AlfalfaGEDB | Msa0554880

M. sativa cultivar zhongmu-4 / Msa0554880

KEGG: K13262|K16040
GO: GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009812 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030761 GO:0032259 GO:0044237 GO:0044249 GO:0071704
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554880	RHN61806.1	95.775	355	12	1	1	352	15	369	0.0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554880	sp\|B0ZB57\|OMT3_HUMLU	57.778	360	139	4	5	352	19	377	1.71e-147	424

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554880	A0A396I869	95.775	355	12	1	1	352	15	369	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044160	Msa0554880	0.812907	3.347703e-51	-8.615850e-47
Msa0183710	Msa0554880	0.823226	1.552309e-53	-8.615850e-47
Msa0437520	Msa0554880	0.808536	2.950862e-50	-8.615850e-47
Msa0554880	Msa0608460	0.943763	6.679120e-103	-8.615850e-47
Msa0554880	Msa0648970	0.903779	2.436235e-79	-8.615850e-47
Msa0554880	Msa0691490	0.946050	9.656844e-105	-8.615850e-47
Msa0554880	Msa1275160	0.807420	5.099034e-50	-8.615850e-47
Msa0554880	Msa1447100	0.820931	5.283244e-53	-8.615850e-47
Msa0554880	Msa1449900	0.803218	3.870965e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554880	MtrunA17_Chr4g0040621	95.775	355	12	1	1	352	15	369	0.0	701
Msa0554880	MtrunA17_Chr5g0432241	61.773	361	128	5	1	352	1	360	1.32e-161	456
Msa0554880	MtrunA17_Chr5g0432251	61.389	360	130	5	1	352	1	359	1.59e-159	451
Msa0554880	MtrunA17_Chr5g0432301	60.278	360	133	6	1	351	1	359	3.29e-154	437
Msa0554880	MtrunA17_Chr5g0432211	56.944	360	132	6	1	352	1	345	1.98e-140	402
Msa0554880	MtrunA17_Chr5g0432261	56.447	349	118	3	10	352	7	327	3.25e-138	395
Msa0554880	MtrunA17_Chr7g0223241	44.633	354	186	4	1	350	1	348	5.38e-108	320
Msa0554880	MtrunA17_Chr7g0219141	44.571	350	184	5	10	352	11	357	1.48e-107	318
Msa0554880	MtrunA17_Chr7g0223231	43.503	354	190	4	1	350	1	348	1.99e-103	308
Msa0554880	MtrunA17_Chr4g0046361	45.042	353	182	6	10	352	11	361	1.65e-102	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554880	AT4G35150.1	35.057	348	172	9	14	348	14	320	1.39e-62	202
Msa0554880	AT4G35160.1	35.246	366	210	11	6	348	16	377	7.40e-60	197
Msa0554880	AT5G54160.1	32.931	331	209	8	30	351	34	360	1.33e-49	170
Msa0554880	AT1G51990.2	32.288	319	200	9	44	352	50	362	8.24e-43	152
Msa0554880	AT1G51990.1	32.288	319	200	9	44	352	50	362	4.35e-42	150
Msa0554880	AT3G53140.1	32.500	320	202	8	30	337	27	344	3.37e-41	148
Msa0554880	AT1G77520.1	27.731	357	225	9	4	338	22	367	1.90e-36	135
Msa0554880	AT1G33030.1	30.000	320	209	9	30	338	21	336	2.77e-33	127
Msa0554880	AT1G63140.2	31.564	358	212	13	16	350	32	379	2.12e-32	125
Msa0554880	AT1G63140.4	31.564	358	212	13	16	350	52	399	3.29e-32	125

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Find 89 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACGGTGTTGCATTT+TGG	0.123987	4_1:+52626414	Msa0554880:CDS
AACATAGATGTCATGCTAAA+GGG	0.491147	4_1:-52626302	None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG	0.475412	4_1:+52627379	Msa0554880:CDS
AAGGAAGCAATAAGGAGCAA+AGG	0.587760	4_1:+52627249	Msa0554880:CDS
AAGGGAATAAAACACACAAT+CGG	0.535218	4_1:-52627571	None:intergenic
AAGTGTAAAGGGGTGTTTGA+AGG	0.495522	4_1:+52626527	Msa0554880:CDS
AATACAATGCACTCAATGTT+TGG	0.294021	4_1:-52626617	None:intergenic
AATTACTAGTACTGGTACTA+GGG	0.499071	4_1:-52627483	None:intergenic
AATTATTGTGATTAGGGTCA+TGG	0.475174	4_1:-52626448	None:intergenic
ACAAATAGAGACGATAGTTG+AGG	0.654503	4_1:+52625947	Msa0554880:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATGTGGTTGAATACTT+GGG	-	chr4_1:52626033-52626052	None:intergenic	30.0%
TGAAAATGTGGTTGAATACT+TGG	-	chr4_1:52626034-52626053	None:intergenic	30.0%
TGCATCTAGATTATTGCTTA+AGG	+	chr4_1:52626274-52626293	Msa0554880:CDS	30.0%
AACATAGATGTCATGCTAAA+GGG	-	chr4_1:52626305-52626324	None:intergenic	30.0%
TAACATAGATGTCATGCTAA+AGG	-	chr4_1:52626306-52626325	None:intergenic	30.0%
TCTATGTTACATGTCATACA+TGG	+	chr4_1:52626317-52626336	Msa0554880:CDS	30.0%
CATGGTATCAACTTTCTAAT+TGG	+	chr4_1:52626357-52626376	Msa0554880:CDS	30.0%
AATTATTGTGATTAGGGTCA+TGG	-	chr4_1:52626451-52626470	None:intergenic	30.0%
ATACAATGCACTCAATGTTT+GGG	-	chr4_1:52626619-52626638	None:intergenic	30.0%
AATACAATGCACTCAATGTT+TGG	-	chr4_1:52626620-52626639	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	52625940	52627747	52625940	ID=Msa0554880;Name=Msa0554880
chr4_1	mRNA	52625940	52627747	52625940	ID=Msa0554880-mRNA-1;Parent=Msa0554880;Name=Msa0554880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=41\|1\|1\|1\|1\|1\|2\|259\|352
chr4_1	exon	52625940	52626745	52625940	ID=Msa0554880-mRNA-1:exon:15218;Parent=Msa0554880-mRNA-1
chr4_1	exon	52627195	52627747	52627195	ID=Msa0554880-mRNA-1:exon:15219;Parent=Msa0554880-mRNA-1
chr4_1	five_prime_UTR	52625940	52625980	52625940	ID=Msa0554880-mRNA-1:five_prime_utr;Parent=Msa0554880-mRNA-1
chr4_1	CDS	52625981	52626745	52625981	ID=Msa0554880-mRNA-1:cds;Parent=Msa0554880-mRNA-1
chr4_1	CDS	52627195	52627488	52627195	ID=Msa0554880-mRNA-1:cds;Parent=Msa0554880-mRNA-1
chr4_1	three_prime_UTR	52627489	52627747	52627489	ID=Msa0554880-mRNA-1:three_prime_utr;Parent=Msa0554880-mRNA-1

Gene Sequence

>Msa0554880

ATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCCAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGTTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATATAGAAGTGATGTATGAACTTAATGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGCATGACATCTATGTTACATGTCATACATGGTCCGGTTTTGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACAGAAAATAACGGTGTTGCATTTTGGGATTATGCTAGCCATGACCCTAATCACAATAATTTGTTCAATGAAGCTATGGCTTGTGAAACTAGATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTCATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAAGCAATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG

Protein sequence

>Msa0554880

MGSQSEDHVAKLLQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDIEVMYELNDASRLLLKDHPFSMTSMLHVIHGPVLSKPWYQLSNWYKNDDPSPFHTENNGVAFWDYASHDPNHNNLFNEAMACETRLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*