AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554880 MtrunA17_Chr4g0040621 95.775 355 12 1 1 352 15 369 0.0 701
Msa0554880 MtrunA17_Chr5g0432241 61.773 361 128 5 1 352 1 360 1.32e-161 456
Msa0554880 MtrunA17_Chr5g0432251 61.389 360 130 5 1 352 1 359 1.59e-159 451
Msa0554880 MtrunA17_Chr5g0432301 60.278 360 133 6 1 351 1 359 3.29e-154 437
Msa0554880 MtrunA17_Chr5g0432211 56.944 360 132 6 1 352 1 345 1.98e-140 402
Msa0554880 MtrunA17_Chr5g0432261 56.447 349 118 3 10 352 7 327 3.25e-138 395
Msa0554880 MtrunA17_Chr7g0223241 44.633 354 186 4 1 350 1 348 5.38e-108 320
Msa0554880 MtrunA17_Chr7g0219141 44.571 350 184 5 10 352 11 357 1.48e-107 318
Msa0554880 MtrunA17_Chr7g0223231 43.503 354 190 4 1 350 1 348 1.99e-103 308
Msa0554880 MtrunA17_Chr4g0046361 45.042 353 182 6 10 352 11 361 1.65e-102 306
Msa0554880 MtrunA17_Chr4g0014681 46.610 354 177 4 10 352 11 363 4.99e-100 300
Msa0554880 MtrunA17_Chr4g0014561 46.610 354 177 4 10 352 11 363 1.65e-99 298
Msa0554880 MtrunA17_Chr7g0219161 42.730 337 183 5 10 339 11 344 6.20e-99 297
Msa0554880 MtrunA17_Chr1g0188391 43.017 358 186 8 8 352 9 361 1.45e-97 293
Msa0554880 MtrunA17_Chr4g0014641 46.176 353 178 4 11 352 12 363 2.30e-97 293
Msa0554880 MtrunA17_Chr4g0046341 45.634 355 180 4 10 352 11 364 3.95e-96 290
Msa0554880 MtrunA17_Chr4g0046531 42.651 347 194 3 10 352 373 718 8.70e-94 294
Msa0554880 MtrunA17_Chr4g0046531 41.908 346 196 3 10 351 11 355 1.67e-90 286
Msa0554880 MtrunA17_Chr4g0014661 44.253 348 188 3 10 352 11 357 4.30e-88 269
Msa0554880 MtrunA17_Chr1g0188371 41.441 333 180 7 11 332 12 340 7.54e-88 269
Msa0554880 MtrunA17_Chr4g0014591 43.966 348 189 3 10 352 11 357 1.75e-84 259
Msa0554880 MtrunA17_Chr3g0121301 39.252 321 184 7 19 333 27 342 2.08e-68 218
Msa0554880 MtrunA17_Chr4g0021981 35.876 354 203 7 13 352 25 368 4.92e-67 215
Msa0554880 MtrunA17_Chr4g0022021 34.943 352 209 7 13 352 25 368 9.02e-63 204
Msa0554880 MtrunA17_Chr4g0014601 38.645 251 151 2 10 258 11 260 1.03e-59 193
Msa0554880 MtrunA17_Chr5g0448091 33.437 323 197 9 30 339 33 350 1.79e-49 169
Msa0554880 MtrunA17_Chr7g0276411 32.923 325 203 8 25 337 26 347 1.65e-45 159
Msa0554880 MtrunA17_Chr3g0128011 31.928 332 212 9 30 351 88 415 1.90e-45 160
Msa0554880 MtrunA17_Chr7g0219171 54.887 133 56 2 223 352 117 248 5.72e-44 152
Msa0554880 MtrunA17_Chr7g0219171 43.925 107 59 1 10 116 11 116 6.00e-24 99.0
Msa0554880 MtrunA17_Chr7g0276401 30.909 330 200 7 25 337 42 360 4.25e-42 150
Msa0554880 MtrunA17_Chr3g0085211 32.110 327 205 9 32 347 43 363 1.11e-41 149
Msa0554880 MtrunA17_Chr8g0367441 33.103 290 179 7 46 333 82 358 1.13e-41 149
Msa0554880 MtrunA17_Chr8g0345851 40.191 209 115 4 148 351 86 289 3.13e-41 145
Msa0554880 MtrunA17_Chr7g0218301 30.028 363 228 9 1 339 1 361 3.64e-41 148
Msa0554880 MtrunA17_Chr7g0218271 29.201 363 231 9 1 339 1 361 2.55e-40 145
Msa0554880 MtrunA17_Chr1g0163611 30.473 338 219 5 13 339 23 355 3.18e-40 145
Msa0554880 MtrunA17_Chr1g0163601 29.882 338 221 5 13 339 23 355 5.09e-40 145
Msa0554880 MtrunA17_Chr8g0367501 31.579 342 211 7 23 352 25 355 5.20e-40 145
Msa0554880 MtrunA17_Chr7g0218131 37.824 193 119 1 147 339 165 356 1.17e-39 144
Msa0554880 MtrunA17_Chr1g0200491 29.261 352 221 11 4 339 19 358 1.75e-39 143
Msa0554880 MtrunA17_Chr8g0367451 32.110 327 205 7 25 337 40 363 2.06e-39 143
Msa0554880 MtrunA17_Chr2g0314271 31.065 338 220 7 14 340 7 342 8.48e-39 141
Msa0554880 MtrunA17_Chr3g0085201 30.682 352 225 11 6 347 8 350 3.27e-38 139
Msa0554880 MtrunA17_Chr7g0218211 30.094 319 207 9 32 338 40 354 7.60e-38 139
Msa0554880 MtrunA17_Chr8g0367491 32.794 247 161 5 93 337 118 361 1.26e-37 138
Msa0554880 MtrunA17_Chr7g0218181 34.715 193 125 1 147 339 162 353 2.64e-37 137
Msa0554880 MtrunA17_Chr7g0218261 29.653 317 212 7 32 339 40 354 8.14e-37 136
Msa0554880 MtrunA17_Chr2g0307521 35.751 193 119 3 147 337 158 347 5.05e-36 134
Msa0554880 MtrunA17_Chr3g0130011 29.191 346 225 10 4 340 12 346 6.66e-36 133
Msa0554880 MtrunA17_Chr1g0163621 29.882 338 221 5 13 339 37 369 1.31e-35 133
Msa0554880 MtrunA17_Chr8g0367381 39.884 173 102 2 148 319 154 325 7.34e-35 130
Msa0554880 MtrunA17_Chr3g0130061 29.107 347 226 10 3 340 11 346 1.16e-33 127
Msa0554880 MtrunA17_Chr6g0482291 33.939 165 97 3 177 337 5 161 3.28e-24 97.8
Msa0554880 MtrunA17_Chr8g0367401 41.284 109 63 1 147 255 3 110 1.05e-20 87.0
Msa0554880 MtrunA17_Chr4g0014611 56.566 99 40 1 257 352 9 107 1.10e-18 80.5
Msa0554880 MtrunA17_Chr4g0014671 55.238 105 44 1 251 352 30 134 3.99e-16 74.3
Msa0554880 MtrunA17_Chr8g0367461 37.113 97 60 1 242 337 1 97 3.50e-15 70.9
Msa0554880 MtrunA17_Chr8g0367421 34.862 109 53 2 147 255 3 93 7.41e-14 67.8
Msa0554880 MtrunA17_Chr4g0011691 49.367 79 37 3 257 333 140 217 3.48e-13 68.6
Msa0554880 MtrunA17_Chr1g0170941 45.455 66 36 0 188 253 11 76 7.53e-12 60.5
Msa0554880 MtrunA17_Chr8g0367391 40.476 84 49 1 255 337 36 119 8.77e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554880 AT4G35150.1 35.057 348 172 9 14 348 14 320 1.39e-62 202
Msa0554880 AT4G35160.1 35.246 366 210 11 6 348 16 377 7.40e-60 197
Msa0554880 AT5G54160.1 32.931 331 209 8 30 351 34 360 1.33e-49 170
Msa0554880 AT1G51990.2 32.288 319 200 9 44 352 50 362 8.24e-43 152
Msa0554880 AT1G51990.1 32.288 319 200 9 44 352 50 362 4.35e-42 150
Msa0554880 AT3G53140.1 32.500 320 202 8 30 337 27 344 3.37e-41 148
Msa0554880 AT1G77520.1 27.731 357 225 9 4 338 22 367 1.90e-36 135
Msa0554880 AT1G33030.1 30.000 320 209 9 30 338 21 336 2.77e-33 127
Msa0554880 AT1G63140.2 31.564 358 212 13 16 350 32 379 2.12e-32 125
Msa0554880 AT1G63140.4 31.564 358 212 13 16 350 52 399 3.29e-32 125
Msa0554880 AT1G21130.1 28.440 327 207 9 30 337 40 358 1.39e-31 122
Msa0554880 AT1G76790.1 28.528 326 202 8 30 333 30 346 4.02e-31 121
Msa0554880 AT1G21100.1 28.135 327 208 9 30 337 40 358 6.28e-31 120
Msa0554880 AT1G21110.1 28.086 324 206 10 30 334 40 355 1.14e-29 117
Msa0554880 AT5G53810.1 27.485 342 224 7 30 351 40 377 3.08e-29 116
Msa0554880 AT5G37170.2 35.000 200 116 7 158 349 38 231 7.78e-29 112
Msa0554880 AT1G21120.1 27.829 327 209 10 30 337 40 358 8.00e-29 115
Msa0554880 AT5G37170.1 35.000 200 116 7 158 349 138 331 1.62e-28 113
Msa0554880 AT1G21120.2 27.744 328 210 10 30 338 88 407 1.85e-28 115
Msa0554880 AT5G37170.3 35.714 182 107 6 176 349 4 183 9.18e-28 107
Msa0554880 AT1G77530.1 29.326 341 218 8 11 333 27 362 2.56e-27 111
Msa0554880 AT1G62900.1 37.629 194 108 6 164 350 16 203 2.95e-25 101
Msa0554880 AT1G33030.2 27.966 236 156 9 30 255 21 252 7.73e-14 71.2
Msa0554880 AT1G33030.3 27.119 236 158 8 30 255 21 252 1.22e-13 70.9
Msa0554880 AT1G63140.1 30.483 269 156 11 6 255 46 302 4.41e-13 69.7

Find 89 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTCAATTGCACATTTA+AGG 0.108406 4_1:-52626073 None:intergenic
AAAATAACGGTGTTGCATTT+TGG 0.123987 4_1:+52626414 Msa0554880:CDS
GAATTTATGCTTTAAGATTT+TGG 0.158961 4_1:-52627735 None:intergenic
CATGGTATCAACTTTCTAAT+TGG 0.214803 4_1:+52626357 Msa0554880:CDS
AGCACAATTGTTCTATGATT+TGG 0.221525 4_1:+52627332 Msa0554880:CDS
TGAACAAATTATTGTGATTA+GGG 0.236770 4_1:-52626454 None:intergenic
CAATTCAATTGCACATTTAA+GGG 0.288826 4_1:-52626072 None:intergenic
AATACAATGCACTCAATGTT+TGG 0.294021 4_1:-52626617 None:intergenic
TTGAACAAATTATTGTGATT+AGG 0.297769 4_1:-52626455 None:intergenic
CAAACTTACAGAGTACAAAA+AGG 0.311906 4_1:-52627590 None:intergenic
CAATTACTAGTACTGGTACT+AGG 0.343088 4_1:-52627484 None:intergenic
GATCTTCCACATGTTGTTGA+TGG 0.360459 4_1:+52626641 Msa0554880:CDS
TTGAAGTGCTTCACACTATA+AGG 0.361244 4_1:+52627504 Msa0554880:three_prime_UTR
TGCAACATGATCTTCACTTT+GGG 0.361816 4_1:-52625988 None:intergenic
CCAGTGTATTCTCTGATTGT+TGG 0.375578 4_1:+52627528 Msa0554880:three_prime_UTR
CATGTTGTTGATGGCTTACA+AGG 0.376283 4_1:+52626650 Msa0554880:CDS
TGCATCTAGATTATTGCTTA+AGG 0.382421 4_1:+52626274 Msa0554880:CDS
TAAAGGGGTGTTTGAAGGAT+TGG 0.402290 4_1:+52626532 Msa0554880:CDS
CCAGATGTTATACACAACTA+TGG 0.417598 4_1:+52626101 Msa0554880:CDS
TGAAAATGTGGTTGAATACT+TGG 0.417805 4_1:-52626031 None:intergenic
TTGCAACATGATCTTCACTT+TGG 0.418082 4_1:-52625989 None:intergenic
GTTTGAAGGATTGGAATCAT+TGG 0.419856 4_1:+52626541 Msa0554880:CDS
TACCATGGTTTACTCAAAAC+CGG 0.422617 4_1:-52626341 None:intergenic
ATACAATGCACTCAATGTTT+GGG 0.429620 4_1:-52626616 None:intergenic
AGTGAAAACTTAAAATATGT+TGG 0.443663 4_1:+52626674 Msa0554880:CDS
TATGGCTTGTGAAACTAGAT+TGG 0.445009 4_1:+52626484 Msa0554880:CDS
TAACATAGATGTCATGCTAA+AGG 0.452511 4_1:-52626303 None:intergenic
GTTCTATGATTTGGAGATGA+TGG 0.453028 4_1:+52627341 Msa0554880:CDS
CTACCTTGAGTAAAATTGAA+TGG 0.457108 4_1:-52626727 None:intergenic
GTGTAACCCGTGCCGATGCA+CGG 0.458308 4_1:+52627675 Msa0554880:three_prime_UTR
CCATAGTTGTGTATAACATC+TGG 0.459982 4_1:-52626101 None:intergenic
GTTGATGTTGGTGGAGGCAT+AGG 0.464053 4_1:+52626563 Msa0554880:CDS
CCAATCCACCCTTCTAAAAC+CGG 0.467765 4_1:+52626161 Msa0554880:CDS
GAGATGATGGTGTTGGTCAA+TGG 0.468447 4_1:+52627354 Msa0554880:CDS
AATTATTGTGATTAGGGTCA+TGG 0.475174 4_1:-52626448 None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG 0.475412 4_1:+52627379 Msa0554880:CDS
TACCTTGAGTAAAATTGAAT+GGG 0.480602 4_1:-52626726 None:intergenic
TTGTGATGGGAAAGTGTAAA+GGG 0.481829 4_1:+52626516 Msa0554880:CDS
TAATTTGTTCAATGAAGCTA+TGG 0.484158 4_1:+52626466 Msa0554880:CDS
AACATAGATGTCATGCTAAA+GGG 0.491147 4_1:-52626302 None:intergenic
AAGTGTAAAGGGGTGTTTGA+AGG 0.495522 4_1:+52626527 Msa0554880:CDS
AATTACTAGTACTGGTACTA+GGG 0.499071 4_1:-52627483 None:intergenic
AGCACTTCAATTACTAGTAC+TGG 0.500351 4_1:-52627491 None:intergenic
GTCAACCCGTGCATCGGCAC+GGG 0.504902 4_1:-52627681 None:intergenic
TTGGAATCATTGGTTGATGT+TGG 0.505871 4_1:+52626551 Msa0554880:CDS
CTGAACCGGTGTGACAGTTA+CGG 0.509380 4_1:+52627703 Msa0554880:three_prime_UTR
TACAAGATAACTCATGGTCT+TGG 0.510347 4_1:+52627435 Msa0554880:CDS
GTTACATGTCATACATGGTC+CGG 0.511183 4_1:+52626322 Msa0554880:CDS
AGGAAGCAATAAGGAGCAAA+GGG 0.515933 4_1:+52627250 Msa0554880:CDS
TTGATGTTGGTGGAGGCATA+GGG 0.518405 4_1:+52626564 Msa0554880:CDS
TCTTCACTTTGGGATCCCAT+TGG 0.518428 4_1:-52625978 None:intergenic
ATTGGCTTCTAGTGTTGTGA+TGG 0.519792 4_1:+52626502 Msa0554880:CDS
GAATCATTGGTTGATGTTGG+TGG 0.520300 4_1:+52626554 Msa0554880:CDS
AGGCATAGGGACTATTACTA+AGG 0.522501 4_1:+52626577 Msa0554880:CDS
GATGCACGGGTTGACTGAAC+CGG 0.525870 4_1:+52627689 Msa0554880:three_prime_UTR
AGTCAACCCGTGCATCGGCA+CGG 0.525999 4_1:-52627682 None:intergenic
GTTGAGGAATCAAAACCAAT+GGG 0.529523 4_1:+52625963 Msa0554880:exon
AAGGGAATAAAACACACAAT+CGG 0.535218 4_1:-52627571 None:intergenic
AGTAAAATTGAATGGGTAGG+AGG 0.536012 4_1:-52626719 None:intergenic
TGAAGGGTGTATTACATGAC+TGG 0.541126 4_1:+52627190 Msa0554880:intron
AGTTGAGGAATCAAAACCAA+TGG 0.547437 4_1:+52625962 Msa0554880:exon
TGTAACCCGTGCCGATGCAC+GGG 0.557705 4_1:+52627676 Msa0554880:three_prime_UTR
GATAATCATAGACGCAGTGA+TGG 0.557902 4_1:+52627278 Msa0554880:CDS
AGTAACTACAAGATAACTCA+TGG 0.563555 4_1:+52627429 Msa0554880:CDS
GAAAACTTAAAATATGTTGG+AGG 0.568473 4_1:+52626677 Msa0554880:CDS
ATAATCATAGACGCAGTGAT+GGG 0.569255 4_1:+52627279 Msa0554880:CDS
AGTTTATGAAACTGAAAATG+TGG 0.571931 4_1:-52626043 None:intergenic
CGCAGTGATGGGGAATGAGA+AGG 0.578489 4_1:+52627290 Msa0554880:CDS
TTTCTGTGTGAAAAGGTGAA+GGG 0.585518 4_1:-52626394 None:intergenic
AAGGAAGCAATAAGGAGCAA+AGG 0.587760 4_1:+52627249 Msa0554880:CDS
TATCGTCTCTATTTGTTGTG+AGG 0.588566 4_1:-52625940 None:intergenic
GGTTCAGTCAACCCGTGCAT+CGG 0.589626 4_1:-52627687 None:intergenic
TCATTGGTTGATGTTGGTGG+AGG 0.592377 4_1:+52626557 Msa0554880:CDS
TTGAGTAAAATTGAATGGGT+AGG 0.594723 4_1:-52626722 None:intergenic
CAATTAGAAAGTTGATACCA+TGG 0.598930 4_1:-52626356 None:intergenic
GAAAATGTGGTTGAATACTT+GGG 0.602349 4_1:-52626030 None:intergenic
GTTGTGATGGGAAAGTGTAA+AGG 0.606315 4_1:+52626515 Msa0554880:CDS
TGATTTGGAGATGATGGTGT+TGG 0.610739 4_1:+52627347 Msa0554880:CDS
TGTAAGCCATCAACAACATG+TGG 0.632178 4_1:-52626647 None:intergenic
TAGATGTCATGCTAAAGGGA+TGG 0.635207 4_1:-52626298 None:intergenic
TCTATGTTACATGTCATACA+TGG 0.641412 4_1:+52626317 Msa0554880:CDS
TTGGCTTCTAGTGTTGTGAT+GGG 0.642008 4_1:+52626503 Msa0554880:CDS
CATCAAACGATATATGTCAC+CGG 0.644449 4_1:-52626180 None:intergenic
TAATCATAGACGCAGTGATG+GGG 0.654303 4_1:+52627280 Msa0554880:CDS
ACAAATAGAGACGATAGTTG+AGG 0.654503 4_1:+52625947 Msa0554880:five_prime_UTR
TGTGATGGGAAAGTGTAAAG+GGG 0.694075 4_1:+52626517 Msa0554880:CDS
ATTACATGACTGGAACGATG+AGG 0.712908 4_1:+52627200 Msa0554880:CDS
CCAACAATCAGAGAATACAC+TGG 0.713575 4_1:-52627528 None:intergenic
TTAGTCCGTAACTGTCACAC+CGG 0.732730 4_1:-52627708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_1:52626800-52626819 Msa0554880:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_1:52626906-52626925 Msa0554880:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_1:52626907-52626926 Msa0554880:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_1:52627017-52627036 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_1:52627093-52627112 Msa0554880:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_1:52627094-52627113 Msa0554880:intron 10.0%
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_1:52626800-52626819 Msa0554880:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_1:52626906-52626925 Msa0554880:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_1:52626907-52626926 Msa0554880:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_1:52627017-52627036 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_1:52627093-52627112 Msa0554880:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_1:52627094-52627113 Msa0554880:intron 10.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_1:52627613-52627632 Msa0554880:three_prime_UTR 15.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_1:52627613-52627632 Msa0554880:three_prime_UTR 15.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_1:52626457-52626476 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_1:52626458-52626477 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_1:52626674-52626693 Msa0554880:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_1:52626781-52626800 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_1:52627173-52627192 Msa0554880:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_1:52627174-52627193 Msa0554880:intron 20.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_1:52626457-52626476 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_1:52626458-52626477 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_1:52626674-52626693 Msa0554880:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_1:52626781-52626800 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_1:52627173-52627192 Msa0554880:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_1:52627174-52627193 Msa0554880:intron 20.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_1:52626046-52626065 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_1:52626075-52626094 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_1:52626076-52626095 None:intergenic 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_1:52626466-52626485 Msa0554880:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_1:52626677-52626696 Msa0554880:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_1:52626729-52626748 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_1:52627106-52627125 Msa0554880:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_1:52627230-52627249 Msa0554880:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_1:52627592-52627611 None:intergenic 25.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_1:52626046-52626065 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_1:52626075-52626094 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_1:52626076-52626095 None:intergenic 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_1:52626466-52626485 Msa0554880:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_1:52626677-52626696 Msa0554880:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_1:52626729-52626748 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_1:52627106-52627125 Msa0554880:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_1:52627230-52627249 Msa0554880:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_1:52627592-52627611 None:intergenic 25.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_1:52626033-52626052 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_1:52626034-52626053 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_1:52626136-52626155 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_1:52626137-52626156 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_1:52626274-52626293 Msa0554880:CDS 30.0%
AACATAGATGTCATGCTAAA+GGG - chr4_1:52626305-52626324 None:intergenic 30.0%
TAACATAGATGTCATGCTAA+AGG - chr4_1:52626306-52626325 None:intergenic 30.0%
TCTATGTTACATGTCATACA+TGG + chr4_1:52626317-52626336 Msa0554880:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_1:52626359-52626378 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_1:52626357-52626376 Msa0554880:CDS 30.0%
! CCTTTTCACACAGAAAATAA+CGG + chr4_1:52626401-52626420 Msa0554880:CDS 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_1:52626414-52626433 Msa0554880:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_1:52626415-52626434 Msa0554880:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_1:52626451-52626470 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_1:52626619-52626638 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_1:52626620-52626639 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_1:52626725-52626744 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_1:52626724-52626743 Msa0554880:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_1:52626730-52626749 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_1:52626883-52626902 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_1:52626884-52626903 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_1:52626927-52626946 Msa0554880:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_1:52627241-52627260 Msa0554880:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_1:52627332-52627351 Msa0554880:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_1:52627379-52627398 Msa0554880:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_1:52627429-52627448 Msa0554880:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_1:52627486-52627505 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_1:52627574-52627593 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_1:52627593-52627612 None:intergenic 30.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_1:52626033-52626052 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_1:52626034-52626053 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_1:52626136-52626155 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_1:52626137-52626156 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_1:52626274-52626293 Msa0554880:CDS 30.0%
AACATAGATGTCATGCTAAA+GGG - chr4_1:52626305-52626324 None:intergenic 30.0%
TAACATAGATGTCATGCTAA+AGG - chr4_1:52626306-52626325 None:intergenic 30.0%
TCTATGTTACATGTCATACA+TGG + chr4_1:52626317-52626336 Msa0554880:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_1:52626359-52626378 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_1:52626357-52626376 Msa0554880:CDS 30.0%
! CCTTTTCACACAGAAAATAA+CGG + chr4_1:52626401-52626420 Msa0554880:CDS 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_1:52626414-52626433 Msa0554880:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_1:52626415-52626434 Msa0554880:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_1:52626451-52626470 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_1:52626619-52626638 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_1:52626620-52626639 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_1:52626725-52626744 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_1:52626724-52626743 Msa0554880:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_1:52626730-52626749 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_1:52626883-52626902 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_1:52626884-52626903 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_1:52626927-52626946 Msa0554880:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_1:52627241-52627260 Msa0554880:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_1:52627332-52627351 Msa0554880:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_1:52627379-52627398 Msa0554880:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_1:52627429-52627448 Msa0554880:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_1:52627486-52627505 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_1:52627574-52627593 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_1:52627593-52627612 None:intergenic 30.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_1:52625943-52625962 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_1:52625947-52625966 Msa0554880:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_1:52625962-52625981 Msa0554880:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_1:52625963-52625982 Msa0554880:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_1:52625991-52626010 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_1:52625992-52626011 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_1:52626104-52626123 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_1:52626101-52626120 Msa0554880:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_1:52626172-52626191 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_1:52626173-52626192 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_1:52626183-52626202 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_1:52626200-52626219 Msa0554880:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_1:52626344-52626363 None:intergenic 35.0%
TTTCTGTGTGAAAAGGTGAA+GGG - chr4_1:52626397-52626416 None:intergenic 35.0%
! TTTTCTGTGTGAAAAGGTGA+AGG - chr4_1:52626398-52626417 None:intergenic 35.0%
!! CCGTTATTTTCTGTGTGAAA+AGG - chr4_1:52626404-52626423 None:intergenic 35.0%
! TATGGCTTGTGAAACTAGAT+TGG + chr4_1:52626484-52626503 Msa0554880:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_1:52626516-52626535 Msa0554880:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_1:52626541-52626560 Msa0554880:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_1:52626551-52626570 Msa0554880:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_1:52626722-52626741 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_1:52627279-52627298 Msa0554880:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_1:52627341-52627360 Msa0554880:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_1:52627435-52627454 Msa0554880:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_1:52627455-52627474 Msa0554880:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_1:52627487-52627506 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_1:52627494-52627513 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_1:52627504-52627523 Msa0554880:three_prime_UTR 35.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_1:52625943-52625962 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_1:52625947-52625966 Msa0554880:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_1:52625962-52625981 Msa0554880:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_1:52625963-52625982 Msa0554880:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_1:52625991-52626010 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_1:52625992-52626011 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_1:52626104-52626123 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_1:52626101-52626120 Msa0554880:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_1:52626172-52626191 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_1:52626173-52626192 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_1:52626183-52626202 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_1:52626200-52626219 Msa0554880:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_1:52626344-52626363 None:intergenic 35.0%
TTTCTGTGTGAAAAGGTGAA+GGG - chr4_1:52626397-52626416 None:intergenic 35.0%
! TTTTCTGTGTGAAAAGGTGA+AGG - chr4_1:52626398-52626417 None:intergenic 35.0%
!! CCGTTATTTTCTGTGTGAAA+AGG - chr4_1:52626404-52626423 None:intergenic 35.0%
! TATGGCTTGTGAAACTAGAT+TGG + chr4_1:52626484-52626503 Msa0554880:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_1:52626516-52626535 Msa0554880:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_1:52626541-52626560 Msa0554880:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_1:52626551-52626570 Msa0554880:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_1:52626722-52626741 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_1:52627279-52627298 Msa0554880:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_1:52627341-52627360 Msa0554880:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_1:52627435-52627454 Msa0554880:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_1:52627455-52627474 Msa0554880:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_1:52627487-52627506 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_1:52627494-52627513 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_1:52627504-52627523 Msa0554880:three_prime_UTR 35.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_1:52626131-52626150 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_1:52626301-52626320 None:intergenic 40.0%
GTTACATGTCATACATGGTC+CGG + chr4_1:52626322-52626341 Msa0554880:CDS 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_1:52626502-52626521 Msa0554880:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_1:52626503-52626522 Msa0554880:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_1:52626515-52626534 Msa0554880:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_1:52626517-52626536 Msa0554880:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_1:52626527-52626546 Msa0554880:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_1:52626532-52626551 Msa0554880:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_1:52626554-52626573 Msa0554880:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_1:52626577-52626596 Msa0554880:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_1:52626641-52626660 Msa0554880:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_1:52626650-52626669 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_1:52626650-52626669 Msa0554880:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_1:52627190-52627209 Msa0554880:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_1:52627200-52627219 Msa0554880:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_1:52627249-52627268 Msa0554880:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_1:52627250-52627269 Msa0554880:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_1:52627278-52627297 Msa0554880:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_1:52627280-52627299 Msa0554880:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_1:52627347-52627366 Msa0554880:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_1:52627402-52627421 Msa0554880:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_1:52627406-52627425 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_1:52627531-52627550 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_1:52627528-52627547 Msa0554880:three_prime_UTR 40.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_1:52626131-52626150 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_1:52626301-52626320 None:intergenic 40.0%
GTTACATGTCATACATGGTC+CGG + chr4_1:52626322-52626341 Msa0554880:CDS 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_1:52626502-52626521 Msa0554880:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_1:52626503-52626522 Msa0554880:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_1:52626515-52626534 Msa0554880:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_1:52626517-52626536 Msa0554880:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_1:52626527-52626546 Msa0554880:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_1:52626532-52626551 Msa0554880:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_1:52626554-52626573 Msa0554880:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_1:52626577-52626596 Msa0554880:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_1:52626641-52626660 Msa0554880:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_1:52626650-52626669 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_1:52626650-52626669 Msa0554880:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_1:52627190-52627209 Msa0554880:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_1:52627200-52627219 Msa0554880:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_1:52627249-52627268 Msa0554880:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_1:52627250-52627269 Msa0554880:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_1:52627278-52627297 Msa0554880:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_1:52627280-52627299 Msa0554880:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_1:52627347-52627366 Msa0554880:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_1:52627402-52627421 Msa0554880:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_1:52627406-52627425 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_1:52627531-52627550 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_1:52627528-52627547 Msa0554880:three_prime_UTR 40.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_1:52625981-52626000 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_1:52626127-52626146 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_1:52626161-52626180 Msa0554880:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_1:52626339-52626358 Msa0554880:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_1:52626557-52626576 Msa0554880:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_1:52626564-52626583 Msa0554880:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_1:52627354-52627373 Msa0554880:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_1:52627711-52627730 None:intergenic 45.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_1:52625981-52626000 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_1:52626127-52626146 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_1:52626161-52626180 Msa0554880:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_1:52626339-52626358 Msa0554880:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_1:52626557-52626576 Msa0554880:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_1:52626564-52626583 Msa0554880:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_1:52627354-52627373 Msa0554880:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_1:52627711-52627730 None:intergenic 45.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_1:52626164-52626183 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_1:52626169-52626188 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_1:52626563-52626582 Msa0554880:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_1:52627703-52627722 Msa0554880:three_prime_UTR 50.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_1:52626164-52626183 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_1:52626169-52626188 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_1:52626563-52626582 Msa0554880:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_1:52627703-52627722 Msa0554880:three_prime_UTR 50.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_1:52627290-52627309 Msa0554880:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_1:52627690-52627709 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_1:52627689-52627708 Msa0554880:three_prime_UTR 55.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_1:52627290-52627309 Msa0554880:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_1:52627690-52627709 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_1:52627689-52627708 Msa0554880:three_prime_UTR 55.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_1:52627675-52627694 Msa0554880:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_1:52627676-52627695 Msa0554880:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_1:52627685-52627704 None:intergenic 60.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_1:52627675-52627694 Msa0554880:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_1:52627676-52627695 Msa0554880:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_1:52627685-52627704 None:intergenic 60.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_1:52627684-52627703 None:intergenic 65.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_1:52627684-52627703 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 52625940 52627747 52625940 ID=Msa0554880;Name=Msa0554880
chr4_1 mRNA 52625940 52627747 52625940 ID=Msa0554880-mRNA-1;Parent=Msa0554880;Name=Msa0554880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=41|1|1|1|1|1|2|259|352
chr4_1 exon 52625940 52626745 52625940 ID=Msa0554880-mRNA-1:exon:15218;Parent=Msa0554880-mRNA-1
chr4_1 exon 52627195 52627747 52627195 ID=Msa0554880-mRNA-1:exon:15219;Parent=Msa0554880-mRNA-1
chr4_1 five_prime_UTR 52625940 52625980 52625940 ID=Msa0554880-mRNA-1:five_prime_utr;Parent=Msa0554880-mRNA-1
chr4_1 CDS 52625981 52626745 52625981 ID=Msa0554880-mRNA-1:cds;Parent=Msa0554880-mRNA-1
chr4_1 CDS 52627195 52627488 52627195 ID=Msa0554880-mRNA-1:cds;Parent=Msa0554880-mRNA-1
chr4_1 three_prime_UTR 52627489 52627747 52627489 ID=Msa0554880-mRNA-1:three_prime_utr;Parent=Msa0554880-mRNA-1
Gene Sequence

>Msa0554880

ATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCCAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGTTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATATAGAAGTGATGTATGAACTTAATGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGCATGACATCTATGTTACATGTCATACATGGTCCGGTTTTGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACAGAAAATAACGGTGTTGCATTTTGGGATTATGCTAGCCATGACCCTAATCACAATAATTTGTTCAATGAAGCTATGGCTTGTGAAACTAGATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTCATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAAGCAATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG
Protein sequence

>Msa0554880

MGSQSEDHVAKLLQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDIEVMYELNDASRLLLKDHPFSMTSMLHVIHGPVLSKPWYQLSNWYKNDDPSPFHTENNGVAFWDYASHDPNHNNLFNEAMACETRLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*