AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608460 MtrunA17_Chr4g0040621 94.930 355 15 1 1 352 15 369 0.0 697
Msa0608460 MtrunA17_Chr5g0432241 61.219 361 130 5 1 352 1 360 2.15e-160 453
Msa0608460 MtrunA17_Chr5g0432251 60.833 360 132 5 1 352 1 359 1.54e-158 448
Msa0608460 MtrunA17_Chr5g0432301 59.722 360 135 6 1 351 1 359 5.29e-153 434
Msa0608460 MtrunA17_Chr5g0432211 56.667 360 133 6 1 352 1 345 9.78e-140 400
Msa0608460 MtrunA17_Chr5g0432261 56.160 349 119 3 10 352 7 327 2.02e-137 394
Msa0608460 MtrunA17_Chr7g0219141 44.286 350 185 5 10 352 11 357 3.94e-107 318
Msa0608460 MtrunA17_Chr7g0223241 44.068 354 188 4 1 350 1 348 5.01e-107 317
Msa0608460 MtrunA17_Chr7g0223231 42.938 354 192 4 1 350 1 348 2.82e-102 305
Msa0608460 MtrunA17_Chr4g0046361 44.759 353 183 6 10 352 11 361 6.14e-102 305
Msa0608460 MtrunA17_Chr4g0014681 46.610 354 177 4 10 352 11 363 2.66e-100 300
Msa0608460 MtrunA17_Chr4g0014561 46.610 354 177 4 10 352 11 363 1.11e-99 299
Msa0608460 MtrunA17_Chr7g0219161 42.136 337 185 5 10 339 11 344 3.52e-98 295
Msa0608460 MtrunA17_Chr4g0014641 46.176 353 178 4 11 352 12 363 8.96e-98 294
Msa0608460 MtrunA17_Chr1g0188391 42.737 358 187 8 8 352 9 361 1.96e-97 293
Msa0608460 MtrunA17_Chr4g0046341 45.634 355 180 4 10 352 11 364 2.85e-96 290
Msa0608460 MtrunA17_Chr4g0046531 42.363 347 195 3 10 352 373 718 3.57e-93 293
Msa0608460 MtrunA17_Chr4g0046531 41.618 346 197 3 10 351 11 355 6.13e-90 284
Msa0608460 MtrunA17_Chr4g0014661 43.966 348 189 3 10 352 11 357 1.06e-87 268
Msa0608460 MtrunA17_Chr1g0188371 41.141 333 181 7 11 332 12 340 1.18e-87 268
Msa0608460 MtrunA17_Chr4g0014591 43.678 348 190 3 10 352 11 357 4.45e-84 259
Msa0608460 MtrunA17_Chr3g0121301 39.009 323 182 8 19 333 27 342 3.23e-68 218
Msa0608460 MtrunA17_Chr4g0021981 35.593 354 204 7 13 352 25 368 1.21e-66 214
Msa0608460 MtrunA17_Chr4g0022021 34.659 352 210 7 13 352 25 368 1.64e-62 204
Msa0608460 MtrunA17_Chr4g0014601 38.247 251 152 2 10 258 11 260 3.46e-59 192
Msa0608460 MtrunA17_Chr5g0448091 33.437 323 197 9 30 339 33 350 2.08e-49 169
Msa0608460 MtrunA17_Chr7g0276411 32.923 325 203 8 25 337 26 347 1.52e-45 159
Msa0608460 MtrunA17_Chr3g0128011 32.229 332 211 9 30 351 88 415 1.94e-45 160
Msa0608460 MtrunA17_Chr7g0219171 54.887 133 56 2 223 352 117 248 4.93e-44 152
Msa0608460 MtrunA17_Chr7g0219171 43.925 107 59 1 10 116 11 116 7.73e-24 98.6
Msa0608460 MtrunA17_Chr7g0276401 31.056 322 210 6 25 337 42 360 4.25e-42 150
Msa0608460 MtrunA17_Chr3g0085211 32.110 327 205 9 32 347 43 363 1.42e-41 149
Msa0608460 MtrunA17_Chr8g0367441 33.103 290 179 7 46 333 82 358 1.74e-41 149
Msa0608460 MtrunA17_Chr8g0345851 40.191 209 115 4 148 351 86 289 3.30e-41 145
Msa0608460 MtrunA17_Chr7g0218301 29.752 363 229 9 1 339 1 361 8.47e-41 147
Msa0608460 MtrunA17_Chr1g0163611 30.473 338 219 5 13 339 23 355 2.84e-40 145
Msa0608460 MtrunA17_Chr1g0163601 29.882 338 221 5 13 339 23 355 4.63e-40 145
Msa0608460 MtrunA17_Chr7g0218271 28.926 363 232 9 1 339 1 361 4.97e-40 145
Msa0608460 MtrunA17_Chr8g0367501 31.579 342 211 7 23 352 25 355 6.39e-40 145
Msa0608460 MtrunA17_Chr1g0200491 29.261 352 221 11 4 339 19 358 1.77e-39 143
Msa0608460 MtrunA17_Chr7g0218131 37.306 193 120 1 147 339 165 356 2.66e-39 143
Msa0608460 MtrunA17_Chr8g0367451 32.110 327 205 7 25 337 40 363 3.77e-39 142
Msa0608460 MtrunA17_Chr3g0085201 30.682 352 225 11 6 347 8 350 3.41e-38 139
Msa0608460 MtrunA17_Chr2g0314271 31.132 318 210 6 30 340 27 342 5.99e-38 139
Msa0608460 MtrunA17_Chr7g0218211 30.094 319 207 9 32 338 40 354 8.43e-38 139
Msa0608460 MtrunA17_Chr8g0367491 32.794 247 161 5 93 337 118 361 2.26e-37 138
Msa0608460 MtrunA17_Chr7g0218181 34.715 193 125 1 147 339 162 353 3.79e-37 137
Msa0608460 MtrunA17_Chr7g0218261 29.653 317 212 7 32 339 40 354 9.22e-37 136
Msa0608460 MtrunA17_Chr2g0307521 35.751 193 119 3 147 337 158 347 6.54e-36 134
Msa0608460 MtrunA17_Chr1g0163621 29.882 338 221 5 13 339 37 369 1.25e-35 133
Msa0608460 MtrunA17_Chr3g0130011 28.902 346 226 10 4 340 12 346 1.26e-35 132
Msa0608460 MtrunA17_Chr8g0367381 39.884 173 102 2 148 319 154 325 8.48e-35 130
Msa0608460 MtrunA17_Chr3g0130061 28.818 347 227 10 3 340 11 346 1.90e-33 127
Msa0608460 MtrunA17_Chr6g0482291 33.939 165 97 3 177 337 5 161 3.05e-24 97.8
Msa0608460 MtrunA17_Chr8g0367401 41.284 109 63 1 147 255 3 110 1.14e-20 87.0
Msa0608460 MtrunA17_Chr4g0014611 56.566 99 40 1 257 352 9 107 1.05e-18 80.5
Msa0608460 MtrunA17_Chr4g0014671 55.238 105 44 1 251 352 30 134 3.72e-16 74.3
Msa0608460 MtrunA17_Chr8g0367461 37.113 97 60 1 242 337 1 97 3.23e-15 71.2
Msa0608460 MtrunA17_Chr8g0367421 34.862 109 53 2 147 255 3 93 8.10e-14 67.8
Msa0608460 MtrunA17_Chr4g0011691 49.367 79 37 3 257 333 140 217 3.87e-13 68.2
Msa0608460 MtrunA17_Chr1g0170941 45.455 66 36 0 188 253 11 76 7.60e-12 60.5
Msa0608460 MtrunA17_Chr8g0367391 40.476 84 49 1 255 337 36 119 8.94e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608460 AT4G35150.1 34.770 348 173 9 14 348 14 320 4.01e-62 201
Msa0608460 AT4G35160.1 35.519 366 209 11 6 348 16 377 1.21e-60 199
Msa0608460 AT5G54160.1 32.931 331 209 8 30 351 34 360 1.76e-49 170
Msa0608460 AT1G51990.2 32.288 319 200 9 44 352 50 362 7.50e-43 152
Msa0608460 AT1G51990.1 32.288 319 200 9 44 352 50 362 6.41e-42 150
Msa0608460 AT3G53140.1 32.188 320 203 8 30 337 27 344 6.18e-41 147
Msa0608460 AT1G77520.1 28.011 357 224 10 4 338 22 367 1.84e-36 135
Msa0608460 AT1G33030.1 30.000 320 209 9 30 338 21 336 2.35e-33 127
Msa0608460 AT1G63140.2 32.065 368 213 15 6 350 26 379 2.79e-32 124
Msa0608460 AT1G63140.4 32.065 368 213 15 6 350 46 399 3.25e-32 125
Msa0608460 AT1G21130.1 28.135 327 208 9 30 337 40 358 2.57e-31 122
Msa0608460 AT1G76790.1 28.221 326 203 8 30 333 30 346 5.92e-31 120
Msa0608460 AT1G21100.1 27.829 327 209 9 30 337 40 358 1.25e-30 120
Msa0608460 AT5G53810.1 27.778 342 223 7 30 351 40 377 1.55e-29 117
Msa0608460 AT1G21110.1 27.778 324 207 10 30 334 40 355 1.87e-29 117
Msa0608460 AT5G37170.2 35.000 200 116 7 158 349 38 231 9.57e-29 111
Msa0608460 AT1G21120.1 27.523 327 210 10 30 337 40 358 1.45e-28 114
Msa0608460 AT5G37170.1 35.000 200 116 7 158 349 138 331 2.13e-28 113
Msa0608460 AT1G21120.2 27.439 328 211 10 30 338 88 407 3.26e-28 114
Msa0608460 AT5G37170.3 35.714 182 107 6 176 349 4 183 8.63e-28 107
Msa0608460 AT1G77530.1 30.088 339 212 8 13 333 31 362 3.39e-27 110
Msa0608460 AT1G62900.1 38.144 194 107 6 164 350 16 203 8.68e-26 103
Msa0608460 AT1G33030.2 27.966 236 156 9 30 255 21 252 6.63e-14 71.2
Msa0608460 AT1G33030.3 27.119 236 158 8 30 255 21 252 1.43e-13 70.5
Msa0608460 AT1G63140.1 30.483 269 156 11 6 255 46 302 4.25e-13 69.7

Find 89 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTCAATTGCACATTTA+AGG 0.108406 4_2:-55618741 None:intergenic
AAAATAACGGTGTTGCATTT+TGG 0.138451 4_2:+55619082 Msa0608460:CDS
GAATTTATGCTTTAAGATTT+TGG 0.158961 4_2:-55620403 None:intergenic
CATGGTATCAACTTTCTAAT+TGG 0.214803 4_2:+55619025 Msa0608460:CDS
AGCACAATTGTTCTATGATT+TGG 0.221525 4_2:+55620000 Msa0608460:CDS
TGAACATATTATTGTGATTA+GGG 0.237673 4_2:-55619122 None:intergenic
CAATTCAATTGCACATTTAA+GGG 0.288826 4_2:-55618740 None:intergenic
AATACAATGCACTCAATGTT+TGG 0.294021 4_2:-55619285 None:intergenic
CAAACTTACAGAGTACAAAA+AGG 0.311906 4_2:-55620258 None:intergenic
TTGAACATATTATTGTGATT+AGG 0.341884 4_2:-55619123 None:intergenic
CAATTACTAGTACTGGTACT+AGG 0.343088 4_2:-55620152 None:intergenic
GATCTTCCACATGTTGTTGA+TGG 0.360459 4_2:+55619309 Msa0608460:CDS
TTGAAGTGCTTCACACTATA+AGG 0.361244 4_2:+55620172 Msa0608460:three_prime_UTR
TGCAACATGATCTTCACTTT+GGG 0.361816 4_2:-55618656 None:intergenic
CCAGTGTATTCTCTGATTGT+TGG 0.375578 4_2:+55620196 Msa0608460:three_prime_UTR
CATGTTGTTGATGGCTTACA+AGG 0.376283 4_2:+55619318 Msa0608460:CDS
TGCATCTAGATTATTGCTTA+AGG 0.382421 4_2:+55618942 Msa0608460:CDS
TAAAGGGGTGTTTGAAGGAT+TGG 0.402290 4_2:+55619200 Msa0608460:CDS
CCAGATGTTATACACAACTA+TGG 0.417598 4_2:+55618769 Msa0608460:CDS
TTGCAACATGATCTTCACTT+TGG 0.418082 4_2:-55618657 None:intergenic
GTTTGAAGGATTGGAATCAT+TGG 0.419856 4_2:+55619209 Msa0608460:CDS
TACCATGGTTTACTCAAAAC+CGG 0.422617 4_2:-55619009 None:intergenic
ATACAATGCACTCAATGTTT+GGG 0.429620 4_2:-55619284 None:intergenic
AGTGAAAACTTAAAATATGT+TGG 0.443663 4_2:+55619342 Msa0608460:CDS
TATGGCTTGTGAAACTAGAT+TGG 0.445009 4_2:+55619152 Msa0608460:CDS
TAACATAGATGTCATGCTAA+AGG 0.452511 4_2:-55618971 None:intergenic
GTTCTATGATTTGGAGATGA+TGG 0.453028 4_2:+55620009 Msa0608460:CDS
CTACCTTGAGTAAAATTGAA+TGG 0.457108 4_2:-55619395 None:intergenic
GTGTAACCCGTGCCGATGCA+CGG 0.458308 4_2:+55620343 Msa0608460:three_prime_UTR
CCATAGTTGTGTATAACATC+TGG 0.459982 4_2:-55618769 None:intergenic
GTTGATGTTGGTGGAGGCAT+AGG 0.464053 4_2:+55619231 Msa0608460:CDS
CCAATCCACCCTTCTAAAAC+CGG 0.467765 4_2:+55618829 Msa0608460:CDS
GAGATGATGGTGTTGGTCAA+TGG 0.468447 4_2:+55620022 Msa0608460:CDS
TATTATTGTGATTAGGGTCA+TGG 0.475174 4_2:-55619116 None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG 0.475412 4_2:+55620047 Msa0608460:CDS
TACCTTGAGTAAAATTGAAT+GGG 0.480602 4_2:-55619394 None:intergenic
TTGTGATGGGAAAGTGTAAA+GGG 0.481829 4_2:+55619184 Msa0608460:CDS
AACATAGATGTCATGCTAAA+GGG 0.491147 4_2:-55618970 None:intergenic
AAGTGTAAAGGGGTGTTTGA+AGG 0.495522 4_2:+55619195 Msa0608460:CDS
AATTACTAGTACTGGTACTA+GGG 0.499071 4_2:-55620151 None:intergenic
AGCACTTCAATTACTAGTAC+TGG 0.500351 4_2:-55620159 None:intergenic
GTCAACCCGTGCATCGGCAC+GGG 0.504902 4_2:-55620349 None:intergenic
TTGGAATCATTGGTTGATGT+TGG 0.505871 4_2:+55619219 Msa0608460:CDS
TACAAGATAACTCATGGTCT+TGG 0.510347 4_2:+55620103 Msa0608460:CDS
GAAAATGTGGTTGAATACTT+TGG 0.510836 4_2:-55618698 None:intergenic
GTTACATGTCATACATGGTC+CGG 0.511183 4_2:+55618990 Msa0608460:CDS
TAATATGTTCAATGAAGCTA+TGG 0.513851 4_2:+55619134 Msa0608460:CDS
AGGAAGCAATAAGGAGCAAA+GGG 0.515933 4_2:+55619918 Msa0608460:CDS
TTGATGTTGGTGGAGGCATA+GGG 0.518405 4_2:+55619232 Msa0608460:CDS
TCTTCACTTTGGGATCCCAT+TGG 0.518428 4_2:-55618646 None:intergenic
ATTGGCTTCTAGTGTTGTGA+TGG 0.519792 4_2:+55619170 Msa0608460:CDS
GAATCATTGGTTGATGTTGG+TGG 0.520300 4_2:+55619222 Msa0608460:CDS
AGGCATAGGGACTATTACTA+AGG 0.522501 4_2:+55619245 Msa0608460:CDS
CTGAACCGGTGTAACAGTTA+CGG 0.524622 4_2:+55620371 Msa0608460:three_prime_UTR
GATGCACGGGTTGACTGAAC+CGG 0.525870 4_2:+55620357 Msa0608460:three_prime_UTR
AGTCAACCCGTGCATCGGCA+CGG 0.525999 4_2:-55620350 None:intergenic
GTTGAGGAATCAAAACCAAT+GGG 0.529523 4_2:+55618631 Msa0608460:exon
AAGGGAATAAAACACACAAT+CGG 0.535218 4_2:-55620239 None:intergenic
AGTAAAATTGAATGGGTAGG+AGG 0.536012 4_2:-55619387 None:intergenic
TGAAGGGTGTATTACATGAC+TGG 0.541126 4_2:+55619858 Msa0608460:intron
AGTTGAGGAATCAAAACCAA+TGG 0.547437 4_2:+55618630 Msa0608460:exon
TGTAACCCGTGCCGATGCAC+GGG 0.557705 4_2:+55620344 Msa0608460:three_prime_UTR
GATAATCATAGACGCAGTGA+TGG 0.557902 4_2:+55619946 Msa0608460:CDS
AGTAACTACAAGATAACTCA+TGG 0.563555 4_2:+55620097 Msa0608460:CDS
GAAAACTTAAAATATGTTGG+AGG 0.568473 4_2:+55619345 Msa0608460:CDS
ATAATCATAGACGCAGTGAT+GGG 0.569255 4_2:+55619947 Msa0608460:CDS
TGTTGGAGGTGACATGTTTG+AGG 0.569518 4_2:+55619359 Msa0608460:CDS
AGTTTATGAAACTGAAAATG+TGG 0.571931 4_2:-55618711 None:intergenic
CGCAGTGATGGGGAATGAGA+AGG 0.578489 4_2:+55619958 Msa0608460:CDS
TTTCGGAGTGAAAAGGTGAA+GGG 0.583842 4_2:-55619062 None:intergenic
AAGGAAGCAATAAGGAGCAA+AGG 0.587760 4_2:+55619917 Msa0608460:CDS
TTAGTCCGTAACTGTTACAC+CGG 0.588111 4_2:-55620376 None:intergenic
TATCGTCTCTATTTGTTGTG+AGG 0.588566 4_2:-55618608 None:intergenic
GGTTCAGTCAACCCGTGCAT+CGG 0.589626 4_2:-55620355 None:intergenic
TCATTGGTTGATGTTGGTGG+AGG 0.592377 4_2:+55619225 Msa0608460:CDS
TTGAGTAAAATTGAATGGGT+AGG 0.594723 4_2:-55619390 None:intergenic
CAATTAGAAAGTTGATACCA+TGG 0.598930 4_2:-55619024 None:intergenic
GTTGTGATGGGAAAGTGTAA+AGG 0.606315 4_2:+55619183 Msa0608460:CDS
TGATTTGGAGATGATGGTGT+TGG 0.610739 4_2:+55620015 Msa0608460:CDS
TGTAAGCCATCAACAACATG+TGG 0.632178 4_2:-55619315 None:intergenic
TAGATGTCATGCTAAAGGGA+TGG 0.635207 4_2:-55618966 None:intergenic
TCTATGTTACATGTCATACA+TGG 0.641412 4_2:+55618985 Msa0608460:CDS
TTGGCTTCTAGTGTTGTGAT+GGG 0.642008 4_2:+55619171 Msa0608460:CDS
CATCAAACGATATATGTCAC+CGG 0.644449 4_2:-55618848 None:intergenic
TAATCATAGACGCAGTGATG+GGG 0.654303 4_2:+55619948 Msa0608460:CDS
ACAAATAGAGACGATAGTTG+AGG 0.654503 4_2:+55618615 Msa0608460:five_prime_UTR
TGTGATGGGAAAGTGTAAAG+GGG 0.694075 4_2:+55619185 Msa0608460:CDS
ATTACATGACTGGAACGATG+AGG 0.712908 4_2:+55619868 Msa0608460:CDS
CCAACAATCAGAGAATACAC+TGG 0.713575 4_2:-55620196 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_2:55619468-55619487 Msa0608460:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_2:55619574-55619593 Msa0608460:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_2:55619575-55619594 Msa0608460:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_2:55619685-55619704 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_2:55619761-55619780 Msa0608460:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_2:55619762-55619781 Msa0608460:intron 10.0%
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_2:55619468-55619487 Msa0608460:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_2:55619574-55619593 Msa0608460:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_2:55619575-55619594 Msa0608460:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_2:55619685-55619704 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_2:55619761-55619780 Msa0608460:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_2:55619762-55619781 Msa0608460:intron 10.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_2:55620281-55620300 Msa0608460:three_prime_UTR 15.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_2:55620281-55620300 Msa0608460:three_prime_UTR 15.0%
!! TGAACATATTATTGTGATTA+GGG - chr4_2:55619125-55619144 None:intergenic 20.0%
!! TTGAACATATTATTGTGATT+AGG - chr4_2:55619126-55619145 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_2:55619342-55619361 Msa0608460:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_2:55619449-55619468 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_2:55619841-55619860 Msa0608460:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_2:55619842-55619861 Msa0608460:intron 20.0%
!! TGAACATATTATTGTGATTA+GGG - chr4_2:55619125-55619144 None:intergenic 20.0%
!! TTGAACATATTATTGTGATT+AGG - chr4_2:55619126-55619145 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_2:55619342-55619361 Msa0608460:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_2:55619449-55619468 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_2:55619841-55619860 Msa0608460:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_2:55619842-55619861 Msa0608460:intron 20.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_2:55618714-55618733 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_2:55618743-55618762 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_2:55618744-55618763 None:intergenic 25.0%
! TAATATGTTCAATGAAGCTA+TGG + chr4_2:55619134-55619153 Msa0608460:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_2:55619345-55619364 Msa0608460:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_2:55619397-55619416 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_2:55619774-55619793 Msa0608460:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_2:55619898-55619917 Msa0608460:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_2:55620260-55620279 None:intergenic 25.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_2:55618714-55618733 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_2:55618743-55618762 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_2:55618744-55618763 None:intergenic 25.0%
! TAATATGTTCAATGAAGCTA+TGG + chr4_2:55619134-55619153 Msa0608460:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_2:55619345-55619364 Msa0608460:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_2:55619397-55619416 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_2:55619774-55619793 Msa0608460:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_2:55619898-55619917 Msa0608460:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_2:55620260-55620279 None:intergenic 25.0%
GAAAATGTGGTTGAATACTT+TGG - chr4_2:55618701-55618720 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_2:55618804-55618823 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_2:55618805-55618824 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_2:55618942-55618961 Msa0608460:CDS 30.0%
AACATAGATGTCATGCTAAA+GGG - chr4_2:55618973-55618992 None:intergenic 30.0%
TAACATAGATGTCATGCTAA+AGG - chr4_2:55618974-55618993 None:intergenic 30.0%
TCTATGTTACATGTCATACA+TGG + chr4_2:55618985-55619004 Msa0608460:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_2:55619027-55619046 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_2:55619025-55619044 Msa0608460:CDS 30.0%
!! AAATGCAACACCGTTATTTT+CGG - chr4_2:55619082-55619101 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_2:55619082-55619101 Msa0608460:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_2:55619083-55619102 Msa0608460:CDS 30.0%
TATTATTGTGATTAGGGTCA+TGG - chr4_2:55619119-55619138 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_2:55619287-55619306 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_2:55619288-55619307 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_2:55619393-55619412 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_2:55619392-55619411 Msa0608460:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_2:55619398-55619417 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_2:55619551-55619570 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_2:55619552-55619571 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_2:55619595-55619614 Msa0608460:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_2:55619909-55619928 Msa0608460:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_2:55620000-55620019 Msa0608460:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_2:55620047-55620066 Msa0608460:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_2:55620097-55620116 Msa0608460:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_2:55620154-55620173 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_2:55620242-55620261 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_2:55620261-55620280 None:intergenic 30.0%
GAAAATGTGGTTGAATACTT+TGG - chr4_2:55618701-55618720 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_2:55618804-55618823 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_2:55618805-55618824 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_2:55618942-55618961 Msa0608460:CDS 30.0%
AACATAGATGTCATGCTAAA+GGG - chr4_2:55618973-55618992 None:intergenic 30.0%
TAACATAGATGTCATGCTAA+AGG - chr4_2:55618974-55618993 None:intergenic 30.0%
TCTATGTTACATGTCATACA+TGG + chr4_2:55618985-55619004 Msa0608460:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_2:55619027-55619046 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_2:55619025-55619044 Msa0608460:CDS 30.0%
!! AAATGCAACACCGTTATTTT+CGG - chr4_2:55619082-55619101 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_2:55619082-55619101 Msa0608460:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_2:55619083-55619102 Msa0608460:CDS 30.0%
TATTATTGTGATTAGGGTCA+TGG - chr4_2:55619119-55619138 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_2:55619287-55619306 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_2:55619288-55619307 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_2:55619393-55619412 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_2:55619392-55619411 Msa0608460:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_2:55619398-55619417 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_2:55619551-55619570 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_2:55619552-55619571 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_2:55619595-55619614 Msa0608460:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_2:55619909-55619928 Msa0608460:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_2:55620000-55620019 Msa0608460:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_2:55620047-55620066 Msa0608460:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_2:55620097-55620116 Msa0608460:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_2:55620154-55620173 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_2:55620242-55620261 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_2:55620261-55620280 None:intergenic 30.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_2:55618611-55618630 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_2:55618615-55618634 Msa0608460:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_2:55618630-55618649 Msa0608460:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_2:55618631-55618650 Msa0608460:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_2:55618659-55618678 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_2:55618660-55618679 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_2:55618772-55618791 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_2:55618769-55618788 Msa0608460:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_2:55618840-55618859 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_2:55618841-55618860 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_2:55618851-55618870 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_2:55618868-55618887 Msa0608460:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_2:55619012-55619031 None:intergenic 35.0%
! CCTTTTCACTCCGAAAATAA+CGG + chr4_2:55619069-55619088 Msa0608460:CDS 35.0%
! TATGGCTTGTGAAACTAGAT+TGG + chr4_2:55619152-55619171 Msa0608460:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_2:55619184-55619203 Msa0608460:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_2:55619209-55619228 Msa0608460:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_2:55619219-55619238 Msa0608460:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_2:55619390-55619409 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_2:55619947-55619966 Msa0608460:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_2:55620009-55620028 Msa0608460:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_2:55620103-55620122 Msa0608460:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_2:55620123-55620142 Msa0608460:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_2:55620155-55620174 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_2:55620162-55620181 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_2:55620172-55620191 Msa0608460:three_prime_UTR 35.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_2:55618611-55618630 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_2:55618615-55618634 Msa0608460:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_2:55618630-55618649 Msa0608460:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_2:55618631-55618650 Msa0608460:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_2:55618659-55618678 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_2:55618660-55618679 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_2:55618772-55618791 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_2:55618769-55618788 Msa0608460:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_2:55618840-55618859 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_2:55618841-55618860 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_2:55618851-55618870 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_2:55618868-55618887 Msa0608460:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_2:55619012-55619031 None:intergenic 35.0%
! CCTTTTCACTCCGAAAATAA+CGG + chr4_2:55619069-55619088 Msa0608460:CDS 35.0%
! TATGGCTTGTGAAACTAGAT+TGG + chr4_2:55619152-55619171 Msa0608460:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_2:55619184-55619203 Msa0608460:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_2:55619209-55619228 Msa0608460:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_2:55619219-55619238 Msa0608460:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_2:55619390-55619409 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_2:55619947-55619966 Msa0608460:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_2:55620009-55620028 Msa0608460:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_2:55620103-55620122 Msa0608460:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_2:55620123-55620142 Msa0608460:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_2:55620155-55620174 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_2:55620162-55620181 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_2:55620172-55620191 Msa0608460:three_prime_UTR 35.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_2:55618799-55618818 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_2:55618969-55618988 None:intergenic 40.0%
GTTACATGTCATACATGGTC+CGG + chr4_2:55618990-55619009 Msa0608460:CDS 40.0%
TTTCGGAGTGAAAAGGTGAA+GGG - chr4_2:55619065-55619084 None:intergenic 40.0%
! TTTTCGGAGTGAAAAGGTGA+AGG - chr4_2:55619066-55619085 None:intergenic 40.0%
!! CCGTTATTTTCGGAGTGAAA+AGG - chr4_2:55619072-55619091 None:intergenic 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_2:55619170-55619189 Msa0608460:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_2:55619171-55619190 Msa0608460:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_2:55619183-55619202 Msa0608460:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_2:55619185-55619204 Msa0608460:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_2:55619195-55619214 Msa0608460:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_2:55619200-55619219 Msa0608460:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_2:55619222-55619241 Msa0608460:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_2:55619245-55619264 Msa0608460:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_2:55619309-55619328 Msa0608460:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_2:55619318-55619337 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_2:55619318-55619337 Msa0608460:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_2:55619858-55619877 Msa0608460:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_2:55619868-55619887 Msa0608460:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_2:55619917-55619936 Msa0608460:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_2:55619918-55619937 Msa0608460:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_2:55619946-55619965 Msa0608460:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_2:55619948-55619967 Msa0608460:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_2:55620015-55620034 Msa0608460:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_2:55620070-55620089 Msa0608460:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_2:55620074-55620093 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_2:55620199-55620218 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_2:55620196-55620215 Msa0608460:three_prime_UTR 40.0%
TTAGTCCGTAACTGTTACAC+CGG - chr4_2:55620379-55620398 None:intergenic 40.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_2:55618799-55618818 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_2:55618969-55618988 None:intergenic 40.0%
GTTACATGTCATACATGGTC+CGG + chr4_2:55618990-55619009 Msa0608460:CDS 40.0%
TTTCGGAGTGAAAAGGTGAA+GGG - chr4_2:55619065-55619084 None:intergenic 40.0%
! TTTTCGGAGTGAAAAGGTGA+AGG - chr4_2:55619066-55619085 None:intergenic 40.0%
!! CCGTTATTTTCGGAGTGAAA+AGG - chr4_2:55619072-55619091 None:intergenic 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_2:55619170-55619189 Msa0608460:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_2:55619171-55619190 Msa0608460:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_2:55619183-55619202 Msa0608460:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_2:55619185-55619204 Msa0608460:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_2:55619195-55619214 Msa0608460:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_2:55619200-55619219 Msa0608460:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_2:55619222-55619241 Msa0608460:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_2:55619245-55619264 Msa0608460:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_2:55619309-55619328 Msa0608460:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_2:55619318-55619337 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_2:55619318-55619337 Msa0608460:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_2:55619858-55619877 Msa0608460:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_2:55619868-55619887 Msa0608460:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_2:55619917-55619936 Msa0608460:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_2:55619918-55619937 Msa0608460:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_2:55619946-55619965 Msa0608460:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_2:55619948-55619967 Msa0608460:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_2:55620015-55620034 Msa0608460:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_2:55620070-55620089 Msa0608460:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_2:55620074-55620093 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_2:55620199-55620218 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_2:55620196-55620215 Msa0608460:three_prime_UTR 40.0%
TTAGTCCGTAACTGTTACAC+CGG - chr4_2:55620379-55620398 None:intergenic 40.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_2:55618649-55618668 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_2:55618795-55618814 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_2:55618829-55618848 Msa0608460:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_2:55619007-55619026 Msa0608460:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_2:55619225-55619244 Msa0608460:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_2:55619232-55619251 Msa0608460:CDS 45.0%
TGTTGGAGGTGACATGTTTG+AGG + chr4_2:55619359-55619378 Msa0608460:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_2:55620022-55620041 Msa0608460:CDS 45.0%
CTGAACCGGTGTAACAGTTA+CGG + chr4_2:55620371-55620390 Msa0608460:three_prime_UTR 45.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_2:55618649-55618668 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_2:55618795-55618814 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_2:55618829-55618848 Msa0608460:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_2:55619007-55619026 Msa0608460:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_2:55619225-55619244 Msa0608460:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_2:55619232-55619251 Msa0608460:CDS 45.0%
TGTTGGAGGTGACATGTTTG+AGG + chr4_2:55619359-55619378 Msa0608460:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_2:55620022-55620041 Msa0608460:CDS 45.0%
CTGAACCGGTGTAACAGTTA+CGG + chr4_2:55620371-55620390 Msa0608460:three_prime_UTR 45.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_2:55618832-55618851 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_2:55618837-55618856 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_2:55619231-55619250 Msa0608460:CDS 50.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_2:55618832-55618851 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_2:55618837-55618856 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_2:55619231-55619250 Msa0608460:CDS 50.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_2:55619958-55619977 Msa0608460:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_2:55620358-55620377 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_2:55620357-55620376 Msa0608460:three_prime_UTR 55.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_2:55619958-55619977 Msa0608460:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_2:55620358-55620377 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_2:55620357-55620376 Msa0608460:three_prime_UTR 55.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_2:55620343-55620362 Msa0608460:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_2:55620344-55620363 Msa0608460:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_2:55620353-55620372 None:intergenic 60.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_2:55620343-55620362 Msa0608460:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_2:55620344-55620363 Msa0608460:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_2:55620353-55620372 None:intergenic 60.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_2:55620352-55620371 None:intergenic 65.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_2:55620352-55620371 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55618608 55620415 55618608 ID=Msa0608460;Name=Msa0608460
chr4_2 mRNA 55618608 55620415 55618608 ID=Msa0608460-mRNA-1;Parent=Msa0608460;Name=Msa0608460-mRNA-1;_AED=0.22;_eAED=0.22;_QI=41|1|1|1|1|1|2|259|352
chr4_2 exon 55618608 55619413 55618608 ID=Msa0608460-mRNA-1:exon:14204;Parent=Msa0608460-mRNA-1
chr4_2 exon 55619863 55620415 55619863 ID=Msa0608460-mRNA-1:exon:14205;Parent=Msa0608460-mRNA-1
chr4_2 five_prime_UTR 55618608 55618648 55618608 ID=Msa0608460-mRNA-1:five_prime_utr;Parent=Msa0608460-mRNA-1
chr4_2 CDS 55618649 55619413 55618649 ID=Msa0608460-mRNA-1:cds;Parent=Msa0608460-mRNA-1
chr4_2 CDS 55619863 55620156 55619863 ID=Msa0608460-mRNA-1:cds;Parent=Msa0608460-mRNA-1
chr4_2 three_prime_UTR 55620157 55620415 55620157 ID=Msa0608460-mRNA-1:three_prime_utr;Parent=Msa0608460-mRNA-1
Gene Sequence

>Msa0608460

ATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCAAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGTTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATATAGAAGTGATGTATGAACTTAATGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGCATGACATCTATGTTACATGTCATACATGGTCCGGTTTTGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACTCCGAAAATAACGGTGTTGCATTTTGGGATTATGCTAGCCATGACCCTAATCACAATAATATGTTCAATGAAGCTATGGCTTGTGAAACTAGATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTCATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAGGCTATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG
Protein sequence

>Msa0608460

MGSQSEDHVAKLLQAQTKVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDIEVMYELNDASRLLLKDHPFSMTSMLHVIHGPVLSKPWYQLSNWYKNDDPSPFHSENNGVAFWDYASHDPNHNNMFNEAMACETRLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*