 40.0% |
| GTTTGTGGAATGGTCTTCTA+TGG | - | chr4_2:55237462-55237481 | Msa0608220:intron | 40.0% | |
| ATGCAAAAACCAGAGTGCAA+AGG | - | chr4_2:55237594-55237613 | Msa0608220:intron | 40.0% | |
| ! | TGTAGCTTTGCTCATGGATT+TGG | - | chr4_2:55237757-55237776 | Msa0608220:intron | 40.0% |
| ATTAATGTGTGACACACCTC+AGG | + | chr4_2:55237800-55237819 | None:intergenic | 40.0% | |
| GTTCTTATGTCTAACCTCGT+AGG | - | chr4_2:55237976-55237995 | Msa0608220:intron | 40.0% | |
| ACCGCTAGAAAAAATGGCTT+TGG | - | chr4_2:55237999-55238018 | Msa0608220:intron | 40.0% | |
| !!! | GCCAAAGCCATTTTTTCTAG+CGG | + | chr4_2:55238003-55238022 | None:intergenic | 40.0% |
| TTGGCAAACCATCCAGTAAA+TGG | - | chr4_2:55238018-55238037 | Msa0608220:intron | 40.0% | |
| ATTCCTTCTATACCTACCAG+TGG | + | chr4_2:55238221-55238240 | None:intergenic | 40.0% | |
| ! | ATGAGTTTTCCCCCTGTTTT+AGG | - | chr4_2:55238371-55238390 | Msa0608220:intron | 40.0% |
| ! | TGAGTTTTCCCCCTGTTTTA+GGG | - | chr4_2:55238372-55238391 | Msa0608220:intron | 40.0% |
| ! | TTTTTCCACCCTAAAACAGG+GGG | + | chr4_2:55238383-55238402 | None:intergenic | 40.0% |
| TCGCCATGAAAACCAAAAAG+GGG | - | chr4_2:55238705-55238724 | Msa0608220:intron | 40.0% | |
| !!! | GAACCCCTTTTTGGTTTTCA+TGG | + | chr4_2:55238711-55238730 | None:intergenic | 40.0% |
| ! | TAGCAGGGATGGAGTATTTG+AGG | - | chr4_2:55233908-55233927 | Msa0608220:three_prime_UTR | 45.0% |
| TGAGAACGAGAGAGTTCATG+AGG | - | chr4_2:55234074-55234093 | Msa0608220:CDS | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | + | chr4_2:55234921-55234940 | None:intergenic | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | + | chr4_2:55234922-55234941 | None:intergenic | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | + | chr4_2:55234923-55234942 | None:intergenic | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | - | chr4_2:55234921-55234940 | Msa0608220:intron | 45.0% | |
| ! | CTGTTTTACAGGGGGAAAAC+CGG | + | chr4_2:55234943-55234962 | None:intergenic | 45.0% |
| AACTCGCCTAAATTACAGGG+TGG | + | chr4_2:55236460-55236479 | None:intergenic | 45.0% | |
| CTGGAACTCGCCTAAATTAC+AGG | + | chr4_2:55236456-55236475 | None:intergenic | 45.0% | |
| CTGGAACTCGCCTAAATTAC+AGG | - | chr4_2:55236456-55236475 | Msa0608220:intron | 45.0% | |
| GGAACTCGCCTAAATTACAG+GGG | - | chr4_2:55236458-55236477 | Msa0608220:intron | 45.0% | |
| GAACTCGCCTAAATTACAGG+GGG | - | chr4_2:55236459-55236478 | Msa0608220:intron | 45.0% | |
| AAAACCCCCTGGTCGAATAT+TGG | + | chr4_2:55236615-55236634 | None:intergenic | 45.0% | |
| AAGAGCAAATTCCACAGCAG+TGG | - | chr4_2:55237524-55237543 | Msa0608220:intron | 45.0% | |
| TGGAGGTTACCAATCAGTGA+AGG | - | chr4_2:55237569-55237588 | Msa0608220:intron | 45.0% | |
| AACCAGAGTGCAAAGGTCTT+TGG | - | chr4_2:55237601-55237620 | Msa0608220:intron | 45.0% | |
| ACCAGAGTGCAAAGGTCTTT+GGG | - | chr4_2:55237602-55237621 | Msa0608220:intron | 45.0% | |
| CCAAACAAACTCAAGAGGGT+TGG | + | chr4_2:55237687-55237706 | None:intergenic | 45.0% | |
| ! | CCAACCCTCTTGAGTTTGTT+TGG | - | chr4_2:55237684-55237703 | Msa0608220:intron | 45.0% |
| GATGAGATTAAGAGGACCTG+AGG | - | chr4_2:55237781-55237800 | Msa0608220:intron | 45.0% | |
| !!! | TTTTTTCTAGCGGTCCTACG+AGG | + | chr4_2:55237993-55238012 | None:intergenic | 45.0% |
| CGTAGGACCGCTAGAAAAAA+TGG | - | chr4_2:55237993-55238012 | Msa0608220:intron | 45.0% | |
| GGATTGTATTTCACAGCGAC+AGG | - | chr4_2:55238039-55238058 | Msa0608220:intron | 45.0% | |
| TTGTATTTCACAGCGACAGG+TGG | - | chr4_2:55238042-55238061 | Msa0608220:intron | 45.0% | |
| TCACCACTGGTAGGTATAGA+AGG | - | chr4_2:55238215-55238234 | Msa0608220:intron | 45.0% | |
| GTGTGAGAGAAGGTCATAAG+GGG | + | chr4_2:55238292-55238311 | None:intergenic | 45.0% | |
| GGTGTGAGAGAAGGTCATAA+GGG | + | chr4_2:55238293-55238312 | None:intergenic | 45.0% | |
| ! | GCATAATAGGGTGATGGCAA+TGG | + | chr4_2:55238835-55238854 | None:intergenic | 45.0% |
| GTCATGCAAGCCACTATGTT+TGG | - | chr4_2:55238893-55238912 | Msa0608220:intron | 45.0% | |
| !!! | TTATTTTTAAAATTTTTACA+GGG | + | chr4_2:55236427-55236446 | None:intergenic | 5.0% |
| !!! | TTTATTTTTAAAATTTTTAC+AGG | + | chr4_2:55236426-55236445 | None:intergenic | 5.0% |
| !! | TAAAAATAAAAAATAAAATC+TGG | - | chr4_2:55235214-55235233 | Msa0608220:CDS | 5.0% |
| !! | ATTTAAAAAAATTAAAAATC+TGG | - | chr4_2:55235320-55235339 | Msa0608220:CDS | 5.0% |
| !!! | TATTTAAAATTTTAAAAATC+TGG | - | chr4_2:55235698-55235717 | Msa0608220:intron | 5.0% |
| !! | TAAAAATAAAAAATAAAATC+TGG | + | chr4_2:55235214-55235233 | None:intergenic | 5.0% |
| !!! | TTTATTTTTAAAATTTTTAC+AGG | - | chr4_2:55236426-55236445 | Msa0608220:intron | 5.0% |
| !!! | TTATTTTTAAAATTTTTACA+GGG | - | chr4_2:55236427-55236446 | Msa0608220:intron | 5.0% |
| !! | TAAAGAAAAATAAAAAAATA+GGG | + | chr4_2:55238314-55238333 | None:intergenic | 5.0% |
| !! | TTAAAGAAAAATAAAAAAAT+AGG | + | chr4_2:55238315-55238334 | None:intergenic | 5.0% |
| GGATTCTTTGCTAGCAGGGA+TGG | - | chr4_2:55233897-55233916 | Msa0608220:three_prime_UTR | 50.0% | |
| TTGTAACGCCGATGCTCCTT+TGG | - | chr4_2:55233975-55233994 | Msa0608220:three_prime_UTR | 50.0% | |
| TGTAACGCCGATGCTCCTTT+GGG | - | chr4_2:55233976-55233995 | Msa0608220:three_prime_UTR | 50.0% | |
| GGCTTCTGACAGCTTCTCAA+CGG | - | chr4_2:55234040-55234059 | Msa0608220:exon | 50.0% | |
| GAGAGTTCATGAGGCCATGT+AGG | - | chr4_2:55234083-55234102 | Msa0608220:CDS | 50.0% | |
| CACACCGAAAAGTCTCGTGT+TGG | - | chr4_2:55234249-55234268 | Msa0608220:intron | 50.0% | |
| CGTCGAAAAATAACAGGGCC+TGG | - | chr4_2:55234663-55234682 | Msa0608220:intron | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | + | chr4_2:55234924-55234943 | None:intergenic | 50.0% | |
| AGATTTCGTCGAAAACCCCC+TGG | - | chr4_2:55234992-55235011 | Msa0608220:intron | 50.0% | |
| GGGTCCAATATTTGACCAGG+GGG | + | chr4_2:55235010-55235029 | None:intergenic | 50.0% | |
| GGGGTCCAATATTTGACCAG+GGG | + | chr4_2:55235011-55235030 | None:intergenic | 50.0% | |
| GGGGGTCCAATATTTGACCA+GGG | + | chr4_2:55235012-55235031 | None:intergenic | 50.0% | |
| TGGGGGTCCAATATTTGACC+AGG | + | chr4_2:55235013-55235032 | None:intergenic | 50.0% | |
| GTCAGCAGAAAAGGGTGACT+CGG | + | chr4_2:55236565-55236584 | None:intergenic | 50.0% | |
| TGTTAATGGGGGGTTGCCTT+AGG | - | chr4_2:55235926-55235945 | Msa0608220:intron | 50.0% | |
| TCAGCTTGGCCGGAAATCAT+GGG | + | chr4_2:55236843-55236862 | None:intergenic | 50.0% | |
| GTTGAGCATTACCACTGCTG+TGG | + | chr4_2:55237538-55237557 | None:intergenic | 50.0% | |
| CCAGAGTGCAAAGGTCTTTG+GGG | - | chr4_2:55237603-55237622 | Msa0608220:intron | 50.0% | |
| CAGAGTGCAAAGGTCTTTGG+GGG | - | chr4_2:55237604-55237623 | Msa0608220:intron | 50.0% | |
| GAGGGTTGGAGATACCTGAT+TGG | + | chr4_2:55237673-55237692 | None:intergenic | 50.0% | |
| ATGTCTAAATCGGGCAACCC+CGG | + | chr4_2:55238145-55238164 | None:intergenic | 50.0% | |
| GGGTGTGAGAGAAGGTCATA+AGG | + | chr4_2:55238294-55238313 | None:intergenic | 50.0% | |
| !!! | GTTTTCCCCCTGTTTTAGGG+TGG | - | chr4_2:55238375-55238394 | Msa0608220:intron | 50.0% |
| TACCTCTTGTGTGTGGTTGC+AGG | - | chr4_2:55238640-55238659 | Msa0608220:intron | 50.0% | |
| ATCCTGCAACCACACACAAG+AGG | + | chr4_2:55238645-55238664 | None:intergenic | 50.0% | |
| GTAACGCCGATGCTCCTTTG+GGG | - | chr4_2:55233977-55233996 | Msa0608220:three_prime_UTR | 55.0% | |
| TAACGCCGATGCTCCTTTGG+GGG | - | chr4_2:55233978-55233997 | Msa0608220:three_prime_UTR | 55.0% | |
| TCACACCACGTCATCAGCTG+GGG | + | chr4_2:55235031-55235050 | None:intergenic | 55.0% | |
| GTCACACCACGTCATCAGCT+GGG | + | chr4_2:55235032-55235051 | None:intergenic | 55.0% | |
| ! | GTCACCCTTTTCTGCTGACG+TGG | - | chr4_2:55235064-55235083 | Msa0608220:CDS | 55.0% |
| CACGCCACGTCAGCAGAAAA+GGG | + | chr4_2:55236557-55236576 | None:intergenic | 55.0% | |
| CACGCCACGTCAGCAGAAAA+GGG | - | chr4_2:55236557-55236576 | Msa0608220:intron | 55.0% | |
| ! | GTCACCCTTTTCTGCTGACG+TGG | + | chr4_2:55235064-55235083 | None:intergenic | 55.0% |
| TGGGGGTCCAATATTCGACC+AGG | - | chr4_2:55236605-55236624 | Msa0608220:intron | 55.0% | |
| GGGGGTCCAATATTCGACCA+GGG | - | chr4_2:55236606-55236625 | Msa0608220:intron | 55.0% | |
| GGGGTCCAATATTCGACCAG+GGG | - | chr4_2:55236607-55236626 | Msa0608220:intron | 55.0% | |
| GGGTCCAATATTCGACCAGG+GGG | - | chr4_2:55236608-55236627 | Msa0608220:intron | 55.0% | |
| ! | TTCGACCAGGGGGTTTTCGA+CGG | - | chr4_2:55236618-55236637 | Msa0608220:intron | 55.0% |
| AGATTCCGTCGAAAACCCCC+TGG | + | chr4_2:55236626-55236645 | None:intergenic | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | - | chr4_2:55236831-55236850 | Msa0608220:intron | 55.0% | |
| CAGCTTGGCCGGAAATCATG+GGG | + | chr4_2:55236842-55236861 | None:intergenic | 55.0% | |
| CTCAGCTTGGCCGGAAATCA+TGG | + | chr4_2:55236844-55236863 | None:intergenic | 55.0% | |
| CCCCAAAGACCTTTGCACTC+TGG | + | chr4_2:55237606-55237625 | None:intergenic | 55.0% | |
| CACACCACGTCATCAGCTGG+GGG | + | chr4_2:55235030-55235049 | None:intergenic | 60.0% | |
| CGTCACACCACGTCATCAGC+TGG | + | chr4_2:55235033-55235052 | None:intergenic | 60.0% | |
| ! | GCTGATGACGTGGTGTGACG+TGG | - | chr4_2:55235033-55235052 | Msa0608220:intron | 60.0% |
| GCACGCCACGTCAGCAGAAA+AGG | + | chr4_2:55236556-55236575 | None:intergenic | 60.0% | |
| GCACGCCACGTCAGCAGAAA+AGG | - | chr4_2:55236556-55236575 | Msa0608220:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr4_2:55236835-55236854 | None:intergenic | 60.0% | |
| CTTGGCCGGAAATCATGGGG+TGG | + | chr4_2:55236839-55236858 | None:intergenic | 60.0% | |
| ! | CTCCGCCCCCAAAGGAGCAT+CGG | + | chr4_2:55233986-55234005 | None:intergenic | 65.0% |
| CGATCACTCTCCGCCCCCAA+AGG | + | chr4_2:55233994-55234013 | None:intergenic | 65.0% | |
| ! | TGGACCCCCAGCTGATGACG+TGG | - | chr4_2:55235023-55235042 | Msa0608220:intron | 65.0% |
| AGCGCGCCACGTCATCAGCT+GGG | - | chr4_2:55236586-55236605 | Msa0608220:intron | 65.0% | |
| ! | TGGACCCCCAGCTGATGACG+TGG | + | chr4_2:55235023-55235042 | None:intergenic | 65.0% |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr4_2:55236836-55236855 | None:intergenic | 65.0% | |
| CACAGCGACAGGTGGACCTG+AGG | - | chr4_2:55238050-55238069 | Msa0608220:intron | 65.0% | |
| ! | CGCCGATGCTCCTTTGGGGG+CGG | - | chr4_2:55233981-55234000 | Msa0608220:three_prime_UTR | 70.0% |
| CAGCGCGCCACGTCATCAGC+TGG | - | chr4_2:55236585-55236604 | Msa0608220:intron | 70.0% | |
| GCGCGCCACGTCATCAGCTG+GGG | - | chr4_2:55236587-55236606 | Msa0608220:intron | 70.0% | |
| CGCGCCACGTCATCAGCTGG+GGG | - | chr4_2:55236588-55236607 | Msa0608220:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55233866 | 55238988 | 55233866 | ID=Msa0608220;Name=Msa0608220 |
| chr4_2 | mRNA | 55233866 | 55238988 | 55233866 | ID=Msa0608220-mRNA-1;Parent=Msa0608220;Name=Msa0608220-mRNA-1;_AED=0.02;_eAED=0.04;_QI=0|0.5|0.4|0.8|0.75|0.6|5|186|211 |
| chr4_2 | exon | 55233866 | 55234192 | 55233866 | ID=Msa0608220-mRNA-1:exon:14019;Parent=Msa0608220-mRNA-1 |
| chr4_2 | exon | 55234783 | 55234920 | 55234783 | ID=Msa0608220-mRNA-1:exon:14018;Parent=Msa0608220-mRNA-1 |
| chr4_2 | exon | 55235052 | 55235184 | 55235052 | ID=Msa0608220-mRNA-1:exon:14017;Parent=Msa0608220-mRNA-1 |
| chr4_2 | exon | 55235190 | 55235407 | 55235190 | ID=Msa0608220-mRNA-1:exon:14016;Parent=Msa0608220-mRNA-1 |
| chr4_2 | exon | 55238983 | 55238988 | 55238983 | ID=Msa0608220-mRNA-1:exon:14015;Parent=Msa0608220-mRNA-1 |
| chr4_2 | CDS | 55238983 | 55238988 | 55238983 | ID=Msa0608220-mRNA-1:cds;Parent=Msa0608220-mRNA-1 |
| chr4_2 | CDS | 55235190 | 55235407 | 55235190 | ID=Msa0608220-mRNA-1:cds;Parent=Msa0608220-mRNA-1 |
| chr4_2 | CDS | 55235052 | 55235184 | 55235052 | ID=Msa0608220-mRNA-1:cds;Parent=Msa0608220-mRNA-1 |
| chr4_2 | CDS | 55234783 | 55234920 | 55234783 | ID=Msa0608220-mRNA-1:cds;Parent=Msa0608220-mRNA-1 |
| chr4_2 | CDS | 55234052 | 55234192 | 55234052 | ID=Msa0608220-mRNA-1:cds;Parent=Msa0608220-mRNA-1 |
| chr4_2 | three_prime_UTR | 55233866 | 55234051 | 55233866 | ID=Msa0608220-mRNA-1:three_prime_utr;Parent=Msa0608220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
