AlfalfaGEDB | Msa0648970

M. sativa cultivar zhongmu-4 / Msa0648970

KEGG: K13262|K16040
GO: GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009812 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030761 GO:0032259 GO:0044237 GO:0044249 GO:0071704
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648970	RHN61806.1	96.338	355	10	1	1	352	15	369	0.0	703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648970	sp\|B0ZB57\|OMT3_HUMLU	57.778	360	139	4	5	352	19	377	1.83e-147	424

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044160	Msa0648970	0.821187	4.613552e-53	-8.615850e-47
Msa0127770	Msa0648970	0.801059	1.076313e-48	-8.615850e-47
Msa0139500	Msa0648970	0.811756	5.970044e-51	-8.615850e-47
Msa0183710	Msa0648970	0.833493	5.167399e-56	-8.615850e-47
Msa0437520	Msa0648970	0.810916	9.084877e-51	-8.615850e-47
Msa0554880	Msa0648970	0.903779	2.436235e-79	-8.615850e-47
Msa0608460	Msa0648970	0.850529	1.600728e-60	-8.615850e-47
Msa0648970	Msa0691490	0.891350	4.303253e-74	-8.615850e-47
Msa0648970	Msa0702790	0.801200	1.007411e-48	-8.615850e-47
Msa0648970	Msa1031170	0.810073	1.381639e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648970	MtrunA17_Chr4g0040621	96.338	355	10	1	1	352	15	369	0.0	703
Msa0648970	MtrunA17_Chr5g0432241	62.327	361	126	5	1	352	1	360	5.70e-162	457
Msa0648970	MtrunA17_Chr5g0432251	61.389	360	130	5	1	352	1	359	5.83e-159	449
Msa0648970	MtrunA17_Chr5g0432301	60.556	360	132	6	1	351	1	359	6.14e-154	437
Msa0648970	MtrunA17_Chr5g0432211	57.500	360	130	6	1	352	1	345	6.73e-141	403
Msa0648970	MtrunA17_Chr5g0432261	57.020	349	116	3	10	352	7	327	1.04e-138	397
Msa0648970	MtrunA17_Chr7g0219141	44.857	350	183	5	10	352	11	357	2.14e-107	318
Msa0648970	MtrunA17_Chr7g0223241	44.350	354	187	4	1	350	1	348	1.75e-106	316
Msa0648970	MtrunA17_Chr4g0046361	45.170	352	183	4	10	352	11	361	6.34e-103	307
Msa0648970	MtrunA17_Chr7g0223231	43.220	354	191	4	1	350	1	348	1.06e-101	303

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648970	AT4G35150.1	35.345	348	171	9	14	348	14	320	1.17e-61	200
Msa0648970	AT4G35160.1	35.519	366	209	11	6	348	16	377	5.26e-60	198
Msa0648970	AT5G54160.1	33.233	331	208	8	30	351	34	360	1.55e-48	167
Msa0648970	AT1G51990.1	32.492	317	198	9	46	352	52	362	4.05e-42	150
Msa0648970	AT1G51990.2	32.177	317	199	9	46	352	52	362	2.02e-41	149
Msa0648970	AT3G53140.1	31.627	332	213	8	30	349	27	356	9.61e-40	144
Msa0648970	AT1G77520.1	27.171	357	227	9	4	338	22	367	1.88e-34	130
Msa0648970	AT1G21130.1	28.746	327	206	9	30	337	40	358	1.03e-32	125
Msa0648970	AT1G33030.1	30.000	320	209	9	30	338	21	336	1.36e-32	125
Msa0648970	AT1G63140.2	31.844	358	211	13	16	350	32	379	1.47e-32	125

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Find 89 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACGGTGTTGCATTT+TGG	0.128208	4_3:+55580682	Msa0648970:CDS
AACATAGATGTCATACTAAA+GGG	0.460641	4_3:-55580570	None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG	0.475412	4_3:+55581647	Msa0648970:CDS
AAGGAAGCAATAAGGAGCAA+AGG	0.587760	4_3:+55581517	Msa0648970:CDS
AAGGGAATAAAACACACAAT+CGG	0.535218	4_3:-55581839	None:intergenic
AAGTGTAAAGGGGTGTTTGA+AGG	0.495522	4_3:+55580795	Msa0648970:CDS
AATACAATGCACTCAATGTT+TGG	0.294021	4_3:-55580885	None:intergenic
AATTACTAGTACTGGTACTA+GGG	0.499071	4_3:-55581751	None:intergenic
AATTATTGTGATTAGGGTCA+TGG	0.475174	4_3:-55580716	None:intergenic
ACAAATAGAGACGATAGTTG+AGG	0.654503	4_3:+55580215	Msa0648970:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATGTGGTTGAATACTT+GGG	-	chr4_3:55580301-55580320	None:intergenic	30.0%
TGAAAATGTGGTTGAATACT+TGG	-	chr4_3:55580302-55580321	None:intergenic	30.0%
TGCATCTAGATTATTGCTTA+AGG	+	chr4_3:55580542-55580561	Msa0648970:CDS	30.0%
CAACATAGATGTCATACTAA+AGG	-	chr4_3:55580574-55580593	None:intergenic	30.0%
AATTATTGTGATTAGGGTCA+TGG	-	chr4_3:55580719-55580738	None:intergenic	30.0%
ATACAATGCACTCAATGTTT+GGG	-	chr4_3:55580887-55580906	None:intergenic	30.0%
AATACAATGCACTCAATGTT+TGG	-	chr4_3:55580888-55580907	None:intergenic	30.0%
TTGAGTAAAATTGAATGGGT+AGG	-	chr4_3:55580993-55581012	None:intergenic	30.0%
CTACCTTGAGTAAAATTGAA+TGG	-	chr4_3:55580998-55581017	None:intergenic	30.0%
AAAAATGCAAGGAAGCAATA+AGG	+	chr4_3:55581509-55581528	Msa0648970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	55580208	55582015	55580208	ID=Msa0648970;Name=Msa0648970
chr4_3	mRNA	55580208	55582015	55580208	ID=Msa0648970-mRNA-1;Parent=Msa0648970;Name=Msa0648970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=41\|1\|1\|1\|1\|1\|2\|259\|352
chr4_3	exon	55580208	55581013	55580208	ID=Msa0648970-mRNA-1:exon:14283;Parent=Msa0648970-mRNA-1
chr4_3	exon	55581463	55582015	55581463	ID=Msa0648970-mRNA-1:exon:14284;Parent=Msa0648970-mRNA-1
chr4_3	five_prime_UTR	55580208	55580248	55580208	ID=Msa0648970-mRNA-1:five_prime_utr;Parent=Msa0648970-mRNA-1
chr4_3	CDS	55580249	55581013	55580249	ID=Msa0648970-mRNA-1:cds;Parent=Msa0648970-mRNA-1
chr4_3	CDS	55581463	55581756	55581463	ID=Msa0648970-mRNA-1:cds;Parent=Msa0648970-mRNA-1
chr4_3	three_prime_UTR	55581757	55582015	55581757	ID=Msa0648970-mRNA-1:three_prime_utr;Parent=Msa0648970-mRNA-1

Gene Sequence

>Msa0648970

ATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCCAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGCTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATCTAGAAGTGATGTATGAGCTTAATGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGTATGACATCTATGTTGCATGTCATACTTGGTCCAGTTCTGAGTAAACCATGGTGTCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACGGAAAATAACGGTGTTGCATTTTGGGATTATGCTGGCCATGACCCTAATCACAATAATTTGTTCAATGAAGCTATGGCTTGTGAAACAAGATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTTATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAAGCAATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG

Protein sequence

>Msa0648970

MGSQSEDHVAKLLQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDLEVMYELNDASRLLLKDHPFSMTSMLHVILGPVLSKPWCQLSNWYKNDDPSPFHTENNGVAFWDYAGHDPNHNNLFNEAMACETRLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*