Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554130 | KEH30682.1 | 94.861 | 467 | 23 | 1 | 1 | 466 | 1 | 467 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554130 | sp|Q9M3B3|WSD4_ARATH | 27.391 | 460 | 293 | 10 | 6 | 437 | 14 | 460 | 2.10e-53 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554130 | A0A072ULU8 | 94.861 | 467 | 23 | 1 | 1 | 466 | 1 | 467 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0554130 | 0.806873 | 6.658413e-50 | -8.615850e-47 |
| Msa0280750 | Msa0554130 | 0.806225 | 9.119788e-50 | -8.615850e-47 |
| Msa0288200 | Msa0554130 | 0.800678 | 1.287656e-48 | -8.615850e-47 |
| Msa0322840 | Msa0554130 | 0.814932 | 1.197405e-51 | -8.615850e-47 |
| Msa0554130 | Msa0608220 | 0.855741 | 5.147307e-62 | -8.615850e-47 |
| Msa0554130 | Msa0648540 | 0.882490 | 9.972726e-71 | -8.615850e-47 |
| Msa0554130 | Msa0691070 | 0.884544 | 1.751526e-71 | -8.615850e-47 |
| Msa0554130 | Msa0815320 | 0.810038 | 1.405619e-50 | -8.615850e-47 |
| Msa0554130 | Msa1288000 | 0.806664 | 7.371640e-50 | -8.615850e-47 |
| Msa0554130 | Msa1429420 | 0.802165 | 6.384948e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554130 | MtrunA17_Chr4g0040001 | 91.863 | 467 | 37 | 1 | 1 | 466 | 1 | 467 | 0.0 | 850 |
| Msa0554130 | MtrunA17_Chr4g0040231 | 83.084 | 467 | 78 | 1 | 1 | 466 | 1 | 467 | 0.0 | 777 |
| Msa0554130 | MtrunA17_Chr4g0040011 | 90.465 | 430 | 40 | 1 | 1 | 429 | 9 | 438 | 0.0 | 768 |
| Msa0554130 | MtrunA17_Chr4g0040221 | 80.687 | 466 | 86 | 2 | 1 | 466 | 1 | 462 | 0.0 | 757 |
| Msa0554130 | MtrunA17_Chr4g0040261 | 63.305 | 466 | 167 | 2 | 1 | 466 | 34 | 495 | 0.0 | 611 |
| Msa0554130 | MtrunA17_Chr4g0040251 | 60.991 | 464 | 177 | 2 | 1 | 464 | 1 | 460 | 0.0 | 597 |
| Msa0554130 | MtrunA17_Chr4g0040271 | 62.857 | 420 | 151 | 3 | 1 | 420 | 1 | 415 | 0.0 | 557 |
| Msa0554130 | MtrunA17_Chr7g0217051 | 56.156 | 463 | 197 | 4 | 6 | 466 | 7 | 465 | 0.0 | 551 |
| Msa0554130 | MtrunA17_Chr7g0248011 | 47.059 | 459 | 239 | 3 | 2 | 460 | 3 | 457 | 1.42e-151 | 440 |
| Msa0554130 | MtrunA17_Chr6g0457271 | 52.793 | 358 | 161 | 4 | 67 | 420 | 5 | 358 | 1.05e-137 | 400 |
| Msa0554130 | MtrunA17_Chr6g0457281 | 51.042 | 288 | 132 | 4 | 94 | 374 | 4 | 289 | 3.36e-104 | 312 |
| Msa0554130 | MtrunA17_Chr1g0147071 | 27.974 | 454 | 283 | 12 | 10 | 437 | 10 | 445 | 2.02e-49 | 176 |
| Msa0554130 | MtrunA17_Chr5g0393471 | 29.352 | 293 | 195 | 7 | 170 | 456 | 43 | 329 | 2.50e-28 | 114 |
| Msa0554130 | MtrunA17_Chr6g0457291 | 55.224 | 67 | 30 | 0 | 398 | 464 | 1 | 67 | 1.80e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554130 | AT3G49190.1 | 27.391 | 460 | 293 | 10 | 6 | 437 | 14 | 460 | 2.14e-54 | 190 |
| Msa0554130 | AT5G53390.1 | 27.368 | 475 | 318 | 9 | 9 | 466 | 14 | 478 | 9.97e-53 | 185 |
| Msa0554130 | AT3G49210.1 | 26.923 | 494 | 316 | 10 | 10 | 466 | 26 | 511 | 8.75e-49 | 175 |
| Msa0554130 | AT3G49200.1 | 26.566 | 463 | 307 | 11 | 10 | 446 | 26 | 481 | 1.25e-47 | 171 |
| Msa0554130 | AT5G16350.3 | 27.991 | 443 | 289 | 13 | 7 | 437 | 4 | 428 | 1.39e-47 | 171 |
| Msa0554130 | AT5G12420.1 | 26.432 | 454 | 296 | 11 | 9 | 437 | 6 | 446 | 7.83e-46 | 166 |
| Msa0554130 | AT2G38995.2 | 27.389 | 471 | 316 | 11 | 10 | 466 | 21 | 479 | 1.01e-44 | 163 |
| Msa0554130 | AT5G16350.1 | 27.233 | 459 | 292 | 13 | 7 | 437 | 4 | 448 | 1.50e-44 | 163 |
| Msa0554130 | AT5G12420.2 | 26.761 | 426 | 274 | 11 | 9 | 409 | 6 | 418 | 1.32e-43 | 160 |
| Msa0554130 | AT1G72110.1 | 25.850 | 441 | 305 | 7 | 1 | 429 | 3 | 433 | 1.53e-43 | 160 |
| Msa0554130 | AT5G22490.1 | 26.338 | 467 | 295 | 15 | 11 | 449 | 12 | 457 | 2.81e-42 | 156 |
| Msa0554130 | AT5G37300.1 | 27.273 | 385 | 260 | 6 | 56 | 429 | 60 | 435 | 1.64e-41 | 154 |
| Msa0554130 | AT5G37300.4 | 27.273 | 385 | 260 | 6 | 56 | 429 | 78 | 453 | 2.17e-41 | 154 |
| Msa0554130 | AT5G53380.1 | 25.376 | 465 | 304 | 12 | 6 | 444 | 4 | 451 | 7.21e-40 | 150 |
| Msa0554130 | AT2G38995.3 | 27.229 | 415 | 277 | 10 | 66 | 466 | 7 | 410 | 4.21e-39 | 146 |
| Msa0554130 | AT1G72110.2 | 24.943 | 441 | 300 | 8 | 1 | 429 | 3 | 424 | 9.06e-39 | 147 |
| Msa0554130 | AT2G38995.4 | 27.248 | 367 | 245 | 8 | 66 | 420 | 7 | 363 | 1.97e-36 | 139 |
| Msa0554130 | AT5G16350.2 | 27.387 | 398 | 247 | 13 | 6 | 375 | 3 | 386 | 7.77e-36 | 137 |
| Msa0554130 | AT3G49210.2 | 26.943 | 386 | 238 | 9 | 10 | 359 | 26 | 403 | 3.63e-35 | 136 |
| Msa0554130 | AT5G22490.2 | 26.154 | 390 | 239 | 15 | 11 | 372 | 12 | 380 | 1.42e-31 | 125 |
| Msa0554130 | AT5G37300.2 | 26.524 | 328 | 221 | 6 | 56 | 372 | 78 | 396 | 6.98e-31 | 123 |
| Msa0554130 | AT5G37300.3 | 30.631 | 222 | 145 | 4 | 56 | 274 | 78 | 293 | 1.26e-25 | 107 |
| Msa0554130 | AT2G38995.1 | 24.215 | 223 | 154 | 4 | 255 | 466 | 71 | 289 | 1.75e-13 | 71.2 |
Find 103 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATATCCTGACCTTAT+AGG | 0.131112 | 4_1:+51386683 | None:intergenic |
| TTTGGCTCCATATCAGATTT+TGG | 0.194143 | 4_1:-51386749 | Msa0554130:CDS |
| AATAGAGAAACTAGCATAAT+AGG | 0.205337 | 4_1:+51383551 | None:intergenic |
| TTGGCAAACCATCCAGTAAA+TGG | 0.227217 | 4_1:-51384381 | Msa0554130:CDS |
| CTATTACCACCACCTAATTA+TGG | 0.235827 | 4_1:-51383533 | Msa0554130:three_prime_UTR |
| TTCATATGTCTTTGCCTTCC+TGG | 0.237275 | 4_1:-51387445 | Msa0554130:CDS |
| CCAACCCTCTTGAGTTTGTT+TGG | 0.247573 | 4_1:-51384713 | Msa0554130:CDS |
| TGTAGCTTTGCTCATGGATT+TGG | 0.268046 | 4_1:-51384640 | Msa0554130:CDS |
| GAGGAGAAGCGTGGATTGAT+AGG | 0.274786 | 4_1:+51387363 | None:intergenic |
| AACCAGAGTGCAAAGGTCTT+TGG | 0.282055 | 4_1:-51384794 | Msa0554130:CDS |
| GGAATCTTTAAGTGCTCTTC+AGG | 0.284350 | 4_1:+51387112 | None:intergenic |
| ACCAGAGTGCAAAGGTCTTT+GGG | 0.288027 | 4_1:-51384793 | Msa0554130:CDS |
| ATTCTTGATTGGCTTACTTT+AGG | 0.288158 | 4_1:+51384738 | None:intergenic |
| TCCACGCTTCTCCTCTATTA+TGG | 0.310743 | 4_1:-51387355 | Msa0554130:intron |
| TGACTTAAAAGTCCATAATT+AGG | 0.311311 | 4_1:+51383521 | None:intergenic |
| GCTTGATCCAAAATCTGATA+TGG | 0.323604 | 4_1:+51386742 | None:intergenic |
| AATCGCCATGAAAACCAAAA+AGG | 0.323627 | 4_1:-51383693 | Msa0554130:CDS |
| GTGAAATACAATCCATTTAC+TGG | 0.329273 | 4_1:+51384369 | None:intergenic |
| AAAATAATCTACAACACAAT+TGG | 0.333891 | 4_1:-51384456 | Msa0554130:CDS |
| GTTTGTGGAATGGTCTTCTA+TGG | 0.338920 | 4_1:-51384933 | Msa0554130:CDS |
| GATTGGCTTACTTTAGGTAT+TGG | 0.353212 | 4_1:+51384744 | None:intergenic |
| GAATGGTCTTCTATGGTATT+AGG | 0.354558 | 4_1:-51384926 | Msa0554130:CDS |
| ATGCTCAACACAAGAAATAT+TGG | 0.356933 | 4_1:-51384846 | Msa0554130:CDS |
| TTTGCATTTCCTTCACTGAT+TGG | 0.357490 | 4_1:+51384817 | None:intergenic |
| ATGATGAAGTTTGAATATTA+TGG | 0.365294 | 4_1:+51386934 | None:intergenic |
| GTCATGCAAGCCACTATGTT+TGG | 0.367375 | 4_1:-51383502 | Msa0554130:three_prime_UTR |
| AGCAATAACTATTGCATCAA+TGG | 0.392723 | 4_1:+51383451 | None:intergenic |
| GATATGGTTGACAAGGTAAC+AGG | 0.404187 | 4_1:+51386647 | None:intergenic |
| TTTATGGTTTCAGGAAATAT+GGG | 0.407052 | 4_1:+51387091 | None:intergenic |
| ACCACAAGACAAACCACTTT+GGG | 0.414710 | 4_1:-51386999 | Msa0554130:CDS |
| ACAAAGAGGGTAGGATGAAA+TGG | 0.425088 | 4_1:-51387153 | Msa0554130:CDS |
| GTGCAAGCTGCATTGGTTGT+TGG | 0.426879 | 4_1:+51386956 | None:intergenic |
| TTGATCAAGTGATAGTGATA+TGG | 0.427100 | 4_1:+51386631 | None:intergenic |
| GCATACACACCACAACATAA+TGG | 0.428251 | 4_1:-51387538 | Msa0554130:exon |
| CAAATGGAATAGCTAATTCC+AGG | 0.437081 | 4_1:+51387427 | None:intergenic |
| CTGGCTCTTGAACTTCTTCA+AGG | 0.437423 | 4_1:+51387508 | None:intergenic |
| CTTTCTCTTGATTAGTTCAC+GGG | 0.438535 | 4_1:+51384686 | None:intergenic |
| TGGTGATGGTTACTCTCTCA+TGG | 0.439804 | 4_1:-51386906 | Msa0554130:CDS |
| TGCAAGCTGCATTGGTTGTT+GGG | 0.441209 | 4_1:+51386957 | None:intergenic |
| ATAGAGAAACTAGCATAATA+GGG | 0.441271 | 4_1:+51383552 | None:intergenic |
| AAGATGACAAAACACCTATA+AGG | 0.442261 | 4_1:-51386697 | Msa0554130:CDS |
| GGATTGTATTTCACCGCGAC+AGG | 0.442618 | 4_1:-51384360 | Msa0554130:CDS |
| CTATGGTATTAGGCTTTACA+TGG | 0.446543 | 4_1:-51384916 | Msa0554130:CDS |
| CCCCAAAGACCTTTGCACTC+TGG | 0.446961 | 4_1:+51384792 | None:intergenic |
| GATTTGGAGATGAGATTAAG+AGG | 0.447085 | 4_1:-51384624 | Msa0554130:CDS |
| AAATAATCTACAACACAATT+GGG | 0.449065 | 4_1:-51384455 | Msa0554130:CDS |
| TTATCTTGTAGCTTTGCTCA+TGG | 0.454159 | 4_1:-51384646 | Msa0554130:CDS |
| GAGGGTTGGAGATTCTTGAT+TGG | 0.455708 | 4_1:+51384727 | None:intergenic |
| TCTTTCTCTTGATTAGTTCA+CGG | 0.458319 | 4_1:+51384685 | None:intergenic |
| CACCACAAGACAAACCACTT+TGG | 0.464218 | 4_1:-51387000 | Msa0554130:CDS |
| TTCAAACTTCATCATGGACT+TGG | 0.476811 | 4_1:-51386926 | Msa0554130:CDS |
| AGGAGAAGCGTGGATTGATA+GGG | 0.479358 | 4_1:+51387364 | None:intergenic |
| ACTATAAACGATGTGGTTTG+TGG | 0.485396 | 4_1:-51384948 | Msa0554130:CDS |
| CCTATAAGGTCAGGATATGA+AGG | 0.491466 | 4_1:-51386683 | Msa0554130:CDS |
| CTACTATTTAAATTGTACCT+TGG | 0.493517 | 4_1:-51383430 | Msa0554130:three_prime_UTR |
| ATAGCTAATGAATTATCAAA+TGG | 0.494135 | 4_1:+51387411 | None:intergenic |
| GGAAAAGATAGAGGAAGAGA+AGG | 0.494447 | 4_1:+51386848 | None:intergenic |
| TATTGTCCATGTGGACTCAC+TGG | 0.498507 | 4_1:+51387489 | None:intergenic |
| AATATATAGAACCATAATAG+AGG | 0.500079 | 4_1:+51387344 | None:intergenic |
| TCCCAAAGTGGTTTGTCTTG+TGG | 0.504133 | 4_1:+51386998 | None:intergenic |
| TATTATGGTGCAAGCTGCAT+TGG | 0.522660 | 4_1:+51386949 | None:intergenic |
| GACAAAACACCTATAAGGTC+AGG | 0.527058 | 4_1:-51386692 | Msa0554130:CDS |
| ATTGAAAATGCCAAACATAG+TGG | 0.527913 | 4_1:+51383492 | None:intergenic |
| GCATAATAGGGTGATGGCAA+TGG | 0.529822 | 4_1:+51383564 | None:intergenic |
| GGTCGTGAAGGAAAAGATAG+AGG | 0.529870 | 4_1:+51386839 | None:intergenic |
| AATACAATCCATTTACTGGA+TGG | 0.534184 | 4_1:+51384373 | None:intergenic |
| CTTCATCATGGACTTGGTGA+TGG | 0.542615 | 4_1:-51386920 | Msa0554130:CDS |
| ATAACATGAATTTCCCAAAG+TGG | 0.544140 | 4_1:+51386986 | None:intergenic |
| GAATCTAATTGTGGTCGTGA+AGG | 0.551348 | 4_1:+51386827 | None:intergenic |
| AATCATATTCAAAGCAGCTA+TGG | 0.554384 | 4_1:-51383621 | Msa0554130:CDS |
| GGGTAGGATGAAATGGCAAA+AGG | 0.556043 | 4_1:-51387146 | Msa0554130:CDS |
| AATAAAATCAAAACTCAAAG+TGG | 0.557314 | 4_1:-51386600 | Msa0554130:intron |
| GGTGATGGTTACTCTCTCAT+GGG | 0.557425 | 4_1:-51386905 | Msa0554130:CDS |
| ATAATATTCAAACTTCATCA+TGG | 0.563538 | 4_1:-51386932 | Msa0554130:CDS |
| CCAAACAAACTCAAGAGGGT+TGG | 0.570642 | 4_1:+51384713 | None:intergenic |
| TTGTATTTCACCGCGACAGG+TGG | 0.573211 | 4_1:-51384357 | Msa0554130:CDS |
| CCAGAGTGCAAAGGTCTTTG+GGG | 0.576472 | 4_1:-51384792 | Msa0554130:CDS |
| AAACGATGTGGTTTGTGGAA+TGG | 0.576850 | 4_1:-51384943 | Msa0554130:CDS |
| CTCAACACAAGAAATATTGG+AGG | 0.579193 | 4_1:-51384843 | Msa0554130:CDS |
| AAACTAGCATAATAGGGTGA+TGG | 0.584421 | 4_1:+51383558 | None:intergenic |
| ATTACAGGTAAAAGACAAAG+AGG | 0.585818 | 4_1:-51387167 | Msa0554130:intron |
| AAAAGTCCATAATTAGGTGG+TGG | 0.588718 | 4_1:+51383527 | None:intergenic |
| TACCTCAGGTCCACCTGTCG+CGG | 0.601334 | 4_1:+51384347 | None:intergenic |
| CAAGAGCCAGTGAGTCCACA+TGG | 0.602495 | 4_1:-51387495 | Msa0554130:CDS |
| ATGAAGACATCTTTGAGCAA+AGG | 0.607249 | 4_1:+51387387 | None:intergenic |
| GGAATTTGTCCATTATGTTG+TGG | 0.611791 | 4_1:+51387529 | None:intergenic |
| GAATTCCAAACAAACTCAAG+AGG | 0.614444 | 4_1:+51384708 | None:intergenic |
| TGATAGTGATATGGTTGACA+AGG | 0.623451 | 4_1:+51386640 | None:intergenic |
| AGGTAAAAGACAAAGAGGGT+AGG | 0.627880 | 4_1:-51387162 | Msa0554130:CDS |
| CTTAAAAGTCCATAATTAGG+TGG | 0.628105 | 4_1:+51383524 | None:intergenic |
| AAGAGCAAATTCCACAGCAG+TGG | 0.634903 | 4_1:-51384871 | Msa0554130:CDS |
| TGGAATAGCTAATTCCAGGA+AGG | 0.635155 | 4_1:+51387431 | None:intergenic |
| CACCGCGACAGGTGGACCTG+AGG | 0.637213 | 4_1:-51384349 | Msa0554130:intron |
| TGGAGGTTACCAATCAGTGA+AGG | 0.641441 | 4_1:-51384826 | Msa0554130:CDS |
| CAGAGTGCAAAGGTCTTTGG+GGG | 0.647099 | 4_1:-51384791 | Msa0554130:CDS |
| GTTCTTATGTCTAACCTCGT+AGG | 0.647799 | 4_1:-51384423 | Msa0554130:CDS |
| AATTCCAAACAAACTCAAGA+GGG | 0.648821 | 4_1:+51384709 | None:intergenic |
| GTTGAGCATTACCACTGCTG+TGG | 0.649328 | 4_1:+51384860 | None:intergenic |
| GTTGCAGACTATAAACGATG+TGG | 0.656901 | 4_1:-51384955 | Msa0554130:intron |
| GATGAGATTAAGAGGACCTG+AGG | 0.656997 | 4_1:-51384616 | Msa0554130:intron |
| TTACAGGTAAAAGACAAAGA+GGG | 0.674677 | 4_1:-51387166 | Msa0554130:intron |
| ACCATAATAGAGGAGAAGCG+TGG | 0.686651 | 4_1:+51387354 | None:intergenic |
| CTGTTGAAATATTGTCCATG+TGG | 0.714984 | 4_1:+51387480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAA+AGG | - | chr4_1:51385402-51385421 | Msa0554130:intron | 0.0% |
| !! | TATATATATATATATATAAA+GGG | - | chr4_1:51385403-51385422 | Msa0554130:intron | 0.0% |
| !! | TATATTAATTAAAATTTGGT+AGG | + | chr4_1:51383681-51383700 | None:intergenic | 10.0% |
| !!! | TACCAAATTTTAATTAATAT+AGG | - | chr4_1:51383680-51383699 | Msa0554130:CDS | 10.0% |
| !!! | AAATTAACAAAATTTGATTT+TGG | - | chr4_1:51384466-51384485 | Msa0554130:CDS | 10.0% |
| !!! | AAAGTTTATTTTTATTAACA+AGG | - | chr4_1:51385615-51385634 | Msa0554130:intron | 10.0% |
| !!! | AAGTTTATTTTTATTAACAA+GGG | - | chr4_1:51385616-51385635 | Msa0554130:intron | 10.0% |
| !!! | AAATAAAACATCAAAATTTT+AGG | + | chr4_1:51386405-51386424 | None:intergenic | 10.0% |
| !! | TGCCTATATTAATTAAAATT+TGG | + | chr4_1:51383685-51383704 | None:intergenic | 15.0% |
| !! | TTTAATTAATATAGGCATTA+AGG | - | chr4_1:51383688-51383707 | Msa0554130:CDS | 15.0% |
| !! | ATTCTAATACTATTAATTAC+AGG | - | chr4_1:51383784-51383803 | Msa0554130:intron | 15.0% |
| !!! | CATAAACTATTTTTATAAAG+AGG | - | chr4_1:51384669-51384688 | Msa0554130:CDS | 15.0% |
| !! | TTATAGAAAAAGTTGTTTAA+AGG | - | chr4_1:51385037-51385056 | Msa0554130:intron | 15.0% |
| !! | TTATACAAAAAGTTATACAT+TGG | - | chr4_1:51385950-51385969 | Msa0554130:intron | 15.0% |
| !! | ATTAAGTTTGATTAACTAAT+TGG | - | chr4_1:51385973-51385992 | Msa0554130:intron | 15.0% |
| !!! | ATTAATGTTCTCTATTTTAT+TGG | - | chr4_1:51386465-51386484 | Msa0554130:intron | 15.0% |
| !!! | TTAATGTTCTCTATTTTATT+GGG | - | chr4_1:51386466-51386485 | Msa0554130:intron | 15.0% |
| !! | TCACAATTGTATATATTTAT+TGG | - | chr4_1:51387080-51387099 | Msa0554130:CDS | 15.0% |
| !! | ATAGCTAATGAATTATCAAA+TGG | + | chr4_1:51383558-51383577 | None:intergenic | 20.0% |
| !! | AATATATAGAACCATAATAG+AGG | + | chr4_1:51383625-51383644 | None:intergenic | 20.0% |
| !!! | TAAAAGGTCAATTTTGATTA+AGG | + | chr4_1:51383746-51383765 | None:intergenic | 20.0% |
| !! | ATGATGAAGTTTGAATATTA+TGG | + | chr4_1:51384035-51384054 | None:intergenic | 20.0% |
| !! | ATAATATTCAAACTTCATCA+TGG | - | chr4_1:51384034-51384053 | Msa0554130:intron | 20.0% |
| !! | AATAAAATCAAAACTCAAAG+TGG | - | chr4_1:51384366-51384385 | Msa0554130:CDS | 20.0% |
| !! | TACAAGTCTTACTAAAAAAA+CGG | - | chr4_1:51384551-51384570 | Msa0554130:intron | 20.0% |
| !!! | AAGTTGTTTAAAGGTATAAT+TGG | - | chr4_1:51385046-51385065 | Msa0554130:intron | 20.0% |
| !!! | AGTTGTTTAAAGGTATAATT+GGG | - | chr4_1:51385047-51385066 | Msa0554130:intron | 20.0% |
| !! | ATTGGATTGAATAGTTATAA+CGG | - | chr4_1:51385271-51385290 | Msa0554130:intron | 20.0% |
| !!! | AACTTGCTAAAACATTTATA+AGG | + | chr4_1:51385471-51385490 | None:intergenic | 20.0% |
| !! | TAATTAACAAAACTTGATTC+TGG | + | chr4_1:51385883-51385902 | None:intergenic | 20.0% |
| !! | ATAATCCAATGATATGATTA+CGG | + | chr4_1:51385931-51385950 | None:intergenic | 20.0% |
| !! | AAAATAATCTACAACACAAT+TGG | - | chr4_1:51386510-51386529 | Msa0554130:intron | 20.0% |
| !! | AAATAATCTACAACACAATT+GGG | - | chr4_1:51386511-51386530 | Msa0554130:intron | 20.0% |
| !! | ATATAAATAAAATTCACCAC+TGG | - | chr4_1:51386771-51386790 | Msa0554130:CDS | 20.0% |
| !! | AAAATAAAAAAATAGGGTGT+GGG | + | chr4_1:51386878-51386897 | None:intergenic | 20.0% |
| !! | AAAAATAAAAAAATAGGGTG+TGG | + | chr4_1:51386879-51386898 | None:intergenic | 20.0% |
| !! | TTATAGAATTCAAAATCTCA+TGG | + | chr4_1:51386915-51386934 | None:intergenic | 20.0% |
| ! | TTTATGGTTTCAGGAAATAT+GGG | + | chr4_1:51383878-51383897 | None:intergenic | 25.0% |
| !! | TTTTATGGTTTCAGGAAATA+TGG | + | chr4_1:51383879-51383898 | None:intergenic | 25.0% |
| !!! | TTCACATGATGATGTTTTTA+TGG | + | chr4_1:51383894-51383913 | None:intergenic | 25.0% |
| !!! | GCATATTTTGAATCTAATTG+TGG | + | chr4_1:51384151-51384170 | None:intergenic | 25.0% |
| !!! | TTAGATATCTCATCCTTTTT+TGG | - | chr4_1:51384199-51384218 | Msa0554130:intron | 25.0% |
| !!! | AACAAAATTTGATTTTGGTG+AGG | - | chr4_1:51384471-51384490 | Msa0554130:intron | 25.0% |
| !!! | TCAACTATCCTATTTTTATG+TGG | - | chr4_1:51384589-51384608 | Msa0554130:intron | 25.0% |
| ! | TATAAAATAATAGCGAAGAC+AGG | - | chr4_1:51384697-51384716 | Msa0554130:CDS | 25.0% |
| !! | CAATATAAATAGCGGAAAAA+CGG | + | chr4_1:51384734-51384753 | None:intergenic | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | + | chr4_1:51384874-51384893 | None:intergenic | 25.0% |
| !!! | GACACAAACATTTTTTTTGA+AGG | - | chr4_1:51384961-51384980 | Msa0554130:intron | 25.0% |
| ! | GTATAATTGGGATAATGAAA+AGG | - | chr4_1:51385059-51385078 | Msa0554130:intron | 25.0% |
| ! | ACACACATATATATATAGTC+AGG | - | chr4_1:51385150-51385169 | Msa0554130:intron | 25.0% |
| ! | GTTATAACTATTCAATCCAA+TGG | + | chr4_1:51385272-51385291 | None:intergenic | 25.0% |
| ! | TAATCCAATGATATGATTAC+GGG | + | chr4_1:51385930-51385949 | None:intergenic | 25.0% |
| ! | CTTAATCATATGTCTAAATC+GGG | + | chr4_1:51386723-51386742 | None:intergenic | 25.0% |
| ! | CCTTAATCATATGTCTAAAT+CGG | + | chr4_1:51386724-51386743 | None:intergenic | 25.0% |
| ! | GTATAGAAGGAATATCTTAA+TGG | - | chr4_1:51386797-51386816 | Msa0554130:CDS | 25.0% |
| ! | TCTGAACACCAAAAAAAAAT+AGG | - | chr4_1:51387002-51387021 | Msa0554130:CDS | 25.0% |
| ! | CTGAACACCAAAAAAAAATA+GGG | - | chr4_1:51387003-51387022 | Msa0554130:CDS | 25.0% |
| ! | ATACATTCTACGTGTTTATA+AGG | + | chr4_1:51387035-51387054 | None:intergenic | 25.0% |
| !! | ATATGGAAGTGTATTATGTA+TGG | + | chr4_1:51387130-51387149 | None:intergenic | 25.0% |
| ! | ATAGAGAAACTAGCATAATA+GGG | + | chr4_1:51387417-51387436 | None:intergenic | 25.0% |
| ! | AATAGAGAAACTAGCATAAT+AGG | + | chr4_1:51387418-51387437 | None:intergenic | 25.0% |
| ! | TGACTTAAAAGTCCATAATT+AGG | + | chr4_1:51387448-51387467 | None:intergenic | 25.0% |
| ! | CTACTATTTAAATTGTACCT+TGG | - | chr4_1:51387536-51387555 | Msa0554130:exon | 25.0% |
| !!! | AAGGTCAATTTTGATTAAGG+AGG | + | chr4_1:51383743-51383762 | None:intergenic | 30.0% |
| ATTACAGGTAAAAGACAAAG+AGG | - | chr4_1:51383799-51383818 | Msa0554130:intron | 30.0% | |
| TTACAGGTAAAAGACAAAGA+GGG | - | chr4_1:51383800-51383819 | Msa0554130:intron | 30.0% | |
| !! | GATGATGTTTTTATGGTTTC+AGG | + | chr4_1:51383887-51383906 | None:intergenic | 30.0% |
| ATAACATGAATTTCCCAAAG+TGG | + | chr4_1:51383983-51384002 | None:intergenic | 30.0% | |
| AAGATGACAAAACACCTATA+AGG | - | chr4_1:51384269-51384288 | Msa0554130:intron | 30.0% | |
| ! | TTGATCAAGTGATAGTGATA+TGG | + | chr4_1:51384338-51384357 | None:intergenic | 30.0% |
| !! | AAAGTCTGTGTTTTTACTCT+TGG | - | chr4_1:51384528-51384547 | Msa0554130:intron | 30.0% |
| !!! | TCCTATTTTTATGTGGTTCA+TGG | - | chr4_1:51384596-51384615 | Msa0554130:intron | 30.0% |
| !!! | CCTATTTTTATGTGGTTCAT+GGG | - | chr4_1:51384597-51384616 | Msa0554130:intron | 30.0% |
| !!! | CTATTTTTATGTGGTTCATG+GGG | - | chr4_1:51384598-51384617 | Msa0554130:intron | 30.0% |
| CGTTAGAGCAATATAAATAG+CGG | + | chr4_1:51384742-51384761 | None:intergenic | 30.0% | |
| ATAGATAATCATGGTTCGTT+TGG | + | chr4_1:51384865-51384884 | None:intergenic | 30.0% | |
| TAGTTATAACGGCTTAGATT+TGG | - | chr4_1:51385282-51385301 | Msa0554130:intron | 30.0% | |
| ! | TAAATTTTCGTTTGCAATCG+TGG | - | chr4_1:51385564-51385583 | Msa0554130:intron | 30.0% |
| TTAACCCGTAATCATATCAT+TGG | - | chr4_1:51385923-51385942 | Msa0554130:intron | 30.0% | |
| ATGCTCAACACAAGAAATAT+TGG | - | chr4_1:51386120-51386139 | Msa0554130:intron | 30.0% | |
| !! | ATTCTTGATTGGCTTACTTT+AGG | + | chr4_1:51386231-51386250 | None:intergenic | 30.0% |
| AATTCCAAACAAACTCAAGA+GGG | + | chr4_1:51386260-51386279 | None:intergenic | 30.0% | |
| ! | TCTTTCTCTTGATTAGTTCA+CGG | + | chr4_1:51386284-51386303 | None:intergenic | 30.0% |
| ! | TTTTATTGGGTTTGTGTTTC+AGG | - | chr4_1:51386479-51386498 | Msa0554130:intron | 30.0% |
| AATACAATCCATTTACTGGA+TGG | + | chr4_1:51386596-51386615 | None:intergenic | 30.0% | |
| GTGAAATACAATCCATTTAC+TGG | + | chr4_1:51386600-51386619 | None:intergenic | 30.0% | |
| AAAATACATGCATATACCTC+AGG | + | chr4_1:51386636-51386655 | None:intergenic | 30.0% | |
| AATATTTGAATTGACCAGAG+TGG | - | chr4_1:51386663-51386682 | Msa0554130:CDS | 30.0% | |
| ! | TAGTGTTATTAAATCCACTC+TGG | + | chr4_1:51386680-51386699 | None:intergenic | 30.0% |
| CCGATTTAGACATATGATTA+AGG | - | chr4_1:51386721-51386740 | Msa0554130:CDS | 30.0% | |
| AAATAAAATTCACCACTGGT+AGG | - | chr4_1:51386775-51386794 | Msa0554130:CDS | 30.0% | |
| ! | ATTTTTCCACCCTAAAATAG+GGG | + | chr4_1:51386954-51386973 | None:intergenic | 30.0% |
| ! | CATTTTTCCACCCTAAAATA+GGG | + | chr4_1:51386955-51386974 | None:intergenic | 30.0% |
| !! | TCATTTTTCCACCCTAAAAT+AGG | + | chr4_1:51386956-51386975 | None:intergenic | 30.0% |
| ATACACTTCCATATCTACTT+TGG | - | chr4_1:51387136-51387155 | Msa0554130:CDS | 30.0% | |
| ATATCCAACCAAAGTAGATA+TGG | + | chr4_1:51387147-51387166 | None:intergenic | 30.0% | |
| AATCATATTCAAAGCAGCTA+TGG | - | chr4_1:51387345-51387364 | Msa0554130:intron | 30.0% | |
| CTTAAAAGTCCATAATTAGG+TGG | + | chr4_1:51387445-51387464 | None:intergenic | 30.0% | |
| ATTGAAAATGCCAAACATAG+TGG | + | chr4_1:51387477-51387496 | None:intergenic | 30.0% | |
| AGCAATAACTATTGCATCAA+TGG | + | chr4_1:51387518-51387537 | None:intergenic | 30.0% | |
| GGAATTTGTCCATTATGTTG+TGG | + | chr4_1:51383440-51383459 | None:intergenic | 35.0% | |
| CTGTTGAAATATTGTCCATG+TGG | + | chr4_1:51383489-51383508 | None:intergenic | 35.0% | |
| CAAATGGAATAGCTAATTCC+AGG | + | chr4_1:51383542-51383561 | None:intergenic | 35.0% | |
| ATGAAGACATCTTTGAGCAA+AGG | + | chr4_1:51383582-51383601 | None:intergenic | 35.0% | |
| TTCAAACTTCATCATGGACT+TGG | - | chr4_1:51384040-51384059 | Msa0554130:intron | 35.0% | |
| ATCTGATATGGAGCCAAAAA+AGG | + | chr4_1:51384215-51384234 | None:intergenic | 35.0% | |
| !! | TTTGGCTCCATATCAGATTT+TGG | - | chr4_1:51384217-51384236 | Msa0554130:intron | 35.0% |
| GCTTGATCCAAAATCTGATA+TGG | + | chr4_1:51384227-51384246 | None:intergenic | 35.0% | |
| ! | TGATAGTGATATGGTTGACA+AGG | + | chr4_1:51384329-51384348 | None:intergenic | 35.0% |
| CCCATGAACCACATAAAAAT+AGG | + | chr4_1:51384600-51384619 | None:intergenic | 35.0% | |
| ATAATCATGGTTCGTTTGGT+TGG | + | chr4_1:51384861-51384880 | None:intergenic | 35.0% | |
| TATATATGTGTGTGTGTGTG+TGG | + | chr4_1:51385143-51385162 | None:intergenic | 35.0% | |
| TAAGTCTTTCGACTTACATC+TGG | + | chr4_1:51385187-51385206 | None:intergenic | 35.0% | |
| CCATGTGGTCAATTTATACA+GGG | + | chr4_1:51385224-51385243 | None:intergenic | 35.0% | |
| ACCATGTGGTCAATTTATAC+AGG | + | chr4_1:51385225-51385244 | None:intergenic | 35.0% | |
| !!! | ACCACATGGTCTATTTTTGT+TGG | - | chr4_1:51385235-51385254 | Msa0554130:intron | 35.0% |
| !!! | CCACATGGTCTATTTTTGTT+GGG | - | chr4_1:51385236-51385255 | Msa0554130:intron | 35.0% |
| !!! | TAAGTCTTTTGACTTACACC+TGG | - | chr4_1:51385307-51385326 | Msa0554130:intron | 35.0% |
| ! | TTCCATCACGATTTTTGTCA+CGG | + | chr4_1:51385834-51385853 | None:intergenic | 35.0% |
| ACTATAAACGATGTGGTTTG+TGG | - | chr4_1:51386018-51386037 | Msa0554130:intron | 35.0% | |
| GAATGGTCTTCTATGGTATT+AGG | - | chr4_1:51386040-51386059 | Msa0554130:intron | 35.0% | |
| CTATGGTATTAGGCTTTACA+TGG | - | chr4_1:51386050-51386069 | Msa0554130:intron | 35.0% | |
| CTCAACACAAGAAATATTGG+AGG | - | chr4_1:51386123-51386142 | Msa0554130:intron | 35.0% | |
| TTTGCATTTCCTTCACTGAT+TGG | + | chr4_1:51386152-51386171 | None:intergenic | 35.0% | |
| !! | GATTGGCTTACTTTAGGTAT+TGG | + | chr4_1:51386225-51386244 | None:intergenic | 35.0% |
| GAATTCCAAACAAACTCAAG+AGG | + | chr4_1:51386261-51386280 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTGATTAGTTCAC+GGG | + | chr4_1:51386283-51386302 | None:intergenic | 35.0% |
| ! | TTATCTTGTAGCTTTGCTCA+TGG | - | chr4_1:51386320-51386339 | Msa0554130:intron | 35.0% |
| GATTTGGAGATGAGATTAAG+AGG | - | chr4_1:51386342-51386361 | Msa0554130:intron | 35.0% | |
| ! | ATGAGTTTTCCCCCTATTTT+AGG | - | chr4_1:51386941-51386960 | Msa0554130:CDS | 35.0% |
| ! | TGAGTTTTCCCCCTATTTTA+GGG | - | chr4_1:51386942-51386961 | Msa0554130:CDS | 35.0% |
| ! | TTTTTCCACCCTAAAATAGG+GGG | + | chr4_1:51386953-51386972 | None:intergenic | 35.0% |
| !!! | GAACACGCCCTATTTTTTTT+TGG | + | chr4_1:51387013-51387032 | None:intergenic | 35.0% |
| GAAGTGTATTATGTATGGTG+TGG | + | chr4_1:51387125-51387144 | None:intergenic | 35.0% | |
| ACTTCCATATCTACTTTGGT+TGG | - | chr4_1:51387140-51387159 | Msa0554130:CDS | 35.0% | |
| CTTTAATTACCTCTTGTGTG+TGG | - | chr4_1:51387203-51387222 | Msa0554130:intron | 35.0% | |
| AATCGCCATGAAAACCAAAA+AGG | - | chr4_1:51387273-51387292 | Msa0554130:intron | 35.0% | |
| ATCGCCATGAAAACCAAAAA+GGG | - | chr4_1:51387274-51387293 | Msa0554130:intron | 35.0% | |
| ! | TTCATCTATGAACCCCTTTT+TGG | + | chr4_1:51387290-51387309 | None:intergenic | 35.0% |
| AAACTAGCATAATAGGGTGA+TGG | + | chr4_1:51387411-51387430 | None:intergenic | 35.0% | |
| CTATTACCACCACCTAATTA+TGG | - | chr4_1:51387433-51387452 | Msa0554130:CDS | 35.0% | |
| AAAAGTCCATAATTAGGTGG+TGG | + | chr4_1:51387442-51387461 | None:intergenic | 35.0% | |
| TTCATATGTCTTTGCCTTCC+TGG | - | chr4_1:51383521-51383540 | Msa0554130:three_prime_UTR | 40.0% | |
| TGGAATAGCTAATTCCAGGA+AGG | + | chr4_1:51383538-51383557 | None:intergenic | 40.0% | |
| AGGTAAAAGACAAAGAGGGT+AGG | - | chr4_1:51383804-51383823 | Msa0554130:intron | 40.0% | |
| ACAAAGAGGGTAGGATGAAA+TGG | - | chr4_1:51383813-51383832 | Msa0554130:intron | 40.0% | |
| GGAATCTTTAAGTGCTCTTC+AGG | + | chr4_1:51383857-51383876 | None:intergenic | 40.0% | |
| ACCACAAGACAAACCACTTT+GGG | - | chr4_1:51383967-51383986 | Msa0554130:intron | 40.0% | |
| TATTATGGTGCAAGCTGCAT+TGG | + | chr4_1:51384020-51384039 | None:intergenic | 40.0% | |
| GGAAAAGATAGAGGAAGAGA+AGG | + | chr4_1:51384121-51384140 | None:intergenic | 40.0% | |
| GAATCTAATTGTGGTCGTGA+AGG | + | chr4_1:51384142-51384161 | None:intergenic | 40.0% | |
| GACAAAACACCTATAAGGTC+AGG | - | chr4_1:51384274-51384293 | Msa0554130:intron | 40.0% | |
| CCTTCATATCCTGACCTTAT+AGG | + | chr4_1:51384286-51384305 | None:intergenic | 40.0% | |
| CCTATAAGGTCAGGATATGA+AGG | - | chr4_1:51384283-51384302 | Msa0554130:intron | 40.0% | |
| GATATGGTTGACAAGGTAAC+AGG | + | chr4_1:51384322-51384341 | None:intergenic | 40.0% | |
| GTGGTCAATTTATACAGGGT+TGG | + | chr4_1:51385220-51385239 | None:intergenic | 40.0% | |
| CCCTGTATAAATTGACCACA+TGG | - | chr4_1:51385221-51385240 | Msa0554130:intron | 40.0% | |
| CCCAACAAAAATAGACCATG+TGG | + | chr4_1:51385239-51385258 | None:intergenic | 40.0% | |
| GTTGGGATATTCTTAGCCAT+TGG | - | chr4_1:51385253-51385272 | Msa0554130:intron | 40.0% | |
| AACCGTGACAAAAATCGTGA+TGG | - | chr4_1:51385829-51385848 | Msa0554130:intron | 40.0% | |
| GTTGCAGACTATAAACGATG+TGG | - | chr4_1:51386011-51386030 | Msa0554130:intron | 40.0% | |
| ! | AAACGATGTGGTTTGTGGAA+TGG | - | chr4_1:51386023-51386042 | Msa0554130:intron | 40.0% |
| GTTTGTGGAATGGTCTTCTA+TGG | - | chr4_1:51386033-51386052 | Msa0554130:intron | 40.0% | |
| ATGCAAAAACCAGAGTGCAA+AGG | - | chr4_1:51386165-51386184 | Msa0554130:intron | 40.0% | |
| ! | TGTAGCTTTGCTCATGGATT+TGG | - | chr4_1:51386326-51386345 | Msa0554130:intron | 40.0% |
| ATTAATGTGTGACACACCTC+AGG | + | chr4_1:51386369-51386388 | None:intergenic | 40.0% | |
| GTTCTTATGTCTAACCTCGT+AGG | - | chr4_1:51386543-51386562 | Msa0554130:intron | 40.0% | |
| ACCGCTAGAAAAAATGGCTT+TGG | - | chr4_1:51386566-51386585 | Msa0554130:intron | 40.0% | |
| !!! | GCCAAAGCCATTTTTTCTAG+CGG | + | chr4_1:51386570-51386589 | None:intergenic | 40.0% |
| TTGGCAAACCATCCAGTAAA+TGG | - | chr4_1:51386585-51386604 | Msa0554130:intron | 40.0% | |
| ATTCCTTCTATACCTACCAG+TGG | + | chr4_1:51386790-51386809 | None:intergenic | 40.0% | |
| AAAAAATAGGGTGTGGGAGA+AGG | + | chr4_1:51386872-51386891 | None:intergenic | 40.0% | |
| TCGCCATGAAAACCAAAAAG+GGG | - | chr4_1:51387275-51387294 | Msa0554130:intron | 40.0% | |
| !!! | GAACCCCTTTTTGGTTTTCA+TGG | + | chr4_1:51387281-51387300 | None:intergenic | 40.0% |
| ! | CTGGCTCTTGAACTTCTTCA+AGG | + | chr4_1:51383461-51383480 | None:intergenic | 45.0% |
| TATTGTCCATGTGGACTCAC+TGG | + | chr4_1:51383480-51383499 | None:intergenic | 45.0% | |
| ! | AGGAGAAGCGTGGATTGATA+GGG | + | chr4_1:51383605-51383624 | None:intergenic | 45.0% |
| TCCACGCTTCTCCTCTATTA+TGG | - | chr4_1:51383611-51383630 | Msa0554130:exon | 45.0% | |
| ACCATAATAGAGGAGAAGCG+TGG | + | chr4_1:51383615-51383634 | None:intergenic | 45.0% | |
| GGGTAGGATGAAATGGCAAA+AGG | - | chr4_1:51383820-51383839 | Msa0554130:intron | 45.0% | |
| CACCACAAGACAAACCACTT+TGG | - | chr4_1:51383966-51383985 | Msa0554130:intron | 45.0% | |
| ! | TCCCAAAGTGGTTTGTCTTG+TGG | + | chr4_1:51383971-51383990 | None:intergenic | 45.0% |
| !! | TGCAAGCTGCATTGGTTGTT+GGG | + | chr4_1:51384012-51384031 | None:intergenic | 45.0% |
| !! | CTTCATCATGGACTTGGTGA+TGG | - | chr4_1:51384046-51384065 | Msa0554130:intron | 45.0% |
| !! | TGGTGATGGTTACTCTCTCA+TGG | - | chr4_1:51384060-51384079 | Msa0554130:intron | 45.0% |
| ! | GGTGATGGTTACTCTCTCAT+GGG | - | chr4_1:51384061-51384080 | Msa0554130:intron | 45.0% |
| GGTCGTGAAGGAAAAGATAG+AGG | + | chr4_1:51384130-51384149 | None:intergenic | 45.0% | |
| ! | TGACTTACACCTGGTGTCAA+CGG | - | chr4_1:51385316-51385335 | Msa0554130:intron | 45.0% |
| AAGAGCAAATTCCACAGCAG+TGG | - | chr4_1:51386095-51386114 | Msa0554130:intron | 45.0% | |
| TGGAGGTTACCAATCAGTGA+AGG | - | chr4_1:51386140-51386159 | Msa0554130:intron | 45.0% | |
| AACCAGAGTGCAAAGGTCTT+TGG | - | chr4_1:51386172-51386191 | Msa0554130:intron | 45.0% | |
| ACCAGAGTGCAAAGGTCTTT+GGG | - | chr4_1:51386173-51386192 | Msa0554130:intron | 45.0% | |
| GAGGGTTGGAGATTCTTGAT+TGG | + | chr4_1:51386242-51386261 | None:intergenic | 45.0% | |
| CCAAACAAACTCAAGAGGGT+TGG | + | chr4_1:51386256-51386275 | None:intergenic | 45.0% | |
| ! | CCAACCCTCTTGAGTTTGTT+TGG | - | chr4_1:51386253-51386272 | Msa0554130:intron | 45.0% |
| GATGAGATTAAGAGGACCTG+AGG | - | chr4_1:51386350-51386369 | Msa0554130:intron | 45.0% | |
| !!! | TTTTTTCTAGCGGTCCTACG+AGG | + | chr4_1:51386560-51386579 | None:intergenic | 45.0% |
| CGTAGGACCGCTAGAAAAAA+TGG | - | chr4_1:51386560-51386579 | Msa0554130:intron | 45.0% | |
| TCACCACTGGTAGGTATAGA+AGG | - | chr4_1:51386784-51386803 | Msa0554130:CDS | 45.0% | |
| !! | GTTTTCCCCCTATTTTAGGG+TGG | - | chr4_1:51386945-51386964 | Msa0554130:CDS | 45.0% |
| ! | GCATAATAGGGTGATGGCAA+TGG | + | chr4_1:51387405-51387424 | None:intergenic | 45.0% |
| GTCATGCAAGCCACTATGTT+TGG | - | chr4_1:51387464-51387483 | Msa0554130:CDS | 45.0% | |
| !! | AAATAATTAATGATAATAAA+AGG | + | chr4_1:51383762-51383781 | None:intergenic | 5.0% |
| !!! | AATATAATTTTTTTTTTTGA+AGG | - | chr4_1:51384905-51384924 | Msa0554130:CDS | 5.0% |
| !! | TAAAGAAAAATAAAAAAATA+GGG | + | chr4_1:51386884-51386903 | None:intergenic | 5.0% |
| !! | TTAAAGAAAAATAAAAAAAT+AGG | + | chr4_1:51386885-51386904 | None:intergenic | 5.0% |
| ! | GAGGAGAAGCGTGGATTGAT+AGG | + | chr4_1:51383606-51383625 | None:intergenic | 50.0% |
| !! | GTGCAAGCTGCATTGGTTGT+TGG | + | chr4_1:51384013-51384032 | None:intergenic | 50.0% |
| AGTCATGATCCGTTGACACC+AGG | + | chr4_1:51385328-51385347 | None:intergenic | 50.0% | |
| GTTGAGCATTACCACTGCTG+TGG | + | chr4_1:51386109-51386128 | None:intergenic | 50.0% | |
| CCAGAGTGCAAAGGTCTTTG+GGG | - | chr4_1:51386174-51386193 | Msa0554130:intron | 50.0% | |
| CAGAGTGCAAAGGTCTTTGG+GGG | - | chr4_1:51386175-51386194 | Msa0554130:intron | 50.0% | |
| GGATTGTATTTCACCGCGAC+AGG | - | chr4_1:51386606-51386625 | Msa0554130:CDS | 50.0% | |
| TTGTATTTCACCGCGACAGG+TGG | - | chr4_1:51386609-51386628 | Msa0554130:CDS | 50.0% | |
| ATGTCTAAATCGGGCAACGC+TGG | + | chr4_1:51386714-51386733 | None:intergenic | 50.0% | |
| TGTGGGAGAAGGTCATAAGG+TGG | + | chr4_1:51386861-51386880 | None:intergenic | 50.0% | |
| TACCTCTTGTGTGTGGTTGC+AGG | - | chr4_1:51387210-51387229 | Msa0554130:intron | 50.0% | |
| ATCCTGCAACCACACACAAG+AGG | + | chr4_1:51387215-51387234 | None:intergenic | 50.0% | |
| CAAGAGCCAGTGAGTCCACA+TGG | - | chr4_1:51383471-51383490 | Msa0554130:three_prime_UTR | 55.0% | |
| AGCGAAGACAGGCACTCATG+TGG | - | chr4_1:51384708-51384727 | Msa0554130:CDS | 55.0% | |
| CCCCAAAGACCTTTGCACTC+TGG | + | chr4_1:51386177-51386196 | None:intergenic | 55.0% | |
| GGGTGTGGGAGAAGGTCATA+AGG | + | chr4_1:51386864-51386883 | None:intergenic | 55.0% | |
| TACCTCAGGTCCACCTGTCG+CGG | + | chr4_1:51386622-51386641 | None:intergenic | 60.0% | |
| CACCGCGACAGGTGGACCTG+AGG | - | chr4_1:51386617-51386636 | Msa0554130:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51383429 | 51387559 | 51383429 | ID=Msa0554130;Name=Msa0554130 |
| chr4_1 | mRNA | 51383429 | 51387559 | 51383429 | ID=Msa0554130-mRNA-1;Parent=Msa0554130;Name=Msa0554130-mRNA-1;_AED=0.13;_eAED=0.13;_QI=18|1|1|1|1|1|5|187|466 |
| chr4_1 | exon | 51383429 | 51383756 | 51383429 | ID=Msa0554130-mRNA-1:exon:14733;Parent=Msa0554130-mRNA-1 |
| chr4_1 | exon | 51384350 | 51384487 | 51384350 | ID=Msa0554130-mRNA-1:exon:14732;Parent=Msa0554130-mRNA-1 |
| chr4_1 | exon | 51384617 | 51384970 | 51384617 | ID=Msa0554130-mRNA-1:exon:14731;Parent=Msa0554130-mRNA-1 |
| chr4_1 | exon | 51386601 | 51387182 | 51386601 | ID=Msa0554130-mRNA-1:exon:14730;Parent=Msa0554130-mRNA-1 |
| chr4_1 | exon | 51387356 | 51387559 | 51387356 | ID=Msa0554130-mRNA-1:exon:14729;Parent=Msa0554130-mRNA-1 |
| chr4_1 | five_prime_UTR | 51387542 | 51387559 | 51387542 | ID=Msa0554130-mRNA-1:five_prime_utr;Parent=Msa0554130-mRNA-1 |
| chr4_1 | CDS | 51387356 | 51387541 | 51387356 | ID=Msa0554130-mRNA-1:cds;Parent=Msa0554130-mRNA-1 |
| chr4_1 | CDS | 51386601 | 51387182 | 51386601 | ID=Msa0554130-mRNA-1:cds;Parent=Msa0554130-mRNA-1 |
| chr4_1 | CDS | 51384617 | 51384970 | 51384617 | ID=Msa0554130-mRNA-1:cds;Parent=Msa0554130-mRNA-1 |
| chr4_1 | CDS | 51384350 | 51384487 | 51384350 | ID=Msa0554130-mRNA-1:cds;Parent=Msa0554130-mRNA-1 |
| chr4_1 | CDS | 51383616 | 51383756 | 51383616 | ID=Msa0554130-mRNA-1:cds;Parent=Msa0554130-mRNA-1 |
| chr4_1 | three_prime_UTR | 51383429 | 51383615 | 51383429 | ID=Msa0554130-mRNA-1:three_prime_utr;Parent=Msa0554130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
