AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691490 MtrunA17_Chr4g0040621 95.122 369 15 1 1 366 1 369 0.0 721
Msa0691490 MtrunA17_Chr5g0432241 61.864 354 127 4 20 366 8 360 7.03e-161 455
Msa0691490 MtrunA17_Chr5g0432251 61.111 360 131 5 15 366 1 359 9.71e-159 449
Msa0691490 MtrunA17_Chr5g0432301 60.278 360 133 6 15 365 1 359 6.10e-154 437
Msa0691490 MtrunA17_Chr5g0432211 56.667 360 133 6 15 366 1 345 2.55e-139 399
Msa0691490 MtrunA17_Chr5g0432261 56.447 349 118 3 24 366 7 327 5.65e-138 395
Msa0691490 MtrunA17_Chr7g0223241 44.350 354 187 4 15 364 1 348 3.15e-107 318
Msa0691490 MtrunA17_Chr7g0219141 44.571 350 184 5 24 366 11 357 7.34e-107 317
Msa0691490 MtrunA17_Chr7g0223231 43.220 354 191 4 15 364 1 348 2.10e-102 306
Msa0691490 MtrunA17_Chr4g0046361 44.759 353 183 6 24 366 11 361 1.34e-101 304
Msa0691490 MtrunA17_Chr4g0014681 46.610 354 177 4 24 366 11 363 8.74e-100 300
Msa0691490 MtrunA17_Chr4g0014561 46.610 354 177 4 24 366 11 363 2.48e-99 298
Msa0691490 MtrunA17_Chr7g0219161 42.029 345 190 5 16 353 3 344 1.71e-98 296
Msa0691490 MtrunA17_Chr4g0014641 46.176 353 178 4 25 366 12 363 3.31e-97 293
Msa0691490 MtrunA17_Chr1g0188391 42.737 358 187 8 22 366 9 361 1.05e-96 291
Msa0691490 MtrunA17_Chr4g0046341 45.634 355 180 4 24 366 11 364 9.53e-96 289
Msa0691490 MtrunA17_Chr4g0046531 42.651 347 194 3 24 366 373 718 7.78e-93 292
Msa0691490 MtrunA17_Chr4g0046531 41.908 346 196 3 24 365 11 355 1.51e-89 284
Msa0691490 MtrunA17_Chr4g0014661 44.253 348 188 3 24 366 11 357 6.87e-88 269
Msa0691490 MtrunA17_Chr1g0188371 41.141 333 181 7 25 346 12 340 6.79e-87 267
Msa0691490 MtrunA17_Chr4g0014591 43.966 348 189 3 24 366 11 357 3.10e-84 259
Msa0691490 MtrunA17_Chr3g0121301 39.875 321 182 7 33 347 27 342 4.44e-69 221
Msa0691490 MtrunA17_Chr4g0021981 35.311 354 205 7 27 366 25 368 7.17e-66 213
Msa0691490 MtrunA17_Chr4g0022021 34.943 352 209 7 27 366 25 368 1.34e-62 204
Msa0691490 MtrunA17_Chr4g0014601 38.800 250 150 2 25 272 12 260 2.12e-59 192
Msa0691490 MtrunA17_Chr5g0448091 33.437 323 197 9 44 353 33 350 2.64e-49 169
Msa0691490 MtrunA17_Chr7g0276411 32.923 325 203 8 39 351 26 347 1.80e-45 159
Msa0691490 MtrunA17_Chr3g0128011 31.928 332 212 9 44 365 88 415 3.43e-45 160
Msa0691490 MtrunA17_Chr7g0219171 54.887 133 56 2 237 366 117 248 8.00e-44 152
Msa0691490 MtrunA17_Chr7g0219171 47.917 96 49 1 24 119 11 105 2.55e-23 97.4
Msa0691490 MtrunA17_Chr7g0276401 30.081 369 218 9 9 351 6 360 1.16e-43 155
Msa0691490 MtrunA17_Chr7g0218131 30.685 365 226 11 2 353 6 356 6.85e-42 150
Msa0691490 MtrunA17_Chr8g0367441 33.448 290 178 7 60 347 82 358 7.61e-42 150
Msa0691490 MtrunA17_Chr3g0085211 32.110 327 205 9 46 361 43 363 1.59e-41 149
Msa0691490 MtrunA17_Chr8g0345851 40.191 209 115 4 162 365 86 289 3.98e-41 146
Msa0691490 MtrunA17_Chr7g0218301 30.110 362 227 9 15 352 1 360 7.13e-41 147
Msa0691490 MtrunA17_Chr1g0163611 30.473 338 219 5 27 353 23 355 2.94e-40 145
Msa0691490 MtrunA17_Chr7g0218271 29.201 363 231 9 15 353 1 361 4.35e-40 145
Msa0691490 MtrunA17_Chr1g0163601 29.882 338 221 5 27 353 23 355 4.49e-40 145
Msa0691490 MtrunA17_Chr8g0367501 31.579 342 211 7 37 366 25 355 6.49e-40 146
Msa0691490 MtrunA17_Chr8g0367451 32.416 327 204 7 39 351 40 363 1.31e-39 144
Msa0691490 MtrunA17_Chr1g0200491 29.261 352 221 11 18 353 19 358 1.77e-39 144
Msa0691490 MtrunA17_Chr7g0218211 29.201 363 232 11 2 352 5 354 9.02e-39 142
Msa0691490 MtrunA17_Chr2g0314271 31.065 338 220 7 28 354 7 342 1.07e-38 141
Msa0691490 MtrunA17_Chr3g0085201 30.682 352 225 11 20 361 8 350 4.47e-38 139
Msa0691490 MtrunA17_Chr8g0367491 33.198 247 160 5 107 351 118 361 8.81e-38 139
Msa0691490 MtrunA17_Chr7g0218181 28.529 333 214 8 26 353 40 353 2.98e-37 137
Msa0691490 MtrunA17_Chr7g0218261 29.477 363 230 11 2 352 5 353 8.89e-37 136
Msa0691490 MtrunA17_Chr3g0130011 29.191 346 225 10 18 354 12 346 7.93e-36 134
Msa0691490 MtrunA17_Chr2g0307521 35.751 193 119 3 161 351 158 347 1.08e-35 133
Msa0691490 MtrunA17_Chr1g0163621 29.882 338 221 5 27 353 37 369 1.49e-35 133
Msa0691490 MtrunA17_Chr8g0367381 40.462 173 101 2 162 333 154 325 3.38e-35 131
Msa0691490 MtrunA17_Chr3g0130061 29.107 347 226 10 17 354 11 346 1.16e-33 128
Msa0691490 MtrunA17_Chr6g0482291 33.939 165 97 3 191 351 5 161 3.61e-24 97.8
Msa0691490 MtrunA17_Chr8g0367401 42.202 109 62 1 161 269 3 110 5.09e-21 88.2
Msa0691490 MtrunA17_Chr4g0014611 56.566 99 40 1 271 366 9 107 1.08e-18 80.9
Msa0691490 MtrunA17_Chr4g0014671 55.238 105 44 1 265 366 30 134 4.44e-16 74.3
Msa0691490 MtrunA17_Chr8g0367461 37.113 97 60 1 256 351 1 97 3.58e-15 71.2
Msa0691490 MtrunA17_Chr8g0367421 35.780 109 52 2 161 269 3 93 2.97e-14 68.9
Msa0691490 MtrunA17_Chr4g0011691 49.367 79 37 3 271 347 140 217 3.64e-13 68.6
Msa0691490 MtrunA17_Chr1g0170941 45.455 66 36 0 202 267 11 76 8.80e-12 60.5
Msa0691490 MtrunA17_Chr8g0367391 40.476 84 49 1 269 351 36 119 8.79e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691490 AT4G35150.1 34.483 348 174 9 28 362 14 320 3.49e-61 199
Msa0691490 AT4G35160.1 34.973 366 211 11 20 362 16 377 3.07e-59 196
Msa0691490 AT5G54160.1 32.931 331 209 8 44 365 34 360 2.58e-49 170
Msa0691490 AT1G51990.2 32.288 319 200 9 58 366 50 362 1.19e-42 152
Msa0691490 AT1G51990.1 32.288 319 200 9 58 366 50 362 6.20e-42 150
Msa0691490 AT3G53140.1 32.500 320 202 8 44 351 27 344 4.54e-41 148
Msa0691490 AT1G77520.1 26.738 374 242 10 2 352 3 367 8.24e-38 140
Msa0691490 AT1G33030.1 29.688 320 210 9 44 352 21 336 1.01e-32 125
Msa0691490 AT1G63140.2 31.564 358 212 13 30 364 32 379 3.68e-32 124
Msa0691490 AT1G63140.4 31.564 358 212 13 30 364 52 399 4.48e-32 125
Msa0691490 AT1G21130.1 28.440 327 207 9 44 351 40 358 3.91e-31 121
Msa0691490 AT1G76790.1 28.000 325 205 7 44 347 30 346 1.57e-30 120
Msa0691490 AT1G21100.1 28.135 327 208 9 44 351 40 358 1.82e-30 120
Msa0691490 AT1G21110.1 28.086 324 206 10 44 348 40 355 2.34e-29 117
Msa0691490 AT5G53810.1 27.485 342 224 7 44 365 40 377 3.94e-29 116
Msa0691490 AT5G37170.2 35.000 200 116 7 172 363 38 231 9.20e-29 112
Msa0691490 AT5G37170.1 35.000 200 116 7 172 363 138 331 1.51e-28 114
Msa0691490 AT1G21120.1 27.829 327 209 10 44 351 40 358 1.65e-28 114
Msa0691490 AT1G77530.1 28.493 365 237 9 2 347 3 362 2.18e-28 114
Msa0691490 AT1G21120.2 27.744 328 210 10 44 352 88 407 3.30e-28 114
Msa0691490 AT5G37170.3 35.714 182 107 6 190 363 4 183 9.65e-28 108
Msa0691490 AT1G62900.1 37.629 194 108 6 178 364 16 203 3.21e-25 101
Msa0691490 AT1G33030.2 26.695 236 159 8 44 269 21 252 2.76e-13 69.7
Msa0691490 AT1G63140.1 30.483 269 156 11 20 269 46 302 4.95e-13 69.3
Msa0691490 AT1G33030.3 26.695 236 159 8 44 269 21 252 5.23e-13 68.9

Find 88 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTCAATTGCACATTTA+AGG 0.108406 4_4:-59642537 None:intergenic
AAAATAACGGTGTTGCATTT+TGG 0.128208 4_4:+59642878 Msa0691490:CDS
GAATTTATGCTTTAAGATTT+TGG 0.158961 4_4:-59644199 None:intergenic
TATGGCTTGTGAAACTAAAT+TGG 0.213922 4_4:+59642948 Msa0691490:CDS
CATGGTATCAACTTTCTAAT+TGG 0.214803 4_4:+59642821 Msa0691490:CDS
AGCACAATTGTTCTATGATT+TGG 0.221525 4_4:+59643796 Msa0691490:CDS
TGAACAAATTATTGTGATTA+GGG 0.236770 4_4:-59642918 None:intergenic
CAATTCAATTGCACATTTAA+GGG 0.288826 4_4:-59642536 None:intergenic
AATACAATGCACTCAATGTT+TGG 0.294021 4_4:-59643081 None:intergenic
TTGAACAAATTATTGTGATT+AGG 0.297769 4_4:-59642919 None:intergenic
CAAACTTACAGAGTACAAAA+AGG 0.311906 4_4:-59644054 None:intergenic
CAATTACTAGTACTGGTACT+AGG 0.343088 4_4:-59643948 None:intergenic
GATCTTCCACATGTTGTTGA+TGG 0.360459 4_4:+59643105 Msa0691490:CDS
TTGAAGTGCTTCACACTATA+AGG 0.361244 4_4:+59643968 Msa0691490:three_prime_UTR
TGCAACATGATCTTCACTTT+GGG 0.361816 4_4:-59642452 None:intergenic
CCAGTGTATTCTCTGATTGT+TGG 0.375578 4_4:+59643992 Msa0691490:three_prime_UTR
CATGTTGTTGATGGCTTACA+AGG 0.376283 4_4:+59643114 Msa0691490:CDS
TGCATCTAGATTATTGCTTA+AGG 0.387456 4_4:+59642738 Msa0691490:CDS
CAACTATCGTCTCTTCTACT+TGG 0.395447 4_4:-59642408 None:intergenic
TAAAGGGGTGTTTGAAGGAT+TGG 0.402290 4_4:+59642996 Msa0691490:CDS
CCAGATGTTATACACAACTA+TGG 0.417598 4_4:+59642565 Msa0691490:CDS
TGAAAATGTGGTTGAATACT+TGG 0.417805 4_4:-59642495 None:intergenic
TTGCAACATGATCTTCACTT+TGG 0.418082 4_4:-59642453 None:intergenic
GTTTGAAGGATTGGAATCAT+TGG 0.419856 4_4:+59643005 Msa0691490:CDS
TACCATGGTTTACTCAAAAC+CGG 0.422617 4_4:-59642805 None:intergenic
ATACAATGCACTCAATGTTT+GGG 0.429620 4_4:-59643080 None:intergenic
TAAAATAGATGTCATGCTAA+AGG 0.436633 4_4:-59642767 None:intergenic
AGTGAAAACTTAAAATATGT+TGG 0.443663 4_4:+59643138 Msa0691490:CDS
GTTCTATGATTTGGAGATGA+TGG 0.453028 4_4:+59643805 Msa0691490:CDS
TTTACATGTCATACATGGTC+CGG 0.454563 4_4:+59642786 Msa0691490:CDS
CTACCTTGAGTAAAATTGAA+TGG 0.457108 4_4:-59643191 None:intergenic
GTGTAACCCGTGCCGATGCA+CGG 0.458308 4_4:+59644139 Msa0691490:three_prime_UTR
CCATAGTTGTGTATAACATC+TGG 0.459982 4_4:-59642565 None:intergenic
GTTGATGTTGGTGGAGGCAT+AGG 0.464053 4_4:+59643027 Msa0691490:CDS
AAAATAGATGTCATGCTAAA+GGG 0.465949 4_4:-59642766 None:intergenic
CCAATCCACCCTTCTAAAAC+CGG 0.467765 4_4:+59642625 Msa0691490:CDS
GAGATGATGGTGTTGGTCAA+TGG 0.468447 4_4:+59643818 Msa0691490:CDS
AATTATTGTGATTAGGGTCA+TGG 0.475174 4_4:-59642912 None:intergenic
AAGAGAGAAATGAGAAAGAA+TGG 0.475412 4_4:+59643843 Msa0691490:CDS
TACCTTGAGTAAAATTGAAT+GGG 0.480602 4_4:-59643190 None:intergenic
TTGTGATGGGAAAGTGTAAA+GGG 0.481829 4_4:+59642980 Msa0691490:CDS
TAATTTGTTCAATGAAGCTA+TGG 0.484158 4_4:+59642930 Msa0691490:CDS
AAGTGTAAAGGGGTGTTTGA+AGG 0.495522 4_4:+59642991 Msa0691490:CDS
AATTACTAGTACTGGTACTA+GGG 0.499071 4_4:-59643947 None:intergenic
AGCACTTCAATTACTAGTAC+TGG 0.500351 4_4:-59643955 None:intergenic
GTCAACCCGTGCATCGGCAC+GGG 0.504902 4_4:-59644145 None:intergenic
TTGGAATCATTGGTTGATGT+TGG 0.505871 4_4:+59643015 Msa0691490:CDS
CTGAACCGGTGTGACAGTTA+CGG 0.509380 4_4:+59644167 Msa0691490:three_prime_UTR
TACAAGATAACTCATGGTCT+TGG 0.510347 4_4:+59643899 Msa0691490:CDS
AGGAAGCAATAAGGAGCAAA+GGG 0.515933 4_4:+59643714 Msa0691490:CDS
TTGATGTTGGTGGAGGCATA+GGG 0.518405 4_4:+59643028 Msa0691490:CDS
TCTTCACTTTGGGATCCCAT+TGG 0.518428 4_4:-59642442 None:intergenic
GAATCATTGGTTGATGTTGG+TGG 0.520300 4_4:+59643018 Msa0691490:CDS
AGGCATAGGGACTATTACTA+AGG 0.522501 4_4:+59643041 Msa0691490:CDS
GATGCACGGGTTGACTGAAC+CGG 0.525870 4_4:+59644153 Msa0691490:three_prime_UTR
AGTCAACCCGTGCATCGGCA+CGG 0.525999 4_4:-59644146 None:intergenic
GTTGAGGAATCAAAACCAAT+GGG 0.529523 4_4:+59642427 Msa0691490:CDS
AAGGGAATAAAACACACAAT+CGG 0.535218 4_4:-59644035 None:intergenic
AGTAAAATTGAATGGGTAGG+AGG 0.536012 4_4:-59643183 None:intergenic
ATTGGCTTCTAGTGTTGTGA+TGG 0.537039 4_4:+59642966 Msa0691490:CDS
TGAAGGGTGTATTACATGAC+TGG 0.541126 4_4:+59643654 Msa0691490:intron
AGTTGAGGAATCAAAACCAA+TGG 0.547437 4_4:+59642426 Msa0691490:CDS
TGTAACCCGTGCCGATGCAC+GGG 0.557705 4_4:+59644140 Msa0691490:three_prime_UTR
GATAATCATAGACGCAGTGA+TGG 0.557902 4_4:+59643742 Msa0691490:CDS
AGTAACTACAAGATAACTCA+TGG 0.563555 4_4:+59643893 Msa0691490:CDS
GAAAACTTAAAATATGTTGG+AGG 0.568473 4_4:+59643141 Msa0691490:CDS
ATAATCATAGACGCAGTGAT+GGG 0.569255 4_4:+59643743 Msa0691490:CDS
AGTTTATGAAACTGAAAATG+TGG 0.571931 4_4:-59642507 None:intergenic
CGCAGTGATGGGGAATGAGA+AGG 0.578489 4_4:+59643754 Msa0691490:CDS
AAGGAAGCAATAAGGAGCAA+AGG 0.587760 4_4:+59643713 Msa0691490:CDS
GGTTCAGTCAACCCGTGCAT+CGG 0.589626 4_4:-59644151 None:intergenic
TCATTGGTTGATGTTGGTGG+AGG 0.592377 4_4:+59643021 Msa0691490:CDS
TTGAGTAAAATTGAATGGGT+AGG 0.594723 4_4:-59643186 None:intergenic
CAATTAGAAAGTTGATACCA+TGG 0.598930 4_4:-59642820 None:intergenic
GAAAATGTGGTTGAATACTT+GGG 0.602349 4_4:-59642494 None:intergenic
GTTGTGATGGGAAAGTGTAA+AGG 0.606315 4_4:+59642979 Msa0691490:CDS
TGATTTGGAGATGATGGTGT+TGG 0.610739 4_4:+59643811 Msa0691490:CDS
TTTCGGTGTGAAAAGGTGAA+GGG 0.612939 4_4:-59642858 None:intergenic
TAGATGTCATGCTAAAGGGA+TGG 0.619328 4_4:-59642762 None:intergenic
AGTAGAAGAGACGATAGTTG+AGG 0.625579 4_4:+59642411 Msa0691490:CDS
TTGGCTTCTAGTGTTGTGAT+GGG 0.629299 4_4:+59642967 Msa0691490:CDS
TGTAAGCCATCAACAACATG+TGG 0.632178 4_4:-59643111 None:intergenic
CATCAAACGATATATGTCAC+CGG 0.644449 4_4:-59642644 None:intergenic
TAATCATAGACGCAGTGATG+GGG 0.654303 4_4:+59643744 Msa0691490:CDS
TGTGATGGGAAAGTGTAAAG+GGG 0.694075 4_4:+59642981 Msa0691490:CDS
ATTACATGACTGGAACGATG+AGG 0.712908 4_4:+59643664 Msa0691490:CDS
CCAACAATCAGAGAATACAC+TGG 0.713575 4_4:-59643992 None:intergenic
TTAGTCCGTAACTGTCACAC+CGG 0.732730 4_4:-59644172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_4:59643264-59643283 Msa0691490:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_4:59643370-59643389 Msa0691490:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_4:59643371-59643390 Msa0691490:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_4:59643481-59643500 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_4:59643557-59643576 Msa0691490:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_4:59643558-59643577 Msa0691490:intron 10.0%
!!! TAATTTATTTTTTTAGTCTT+TGG + chr4_4:59643264-59643283 Msa0691490:intron 10.0%
!!! TTTTTCTTTCTTTATTTTTA+TGG + chr4_4:59643370-59643389 Msa0691490:intron 10.0%
!!! TTTTCTTTCTTTATTTTTAT+GGG + chr4_4:59643371-59643390 Msa0691490:intron 10.0%
!!! TTATTAAATTTGTTGAAAAT+TGG - chr4_4:59643481-59643500 None:intergenic 10.0%
!! TATAACTTAATCTTATATTT+AGG + chr4_4:59643557-59643576 Msa0691490:intron 10.0%
!! ATAACTTAATCTTATATTTA+GGG + chr4_4:59643558-59643577 Msa0691490:intron 10.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_4:59644077-59644096 Msa0691490:three_prime_UTR 15.0%
!!! TGTTATTTTTTATTTTTGAG+AGG + chr4_4:59644077-59644096 Msa0691490:three_prime_UTR 15.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_4:59642921-59642940 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_4:59642922-59642941 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_4:59643138-59643157 Msa0691490:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_4:59643245-59643264 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_4:59643637-59643656 Msa0691490:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_4:59643638-59643657 Msa0691490:intron 20.0%
!! TGAACAAATTATTGTGATTA+GGG - chr4_4:59642921-59642940 None:intergenic 20.0%
!! TTGAACAAATTATTGTGATT+AGG - chr4_4:59642922-59642941 None:intergenic 20.0%
!! AGTGAAAACTTAAAATATGT+TGG + chr4_4:59643138-59643157 Msa0691490:CDS 20.0%
!!! AAATTGTTCTTTTGTTTTTG+TGG - chr4_4:59643245-59643264 None:intergenic 20.0%
!! ATATGATATGATATACATGA+AGG + chr4_4:59643637-59643656 Msa0691490:intron 20.0%
!! TATGATATGATATACATGAA+GGG + chr4_4:59643638-59643657 Msa0691490:intron 20.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_4:59642510-59642529 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_4:59642539-59642558 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_4:59642540-59642559 None:intergenic 25.0%
! AAAATAGATGTCATGCTAAA+GGG - chr4_4:59642769-59642788 None:intergenic 25.0%
! TAAAATAGATGTCATGCTAA+AGG - chr4_4:59642770-59642789 None:intergenic 25.0%
!! TCTATTTTACATGTCATACA+TGG + chr4_4:59642781-59642800 Msa0691490:CDS 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_4:59642930-59642949 Msa0691490:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_4:59643141-59643160 Msa0691490:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_4:59643193-59643212 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_4:59643570-59643589 Msa0691490:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_4:59643694-59643713 Msa0691490:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_4:59644056-59644075 None:intergenic 25.0%
! AGTTTATGAAACTGAAAATG+TGG - chr4_4:59642510-59642529 None:intergenic 25.0%
! CAATTCAATTGCACATTTAA+GGG - chr4_4:59642539-59642558 None:intergenic 25.0%
! ACAATTCAATTGCACATTTA+AGG - chr4_4:59642540-59642559 None:intergenic 25.0%
! AAAATAGATGTCATGCTAAA+GGG - chr4_4:59642769-59642788 None:intergenic 25.0%
! TAAAATAGATGTCATGCTAA+AGG - chr4_4:59642770-59642789 None:intergenic 25.0%
!! TCTATTTTACATGTCATACA+TGG + chr4_4:59642781-59642800 Msa0691490:CDS 25.0%
!!! TAATTTGTTCAATGAAGCTA+TGG + chr4_4:59642930-59642949 Msa0691490:CDS 25.0%
! GAAAACTTAAAATATGTTGG+AGG + chr4_4:59643141-59643160 Msa0691490:CDS 25.0%
! TACCTTGAGTAAAATTGAAT+GGG - chr4_4:59643193-59643212 None:intergenic 25.0%
! TATATTTAGGGACTTCTAAA+TGG + chr4_4:59643570-59643589 Msa0691490:intron 25.0%
! GAAAATACTCAAAAAATGCA+AGG + chr4_4:59643694-59643713 Msa0691490:CDS 25.0%
! AAACTTACAGAGTACAAAAA+GGG - chr4_4:59644056-59644075 None:intergenic 25.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_4:59642497-59642516 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_4:59642498-59642517 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_4:59642600-59642619 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_4:59642601-59642620 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_4:59642738-59642757 Msa0691490:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_4:59642823-59642842 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_4:59642821-59642840 Msa0691490:CDS 30.0%
!! AAATGCAACACCGTTATTTT+CGG - chr4_4:59642878-59642897 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_4:59642878-59642897 Msa0691490:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_4:59642879-59642898 Msa0691490:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_4:59642915-59642934 None:intergenic 30.0%
! TATGGCTTGTGAAACTAAAT+TGG + chr4_4:59642948-59642967 Msa0691490:CDS 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_4:59643083-59643102 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_4:59643084-59643103 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_4:59643189-59643208 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_4:59643188-59643207 Msa0691490:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_4:59643194-59643213 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_4:59643347-59643366 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_4:59643348-59643367 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_4:59643391-59643410 Msa0691490:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_4:59643705-59643724 Msa0691490:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_4:59643796-59643815 Msa0691490:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_4:59643843-59643862 Msa0691490:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_4:59643893-59643912 Msa0691490:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_4:59643950-59643969 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_4:59644038-59644057 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_4:59644057-59644076 None:intergenic 30.0%
GAAAATGTGGTTGAATACTT+GGG - chr4_4:59642497-59642516 None:intergenic 30.0%
TGAAAATGTGGTTGAATACT+TGG - chr4_4:59642498-59642517 None:intergenic 30.0%
!!! AAGAAATGAGTTTTGAGAGT+GGG - chr4_4:59642600-59642619 None:intergenic 30.0%
!!! AAAGAAATGAGTTTTGAGAG+TGG - chr4_4:59642601-59642620 None:intergenic 30.0%
TGCATCTAGATTATTGCTTA+AGG + chr4_4:59642738-59642757 Msa0691490:CDS 30.0%
!! CAATTAGAAAGTTGATACCA+TGG - chr4_4:59642823-59642842 None:intergenic 30.0%
CATGGTATCAACTTTCTAAT+TGG + chr4_4:59642821-59642840 Msa0691490:CDS 30.0%
!! AAATGCAACACCGTTATTTT+CGG - chr4_4:59642878-59642897 None:intergenic 30.0%
!!! AAAATAACGGTGTTGCATTT+TGG + chr4_4:59642878-59642897 Msa0691490:CDS 30.0%
!!! AAATAACGGTGTTGCATTTT+GGG + chr4_4:59642879-59642898 Msa0691490:CDS 30.0%
AATTATTGTGATTAGGGTCA+TGG - chr4_4:59642915-59642934 None:intergenic 30.0%
! TATGGCTTGTGAAACTAAAT+TGG + chr4_4:59642948-59642967 Msa0691490:CDS 30.0%
ATACAATGCACTCAATGTTT+GGG - chr4_4:59643083-59643102 None:intergenic 30.0%
AATACAATGCACTCAATGTT+TGG - chr4_4:59643084-59643103 None:intergenic 30.0%
TTGAGTAAAATTGAATGGGT+AGG - chr4_4:59643189-59643208 None:intergenic 30.0%
! TACCCATTCAATTTTACTCA+AGG + chr4_4:59643188-59643207 Msa0691490:CDS 30.0%
CTACCTTGAGTAAAATTGAA+TGG - chr4_4:59643194-59643213 None:intergenic 30.0%
! CAAAGAGAGTCTTATGTTTA+GGG - chr4_4:59643347-59643366 None:intergenic 30.0%
! TCAAAGAGAGTCTTATGTTT+AGG - chr4_4:59643348-59643367 None:intergenic 30.0%
! GGGACAAACTTTCAAATTTT+TGG + chr4_4:59643391-59643410 Msa0691490:intron 30.0%
AAAAATGCAAGGAAGCAATA+AGG + chr4_4:59643705-59643724 Msa0691490:CDS 30.0%
AGCACAATTGTTCTATGATT+TGG + chr4_4:59643796-59643815 Msa0691490:CDS 30.0%
AAGAGAGAAATGAGAAAGAA+TGG + chr4_4:59643843-59643862 Msa0691490:CDS 30.0%
AGTAACTACAAGATAACTCA+TGG + chr4_4:59643893-59643912 Msa0691490:CDS 30.0%
!! AATTACTAGTACTGGTACTA+GGG - chr4_4:59643950-59643969 None:intergenic 30.0%
AAGGGAATAAAACACACAAT+CGG - chr4_4:59644038-59644057 None:intergenic 30.0%
CAAACTTACAGAGTACAAAA+AGG - chr4_4:59644057-59644076 None:intergenic 30.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_4:59642426-59642445 Msa0691490:CDS 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_4:59642427-59642446 Msa0691490:CDS 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_4:59642455-59642474 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_4:59642456-59642475 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_4:59642568-59642587 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_4:59642565-59642584 Msa0691490:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_4:59642636-59642655 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_4:59642637-59642656 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_4:59642647-59642666 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_4:59642664-59642683 Msa0691490:CDS 35.0%
TTTACATGTCATACATGGTC+CGG + chr4_4:59642786-59642805 Msa0691490:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_4:59642808-59642827 None:intergenic 35.0%
! CCTTTTCACACCGAAAATAA+CGG + chr4_4:59642865-59642884 Msa0691490:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_4:59642980-59642999 Msa0691490:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_4:59643005-59643024 Msa0691490:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_4:59643015-59643034 Msa0691490:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_4:59643186-59643205 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_4:59643743-59643762 Msa0691490:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_4:59643805-59643824 Msa0691490:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_4:59643899-59643918 Msa0691490:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_4:59643919-59643938 Msa0691490:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_4:59643951-59643970 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_4:59643958-59643977 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_4:59643968-59643987 Msa0691490:three_prime_UTR 35.0%
AGTTGAGGAATCAAAACCAA+TGG + chr4_4:59642426-59642445 Msa0691490:CDS 35.0%
GTTGAGGAATCAAAACCAAT+GGG + chr4_4:59642427-59642446 Msa0691490:CDS 35.0%
TGCAACATGATCTTCACTTT+GGG - chr4_4:59642455-59642474 None:intergenic 35.0%
TTGCAACATGATCTTCACTT+TGG - chr4_4:59642456-59642475 None:intergenic 35.0%
CCATAGTTGTGTATAACATC+TGG - chr4_4:59642568-59642587 None:intergenic 35.0%
CCAGATGTTATACACAACTA+TGG + chr4_4:59642565-59642584 Msa0691490:CDS 35.0%
!!! ATATGTCACCGGTTTTAGAA+GGG - chr4_4:59642636-59642655 None:intergenic 35.0%
!!! TATATGTCACCGGTTTTAGA+AGG - chr4_4:59642637-59642656 None:intergenic 35.0%
CATCAAACGATATATGTCAC+CGG - chr4_4:59642647-59642666 None:intergenic 35.0%
!! ATGCGAGTTTTAACACATTC+TGG + chr4_4:59642664-59642683 Msa0691490:CDS 35.0%
TTTACATGTCATACATGGTC+CGG + chr4_4:59642786-59642805 Msa0691490:CDS 35.0%
TACCATGGTTTACTCAAAAC+CGG - chr4_4:59642808-59642827 None:intergenic 35.0%
! CCTTTTCACACCGAAAATAA+CGG + chr4_4:59642865-59642884 Msa0691490:CDS 35.0%
! TTGTGATGGGAAAGTGTAAA+GGG + chr4_4:59642980-59642999 Msa0691490:CDS 35.0%
GTTTGAAGGATTGGAATCAT+TGG + chr4_4:59643005-59643024 Msa0691490:CDS 35.0%
! TTGGAATCATTGGTTGATGT+TGG + chr4_4:59643015-59643034 Msa0691490:CDS 35.0%
AGTAAAATTGAATGGGTAGG+AGG - chr4_4:59643186-59643205 None:intergenic 35.0%
ATAATCATAGACGCAGTGAT+GGG + chr4_4:59643743-59643762 Msa0691490:CDS 35.0%
! GTTCTATGATTTGGAGATGA+TGG + chr4_4:59643805-59643824 Msa0691490:CDS 35.0%
TACAAGATAACTCATGGTCT+TGG + chr4_4:59643899-59643918 Msa0691490:CDS 35.0%
!!! TGGTTTTAAGTCTCTCATTG+AGG + chr4_4:59643919-59643938 Msa0691490:CDS 35.0%
!! CAATTACTAGTACTGGTACT+AGG - chr4_4:59643951-59643970 None:intergenic 35.0%
AGCACTTCAATTACTAGTAC+TGG - chr4_4:59643958-59643977 None:intergenic 35.0%
! TTGAAGTGCTTCACACTATA+AGG + chr4_4:59643968-59643987 Msa0691490:three_prime_UTR 35.0%
CAACTATCGTCTCTTCTACT+TGG - chr4_4:59642411-59642430 None:intergenic 40.0%
AGTAGAAGAGACGATAGTTG+AGG + chr4_4:59642411-59642430 Msa0691490:CDS 40.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_4:59642595-59642614 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_4:59642765-59642784 None:intergenic 40.0%
! TTTCGGTGTGAAAAGGTGAA+GGG - chr4_4:59642861-59642880 None:intergenic 40.0%
!! TTTTCGGTGTGAAAAGGTGA+AGG - chr4_4:59642862-59642881 None:intergenic 40.0%
!! CCGTTATTTTCGGTGTGAAA+AGG - chr4_4:59642868-59642887 None:intergenic 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_4:59642966-59642985 Msa0691490:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_4:59642967-59642986 Msa0691490:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_4:59642979-59642998 Msa0691490:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_4:59642981-59643000 Msa0691490:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_4:59642991-59643010 Msa0691490:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_4:59642996-59643015 Msa0691490:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_4:59643018-59643037 Msa0691490:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_4:59643041-59643060 Msa0691490:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_4:59643105-59643124 Msa0691490:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_4:59643114-59643133 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_4:59643114-59643133 Msa0691490:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_4:59643654-59643673 Msa0691490:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_4:59643664-59643683 Msa0691490:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_4:59643713-59643732 Msa0691490:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_4:59643714-59643733 Msa0691490:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_4:59643742-59643761 Msa0691490:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_4:59643744-59643763 Msa0691490:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_4:59643811-59643830 Msa0691490:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_4:59643866-59643885 Msa0691490:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_4:59643870-59643889 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_4:59643995-59644014 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_4:59643992-59644011 Msa0691490:three_prime_UTR 40.0%
CAACTATCGTCTCTTCTACT+TGG - chr4_4:59642411-59642430 None:intergenic 40.0%
AGTAGAAGAGACGATAGTTG+AGG + chr4_4:59642411-59642430 Msa0691490:CDS 40.0%
!!! ATGAGTTTTGAGAGTGGGAT+TGG - chr4_4:59642595-59642614 None:intergenic 40.0%
TAGATGTCATGCTAAAGGGA+TGG - chr4_4:59642765-59642784 None:intergenic 40.0%
! TTTCGGTGTGAAAAGGTGAA+GGG - chr4_4:59642861-59642880 None:intergenic 40.0%
!! TTTTCGGTGTGAAAAGGTGA+AGG - chr4_4:59642862-59642881 None:intergenic 40.0%
!! CCGTTATTTTCGGTGTGAAA+AGG - chr4_4:59642868-59642887 None:intergenic 40.0%
! ATTGGCTTCTAGTGTTGTGA+TGG + chr4_4:59642966-59642985 Msa0691490:CDS 40.0%
TTGGCTTCTAGTGTTGTGAT+GGG + chr4_4:59642967-59642986 Msa0691490:CDS 40.0%
! GTTGTGATGGGAAAGTGTAA+AGG + chr4_4:59642979-59642998 Msa0691490:CDS 40.0%
! TGTGATGGGAAAGTGTAAAG+GGG + chr4_4:59642981-59643000 Msa0691490:CDS 40.0%
!! AAGTGTAAAGGGGTGTTTGA+AGG + chr4_4:59642991-59643010 Msa0691490:CDS 40.0%
!! TAAAGGGGTGTTTGAAGGAT+TGG + chr4_4:59642996-59643015 Msa0691490:CDS 40.0%
! GAATCATTGGTTGATGTTGG+TGG + chr4_4:59643018-59643037 Msa0691490:CDS 40.0%
AGGCATAGGGACTATTACTA+AGG + chr4_4:59643041-59643060 Msa0691490:CDS 40.0%
GATCTTCCACATGTTGTTGA+TGG + chr4_4:59643105-59643124 Msa0691490:CDS 40.0%
TGTAAGCCATCAACAACATG+TGG - chr4_4:59643114-59643133 None:intergenic 40.0%
!! CATGTTGTTGATGGCTTACA+AGG + chr4_4:59643114-59643133 Msa0691490:CDS 40.0%
! TGAAGGGTGTATTACATGAC+TGG + chr4_4:59643654-59643673 Msa0691490:intron 40.0%
ATTACATGACTGGAACGATG+AGG + chr4_4:59643664-59643683 Msa0691490:CDS 40.0%
AAGGAAGCAATAAGGAGCAA+AGG + chr4_4:59643713-59643732 Msa0691490:CDS 40.0%
AGGAAGCAATAAGGAGCAAA+GGG + chr4_4:59643714-59643733 Msa0691490:CDS 40.0%
GATAATCATAGACGCAGTGA+TGG + chr4_4:59643742-59643761 Msa0691490:CDS 40.0%
TAATCATAGACGCAGTGATG+GGG + chr4_4:59643744-59643763 Msa0691490:CDS 40.0%
! TGATTTGGAGATGATGGTGT+TGG + chr4_4:59643811-59643830 Msa0691490:CDS 40.0%
!!! TCCAAGTTGTTTTTCTCTGC+TGG + chr4_4:59643866-59643885 Msa0691490:CDS 40.0%
ACCAGCAGAGAAAAACAACT+TGG - chr4_4:59643870-59643889 None:intergenic 40.0%
CCAACAATCAGAGAATACAC+TGG - chr4_4:59643995-59644014 None:intergenic 40.0%
CCAGTGTATTCTCTGATTGT+TGG + chr4_4:59643992-59644011 Msa0691490:three_prime_UTR 40.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_4:59642445-59642464 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_4:59642591-59642610 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_4:59642625-59642644 Msa0691490:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_4:59642803-59642822 Msa0691490:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_4:59643021-59643040 Msa0691490:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_4:59643028-59643047 Msa0691490:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_4:59643818-59643837 Msa0691490:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_4:59644175-59644194 None:intergenic 45.0%
!! TCTTCACTTTGGGATCCCAT+TGG - chr4_4:59642445-59642464 None:intergenic 45.0%
!!! GTTTTGAGAGTGGGATTGGT+TGG - chr4_4:59642591-59642610 None:intergenic 45.0%
!! CCAATCCACCCTTCTAAAAC+CGG + chr4_4:59642625-59642644 Msa0691490:CDS 45.0%
!!! GTCCGGTTTTGAGTAAACCA+TGG + chr4_4:59642803-59642822 Msa0691490:CDS 45.0%
! TCATTGGTTGATGTTGGTGG+AGG + chr4_4:59643021-59643040 Msa0691490:CDS 45.0%
! TTGATGTTGGTGGAGGCATA+GGG + chr4_4:59643028-59643047 Msa0691490:CDS 45.0%
!! GAGATGATGGTGTTGGTCAA+TGG + chr4_4:59643818-59643837 Msa0691490:CDS 45.0%
TTAGTCCGTAACTGTCACAC+CGG - chr4_4:59644175-59644194 None:intergenic 45.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_4:59642628-59642647 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_4:59642633-59642652 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_4:59643027-59643046 Msa0691490:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_4:59644167-59644186 Msa0691490:three_prime_UTR 50.0%
!!! CCGGTTTTAGAAGGGTGGAT+TGG - chr4_4:59642628-59642647 None:intergenic 50.0%
!!! TGTCACCGGTTTTAGAAGGG+TGG - chr4_4:59642633-59642652 None:intergenic 50.0%
! GTTGATGTTGGTGGAGGCAT+AGG + chr4_4:59643027-59643046 Msa0691490:CDS 50.0%
CTGAACCGGTGTGACAGTTA+CGG + chr4_4:59644167-59644186 Msa0691490:three_prime_UTR 50.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_4:59643754-59643773 Msa0691490:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_4:59644154-59644173 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_4:59644153-59644172 Msa0691490:three_prime_UTR 55.0%
! CGCAGTGATGGGGAATGAGA+AGG + chr4_4:59643754-59643773 Msa0691490:CDS 55.0%
GGTTCAGTCAACCCGTGCAT+CGG - chr4_4:59644154-59644173 None:intergenic 55.0%
! GATGCACGGGTTGACTGAAC+CGG + chr4_4:59644153-59644172 Msa0691490:three_prime_UTR 55.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_4:59644139-59644158 Msa0691490:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_4:59644140-59644159 Msa0691490:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_4:59644149-59644168 None:intergenic 60.0%
! GTGTAACCCGTGCCGATGCA+CGG + chr4_4:59644139-59644158 Msa0691490:three_prime_UTR 60.0%
! TGTAACCCGTGCCGATGCAC+GGG + chr4_4:59644140-59644159 Msa0691490:three_prime_UTR 60.0%
! AGTCAACCCGTGCATCGGCA+CGG - chr4_4:59644149-59644168 None:intergenic 60.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_4:59644148-59644167 None:intergenic 65.0%
! GTCAACCCGTGCATCGGCAC+GGG - chr4_4:59644148-59644167 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59642403 59644211 59642403 ID=Msa0691490;Name=Msa0691490
chr4_4 mRNA 59642403 59644211 59642403 ID=Msa0691490-mRNA-1;Parent=Msa0691490;Name=Msa0691490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.5|1|1|1|2|259|366
chr4_4 exon 59642403 59643209 59642403 ID=Msa0691490-mRNA-1:exon:16242;Parent=Msa0691490-mRNA-1
chr4_4 exon 59643659 59644211 59643659 ID=Msa0691490-mRNA-1:exon:16243;Parent=Msa0691490-mRNA-1
chr4_4 CDS 59642403 59643209 59642403 ID=Msa0691490-mRNA-1:cds;Parent=Msa0691490-mRNA-1
chr4_4 CDS 59643659 59643952 59643659 ID=Msa0691490-mRNA-1:cds;Parent=Msa0691490-mRNA-1
chr4_4 three_prime_UTR 59643953 59644211 59643953 ID=Msa0691490-mRNA-1:three_prime_utr;Parent=Msa0691490-mRNA-1
Gene Sequence

>Msa0691490

ATGAACCAAGTAGAAGAGACGATAGTTGAGGAATCAAAACCAATGGGATCCCAAAGTGAAGATCATGTTGCAAAATTGCTTCAAGCTCAAACCCAAGTATTCAACCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTGTATACCAGATGTTATACACAACTATGGCCAACCAATCCCACTCTCAAAACTCATTTCTTTGTTACCAATCCACCCTTCTAAAACCGGTGACATATATCGTTTGATGCGAGTTTTAACACATTCTGGTTTCTTCAATGTCTCTAAAAATGATATAGAAGTGATGTATGAACTTAACGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGCATGACATCTATTTTACATGTCATACATGGTCCGGTTTTGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACCGAAAATAACGGTGTTGCATTTTGGGATTATGCTAGCCATGACCCTAATCACAATAATTTGTTCAATGAAGCTATGGCTTGTGAAACTAAATTGGCTTCTAGTGTTGTGATGGGAAAGTGTAAAGGGGTGTTTGAAGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACTATTACTAAGGTCATTGCTAAGTCATTCCCAAACATTGAGTGCATTGTATTTGATCTTCCACATGTTGTTGATGGCTTACAAGGAAGTGAAAACTTAAAATATGTTGGAGGTGACATGTTTGAAGCAATTCCTCCTACCCATTCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGCTTGAAAATACTCAAAAAATGCAAGGAAGCAATAAGGAGCAAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAGGAAGACAATGATACAATTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCCAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCCCTAG
Protein sequence

>Msa0691490

MNQVEETIVEESKPMGSQSEDHVAKLLQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIYRLMRVLTHSGFFNVSKNDIEVMYELNDASRLLLKDHPFSMTSILHVIHGPVLSKPWYQLSNWYKNDDPSPFHTENNGVAFWDYASHDPNHNNLFNEAMACETKLASSVVMGKCKGVFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIRSKGKVIIIDAVMGNEKEDNDTIEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP*