Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691070 | KEH30682.1 | 94.861 | 467 | 24 | 0 | 1 | 467 | 1 | 467 | 0.0 | 880 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691070 | sp|Q9M3B3|WSD4_ARATH | 27.632 | 456 | 298 | 9 | 6 | 438 | 14 | 460 | 3.19e-53 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691070 | A0A072ULU8 | 94.861 | 467 | 24 | 0 | 1 | 467 | 1 | 467 | 0.0 | 880 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0691070 | 0.802994 | 4.307838e-49 | -8.615850e-47 |
| Msa0608220 | Msa0691070 | 0.812995 | 3.201863e-51 | -8.615850e-47 |
| Msa0648540 | Msa0691070 | 0.901286 | 3.123113e-78 | -8.615850e-47 |
| Msa0322860 | Msa0691070 | 0.800075 | 1.708239e-48 | -8.615850e-47 |
| Msa0554130 | Msa0691070 | 0.884544 | 1.751526e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691070 | MtrunA17_Chr4g0040001 | 91.435 | 467 | 40 | 0 | 1 | 467 | 1 | 467 | 0.0 | 852 |
| Msa0691070 | MtrunA17_Chr4g0040231 | 82.655 | 467 | 81 | 0 | 1 | 467 | 1 | 467 | 0.0 | 776 |
| Msa0691070 | MtrunA17_Chr4g0040011 | 90.000 | 430 | 43 | 0 | 1 | 430 | 9 | 438 | 0.0 | 769 |
| Msa0691070 | MtrunA17_Chr4g0040221 | 80.086 | 467 | 88 | 3 | 1 | 467 | 1 | 462 | 0.0 | 748 |
| Msa0691070 | MtrunA17_Chr4g0040261 | 63.675 | 468 | 163 | 4 | 1 | 467 | 34 | 495 | 0.0 | 613 |
| Msa0691070 | MtrunA17_Chr4g0040251 | 60.944 | 466 | 175 | 4 | 1 | 465 | 1 | 460 | 0.0 | 593 |
| Msa0691070 | MtrunA17_Chr4g0040271 | 63.270 | 422 | 147 | 5 | 1 | 421 | 1 | 415 | 0.0 | 559 |
| Msa0691070 | MtrunA17_Chr7g0217051 | 55.724 | 463 | 200 | 3 | 6 | 467 | 7 | 465 | 0.0 | 550 |
| Msa0691070 | MtrunA17_Chr7g0248011 | 47.084 | 463 | 234 | 5 | 2 | 461 | 3 | 457 | 2.43e-151 | 439 |
| Msa0691070 | MtrunA17_Chr6g0457271 | 52.528 | 356 | 166 | 2 | 67 | 421 | 5 | 358 | 1.17e-137 | 400 |
| Msa0691070 | MtrunA17_Chr6g0457281 | 50.699 | 286 | 137 | 2 | 94 | 375 | 4 | 289 | 6.51e-104 | 311 |
| Msa0691070 | MtrunA17_Chr1g0147071 | 27.753 | 454 | 285 | 11 | 10 | 438 | 10 | 445 | 5.92e-51 | 179 |
| Msa0691070 | MtrunA17_Chr5g0393471 | 29.010 | 293 | 197 | 7 | 170 | 457 | 43 | 329 | 1.92e-28 | 115 |
| Msa0691070 | MtrunA17_Chr6g0457291 | 55.224 | 67 | 30 | 0 | 399 | 465 | 1 | 67 | 1.77e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691070 | AT3G49190.1 | 27.632 | 456 | 298 | 9 | 6 | 438 | 14 | 460 | 3.24e-54 | 189 |
| Msa0691070 | AT5G53390.1 | 27.848 | 474 | 316 | 10 | 10 | 467 | 15 | 478 | 1.83e-53 | 187 |
| Msa0691070 | AT3G49210.1 | 26.923 | 494 | 317 | 10 | 10 | 467 | 26 | 511 | 2.48e-48 | 174 |
| Msa0691070 | AT5G16350.3 | 27.991 | 443 | 290 | 13 | 7 | 438 | 4 | 428 | 4.48e-47 | 169 |
| Msa0691070 | AT3G49200.1 | 26.350 | 463 | 309 | 10 | 10 | 447 | 26 | 481 | 8.26e-47 | 169 |
| Msa0691070 | AT5G12420.1 | 26.549 | 452 | 297 | 11 | 10 | 438 | 7 | 446 | 1.28e-45 | 166 |
| Msa0691070 | AT2G38995.2 | 26.964 | 471 | 319 | 10 | 10 | 467 | 21 | 479 | 5.20e-44 | 161 |
| Msa0691070 | AT5G16350.1 | 27.233 | 459 | 293 | 13 | 7 | 438 | 4 | 448 | 5.45e-44 | 161 |
| Msa0691070 | AT5G12420.2 | 26.887 | 424 | 275 | 11 | 10 | 410 | 7 | 418 | 3.25e-43 | 159 |
| Msa0691070 | AT1G72110.1 | 25.792 | 442 | 305 | 8 | 1 | 430 | 3 | 433 | 7.24e-43 | 158 |
| Msa0691070 | AT5G22490.1 | 26.180 | 466 | 298 | 13 | 11 | 450 | 12 | 457 | 7.46e-43 | 158 |
| Msa0691070 | AT5G37300.1 | 27.577 | 388 | 256 | 8 | 56 | 430 | 60 | 435 | 1.48e-41 | 154 |
| Msa0691070 | AT5G37300.4 | 27.577 | 388 | 256 | 8 | 56 | 430 | 78 | 453 | 1.94e-41 | 154 |
| Msa0691070 | AT5G53380.1 | 25.536 | 466 | 303 | 13 | 6 | 445 | 4 | 451 | 2.50e-40 | 151 |
| Msa0691070 | AT2G38995.3 | 27.229 | 415 | 278 | 10 | 66 | 467 | 7 | 410 | 2.62e-38 | 144 |
| Msa0691070 | AT1G72110.2 | 25.339 | 442 | 298 | 9 | 1 | 430 | 3 | 424 | 5.48e-38 | 144 |
| Msa0691070 | AT2G38995.4 | 26.703 | 367 | 248 | 7 | 66 | 421 | 7 | 363 | 1.49e-35 | 136 |
| Msa0691070 | AT5G16350.2 | 27.456 | 397 | 247 | 13 | 7 | 376 | 4 | 386 | 2.31e-35 | 136 |
| Msa0691070 | AT3G49210.2 | 26.943 | 386 | 239 | 9 | 10 | 360 | 26 | 403 | 4.51e-35 | 135 |
| Msa0691070 | AT5G22490.2 | 25.964 | 389 | 242 | 13 | 11 | 373 | 12 | 380 | 4.75e-32 | 126 |
| Msa0691070 | AT5G37300.2 | 26.888 | 331 | 217 | 8 | 56 | 373 | 78 | 396 | 6.34e-31 | 124 |
| Msa0691070 | AT5G37300.3 | 31.111 | 225 | 141 | 6 | 56 | 275 | 78 | 293 | 3.73e-25 | 106 |
| Msa0691070 | AT2G38995.1 | 24.215 | 223 | 154 | 4 | 256 | 467 | 71 | 289 | 5.33e-14 | 72.8 |
Find 101 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATATCCTGACCTTAT+AGG | 0.131112 | 4_4:+59017976 | None:intergenic |
| TTTGGCTCCATATCAGATTT+TGG | 0.194143 | 4_4:-59018042 | Msa0691070:CDS |
| AATAGAGAAACTAGCATAAT+AGG | 0.205337 | 4_4:+59014057 | None:intergenic |
| TTGGCAAACCATCCAGTAAA+TGG | 0.227217 | 4_4:-59014885 | Msa0691070:CDS |
| CTATTACCACCACCTAATTA+TGG | 0.235827 | 4_4:-59014039 | Msa0691070:three_prime_UTR |
| TTCATATGTCTTTGCCTTCC+TGG | 0.237275 | 4_4:-59018742 | Msa0691070:CDS |
| CCAACCCTCTTGAGTTTGTT+TGG | 0.247573 | 4_4:-59015217 | Msa0691070:CDS |
| GAGGAGAAGCGTGGATTGAT+AGG | 0.274786 | 4_4:+59018660 | None:intergenic |
| AACCAGAGTGCAAAGGTCTT+TGG | 0.282055 | 4_4:-59015298 | Msa0691070:CDS |
| GGAATCTTTAAGTGCTCTTC+AGG | 0.284350 | 4_4:+59018408 | None:intergenic |
| ATGACTTAAAGTCCATAATT+AGG | 0.287806 | 4_4:+59014027 | None:intergenic |
| ACCAGAGTGCAAAGGTCTTT+GGG | 0.288027 | 4_4:-59015297 | Msa0691070:CDS |
| TGTAGCTTCGCTCATGGATT+TGG | 0.293368 | 4_4:-59015144 | Msa0691070:CDS |
| TCCACGCTTCTCCTCTATTA+TGG | 0.310743 | 4_4:-59018652 | Msa0691070:intron |
| GTGAAATACAATCCATTTAC+TGG | 0.318043 | 4_4:+59014873 | None:intergenic |
| GCTTGATCCAAAATCTGATA+TGG | 0.323604 | 4_4:+59018035 | None:intergenic |
| AATCGCCATGAAAACCAAAA+AGG | 0.323627 | 4_4:-59014199 | Msa0691070:CDS |
| ATACCTGATTGGCTTACTTT+AGG | 0.328784 | 4_4:+59015242 | None:intergenic |
| AAAATAATCTACAACACAAT+TGG | 0.333891 | 4_4:-59014960 | Msa0691070:CDS |
| GTTTGTGGAATGGTCTTCTA+TGG | 0.338920 | 4_4:-59015437 | Msa0691070:CDS |
| GAATGGTCTTCTATGGTATT+AGG | 0.354558 | 4_4:-59015430 | Msa0691070:CDS |
| ATGCTCAACACAAGAAATAT+TGG | 0.356933 | 4_4:-59015350 | Msa0691070:CDS |
| TTTGCATTTCCTTCACTGAT+TGG | 0.357490 | 4_4:+59015321 | None:intergenic |
| ATGATGAAGTTTGAATATTA+TGG | 0.365294 | 4_4:+59018230 | None:intergenic |
| GTCATGCAAGCCACTATGTT+TGG | 0.367375 | 4_4:-59014009 | Msa0691070:three_prime_UTR |
| GATTGGCTTACTTTAGGTAT+AGG | 0.368567 | 4_4:+59015248 | None:intergenic |
| AGCAATAACTATTGCATCAA+TGG | 0.392723 | 4_4:+59013958 | None:intergenic |
| GATATGGTTGACAAGGTAAC+AGG | 0.404187 | 4_4:+59017940 | None:intergenic |
| TTTATGGTTTCAGGAAATAT+GGG | 0.407052 | 4_4:+59018387 | None:intergenic |
| ACCACAAGACAAACCACTTT+GGG | 0.414710 | 4_4:-59018295 | Msa0691070:CDS |
| ACAAAGAGGGTAGGATGAAA+TGG | 0.425088 | 4_4:-59018449 | Msa0691070:CDS |
| CTACTATTTAAATTGTACTT+TGG | 0.426542 | 4_4:-59013937 | Msa0691070:three_prime_UTR |
| GTGCAAGCTGCATTGGTTGT+TGG | 0.426879 | 4_4:+59018252 | None:intergenic |
| TTGATCAAGTGATAGTGATA+TGG | 0.427100 | 4_4:+59017924 | None:intergenic |
| GCATACACACCACAACATAA+TGG | 0.428251 | 4_4:-59018835 | Msa0691070:exon |
| CAAATGGAATAGCTAATTCC+AGG | 0.437081 | 4_4:+59018724 | None:intergenic |
| CTTTCTCTTGATTAGTTCAC+GGG | 0.438535 | 4_4:+59015190 | None:intergenic |
| TGGTGATGGTTACTCTCTCA+TGG | 0.439804 | 4_4:-59018202 | Msa0691070:CDS |
| TGCAAGCTGCATTGGTTGTT+GGG | 0.441209 | 4_4:+59018253 | None:intergenic |
| ATAGAGAAACTAGCATAATA+GGG | 0.441271 | 4_4:+59014058 | None:intergenic |
| AAGATGACAAAACACCTATA+AGG | 0.442261 | 4_4:-59017990 | Msa0691070:CDS |
| CTATGGTATTAGGCTTTACA+TGG | 0.446543 | 4_4:-59015420 | Msa0691070:CDS |
| CCCCAAAGACCTTTGCACTC+TGG | 0.446961 | 4_4:+59015296 | None:intergenic |
| GATTTGGAGATGAGATTAAG+AGG | 0.447085 | 4_4:-59015128 | Msa0691070:CDS |
| ATACCTAAAGTAAGCCAATC+AGG | 0.448441 | 4_4:-59015245 | Msa0691070:CDS |
| AAATAATCTACAACACAATT+GGG | 0.449065 | 4_4:-59014959 | Msa0691070:CDS |
| TCTTTCTCTTGATTAGTTCA+CGG | 0.458319 | 4_4:+59015189 | None:intergenic |
| CTGGCTCTCGAACTTCTTCA+AGG | 0.460152 | 4_4:+59018805 | None:intergenic |
| CACCACAAGACAAACCACTT+TGG | 0.464218 | 4_4:-59018296 | Msa0691070:CDS |
| GGATTGTATTTCACAGCGAC+AGG | 0.474947 | 4_4:-59014864 | Msa0691070:CDS |
| TTCAAACTTCATCATGGACT+TGG | 0.476811 | 4_4:-59018222 | Msa0691070:CDS |
| AGGAGAAGCGTGGATTGATA+GGG | 0.479358 | 4_4:+59018661 | None:intergenic |
| ACTATAAACGATGTGGTTTG+TGG | 0.485396 | 4_4:-59015452 | Msa0691070:CDS |
| CCTATAAGGTCAGGATATGA+AGG | 0.491466 | 4_4:-59017976 | Msa0691070:CDS |
| TTATCTTGTAGCTTCGCTCA+TGG | 0.493491 | 4_4:-59015150 | Msa0691070:CDS |
| ATAGCTAATGAATTATCAAA+TGG | 0.494135 | 4_4:+59018708 | None:intergenic |
| GGAAAAGATAGAGGAAGAGA+AGG | 0.494447 | 4_4:+59018144 | None:intergenic |
| TATTGTCCATGTGGACTCAC+TGG | 0.498507 | 4_4:+59018786 | None:intergenic |
| AATATATAGAACCATAATAG+AGG | 0.500079 | 4_4:+59018641 | None:intergenic |
| TCCCAAAGTGGTTTGTCTTG+TGG | 0.504133 | 4_4:+59018294 | None:intergenic |
| TATTATGGTGCAAGCTGCAT+TGG | 0.522660 | 4_4:+59018245 | None:intergenic |
| GACAAAACACCTATAAGGTC+AGG | 0.527058 | 4_4:-59017985 | Msa0691070:CDS |
| ATTGAAAATGCCAAACATAG+TGG | 0.527913 | 4_4:+59013999 | None:intergenic |
| AATCATATTCAAAGCTGCTA+TGG | 0.528269 | 4_4:-59014127 | Msa0691070:CDS |
| GCATAATAGGGTGATGGCAA+TGG | 0.529822 | 4_4:+59014070 | None:intergenic |
| GAGGGTTGGAGATACCTGAT+TGG | 0.534115 | 4_4:+59015231 | None:intergenic |
| AATACAATCCATTTACTGGA+TGG | 0.534184 | 4_4:+59014877 | None:intergenic |
| CTTCATCATGGACTTGGTGA+TGG | 0.542615 | 4_4:-59018216 | Msa0691070:CDS |
| ATAACATGAATTTCCCAAAG+TGG | 0.544140 | 4_4:+59018282 | None:intergenic |
| GGGTAGGATGAAATGGCAAA+AGG | 0.556043 | 4_4:-59018442 | Msa0691070:CDS |
| AATAAAATCAAAACTCAAAG+TGG | 0.557314 | 4_4:-59017893 | Msa0691070:intron |
| GGTGATGGTTACTCTCTCAT+GGG | 0.557425 | 4_4:-59018201 | Msa0691070:CDS |
| ATAATATTCAAACTTCATCA+TGG | 0.563538 | 4_4:-59018228 | Msa0691070:CDS |
| CCAAACAAACTCAAGAGGGT+TGG | 0.570642 | 4_4:+59015217 | None:intergenic |
| CCAGAGTGCAAAGGTCTTTG+GGG | 0.576472 | 4_4:-59015296 | Msa0691070:CDS |
| AAACGATGTGGTTTGTGGAA+TGG | 0.576850 | 4_4:-59015447 | Msa0691070:CDS |
| CTCAACACAAGAAATATTGG+AGG | 0.579193 | 4_4:-59015347 | Msa0691070:CDS |
| AAACTAGCATAATAGGGTGA+TGG | 0.584421 | 4_4:+59014064 | None:intergenic |
| ATTACAGGTAAAAGACAAAG+AGG | 0.585818 | 4_4:-59018463 | Msa0691070:intron |
| TTGTATTTCACAGCGACAGG+TGG | 0.591285 | 4_4:-59014861 | Msa0691070:CDS |
| TAAAGTCCATAATTAGGTGG+TGG | 0.591671 | 4_4:+59014033 | None:intergenic |
| CGAGAGCCAGTGAGTCCACA+TGG | 0.604763 | 4_4:-59018792 | Msa0691070:CDS |
| ATGAAGACATCTTTGAGCAA+AGG | 0.607249 | 4_4:+59018684 | None:intergenic |
| GGAATTTGTCCATTATGTTG+TGG | 0.611791 | 4_4:+59018826 | None:intergenic |
| GAATTCCAAACAAACTCAAG+AGG | 0.614444 | 4_4:+59015212 | None:intergenic |
| TGATAGTGATATGGTTGACA+AGG | 0.623451 | 4_4:+59017933 | None:intergenic |
| AGGTAAAAGACAAAGAGGGT+AGG | 0.627880 | 4_4:-59018458 | Msa0691070:CDS |
| AAGAGCAAATTCCACAGCAG+TGG | 0.634903 | 4_4:-59015375 | Msa0691070:CDS |
| TGGAATAGCTAATTCCAGGA+AGG | 0.635155 | 4_4:+59018728 | None:intergenic |
| TGGAGGTTACCAATCAGTGA+AGG | 0.641441 | 4_4:-59015330 | Msa0691070:CDS |
| CAGAGTGCAAAGGTCTTTGG+GGG | 0.647099 | 4_4:-59015295 | Msa0691070:CDS |
| GTTCTTATGTCTAACCTCGT+AGG | 0.647799 | 4_4:-59014927 | Msa0691070:CDS |
| CACAGCGACAGGTGGACCTG+AGG | 0.647966 | 4_4:-59014853 | Msa0691070:intron |
| AATTCCAAACAAACTCAAGA+GGG | 0.648821 | 4_4:+59015213 | None:intergenic |
| GTTGAGCATTACCACTGCTG+TGG | 0.649328 | 4_4:+59015364 | None:intergenic |
| GTTGCAGACTATAAACGATG+TGG | 0.656901 | 4_4:-59015459 | Msa0691070:intron |
| GATGAGATTAAGAGGACCTG+AGG | 0.656997 | 4_4:-59015120 | Msa0691070:intron |
| ACTTAAAGTCCATAATTAGG+TGG | 0.667564 | 4_4:+59014030 | None:intergenic |
| TTACAGGTAAAAGACAAAGA+GGG | 0.674677 | 4_4:-59018462 | Msa0691070:intron |
| ACCATAATAGAGGAGAAGCG+TGG | 0.686651 | 4_4:+59018651 | None:intergenic |
| CTGTTGAAATATTGTCCATG+TGG | 0.714984 | 4_4:+59018777 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAATTAAAATTTGGT+AGG | + | chr4_4:59014188-59014207 | None:intergenic | 10.0% |
| !!! | ACCAAATTTTAATTAATATA+AGG | - | chr4_4:59014188-59014207 | Msa0691070:CDS | 10.0% |
| !!! | AAAAAATAGATTTTTTTTAG+AGG | - | chr4_4:59015135-59015154 | Msa0691070:CDS | 10.0% |
| !!! | CAAATTTTGTTAATTTTTTT+GGG | + | chr4_4:59015381-59015400 | None:intergenic | 10.0% |
| !!! | TCAAATTTTGTTAATTTTTT+TGG | + | chr4_4:59015382-59015401 | None:intergenic | 10.0% |
| !!! | AAATTAACAAAATTTGATTT+TGG | - | chr4_4:59015385-59015404 | Msa0691070:CDS | 10.0% |
| !! | ATATATATATATATATAGTC+AGG | + | chr4_4:59016397-59016416 | None:intergenic | 10.0% |
| !! | TAGTATAAATATAGATATAA+AGG | - | chr4_4:59016472-59016491 | Msa0691070:intron | 10.0% |
| !! | AGTATAAATATAGATATAAA+GGG | - | chr4_4:59016473-59016492 | Msa0691070:intron | 10.0% |
| !!! | AAAGTTTATTTTTATTAACA+AGG | - | chr4_4:59016915-59016934 | Msa0691070:intron | 10.0% |
| !!! | AAGTTTATTTTTATTAACAA+GGG | - | chr4_4:59016916-59016935 | Msa0691070:intron | 10.0% |
| !!! | AAAAAAAACATCAAAATTTT+AGG | + | chr4_4:59017705-59017724 | None:intergenic | 10.0% |
| !! | GCCTTATATTAATTAAAATT+TGG | + | chr4_4:59014192-59014211 | None:intergenic | 15.0% |
| !!! | TTAATTAATATAAGGCATTA+AGG | - | chr4_4:59014196-59014215 | Msa0691070:CDS | 15.0% |
| !! | ATTCTAATACTATTAATTAC+AGG | - | chr4_4:59014292-59014311 | Msa0691070:intron | 15.0% |
| !!! | TTTTAAAAATCTGTAACAAA+CGG | + | chr4_4:59015051-59015070 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGATTTTTGTTA+CGG | - | chr4_4:59015250-59015269 | Msa0691070:CDS | 15.0% |
| !!! | CATAAACTATTTTTATAAAG+AGG | - | chr4_4:59015726-59015745 | Msa0691070:intron | 15.0% |
| !! | TTATAGAAAAAGTTGTTTAA+AGG | - | chr4_4:59016092-59016111 | Msa0691070:intron | 15.0% |
| !! | TAAATAAGATCAAAATCTAA+GGG | + | chr4_4:59016652-59016671 | None:intergenic | 15.0% |
| !! | ATAAATAAGATCAAAATCTA+AGG | + | chr4_4:59016653-59016672 | None:intergenic | 15.0% |
| !! | TTATACAAAAAGTTATACAT+TGG | - | chr4_4:59017250-59017269 | Msa0691070:intron | 15.0% |
| !! | ATTAAGTTTGATTAACTAAT+TGG | - | chr4_4:59017273-59017292 | Msa0691070:intron | 15.0% |
| !!! | ATTAATGTTCTCTATTTTAT+TGG | - | chr4_4:59017765-59017784 | Msa0691070:intron | 15.0% |
| !!! | TTAATGTTCTCTATTTTATT+GGG | - | chr4_4:59017766-59017785 | Msa0691070:intron | 15.0% |
| !! | TCACAATTGTATATATTTAT+TGG | - | chr4_4:59018378-59018397 | Msa0691070:CDS | 15.0% |
| !! | ATAGCTAATGAATTATCAAA+TGG | + | chr4_4:59014065-59014084 | None:intergenic | 20.0% |
| !! | AATATATAGAACCATAATAG+AGG | + | chr4_4:59014132-59014151 | None:intergenic | 20.0% |
| !! | GTAAAGTAATTAATGAAGTA+TGG | + | chr4_4:59014159-59014178 | None:intergenic | 20.0% |
| !!! | TAAAAGGTCAATTTTGATTA+AGG | + | chr4_4:59014254-59014273 | None:intergenic | 20.0% |
| !! | ATGATGAAGTTTGAATATTA+TGG | + | chr4_4:59014543-59014562 | None:intergenic | 20.0% |
| !! | ATAATATTCAAACTTCATCA+TGG | - | chr4_4:59014542-59014561 | Msa0691070:intron | 20.0% |
| !! | AATAAAATCAAAACTCAAAG+TGG | - | chr4_4:59014877-59014896 | Msa0691070:CDS | 20.0% |
| !! | TTAAAAAAGCTATAACAAAC+GGG | + | chr4_4:59014978-59014997 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGCTATAACAAA+CGG | + | chr4_4:59014979-59014998 | None:intergenic | 20.0% |
| !! | TTGGATACAACTATATAAAA+GGG | + | chr4_4:59015210-59015229 | None:intergenic | 20.0% |
| !! | TTTGGATACAACTATATAAA+AGG | + | chr4_4:59015211-59015230 | None:intergenic | 20.0% |
| !!! | AACAAATAATCTAGTTTGTT+TGG | + | chr4_4:59015229-59015248 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | - | chr4_4:59015354-59015373 | Msa0691070:CDS | 20.0% |
| !! | TACAAGTCTTACTAAAAAAA+CGG | - | chr4_4:59015470-59015489 | Msa0691070:intron | 20.0% |
| !! | TACAAGTCTTACTAAAAAAA+CGG | - | chr4_4:59015470-59015489 | Msa0691070:intron | 20.0% |
| !!! | AAGTTGTTTAAAGGTATAAT+TGG | - | chr4_4:59016101-59016120 | Msa0691070:intron | 20.0% |
| !!! | AGTTGTTTAAAGGTATAATT+GGG | - | chr4_4:59016102-59016121 | Msa0691070:intron | 20.0% |
| !! | ATTGGATTGAATAGTTATAA+CGG | - | chr4_4:59016324-59016343 | Msa0691070:intron | 20.0% |
| !!! | AACTTGCTAAAACATTTATA+AGG | + | chr4_4:59016541-59016560 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | - | chr4_4:59016738-59016757 | Msa0691070:intron | 20.0% |
| !! | TAATTAACAAAACTTGATTC+TGG | + | chr4_4:59017183-59017202 | None:intergenic | 20.0% |
| !! | ATAATCCAATGATATGATTA+CGG | + | chr4_4:59017231-59017250 | None:intergenic | 20.0% |
| !! | AAAATAATCTACAACACAAT+TGG | - | chr4_4:59017810-59017829 | Msa0691070:intron | 20.0% |
| !! | AAATAATCTACAACACAATT+GGG | - | chr4_4:59017811-59017830 | Msa0691070:intron | 20.0% |
| !! | ATATAAATAAAATTCACCAC+TGG | - | chr4_4:59018069-59018088 | Msa0691070:CDS | 20.0% |
| !! | TTATAGAATTCAAAATCTCA+TGG | + | chr4_4:59018213-59018232 | None:intergenic | 20.0% |
| !! | ATACATTCTATGTGTTTATA+AGG | + | chr4_4:59018333-59018352 | None:intergenic | 20.0% |
| !! | CTACTATTTAAATTGTACTT+TGG | - | chr4_4:59018833-59018852 | Msa0691070:exon | 20.0% |
| ! | TTTATGGTTTCAGGAAATAT+GGG | + | chr4_4:59014386-59014405 | None:intergenic | 25.0% |
| !! | TTTTATGGTTTCAGGAAATA+TGG | + | chr4_4:59014387-59014406 | None:intergenic | 25.0% |
| !!! | TTCACATGATGATGTTTTTA+TGG | + | chr4_4:59014402-59014421 | None:intergenic | 25.0% |
| !!! | GCATATTTTGAATCTAATTG+TGG | + | chr4_4:59014662-59014681 | None:intergenic | 25.0% |
| !!! | TTAGATATCTCATCCTTTTT+TGG | - | chr4_4:59014710-59014729 | Msa0691070:intron | 25.0% |
| !!! | TATTTTAATCCGTAACAAAC+GGG | - | chr4_4:59015355-59015374 | Msa0691070:CDS | 25.0% |
| !!! | AACAAAATTTGATTTTGGTG+AGG | - | chr4_4:59015390-59015409 | Msa0691070:CDS | 25.0% |
| !!! | TCAACTATCCTATTTTTATG+TGG | - | chr4_4:59015508-59015527 | Msa0691070:intron | 25.0% |
| !!! | TCAACTATCCTATTTTTATG+TGG | - | chr4_4:59015508-59015527 | Msa0691070:intron | 25.0% |
| ! | CTATAAAATAATAGCGAAGA+CGG | - | chr4_4:59015753-59015772 | Msa0691070:intron | 25.0% |
| ! | TATAAAATAATAGCGAAGAC+GGG | - | chr4_4:59015754-59015773 | Msa0691070:intron | 25.0% |
| ! | GTCATTGAAATAGATAATCA+TGG | + | chr4_4:59015931-59015950 | None:intergenic | 25.0% |
| !!! | GACACAAACATTTTTTTTGA+AGG | - | chr4_4:59016016-59016035 | Msa0691070:intron | 25.0% |
| ! | GTATAATTGGGATAATGAAA+AGG | - | chr4_4:59016114-59016133 | Msa0691070:intron | 25.0% |
| ! | GTTATAACTATTCAATCCAA+TGG | + | chr4_4:59016325-59016344 | None:intergenic | 25.0% |
| !! | ATGATCCTTCAAATATTTTC+TGG | - | chr4_4:59016561-59016580 | Msa0691070:intron | 25.0% |
| !! | TGATCCTTCAAATATTTTCT+GGG | - | chr4_4:59016562-59016581 | Msa0691070:intron | 25.0% |
| !! | TTTTCCCAGAAAATATTTGA+AGG | + | chr4_4:59016569-59016588 | None:intergenic | 25.0% |
| ! | AAAATGCTAGATATCAAGAA+TGG | - | chr4_4:59016585-59016604 | Msa0691070:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | - | chr4_4:59016739-59016758 | Msa0691070:intron | 25.0% |
| ! | TAATCCAATGATATGATTAC+GGG | + | chr4_4:59017230-59017249 | None:intergenic | 25.0% |
| !!! | TAACACTAGTGTTTTTAATC+CGG | - | chr4_4:59017990-59018009 | Msa0691070:CDS | 25.0% |
| ! | CTTAATCATATGTCTAAATC+GGG | + | chr4_4:59018021-59018040 | None:intergenic | 25.0% |
| ! | CCTTAATCATATGTCTAAAT+CGG | + | chr4_4:59018022-59018041 | None:intergenic | 25.0% |
| ! | GTATAGAAGGAATATCTTAA+TGG | - | chr4_4:59018095-59018114 | Msa0691070:CDS | 25.0% |
| ! | TCTGAACACCAAAAAAAAAA+AGG | - | chr4_4:59018300-59018319 | Msa0691070:CDS | 25.0% |
| ! | CTGAACACCAAAAAAAAAAA+GGG | - | chr4_4:59018301-59018320 | Msa0691070:CDS | 25.0% |
| !! | ATATGGAAGTGTATTATGTA+TGG | + | chr4_4:59018428-59018447 | None:intergenic | 25.0% |
| ! | ATAGAGAAACTAGCATAATA+GGG | + | chr4_4:59018715-59018734 | None:intergenic | 25.0% |
| ! | AATAGAGAAACTAGCATAAT+AGG | + | chr4_4:59018716-59018735 | None:intergenic | 25.0% |
| ! | ATGACTTAAAGTCCATAATT+AGG | + | chr4_4:59018746-59018765 | None:intergenic | 25.0% |
| !!! | AAGGTCAATTTTGATTAAGG+AGG | + | chr4_4:59014251-59014270 | None:intergenic | 30.0% |
| ATTACAGGTAAAAGACAAAG+AGG | - | chr4_4:59014307-59014326 | Msa0691070:intron | 30.0% | |
| TTACAGGTAAAAGACAAAGA+GGG | - | chr4_4:59014308-59014327 | Msa0691070:intron | 30.0% | |
| !! | GATGATGTTTTTATGGTTTC+AGG | + | chr4_4:59014395-59014414 | None:intergenic | 30.0% |
| ATAACATGAATTTCCCAAAG+TGG | + | chr4_4:59014491-59014510 | None:intergenic | 30.0% | |
| !! | CTTTTTGAAGGAAAAGATAG+AGG | + | chr4_4:59014638-59014657 | None:intergenic | 30.0% |
| ! | TCTAATTGTGGTCTTTTTGA+AGG | + | chr4_4:59014650-59014669 | None:intergenic | 30.0% |
| AAGATGACAAAACACCTATA+AGG | - | chr4_4:59014780-59014799 | Msa0691070:intron | 30.0% | |
| ! | TTGATCAAGTGATAGTGATA+TGG | + | chr4_4:59014849-59014868 | None:intergenic | 30.0% |
| !! | AAAGTCTGTGTTTTTACTCT+TGG | - | chr4_4:59015447-59015466 | Msa0691070:CDS | 30.0% |
| !!! | TCCTATTTTTATGTGGTTCA+TGG | - | chr4_4:59015515-59015534 | Msa0691070:intron | 30.0% |
| !!! | CCTATTTTTATGTGGTTCAT+GGG | - | chr4_4:59015516-59015535 | Msa0691070:intron | 30.0% |
| !!! | CTATTTTTATGTGGTTCATG+GGG | - | chr4_4:59015517-59015536 | Msa0691070:intron | 30.0% |
| !! | AAAGTCTGTGTTTTTACTCT+TGG | - | chr4_4:59015447-59015466 | Msa0691070:CDS | 30.0% |
| !!! | TCCTATTTTTATGTGGTTCA+TGG | - | chr4_4:59015515-59015534 | Msa0691070:intron | 30.0% |
| !!! | CCTATTTTTATGTGGTTCAT+GGG | - | chr4_4:59015516-59015535 | Msa0691070:intron | 30.0% |
| !!! | CTATTTTTATGTGGTTCATG+GGG | - | chr4_4:59015517-59015536 | Msa0691070:intron | 30.0% |
| CAATATAAAGAGCGGAAAAA+CGG | + | chr4_4:59015791-59015810 | None:intergenic | 30.0% | |
| ATAGATAATCATGGTTCGTT+TGG | + | chr4_4:59015922-59015941 | None:intergenic | 30.0% | |
| TATATATGTGTGTGTGTATG+TGG | + | chr4_4:59016198-59016217 | None:intergenic | 30.0% | |
| ACACACACATATATATAGTC+AGG | - | chr4_4:59016203-59016222 | Msa0691070:intron | 30.0% | |
| TAGTTATAACGGCTTAGATT+TGG | - | chr4_4:59016335-59016354 | Msa0691070:intron | 30.0% | |
| !!! | TAAGTTTTTTGACTTACACC+TGG | - | chr4_4:59016360-59016379 | Msa0691070:intron | 30.0% |
| ! | TAAATTTTCCTTTGCAATCG+TGG | - | chr4_4:59016864-59016883 | Msa0691070:intron | 30.0% |
| TTAACCCGTAATCATATCAT+TGG | - | chr4_4:59017223-59017242 | Msa0691070:intron | 30.0% | |
| ATGCTCAACACAAGAAATAT+TGG | - | chr4_4:59017420-59017439 | Msa0691070:intron | 30.0% | |
| AATTCCAAACAAACTCAAGA+GGG | + | chr4_4:59017560-59017579 | None:intergenic | 30.0% | |
| ! | TCTTTCTCTTGATTAGTTCA+CGG | + | chr4_4:59017584-59017603 | None:intergenic | 30.0% |
| ! | TTTTATTGGGTTTGTGTTTC+AGG | - | chr4_4:59017779-59017798 | Msa0691070:intron | 30.0% |
| AATACAATCCATTTACTGGA+TGG | + | chr4_4:59017896-59017915 | None:intergenic | 30.0% | |
| GTGAAATACAATCCATTTAC+TGG | + | chr4_4:59017900-59017919 | None:intergenic | 30.0% | |
| ! | TAGTGTTATTAAATCCACTC+TGG | + | chr4_4:59017978-59017997 | None:intergenic | 30.0% |
| !! | AACACTAGTGTTTTTAATCC+GGG | - | chr4_4:59017991-59018010 | Msa0691070:CDS | 30.0% |
| CCGATTTAGACATATGATTA+AGG | - | chr4_4:59018019-59018038 | Msa0691070:CDS | 30.0% | |
| AAATAAAATTCACCACTGGT+AGG | - | chr4_4:59018073-59018092 | Msa0691070:CDS | 30.0% | |
| ATACACTTCCATATCTACTT+TGG | - | chr4_4:59018434-59018453 | Msa0691070:CDS | 30.0% | |
| ATATCCAACCAAAGTAGATA+TGG | + | chr4_4:59018445-59018464 | None:intergenic | 30.0% | |
| AATCATATTCAAAGCTGCTA+TGG | - | chr4_4:59018643-59018662 | Msa0691070:intron | 30.0% | |
| ACTTAAAGTCCATAATTAGG+TGG | + | chr4_4:59018743-59018762 | None:intergenic | 30.0% | |
| ATTGAAAATGCCAAACATAG+TGG | + | chr4_4:59018774-59018793 | None:intergenic | 30.0% | |
| AGCAATAACTATTGCATCAA+TGG | + | chr4_4:59018815-59018834 | None:intergenic | 30.0% | |
| GGAATTTGTCCATTATGTTG+TGG | + | chr4_4:59013947-59013966 | None:intergenic | 35.0% | |
| CTGTTGAAATATTGTCCATG+TGG | + | chr4_4:59013996-59014015 | None:intergenic | 35.0% | |
| CAAATGGAATAGCTAATTCC+AGG | + | chr4_4:59014049-59014068 | None:intergenic | 35.0% | |
| ATGAAGACATCTTTGAGCAA+AGG | + | chr4_4:59014089-59014108 | None:intergenic | 35.0% | |
| TTCAAACTTCATCATGGACT+TGG | - | chr4_4:59014548-59014567 | Msa0691070:intron | 35.0% | |
| ATCTGATATGGAGCCAAAAA+AGG | + | chr4_4:59014726-59014745 | None:intergenic | 35.0% | |
| !! | TTTGGCTCCATATCAGATTT+TGG | - | chr4_4:59014728-59014747 | Msa0691070:intron | 35.0% |
| GCTTGATCCAAAATCTGATA+TGG | + | chr4_4:59014738-59014757 | None:intergenic | 35.0% | |
| ! | TGATAGTGATATGGTTGACA+AGG | + | chr4_4:59014840-59014859 | None:intergenic | 35.0% |
| CCCATGAACCACATAAAAAT+AGG | + | chr4_4:59015519-59015538 | None:intergenic | 35.0% | |
| CCCATGAACCACATAAAAAT+AGG | + | chr4_4:59015519-59015538 | None:intergenic | 35.0% | |
| ATAATCATGGTTCGTTTGGT+TGG | + | chr4_4:59015918-59015937 | None:intergenic | 35.0% | |
| TAAGTCTTTCGACTTACATC+TGG | + | chr4_4:59016240-59016259 | None:intergenic | 35.0% | |
| CCATGTGGTCAATTTATACA+GGG | + | chr4_4:59016277-59016296 | None:intergenic | 35.0% | |
| ACCATGTGGTCAATTTATAC+AGG | + | chr4_4:59016278-59016297 | None:intergenic | 35.0% | |
| !!! | ACCACATGGTCTATTTTTGT+TGG | - | chr4_4:59016288-59016307 | Msa0691070:intron | 35.0% |
| !!! | CCACATGGTCTATTTTTGTT+GGG | - | chr4_4:59016289-59016308 | Msa0691070:intron | 35.0% |
| TAGCCAATAAAATCTCAGCT+TGG | + | chr4_4:59016728-59016747 | None:intergenic | 35.0% | |
| ! | TTCCATCACGATTTTTGTCA+CGG | + | chr4_4:59017134-59017153 | None:intergenic | 35.0% |
| ACTATAAACGATGTGGTTTG+TGG | - | chr4_4:59017318-59017337 | Msa0691070:intron | 35.0% | |
| GAATGGTCTTCTATGGTATT+AGG | - | chr4_4:59017340-59017359 | Msa0691070:intron | 35.0% | |
| CTATGGTATTAGGCTTTACA+TGG | - | chr4_4:59017350-59017369 | Msa0691070:intron | 35.0% | |
| CTCAACACAAGAAATATTGG+AGG | - | chr4_4:59017423-59017442 | Msa0691070:intron | 35.0% | |
| TTTGCATTTCCTTCACTGAT+TGG | + | chr4_4:59017452-59017471 | None:intergenic | 35.0% | |
| !! | GATTGGCTTACTTTAGGTAT+AGG | + | chr4_4:59017525-59017544 | None:intergenic | 35.0% |
| ATACCTAAAGTAAGCCAATC+AGG | - | chr4_4:59017525-59017544 | Msa0691070:intron | 35.0% | |
| !! | ATACCTGATTGGCTTACTTT+AGG | + | chr4_4:59017531-59017550 | None:intergenic | 35.0% |
| GAATTCCAAACAAACTCAAG+AGG | + | chr4_4:59017561-59017580 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTGATTAGTTCAC+GGG | + | chr4_4:59017583-59017602 | None:intergenic | 35.0% |
| GATTTGGAGATGAGATTAAG+AGG | - | chr4_4:59017642-59017661 | Msa0691070:intron | 35.0% | |
| ACAAAATACATGCATACCTC+AGG | + | chr4_4:59017936-59017955 | None:intergenic | 35.0% | |
| CATATTTGAATTGACCAGAG+TGG | - | chr4_4:59017961-59017980 | Msa0691070:CDS | 35.0% | |
| !! | ACACTAGTGTTTTTAATCCG+GGG | - | chr4_4:59017992-59018011 | Msa0691070:CDS | 35.0% |
| AAAAAATAGGGTGTGAGAGA+AGG | + | chr4_4:59018170-59018189 | None:intergenic | 35.0% | |
| ! | ATTTTTCCACCCTAAAACAG+GGG | + | chr4_4:59018252-59018271 | None:intergenic | 35.0% |
| ! | CATTTTTCCACCCTAAAACA+GGG | + | chr4_4:59018253-59018272 | None:intergenic | 35.0% |
| !! | TCATTTTTCCACCCTAAAAC+AGG | + | chr4_4:59018254-59018273 | None:intergenic | 35.0% |
| !!! | GAACACGCCCTTTTTTTTTT+TGG | + | chr4_4:59018311-59018330 | None:intergenic | 35.0% |
| GAAGTGTATTATGTATGGTG+TGG | + | chr4_4:59018423-59018442 | None:intergenic | 35.0% | |
| ACTTCCATATCTACTTTGGT+TGG | - | chr4_4:59018438-59018457 | Msa0691070:CDS | 35.0% | |
| CTTTAATTACCTCTTGTGTG+TGG | - | chr4_4:59018501-59018520 | Msa0691070:intron | 35.0% | |
| AATCGCCATGAAAACCAAAA+AGG | - | chr4_4:59018571-59018590 | Msa0691070:intron | 35.0% | |
| ATCGCCATGAAAACCAAAAA+GGG | - | chr4_4:59018572-59018591 | Msa0691070:intron | 35.0% | |
| ! | TTCATCTATGAACCCCTTTT+TGG | + | chr4_4:59018588-59018607 | None:intergenic | 35.0% |
| AAACTAGCATAATAGGGTGA+TGG | + | chr4_4:59018709-59018728 | None:intergenic | 35.0% | |
| CTATTACCACCACCTAATTA+TGG | - | chr4_4:59018731-59018750 | Msa0691070:CDS | 35.0% | |
| TAAAGTCCATAATTAGGTGG+TGG | + | chr4_4:59018740-59018759 | None:intergenic | 35.0% | |
| TTCATATGTCTTTGCCTTCC+TGG | - | chr4_4:59014028-59014047 | Msa0691070:three_prime_UTR | 40.0% | |
| TGGAATAGCTAATTCCAGGA+AGG | + | chr4_4:59014045-59014064 | None:intergenic | 40.0% | |
| AGGTAAAAGACAAAGAGGGT+AGG | - | chr4_4:59014312-59014331 | Msa0691070:intron | 40.0% | |
| ACAAAGAGGGTAGGATGAAA+TGG | - | chr4_4:59014321-59014340 | Msa0691070:intron | 40.0% | |
| GGAATCTTTAAGTGCTCTTC+AGG | + | chr4_4:59014365-59014384 | None:intergenic | 40.0% | |
| ACCACAAGACAAACCACTTT+GGG | - | chr4_4:59014475-59014494 | Msa0691070:intron | 40.0% | |
| TATTATGGTGCAAGCTGCAT+TGG | + | chr4_4:59014528-59014547 | None:intergenic | 40.0% | |
| GGAAAAGATAGAGGAAGAGA+AGG | + | chr4_4:59014629-59014648 | None:intergenic | 40.0% | |
| GACAAAACACCTATAAGGTC+AGG | - | chr4_4:59014785-59014804 | Msa0691070:intron | 40.0% | |
| CCTTCATATCCTGACCTTAT+AGG | + | chr4_4:59014797-59014816 | None:intergenic | 40.0% | |
| CCTATAAGGTCAGGATATGA+AGG | - | chr4_4:59014794-59014813 | Msa0691070:intron | 40.0% | |
| GATATGGTTGACAAGGTAAC+AGG | + | chr4_4:59014833-59014852 | None:intergenic | 40.0% | |
| !!! | TTTTTTGGGCCCGTTTGTTA+CGG | + | chr4_4:59015367-59015386 | None:intergenic | 40.0% |
| CGTTAGCGCAATATAAAGAG+CGG | + | chr4_4:59015799-59015818 | None:intergenic | 40.0% | |
| GTGGTCAATTTATACAGGGT+TGG | + | chr4_4:59016273-59016292 | None:intergenic | 40.0% | |
| CCCTGTATAAATTGACCACA+TGG | - | chr4_4:59016274-59016293 | Msa0691070:intron | 40.0% | |
| CCCAACAAAAATAGACCATG+TGG | + | chr4_4:59016292-59016311 | None:intergenic | 40.0% | |
| GTTGGGATATTCTTAGCCAT+TGG | - | chr4_4:59016306-59016325 | Msa0691070:intron | 40.0% | |
| CAATAAAATCTCAGCTTGGC+CGG | + | chr4_4:59016724-59016743 | None:intergenic | 40.0% | |
| TGTACTAACCACGATTGCAA+AGG | + | chr4_4:59016875-59016894 | None:intergenic | 40.0% | |
| AACCGTGACAAAAATCGTGA+TGG | - | chr4_4:59017129-59017148 | Msa0691070:intron | 40.0% | |
| GTTGCAGACTATAAACGATG+TGG | - | chr4_4:59017311-59017330 | Msa0691070:intron | 40.0% | |
| ! | AAACGATGTGGTTTGTGGAA+TGG | - | chr4_4:59017323-59017342 | Msa0691070:intron | 40.0% |
| GTTTGTGGAATGGTCTTCTA+TGG | - | chr4_4:59017333-59017352 | Msa0691070:intron | 40.0% | |
| ATGCAAAAACCAGAGTGCAA+AGG | - | chr4_4:59017465-59017484 | Msa0691070:intron | 40.0% | |
| TTATCTTGTAGCTTCGCTCA+TGG | - | chr4_4:59017620-59017639 | Msa0691070:intron | 40.0% | |
| ATTAATGTGTGACACACCTC+AGG | + | chr4_4:59017669-59017688 | None:intergenic | 40.0% | |
| GTTCTTATGTCTAACCTCGT+AGG | - | chr4_4:59017843-59017862 | Msa0691070:intron | 40.0% | |
| ACCGCTAGAAAAAATGGCTT+TGG | - | chr4_4:59017866-59017885 | Msa0691070:intron | 40.0% | |
| !!! | GCCAAAGCCATTTTTTCTAG+CGG | + | chr4_4:59017870-59017889 | None:intergenic | 40.0% |
| TTGGCAAACCATCCAGTAAA+TGG | - | chr4_4:59017885-59017904 | Msa0691070:intron | 40.0% | |
| ATTCCTTCTATACCTACCAG+TGG | + | chr4_4:59018088-59018107 | None:intergenic | 40.0% | |
| ! | ATGAGTTTTCCCCCTGTTTT+AGG | - | chr4_4:59018239-59018258 | Msa0691070:CDS | 40.0% |
| ! | TGAGTTTTCCCCCTGTTTTA+GGG | - | chr4_4:59018240-59018259 | Msa0691070:CDS | 40.0% |
| ! | TTTTTCCACCCTAAAACAGG+GGG | + | chr4_4:59018251-59018270 | None:intergenic | 40.0% |
| TCGCCATGAAAACCAAAAAG+GGG | - | chr4_4:59018573-59018592 | Msa0691070:intron | 40.0% | |
| !!! | GAACCCCTTTTTGGTTTTCA+TGG | + | chr4_4:59018579-59018598 | None:intergenic | 40.0% |
| TATTGTCCATGTGGACTCAC+TGG | + | chr4_4:59013987-59014006 | None:intergenic | 45.0% | |
| ! | AGGAGAAGCGTGGATTGATA+GGG | + | chr4_4:59014112-59014131 | None:intergenic | 45.0% |
| TCCACGCTTCTCCTCTATTA+TGG | - | chr4_4:59014118-59014137 | Msa0691070:exon | 45.0% | |
| ACCATAATAGAGGAGAAGCG+TGG | + | chr4_4:59014122-59014141 | None:intergenic | 45.0% | |
| GGGTAGGATGAAATGGCAAA+AGG | - | chr4_4:59014328-59014347 | Msa0691070:intron | 45.0% | |
| CACCACAAGACAAACCACTT+TGG | - | chr4_4:59014474-59014493 | Msa0691070:intron | 45.0% | |
| ! | TCCCAAAGTGGTTTGTCTTG+TGG | + | chr4_4:59014479-59014498 | None:intergenic | 45.0% |
| !! | TGCAAGCTGCATTGGTTGTT+GGG | + | chr4_4:59014520-59014539 | None:intergenic | 45.0% |
| !! | CTTCATCATGGACTTGGTGA+TGG | - | chr4_4:59014554-59014573 | Msa0691070:intron | 45.0% |
| !! | TGGTGATGGTTACTCTCTCA+TGG | - | chr4_4:59014568-59014587 | Msa0691070:intron | 45.0% |
| ! | GGTGATGGTTACTCTCTCAT+GGG | - | chr4_4:59014569-59014588 | Msa0691070:intron | 45.0% |
| ! | CGACTTACATCTGGTGTCAA+CGG | + | chr4_4:59016231-59016250 | None:intergenic | 45.0% |
| ! | TGACTTACACCTGGTGTCAA+CGG | - | chr4_4:59016369-59016388 | Msa0691070:intron | 45.0% |
| ! | CGGCCAAGCTGAGATTTTAT+TGG | - | chr4_4:59016722-59016741 | Msa0691070:intron | 45.0% |
| AAGAGCAAATTCCACAGCAG+TGG | - | chr4_4:59017395-59017414 | Msa0691070:intron | 45.0% | |
| TGGAGGTTACCAATCAGTGA+AGG | - | chr4_4:59017440-59017459 | Msa0691070:intron | 45.0% | |
| AACCAGAGTGCAAAGGTCTT+TGG | - | chr4_4:59017472-59017491 | Msa0691070:intron | 45.0% | |
| ACCAGAGTGCAAAGGTCTTT+GGG | - | chr4_4:59017473-59017492 | Msa0691070:intron | 45.0% | |
| CCAAACAAACTCAAGAGGGT+TGG | + | chr4_4:59017556-59017575 | None:intergenic | 45.0% | |
| ! | CCAACCCTCTTGAGTTTGTT+TGG | - | chr4_4:59017553-59017572 | Msa0691070:intron | 45.0% |
| TGTAGCTTCGCTCATGGATT+TGG | - | chr4_4:59017626-59017645 | Msa0691070:intron | 45.0% | |
| GATGAGATTAAGAGGACCTG+AGG | - | chr4_4:59017650-59017669 | Msa0691070:intron | 45.0% | |
| !!! | TTTTTTCTAGCGGTCCTACG+AGG | + | chr4_4:59017860-59017879 | None:intergenic | 45.0% |
| CGTAGGACCGCTAGAAAAAA+TGG | - | chr4_4:59017860-59017879 | Msa0691070:intron | 45.0% | |
| GGATTGTATTTCACAGCGAC+AGG | - | chr4_4:59017906-59017925 | Msa0691070:CDS | 45.0% | |
| TTGTATTTCACAGCGACAGG+TGG | - | chr4_4:59017909-59017928 | Msa0691070:CDS | 45.0% | |
| TCACCACTGGTAGGTATAGA+AGG | - | chr4_4:59018082-59018101 | Msa0691070:CDS | 45.0% | |
| TGTGAGAGAAGGTCATAAGG+TGG | + | chr4_4:59018159-59018178 | None:intergenic | 45.0% | |
| ! | GCATAATAGGGTGATGGCAA+TGG | + | chr4_4:59018703-59018722 | None:intergenic | 45.0% |
| GTCATGCAAGCCACTATGTT+TGG | - | chr4_4:59018761-59018780 | Msa0691070:CDS | 45.0% | |
| !! | AAATAATTAATGATAATAAA+AGG | + | chr4_4:59014270-59014289 | None:intergenic | 5.0% |
| !!! | ATAATTTAATTTTTTTTTGA+AGG | - | chr4_4:59015960-59015979 | Msa0691070:intron | 5.0% |
| !! | TAAAGAAAAATAAAAAAATA+GGG | + | chr4_4:59018182-59018201 | None:intergenic | 5.0% |
| !! | TTAAAGAAAAATAAAAAAAT+AGG | + | chr4_4:59018183-59018202 | None:intergenic | 5.0% |
| ! | CTGGCTCTCGAACTTCTTCA+AGG | + | chr4_4:59013968-59013987 | None:intergenic | 50.0% |
| ! | GAGGAGAAGCGTGGATTGAT+AGG | + | chr4_4:59014113-59014132 | None:intergenic | 50.0% |
| !! | GTGCAAGCTGCATTGGTTGT+TGG | + | chr4_4:59014521-59014540 | None:intergenic | 50.0% |
| ACCCACCACCCTATGATTTC+CGG | - | chr4_4:59016702-59016721 | Msa0691070:intron | 50.0% | |
| CAGCTTGGCCGGAAATCATA+GGG | + | chr4_4:59016713-59016732 | None:intergenic | 50.0% | |
| TCAGCTTGGCCGGAAATCAT+AGG | + | chr4_4:59016714-59016733 | None:intergenic | 50.0% | |
| GTTGAGCATTACCACTGCTG+TGG | + | chr4_4:59017409-59017428 | None:intergenic | 50.0% | |
| CCAGAGTGCAAAGGTCTTTG+GGG | - | chr4_4:59017474-59017493 | Msa0691070:intron | 50.0% | |
| CAGAGTGCAAAGGTCTTTGG+GGG | - | chr4_4:59017475-59017494 | Msa0691070:intron | 50.0% | |
| GAGGGTTGGAGATACCTGAT+TGG | + | chr4_4:59017542-59017561 | None:intergenic | 50.0% | |
| ATGTCTAAATCGGGCAACCC+CGG | + | chr4_4:59018012-59018031 | None:intergenic | 50.0% | |
| GGGTGTGAGAGAAGGTCATA+AGG | + | chr4_4:59018162-59018181 | None:intergenic | 50.0% | |
| !!! | GTTTTCCCCCTGTTTTAGGG+TGG | - | chr4_4:59018243-59018262 | Msa0691070:CDS | 50.0% |
| TACCTCTTGTGTGTGGTTGC+AGG | - | chr4_4:59018508-59018527 | Msa0691070:intron | 50.0% | |
| ATCCTGCAACCACACACAAG+AGG | + | chr4_4:59018513-59018532 | None:intergenic | 50.0% | |
| AGTCAGGATCCGTTGACACC+AGG | + | chr4_4:59016219-59016238 | None:intergenic | 55.0% | |
| GCCGGAAATCATAGGGTGGT+GGG | + | chr4_4:59016706-59016725 | None:intergenic | 55.0% | |
| CTTGGCCGGAAATCATAGGG+TGG | + | chr4_4:59016710-59016729 | None:intergenic | 55.0% | |
| CCCCAAAGACCTTTGCACTC+TGG | + | chr4_4:59017477-59017496 | None:intergenic | 55.0% | |
| CGAGAGCCAGTGAGTCCACA+TGG | - | chr4_4:59013978-59013997 | Msa0691070:three_prime_UTR | 60.0% | |
| GGCCGGAAATCATAGGGTGG+TGG | + | chr4_4:59016707-59016726 | None:intergenic | 60.0% | |
| AGCGAAGACGGGCACTCACG+TGG | - | chr4_4:59015765-59015784 | Msa0691070:intron | 65.0% | |
| CACAGCGACAGGTGGACCTG+AGG | - | chr4_4:59017917-59017936 | Msa0691070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59013936 | 59018856 | 59013936 | ID=Msa0691070;Name=Msa0691070 |
| chr4_4 | mRNA | 59013936 | 59018856 | 59013936 | ID=Msa0691070-mRNA-1;Parent=Msa0691070;Name=Msa0691070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=18|1|1|1|1|1|5|186|467 |
| chr4_4 | exon | 59013936 | 59014262 | 59013936 | ID=Msa0691070-mRNA-1:exon:15988;Parent=Msa0691070-mRNA-1 |
| chr4_4 | exon | 59014854 | 59014991 | 59014854 | ID=Msa0691070-mRNA-1:exon:15987;Parent=Msa0691070-mRNA-1 |
| chr4_4 | exon | 59015121 | 59015474 | 59015121 | ID=Msa0691070-mRNA-1:exon:15986;Parent=Msa0691070-mRNA-1 |
| chr4_4 | exon | 59017894 | 59018478 | 59017894 | ID=Msa0691070-mRNA-1:exon:15985;Parent=Msa0691070-mRNA-1 |
| chr4_4 | exon | 59018653 | 59018856 | 59018653 | ID=Msa0691070-mRNA-1:exon:15984;Parent=Msa0691070-mRNA-1 |
| chr4_4 | five_prime_UTR | 59018839 | 59018856 | 59018839 | ID=Msa0691070-mRNA-1:five_prime_utr;Parent=Msa0691070-mRNA-1 |
| chr4_4 | CDS | 59018653 | 59018838 | 59018653 | ID=Msa0691070-mRNA-1:cds;Parent=Msa0691070-mRNA-1 |
| chr4_4 | CDS | 59017894 | 59018478 | 59017894 | ID=Msa0691070-mRNA-1:cds;Parent=Msa0691070-mRNA-1 |
| chr4_4 | CDS | 59015121 | 59015474 | 59015121 | ID=Msa0691070-mRNA-1:cds;Parent=Msa0691070-mRNA-1 |
| chr4_4 | CDS | 59014854 | 59014991 | 59014854 | ID=Msa0691070-mRNA-1:cds;Parent=Msa0691070-mRNA-1 |
| chr4_4 | CDS | 59014122 | 59014262 | 59014122 | ID=Msa0691070-mRNA-1:cds;Parent=Msa0691070-mRNA-1 |
| chr4_4 | three_prime_UTR | 59013936 | 59014121 | 59013936 | ID=Msa0691070-mRNA-1:three_prime_utr;Parent=Msa0691070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
