AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648970 MtrunA17_Chr4g0040621 96.338 355 10 1 1 352 15 369 0.0 703
Msa0648970 MtrunA17_Chr5g0432241 62.327 361 126 5 1 352 1 360 5.70e-162 457
Msa0648970 MtrunA17_Chr5g0432251 61.389 360 130 5 1 352 1 359 5.83e-159 449
Msa0648970 MtrunA17_Chr5g0432301 60.556 360 132 6 1 351 1 359 6.14e-154 437
Msa0648970 MtrunA17_Chr5g0432211 57.500 360 130 6 1 352 1 345 6.73e-141 403
Msa0648970 MtrunA17_Chr5g0432261 57.020 349 116 3 10 352 7 327 1.04e-138 397
Msa0648970 MtrunA17_Chr7g0219141 44.857 350 183 5 10 352 11 357 2.14e-107 318
Msa0648970 MtrunA17_Chr7g0223241 44.350 354 187 4 1 350 1 348 1.75e-106 316
Msa0648970 MtrunA17_Chr4g0046361 45.170 352 183 4 10 352 11 361 6.34e-103 307
Msa0648970 MtrunA17_Chr7g0223231 43.220 354 191 4 1 350 1 348 1.06e-101 303
Msa0648970 MtrunA17_Chr4g0014681 46.893 354 176 4 10 352 11 363 2.66e-100 300
Msa0648970 MtrunA17_Chr4g0014561 46.893 354 176 4 10 352 11 363 1.00e-99 299
Msa0648970 MtrunA17_Chr7g0219161 42.319 345 189 5 2 339 3 344 8.32e-99 296
Msa0648970 MtrunA17_Chr4g0046341 45.915 355 179 4 10 352 11 364 1.70e-97 293
Msa0648970 MtrunA17_Chr4g0014641 45.892 353 179 4 11 352 12 363 2.04e-96 290
Msa0648970 MtrunA17_Chr1g0188391 43.017 358 186 8 8 352 9 361 3.52e-96 290
Msa0648970 MtrunA17_Chr4g0046531 42.651 347 194 3 10 352 373 718 8.90e-93 291
Msa0648970 MtrunA17_Chr4g0046531 41.908 346 196 3 10 351 11 355 1.61e-89 283
Msa0648970 MtrunA17_Chr4g0014661 44.540 348 187 3 10 352 11 357 1.62e-88 270
Msa0648970 MtrunA17_Chr1g0188371 41.441 333 180 7 11 332 12 340 7.55e-87 266
Msa0648970 MtrunA17_Chr4g0014591 44.253 348 188 3 10 352 11 357 6.48e-85 261
Msa0648970 MtrunA17_Chr3g0121301 39.252 321 184 7 19 333 27 342 5.36e-68 218
Msa0648970 MtrunA17_Chr4g0021981 36.158 354 202 7 13 352 25 368 2.88e-67 216
Msa0648970 MtrunA17_Chr4g0022021 34.659 352 210 7 13 352 25 368 2.44e-62 203
Msa0648970 MtrunA17_Chr4g0014601 39.044 251 150 2 10 258 11 260 5.56e-60 194
Msa0648970 MtrunA17_Chr7g0276411 34.234 333 188 10 25 337 26 347 9.65e-46 159
Msa0648970 MtrunA17_Chr5g0448091 32.198 323 201 9 30 339 33 350 1.46e-45 159
Msa0648970 MtrunA17_Chr3g0128011 31.928 332 212 9 30 351 88 415 2.09e-44 157
Msa0648970 MtrunA17_Chr7g0219171 54.887 133 56 2 223 352 117 248 7.00e-44 151
Msa0648970 MtrunA17_Chr7g0219171 43.925 107 59 1 10 116 11 116 5.36e-24 99.0
Msa0648970 MtrunA17_Chr7g0276401 31.515 330 198 7 25 337 42 360 2.01e-43 154
Msa0648970 MtrunA17_Chr8g0345851 36.604 265 155 7 93 351 32 289 4.64e-42 148
Msa0648970 MtrunA17_Chr3g0085211 31.627 332 210 9 27 347 38 363 1.28e-41 149
Msa0648970 MtrunA17_Chr1g0163611 30.473 338 219 5 13 339 23 355 5.95e-41 147
Msa0648970 MtrunA17_Chr8g0367441 32.759 290 180 7 46 333 82 358 6.87e-41 147
Msa0648970 MtrunA17_Chr1g0163601 29.882 338 221 5 13 339 23 355 1.11e-40 146
Msa0648970 MtrunA17_Chr7g0218131 31.988 322 199 9 32 339 41 356 1.17e-40 146
Msa0648970 MtrunA17_Chr7g0218301 29.752 363 229 9 1 339 1 361 1.83e-40 146
Msa0648970 MtrunA17_Chr1g0200491 29.261 352 221 11 4 339 19 358 3.18e-40 145
Msa0648970 MtrunA17_Chr7g0218271 28.926 363 232 9 1 339 1 361 2.20e-39 143
Msa0648970 MtrunA17_Chr8g0367501 31.287 342 212 7 23 352 25 355 2.97e-39 144
Msa0648970 MtrunA17_Chr8g0367451 32.530 332 197 8 25 337 40 363 4.45e-39 142
Msa0648970 MtrunA17_Chr7g0218181 28.529 333 214 8 12 339 40 353 4.00e-38 139
Msa0648970 MtrunA17_Chr8g0367491 30.606 330 204 7 25 337 40 361 1.39e-37 138
Msa0648970 MtrunA17_Chr3g0085201 30.484 351 227 10 6 347 8 350 2.28e-37 137
Msa0648970 MtrunA17_Chr7g0218211 30.435 322 202 10 32 338 40 354 2.47e-37 137
Msa0648970 MtrunA17_Chr2g0314271 30.769 338 221 7 14 340 7 342 3.32e-37 137
Msa0648970 MtrunA17_Chr2g0307521 36.269 193 118 3 147 337 158 347 6.94e-37 136
Msa0648970 MtrunA17_Chr7g0218261 29.338 317 213 7 32 339 40 354 1.38e-36 135
Msa0648970 MtrunA17_Chr1g0163621 29.586 338 222 5 13 339 37 369 8.17e-35 131
Msa0648970 MtrunA17_Chr8g0367381 39.306 173 103 2 148 319 154 325 2.79e-34 128
Msa0648970 MtrunA17_Chr3g0130011 28.406 345 229 8 4 340 12 346 4.95e-34 128
Msa0648970 MtrunA17_Chr3g0130061 29.107 347 226 10 3 340 11 346 4.02e-33 126
Msa0648970 MtrunA17_Chr6g0482291 33.939 165 97 3 177 337 5 161 2.96e-24 97.8
Msa0648970 MtrunA17_Chr8g0367401 40.367 109 64 1 147 255 3 110 4.14e-20 85.5
Msa0648970 MtrunA17_Chr4g0014611 56.566 99 40 1 257 352 9 107 9.91e-19 80.5
Msa0648970 MtrunA17_Chr4g0014671 55.238 105 44 1 251 352 30 134 3.65e-16 74.3
Msa0648970 MtrunA17_Chr8g0367461 37.113 97 60 1 242 337 1 97 3.46e-15 70.9
Msa0648970 MtrunA17_Chr8g0367421 33.945 109 54 2 147 255 3 93 2.98e-13 65.9
Msa0648970 MtrunA17_Chr4g0011691 49.367 79 37 3 257 333 140 217 4.10e-13 68.2
Msa0648970 MtrunA17_Chr1g0170941 45.455 66 36 0 188 253 11 76 7.31e-12 60.5
Msa0648970 MtrunA17_Chr8g0367391 40.476 84 49 1 255 337 36 119 8.35e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648970 AT4G35150.1 35.345 348 171 9 14 348 14 320 1.17e-61 200
Msa0648970 AT4G35160.1 35.519 366 209 11 6 348 16 377 5.26e-60 198
Msa0648970 AT5G54160.1 33.233 331 208 8 30 351 34 360 1.55e-48 167
Msa0648970 AT1G51990.1 32.492 317 198 9 46 352 52 362 4.05e-42 150
Msa0648970 AT1G51990.2 32.177 317 199 9 46 352 52 362 2.02e-41 149
Msa0648970 AT3G53140.1 31.627 332 213 8 30 349 27 356 9.61e-40 144
Msa0648970 AT1G77520.1 27.171 357 227 9 4 338 22 367 1.88e-34 130
Msa0648970 AT1G21130.1 28.746 327 206 9 30 337 40 358 1.03e-32 125
Msa0648970 AT1G33030.1 30.000 320 209 9 30 338 21 336 1.36e-32 125
Msa0648970 AT1G63140.2 31.844 358 211 13 16 350 32 379 1.47e-32 125
Msa0648970 AT1G63140.4 31.844 358 211 13 16 350 52 399 1.73e-32 125
Msa0648970 AT1G21100.1 28.440 327 207 9 30 337 40 358 3.56e-32 124
Msa0648970 AT1G76790.1 28.528 326 202 8 30 333 30 346 1.34e-31 122
Msa0648970 AT1G21110.1 28.395 324 205 10 30 334 40 355 1.26e-30 120
Msa0648970 AT5G53810.1 27.778 342 223 7 30 351 40 377 7.81e-30 118
Msa0648970 AT1G21120.1 28.135 327 208 10 30 337 40 358 9.40e-30 117
Msa0648970 AT1G21120.2 28.049 328 209 10 30 338 88 407 2.21e-29 117
Msa0648970 AT5G37170.2 35.000 200 116 7 158 349 38 231 7.09e-29 112
Msa0648970 AT5G37170.1 35.000 200 116 7 158 349 138 331 1.46e-28 113
Msa0648970 AT5G37170.3 35.714 182 107 6 176 349 4 183 8.45e-28 107
Msa0648970 AT1G77530.1 29.032 341 219 8 11 333 27 362 1.62e-26 108
Msa0648970 AT1G62900.1 35.922 206 119 6 152 350 4 203 7.29e-26 103
Msa0648970 AT1G63140.1 30.855 269 155 11 6 255 46 302 2.74e-13 70.1
Msa0648970 AT1G33030.2 27.966 236 156 9 30 255 21 252 2.85e-13 69.3
Msa0648970 AT1G33030.3 27.119 236 158 8 30 255 21 252 5.71e-13 68.9

Find 89 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTCAATTGCACATTTA+AGG 0.108406 4_3:-55580341 None:intergenic
AAAATAACGGTGTTGCATTT+TGG 0.128208 4_3:+55580682 Msa0648970:CDS
GAATTTATGCTTTAAGATTT+TGG 0.158961 4_3:-55582003 None:intergenic
AGCACAATTGTTCTATGATT+TGG 0.221525 4_3:+55581600 Msa0648970:CDS
CATGGTGTCAACTTTCTAAT+TGG 0.222939 4_3:+55580625 Msa0648970:CDS
TGAACAAATTATTGTGATTA+GGG 0.236770 4_3:-55580722 None:intergenic
CAAACTTAGGGAGTACAAAA+AGG 0.267431 4_3:-55581858 None:intergenic
CAATTCAATTGCACATTTAA+GGG 0.288826 4_3:-55580340 None:intergenic
AATACAATGCACTCAATGTT+TGG 0.294021 4_3:-55580885 None:intergenic
TTGAACAAATTATTGTGATT+AGG 0.297769 4_3:-55580723 None:intergenic
CAATTACTAGTACTGGTACT+AGG 0.343088 4_3:-55581752 None:intergenic
GATCTTCCACATGTTGTTGA+TGG 0.360459 4_3:+55580909 Msa0648970:CDS
TTGAAGTGCTTCACACTATA+AGG 0.361244 4_3:+55581772 Msa0648970:three_prime_UTR
TGCAACATGATCTTCACTTT+GGG 0.361816 4_3:-55580256 None:intergenic
CCAGTGTATTCTCTGATTGT+TGG 0.375578 4_3:+55581796 Msa0648970:three_prime_UTR
CATGTTGTTGATGGCTTACA+AGG 0.376283 4_3:+55580918 Msa0648970:CDS
TGCATCTAGATTATTGCTTA+AGG 0.382421 4_3:+55580542 Msa0648970:CDS
CACCATGGTTTACTCAGAAC+TGG 0.397423 4_3:-55580609 None:intergenic
TAAAGGGGTGTTTGAAGGAT+TGG 0.402290 4_3:+55580800 Msa0648970:CDS
CCAGATGTTATACACAACTA+TGG 0.417598 4_3:+55580369 Msa0648970:CDS
TGAAAATGTGGTTGAATACT+TGG 0.417805 4_3:-55580299 None:intergenic
TTGCAACATGATCTTCACTT+TGG 0.418082 4_3:-55580257 None:intergenic
GTTTGAAGGATTGGAATCAT+TGG 0.419856 4_3:+55580809 Msa0648970:CDS
ATACAATGCACTCAATGTTT+GGG 0.429620 4_3:-55580884 None:intergenic
AGTGAAAACTTAAAATATGT+TGG 0.443663 4_3:+55580942 Msa0648970:CDS
GTTCTATGATTTGGAGATGA+TGG 0.453028 4_3:+55581609 Msa0648970:CDS
TATGGCTTGTGAAACAAGAT+TGG 0.456549 4_3:+55580752 Msa0648970:CDS
CTACCTTGAGTAAAATTGAA+TGG 0.457108 4_3:-55580995 None:intergenic
GTGTAACCCGTGCCGATGCA+CGG 0.458308 4_3:+55581943 Msa0648970:three_prime_UTR
CCATAGTTGTGTATAACATC+TGG 0.459982 4_3:-55580369 None:intergenic
AACATAGATGTCATACTAAA+GGG 0.460641 4_3:-55580570 None:intergenic
GTTGATGTTGGTGGAGGCAT+AGG 0.464053 4_3:+55580831 Msa0648970:CDS
CCAATCCACCCTTCTAAAAC+CGG 0.467765 4_3:+55580429 Msa0648970:CDS
GAGATGATGGTGTTGGTCAA+TGG 0.468447 4_3:+55581622 Msa0648970:CDS
CAACATAGATGTCATACTAA+AGG 0.471280 4_3:-55580571 None:intergenic
AATTATTGTGATTAGGGTCA+TGG 0.475174 4_3:-55580716 None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG 0.475412 4_3:+55581647 Msa0648970:CDS
TACCTTGAGTAAAATTGAAT+GGG 0.480602 4_3:-55580994 None:intergenic
TTGTGATGGGAAAGTGTAAA+GGG 0.481829 4_3:+55580784 Msa0648970:CDS
TAATTTGTTCAATGAAGCTA+TGG 0.484158 4_3:+55580734 Msa0648970:CDS
AAGTGTAAAGGGGTGTTTGA+AGG 0.495522 4_3:+55580795 Msa0648970:CDS
AATTACTAGTACTGGTACTA+GGG 0.499071 4_3:-55581751 None:intergenic
AGCACTTCAATTACTAGTAC+TGG 0.500351 4_3:-55581759 None:intergenic
GTCAACCCGTGCATCGGCAC+GGG 0.504902 4_3:-55581949 None:intergenic
TTGGAATCATTGGTTGATGT+TGG 0.505871 4_3:+55580819 Msa0648970:CDS
TCTATGTTGCATGTCATACT+TGG 0.507881 4_3:+55580585 Msa0648970:CDS
CTGAACCGGTGTGACAGTTA+CGG 0.509380 4_3:+55581971 Msa0648970:three_prime_UTR
TACAAGATAACTCATGGTCT+TGG 0.510347 4_3:+55581703 Msa0648970:CDS
AGGCATAGGGACTATTACTA+AGG 0.514166 4_3:+55580845 Msa0648970:CDS
AGGAAGCAATAAGGAGCAAA+GGG 0.515933 4_3:+55581518 Msa0648970:CDS
TTGATGTTGGTGGAGGCATA+GGG 0.518405 4_3:+55580832 Msa0648970:CDS
TCTTCACTTTGGGATCCCAT+TGG 0.518428 4_3:-55580246 None:intergenic
GAATCATTGGTTGATGTTGG+TGG 0.520300 4_3:+55580822 Msa0648970:CDS
GATGCACGGGTTGACTGAAC+CGG 0.525870 4_3:+55581957 Msa0648970:three_prime_UTR
AGTCAACCCGTGCATCGGCA+CGG 0.525999 4_3:-55581950 None:intergenic
GTTGAGGAATCAAAACCAAT+GGG 0.529523 4_3:+55580231 Msa0648970:exon
AAGGGAATAAAACACACAAT+CGG 0.535218 4_3:-55581839 None:intergenic
AGTAAAATTGAATGGGTAGG+AGG 0.536012 4_3:-55580987 None:intergenic
TGAAGGGTGTATTACATGAC+TGG 0.541126 4_3:+55581458 Msa0648970:intron
AGTTGAGGAATCAAAACCAA+TGG 0.547437 4_3:+55580230 Msa0648970:exon
TGTAACCCGTGCCGATGCAC+GGG 0.557705 4_3:+55581944 Msa0648970:three_prime_UTR
GATAATCATAGACGCAGTGA+TGG 0.557902 4_3:+55581546 Msa0648970:CDS
AGTAACTACAAGATAACTCA+TGG 0.563555 4_3:+55581697 Msa0648970:CDS
GAAAACTTAAAATATGTTGG+AGG 0.568473 4_3:+55580945 Msa0648970:CDS
ATAATCATAGACGCAGTGAT+GGG 0.569255 4_3:+55581547 Msa0648970:CDS
AGTTTATGAAACTGAAAATG+TGG 0.571931 4_3:-55580311 None:intergenic
CGCAGTGATGGGGAATGAGA+AGG 0.578489 4_3:+55581558 Msa0648970:CDS
ATTGGCTTCTAGTGTTGTGA+TGG 0.581687 4_3:+55580770 Msa0648970:CDS
AAGGAAGCAATAAGGAGCAA+AGG 0.587760 4_3:+55581517 Msa0648970:CDS
TATCGTCTCTATTTGTTGTG+AGG 0.588566 4_3:-55580208 None:intergenic
GGTTCAGTCAACCCGTGCAT+CGG 0.589626 4_3:-55581955 None:intergenic
TCATTGGTTGATGTTGGTGG+AGG 0.592377 4_3:+55580825 Msa0648970:CDS
TTGAGTAAAATTGAATGGGT+AGG 0.594723 4_3:-55580990 None:intergenic
TTTCCGTGTGAAAAGGTGAA+GGG 0.595347 4_3:-55580662 None:intergenic
GAAAATGTGGTTGAATACTT+GGG 0.602349 4_3:-55580298 None:intergenic
GTTGTGATGGGAAAGTGTAA+AGG 0.606315 4_3:+55580783 Msa0648970:CDS
TGATTTGGAGATGATGGTGT+TGG 0.610739 4_3:+55581615 Msa0648970:CDS
TGTAAGCCATCAACAACATG+TGG 0.632178 4_3:-55580915 None:intergenic
TAGATGTCATACTAAAGGGA+TGG 0.642155 4_3:-55580566 None:intergenic
CAATTAGAAAGTTGACACCA+TGG 0.642868 4_3:-55580624 None:intergenic
CATCAAGCGATATATGTCAC+CGG 0.647643 4_3:-55580448 None:intergenic
TTGGCTTCTAGTGTTGTGAT+GGG 0.650343 4_3:+55580771 Msa0648970:CDS
TAATCATAGACGCAGTGATG+GGG 0.654303 4_3:+55581548 Msa0648970:CDS
ACAAATAGAGACGATAGTTG+AGG 0.654503 4_3:+55580215 Msa0648970:five_prime_UTR
GTCCAGTTCTGAGTAAACCA+TGG 0.675739 4_3:+55580607 Msa0648970:CDS
TGTGATGGGAAAGTGTAAAG+GGG 0.694075 4_3:+55580785 Msa0648970:CDS
ATTACATGACTGGAACGATG+AGG 0.712908 4_3:+55581468 Msa0648970:CDS
CCAACAATCAGAGAATACAC+TGG 0.713575 4_3:-55581796 None:intergenic
TTAGTCCGTAACTGTCACAC+CGG 0.732730 4_3:-55581976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_3:55581068-55581087 Msa0648970:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_3:55581174-55581193 Msa0648970:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_3:55581175-55581194 Msa0648970:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_3:55581285-55581304 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_3:55581361-55581380 Msa0648970:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_3:55581362-55581381 Msa0648970:intron 10.0%
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_3:55581068-55581087 Msa0648970:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_3:55581174-55581193 Msa0648970:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_3:55581175-55581194 Msa0648970:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_3:55581285-55581304 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_3:55581361-55581380 Msa0648970:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_3:55581362-55581381 Msa0648970:intron 10.0%
!! TAAAAAATAACACAAACTTA+GGG - chr4_3:55581873-55581892 None:intergenic 15.0%
!! ATAAAAAATAACACAAACTT+AGG - chr4_3:55581874-55581893 None:intergenic 15.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_3:55581881-55581900 Msa0648970:three_prime_UTR 15.0%
!! TAAAAAATAACACAAACTTA+GGG - chr4_3:55581873-55581892 None:intergenic 15.0%
!! ATAAAAAATAACACAAACTT+AGG - chr4_3:55581874-55581893 None:intergenic 15.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_3:55581881-55581900 Msa0648970:three_prime_UTR 15.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_3:55580725-55580744 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_3:55580726-55580745 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_3:55580942-55580961 Msa0648970:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_3:55581049-55581068 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_3:55581441-55581460 Msa0648970:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_3:55581442-55581461 Msa0648970:intron 20.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_3:55580725-55580744 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_3:55580726-55580745 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_3:55580942-55580961 Msa0648970:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_3:55581049-55581068 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_3:55581441-55581460 Msa0648970:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_3:55581442-55581461 Msa0648970:intron 20.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_3:55580314-55580333 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_3:55580343-55580362 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_3:55580344-55580363 None:intergenic 25.0%
! AACATAGATGTCATACTAAA+GGG - chr4_3:55580573-55580592 None:intergenic 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_3:55580734-55580753 Msa0648970:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_3:55580945-55580964 Msa0648970:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_3:55580997-55581016 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_3:55581374-55581393 Msa0648970:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_3:55581498-55581517 Msa0648970:CDS 25.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_3:55580314-55580333 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_3:55580343-55580362 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_3:55580344-55580363 None:intergenic 25.0%
! AACATAGATGTCATACTAAA+GGG - chr4_3:55580573-55580592 None:intergenic 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_3:55580734-55580753 Msa0648970:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_3:55580945-55580964 Msa0648970:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_3:55580997-55581016 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_3:55581374-55581393 Msa0648970:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_3:55581498-55581517 Msa0648970:CDS 25.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_3:55580301-55580320 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_3:55580302-55580321 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_3:55580404-55580423 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_3:55580405-55580424 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_3:55580542-55580561 Msa0648970:CDS 30.0%
CAACATAGATGTCATACTAA+AGG - chr4_3:55580574-55580593 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_3:55580682-55580701 Msa0648970:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_3:55580683-55580702 Msa0648970:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_3:55580719-55580738 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_3:55580887-55580906 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_3:55580888-55580907 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_3:55580993-55581012 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_3:55580992-55581011 Msa0648970:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_3:55580998-55581017 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_3:55581151-55581170 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_3:55581152-55581171 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_3:55581195-55581214 Msa0648970:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_3:55581509-55581528 Msa0648970:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_3:55581600-55581619 Msa0648970:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_3:55581647-55581666 Msa0648970:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_3:55581697-55581716 Msa0648970:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_3:55581754-55581773 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_3:55581842-55581861 None:intergenic 30.0%
! AAACTTAGGGAGTACAAAAA+GGG - chr4_3:55581860-55581879 None:intergenic 30.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_3:55580301-55580320 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_3:55580302-55580321 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_3:55580404-55580423 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_3:55580405-55580424 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_3:55580542-55580561 Msa0648970:CDS 30.0%
CAACATAGATGTCATACTAA+AGG - chr4_3:55580574-55580593 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_3:55580682-55580701 Msa0648970:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_3:55580683-55580702 Msa0648970:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_3:55580719-55580738 None:intergenic 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_3:55580887-55580906 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_3:55580888-55580907 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_3:55580993-55581012 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_3:55580992-55581011 Msa0648970:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_3:55580998-55581017 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_3:55581151-55581170 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_3:55581152-55581171 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_3:55581195-55581214 Msa0648970:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_3:55581509-55581528 Msa0648970:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_3:55581600-55581619 Msa0648970:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_3:55581647-55581666 Msa0648970:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_3:55581697-55581716 Msa0648970:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_3:55581754-55581773 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_3:55581842-55581861 None:intergenic 30.0%
! AAACTTAGGGAGTACAAAAA+GGG - chr4_3:55581860-55581879 None:intergenic 30.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_3:55580211-55580230 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_3:55580215-55580234 Msa0648970:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_3:55580230-55580249 Msa0648970:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_3:55580231-55580250 Msa0648970:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_3:55580259-55580278 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_3:55580260-55580279 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_3:55580372-55580391 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_3:55580369-55580388 Msa0648970:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_3:55580440-55580459 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_3:55580441-55580460 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_3:55580468-55580487 Msa0648970:CDS 35.0%
TAGATGTCATACTAAAGGGA+TGG - chr4_3:55580569-55580588 None:intergenic 35.0%
TCTATGTTGCATGTCATACT+TGG + chr4_3:55580585-55580604 Msa0648970:CDS 35.0%
CAATTAGAAAGTTGACACCA+TGG - chr4_3:55580627-55580646 None:intergenic 35.0%
! CATGGTGTCAACTTTCTAAT+TGG + chr4_3:55580625-55580644 Msa0648970:CDS 35.0%
! CCTTTTCACACGGAAAATAA+CGG + chr4_3:55580669-55580688 Msa0648970:CDS 35.0%
! TATGGCTTGTGAAACAAGAT+TGG + chr4_3:55580752-55580771 Msa0648970:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_3:55580784-55580803 Msa0648970:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_3:55580809-55580828 Msa0648970:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_3:55580819-55580838 Msa0648970:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_3:55580990-55581009 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_3:55581547-55581566 Msa0648970:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_3:55581609-55581628 Msa0648970:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_3:55581703-55581722 Msa0648970:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_3:55581723-55581742 Msa0648970:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_3:55581755-55581774 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_3:55581762-55581781 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_3:55581772-55581791 Msa0648970:three_prime_UTR 35.0%
! CAAACTTAGGGAGTACAAAA+AGG - chr4_3:55581861-55581880 None:intergenic 35.0%
!! TATCGTCTCTATTTGTTGTG+AGG - chr4_3:55580211-55580230 None:intergenic 35.0%
ACAAATAGAGACGATAGTTG+AGG + chr4_3:55580215-55580234 Msa0648970:five_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_3:55580230-55580249 Msa0648970:exon 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_3:55580231-55580250 Msa0648970:exon 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_3:55580259-55580278 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_3:55580260-55580279 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_3:55580372-55580391 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_3:55580369-55580388 Msa0648970:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_3:55580440-55580459 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_3:55580441-55580460 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_3:55580468-55580487 Msa0648970:CDS 35.0%
TAGATGTCATACTAAAGGGA+TGG - chr4_3:55580569-55580588 None:intergenic 35.0%
TCTATGTTGCATGTCATACT+TGG + chr4_3:55580585-55580604 Msa0648970:CDS 35.0%
CAATTAGAAAGTTGACACCA+TGG - chr4_3:55580627-55580646 None:intergenic 35.0%
! CATGGTGTCAACTTTCTAAT+TGG + chr4_3:55580625-55580644 Msa0648970:CDS 35.0%
! CCTTTTCACACGGAAAATAA+CGG + chr4_3:55580669-55580688 Msa0648970:CDS 35.0%
! TATGGCTTGTGAAACAAGAT+TGG + chr4_3:55580752-55580771 Msa0648970:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_3:55580784-55580803 Msa0648970:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_3:55580809-55580828 Msa0648970:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_3:55580819-55580838 Msa0648970:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_3:55580990-55581009 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_3:55581547-55581566 Msa0648970:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_3:55581609-55581628 Msa0648970:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_3:55581703-55581722 Msa0648970:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_3:55581723-55581742 Msa0648970:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_3:55581755-55581774 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_3:55581762-55581781 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_3:55581772-55581791 Msa0648970:three_prime_UTR 35.0%
! CAAACTTAGGGAGTACAAAA+AGG - chr4_3:55581861-55581880 None:intergenic 35.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_3:55580399-55580418 None:intergenic 40.0%
CATCAAGCGATATATGTCAC+CGG - chr4_3:55580451-55580470 None:intergenic 40.0%
TTTCCGTGTGAAAAGGTGAA+GGG - chr4_3:55580665-55580684 None:intergenic 40.0%
! TTTTCCGTGTGAAAAGGTGA+AGG - chr4_3:55580666-55580685 None:intergenic 40.0%
!! CCGTTATTTTCCGTGTGAAA+AGG - chr4_3:55580672-55580691 None:intergenic 40.0%
!!! GTTGCATTTTGGGATTATGC+TGG + chr4_3:55580693-55580712 Msa0648970:CDS 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_3:55580770-55580789 Msa0648970:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_3:55580771-55580790 Msa0648970:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_3:55580783-55580802 Msa0648970:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_3:55580785-55580804 Msa0648970:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_3:55580795-55580814 Msa0648970:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_3:55580800-55580819 Msa0648970:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_3:55580822-55580841 Msa0648970:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_3:55580845-55580864 Msa0648970:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_3:55580909-55580928 Msa0648970:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_3:55580918-55580937 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_3:55580918-55580937 Msa0648970:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_3:55581458-55581477 Msa0648970:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_3:55581468-55581487 Msa0648970:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_3:55581517-55581536 Msa0648970:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_3:55581518-55581537 Msa0648970:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_3:55581546-55581565 Msa0648970:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_3:55581548-55581567 Msa0648970:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_3:55581615-55581634 Msa0648970:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_3:55581670-55581689 Msa0648970:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_3:55581674-55581693 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_3:55581799-55581818 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_3:55581796-55581815 Msa0648970:three_prime_UTR 40.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_3:55580399-55580418 None:intergenic 40.0%
CATCAAGCGATATATGTCAC+CGG - chr4_3:55580451-55580470 None:intergenic 40.0%
TTTCCGTGTGAAAAGGTGAA+GGG - chr4_3:55580665-55580684 None:intergenic 40.0%
! TTTTCCGTGTGAAAAGGTGA+AGG - chr4_3:55580666-55580685 None:intergenic 40.0%
!! CCGTTATTTTCCGTGTGAAA+AGG - chr4_3:55580672-55580691 None:intergenic 40.0%
!!! GTTGCATTTTGGGATTATGC+TGG + chr4_3:55580693-55580712 Msa0648970:CDS 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_3:55580770-55580789 Msa0648970:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_3:55580771-55580790 Msa0648970:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_3:55580783-55580802 Msa0648970:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_3:55580785-55580804 Msa0648970:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_3:55580795-55580814 Msa0648970:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_3:55580800-55580819 Msa0648970:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_3:55580822-55580841 Msa0648970:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_3:55580845-55580864 Msa0648970:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_3:55580909-55580928 Msa0648970:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_3:55580918-55580937 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_3:55580918-55580937 Msa0648970:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_3:55581458-55581477 Msa0648970:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_3:55581468-55581487 Msa0648970:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_3:55581517-55581536 Msa0648970:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_3:55581518-55581537 Msa0648970:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_3:55581546-55581565 Msa0648970:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_3:55581548-55581567 Msa0648970:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_3:55581615-55581634 Msa0648970:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_3:55581670-55581689 Msa0648970:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_3:55581674-55581693 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_3:55581799-55581818 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_3:55581796-55581815 Msa0648970:three_prime_UTR 40.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_3:55580249-55580268 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_3:55580395-55580414 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_3:55580429-55580448 Msa0648970:CDS 45.0%
!! GTCCAGTTCTGAGTAAACCA+TGG + chr4_3:55580607-55580626 Msa0648970:CDS 45.0%
CACCATGGTTTACTCAGAAC+TGG - chr4_3:55580612-55580631 None:intergenic 45.0%
! TGACCCTTCACCTTTTCACA+CGG + chr4_3:55580659-55580678 Msa0648970:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_3:55580825-55580844 Msa0648970:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_3:55580832-55580851 Msa0648970:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_3:55581622-55581641 Msa0648970:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_3:55581979-55581998 None:intergenic 45.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_3:55580249-55580268 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_3:55580395-55580414 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_3:55580429-55580448 Msa0648970:CDS 45.0%
!! GTCCAGTTCTGAGTAAACCA+TGG + chr4_3:55580607-55580626 Msa0648970:CDS 45.0%
CACCATGGTTTACTCAGAAC+TGG - chr4_3:55580612-55580631 None:intergenic 45.0%
! TGACCCTTCACCTTTTCACA+CGG + chr4_3:55580659-55580678 Msa0648970:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_3:55580825-55580844 Msa0648970:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_3:55580832-55580851 Msa0648970:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_3:55581622-55581641 Msa0648970:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_3:55581979-55581998 None:intergenic 45.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_3:55580432-55580451 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_3:55580437-55580456 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_3:55580831-55580850 Msa0648970:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_3:55581971-55581990 Msa0648970:three_prime_UTR 50.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_3:55580432-55580451 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_3:55580437-55580456 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_3:55580831-55580850 Msa0648970:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_3:55581971-55581990 Msa0648970:three_prime_UTR 50.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_3:55581558-55581577 Msa0648970:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_3:55581958-55581977 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_3:55581957-55581976 Msa0648970:three_prime_UTR 55.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_3:55581558-55581577 Msa0648970:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_3:55581958-55581977 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_3:55581957-55581976 Msa0648970:three_prime_UTR 55.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_3:55581943-55581962 Msa0648970:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_3:55581944-55581963 Msa0648970:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_3:55581953-55581972 None:intergenic 60.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_3:55581943-55581962 Msa0648970:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_3:55581944-55581963 Msa0648970:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_3:55581953-55581972 None:intergenic 60.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_3:55581952-55581971 None:intergenic 65.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_3:55581952-55581971 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55580208 55582015 55580208 ID=Msa0648970;Name=Msa0648970
chr4_3 mRNA 55580208 55582015 55580208 ID=Msa0648970-mRNA-1;Parent=Msa0648970;Name=Msa0648970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=41|1|1|1|1|1|2|259|352
chr4_3 exon 55580208 55581013 55580208 ID=Msa0648970-mRNA-1:exon:14283;Parent=Msa0648970-mRNA-1
chr4_3 exon 55581463 55582015 55581463 ID=Msa0648970-mRNA-1:exon:14284;Parent=Msa0648970-mRNA-1
chr4_3 five_prime_UTR 55580208 55580248 55580208 ID=Msa0648970-mRNA-1:five_prime_utr;Parent=Msa0648970-mRNA-1
chr4_3 CDS 55580249 55581013 55580249 ID=Msa0648970-mRNA-1:cds;Parent=Msa0648970-mRNA-1
chr4_3 CDS 55581463 55581756 55581463 ID=Msa0648970-mRNA-1:cds;Parent=Msa0648970-mRNA-1
chr4_3 three_prime_UTR 55581757 55582015 55581757 ID=Msa0648970-mRNA-1:three_prime_utr;Parent=Msa0648970-mRNA-1
Gene Sequence

>Msa0648970

ATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCCAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGCTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATCTAGAAGTGATGTATGAGCTTAATGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGTATGACATCTATGTTGCATGTCATACTTGGTCCAGTTCTGAGTAAACCATGGTGTCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACGGAAAATAACGGTGTTGCATTTTGGGATTATGCTGGCCATGACCCTAATCACAATAATTTGTTCAATGAAGCTATGGCTTGTGAAACAAGATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTTATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAAGCAATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG
Protein sequence

>Msa0648970

MGSQSEDHVAKLLQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDLEVMYELNDASRLLLKDHPFSMTSMLHVILGPVLSKPWCQLSNWYKNDDPSPFHTENNGVAFWDYAGHDPNHNNLFNEAMACETRLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*