Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608730 | XP_003607570.1 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 5.40e-179 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608730 | sp|Q9S7Y1|BH030_ARATH | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.93e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0608730 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608730 | Msa0649170 | 0.894591 | 2.136213e-75 | -8.615850e-47 |
| Msa0608730 | Msa1444790 | 0.916288 | 2.133131e-85 | -8.615850e-47 |
| Msa0555220 | Msa0608730 | 0.905668 | 3.364842e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608730 | MtrunA17_Chr4g0041051 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| Msa0608730 | MtrunA17_Chr2g0325521 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 3.55e-114 | 328 |
| Msa0608730 | MtrunA17_Chr4g0045901 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 9.05e-43 | 146 |
| Msa0608730 | MtrunA17_Chr7g0255961 | 41.294 | 201 | 101 | 5 | 47 | 246 | 58 | 242 | 4.06e-37 | 131 |
| Msa0608730 | MtrunA17_Chr1g0198801 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 2.40e-34 | 126 |
| Msa0608730 | MtrunA17_Chr3g0113721 | 38.265 | 196 | 106 | 4 | 64 | 248 | 31 | 222 | 4.73e-34 | 122 |
| Msa0608730 | MtrunA17_Chr5g0412371 | 35.897 | 156 | 90 | 2 | 60 | 209 | 33 | 184 | 1.61e-25 | 100 |
| Msa0608730 | MtrunA17_Chr5g0427361 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 6.30e-21 | 89.0 |
| Msa0608730 | MtrunA17_Chr2g0283714 | 53.846 | 78 | 33 | 1 | 104 | 181 | 16 | 90 | 4.26e-20 | 83.6 |
| Msa0608730 | MtrunA17_Chr5g0400621 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 9.00e-12 | 64.3 |
| Msa0608730 | MtrunA17_Chr8g0365711 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 4.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608730 | AT1G68810.1 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 5.01e-33 | 124 |
| Msa0608730 | AT3G56770.1 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.85e-28 | 108 |
| Msa0608730 | AT3G25710.1 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.23e-28 | 109 |
| Msa0608730 | AT2G40200.1 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.17e-26 | 103 |
| Msa0608730 | AT2G41130.1 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.87e-25 | 100 |
| Msa0608730 | AT4G38070.1 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.82e-17 | 79.0 |
| Msa0608730 | AT4G37850.2 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
| Msa0608730 | AT4G37850.1 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4_2:-55944719 | Msa0608730:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4_2:-55944811 | Msa0608730:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4_2:-55943260 | Msa0608730:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4_2:-55943051 | Msa0608730:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4_2:+55943147 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4_2:-55944725 | Msa0608730:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4_2:-55944754 | Msa0608730:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4_2:-55944677 | Msa0608730:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4_2:-55942967 | Msa0608730:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4_2:-55944742 | Msa0608730:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4_2:+55943204 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4_2:-55944542 | Msa0608730:intron |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4_2:-55944790 | Msa0608730:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4_2:-55944827 | Msa0608730:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4_2:-55944553 | Msa0608730:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4_2:-55944828 | Msa0608730:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4_2:-55943174 | Msa0608730:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4_2:-55942934 | Msa0608730:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4_2:-55944748 | Msa0608730:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4_2:-55943179 | Msa0608730:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4_2:-55943187 | Msa0608730:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4_2:+55943108 | None:intergenic |
| CCTGTTAAAATGGAAGGAAA+AGG | 0.530795 | 4_2:-55944667 | Msa0608730:CDS |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4_2:-55944673 | Msa0608730:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4_2:-55943126 | Msa0608730:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4_2:-55944826 | Msa0608730:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4_2:-55943294 | Msa0608730:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4_2:-55944594 | Msa0608730:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4_2:-55943289 | Msa0608730:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4_2:+55942935 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4_2:-55944606 | Msa0608730:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4_2:+55944535 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4_2:-55944692 | Msa0608730:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4_2:-55944838 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4_2:-55943220 | Msa0608730:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4_2:-55943237 | Msa0608730:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4_2:-55944609 | Msa0608730:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4_2:-55944617 | Msa0608730:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4_2:-55943183 | Msa0608730:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4_2:-55943186 | Msa0608730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTAATAACCAATTATAT+TGG | - | chr4_2:55943282-55943301 | Msa0608730:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | chr4_2:55944030-55944049 | Msa0608730:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | chr4_2:55944068-55944087 | Msa0608730:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | - | chr4_2:55943282-55943301 | Msa0608730:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | chr4_2:55944030-55944049 | Msa0608730:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | chr4_2:55944068-55944087 | Msa0608730:intron | 15.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | chr4_2:55943184-55943203 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | chr4_2:55943233-55943252 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | chr4_2:55943533-55943552 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | chr4_2:55943602-55943621 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | chr4_2:55943748-55943767 | Msa0608730:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | chr4_2:55943855-55943874 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | chr4_2:55944012-55944031 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | chr4_2:55944024-55944043 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | chr4_2:55944082-55944101 | None:intergenic | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | chr4_2:55943184-55943203 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | chr4_2:55943233-55943252 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | chr4_2:55943533-55943552 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | chr4_2:55943602-55943621 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | chr4_2:55943748-55943767 | Msa0608730:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | chr4_2:55943855-55943874 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | chr4_2:55944012-55944031 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | chr4_2:55944024-55944043 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | chr4_2:55944082-55944101 | None:intergenic | 20.0% |
| ! | ATACTTCACACCAATATAAT+TGG | + | chr4_2:55943295-55943314 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | - | chr4_2:55943455-55943474 | Msa0608730:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | chr4_2:55943663-55943682 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | chr4_2:55943747-55943766 | Msa0608730:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | chr4_2:55943983-55944002 | Msa0608730:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | chr4_2:55944113-55944132 | Msa0608730:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | chr4_2:55944114-55944133 | Msa0608730:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | chr4_2:55944204-55944223 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | chr4_2:55944528-55944547 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | chr4_2:55944567-55944586 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | + | chr4_2:55943295-55943314 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | - | chr4_2:55943455-55943474 | Msa0608730:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | chr4_2:55943663-55943682 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | chr4_2:55943747-55943766 | Msa0608730:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | chr4_2:55943983-55944002 | Msa0608730:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | chr4_2:55944113-55944132 | Msa0608730:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | chr4_2:55944114-55944133 | Msa0608730:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | chr4_2:55944204-55944223 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | chr4_2:55944528-55944547 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | chr4_2:55944567-55944586 | None:intergenic | 25.0% |
| GATTGGGGTTATGATATATT+TGG | - | chr4_2:55942861-55942880 | Msa0608730:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | chr4_2:55942891-55942910 | Msa0608730:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | chr4_2:55942911-55942930 | Msa0608730:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | chr4_2:55942918-55942937 | Msa0608730:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | chr4_2:55942947-55942966 | Msa0608730:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | chr4_2:55942953-55942972 | Msa0608730:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | chr4_2:55942959-55942978 | Msa0608730:CDS | 30.0% |
| AAAGTCATTTACTCCATGTT+TGG | - | chr4_2:55943201-55943220 | Msa0608730:CDS | 30.0% | |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | chr4_2:55943217-55943236 | None:intergenic | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | + | chr4_2:55943332-55943351 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | chr4_2:55943346-55943365 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+TGG | + | chr4_2:55943599-55943618 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | chr4_2:55943682-55943701 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | chr4_2:55943683-55943702 | Msa0608730:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | chr4_2:55943684-55943703 | Msa0608730:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | chr4_2:55943723-55943742 | Msa0608730:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | chr4_2:55943733-55943752 | Msa0608730:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | chr4_2:55943796-55943815 | Msa0608730:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | chr4_2:55943849-55943868 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | chr4_2:55943905-55943924 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | chr4_2:55943912-55943931 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | chr4_2:55943916-55943935 | Msa0608730:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | chr4_2:55943917-55943936 | Msa0608730:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | chr4_2:55943982-55944001 | Msa0608730:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | chr4_2:55943984-55944003 | Msa0608730:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | chr4_2:55944115-55944134 | Msa0608730:intron | 30.0% | |
| GTTGAAAAGATATATACGAG+AGG | + | chr4_2:55944247-55944266 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | chr4_2:55944359-55944378 | Msa0608730:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | chr4_2:55944412-55944431 | Msa0608730:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | chr4_2:55944452-55944471 | Msa0608730:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | chr4_2:55944471-55944490 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | chr4_2:55944621-55944640 | Msa0608730:CDS | 30.0% |
| GATTGGGGTTATGATATATT+TGG | - | chr4_2:55942861-55942880 | Msa0608730:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | chr4_2:55942891-55942910 | Msa0608730:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | chr4_2:55942911-55942930 | Msa0608730:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | chr4_2:55942918-55942937 | Msa0608730:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | chr4_2:55942947-55942966 | Msa0608730:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | chr4_2:55942953-55942972 | Msa0608730:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | chr4_2:55942959-55942978 | Msa0608730:CDS | 30.0% |
| AAAGTCATTTACTCCATGTT+TGG | - | chr4_2:55943201-55943220 | Msa0608730:CDS | 30.0% | |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | chr4_2:55943217-55943236 | None:intergenic | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | + | chr4_2:55943332-55943351 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | chr4_2:55943346-55943365 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+TGG | + | chr4_2:55943599-55943618 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | chr4_2:55943682-55943701 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | chr4_2:55943683-55943702 | Msa0608730:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | chr4_2:55943684-55943703 | Msa0608730:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | chr4_2:55943723-55943742 | Msa0608730:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | chr4_2:55943733-55943752 | Msa0608730:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | chr4_2:55943796-55943815 | Msa0608730:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | chr4_2:55943849-55943868 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | chr4_2:55943905-55943924 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | chr4_2:55943912-55943931 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | chr4_2:55943916-55943935 | Msa0608730:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | chr4_2:55943917-55943936 | Msa0608730:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | chr4_2:55943982-55944001 | Msa0608730:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | chr4_2:55943984-55944003 | Msa0608730:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | chr4_2:55944115-55944134 | Msa0608730:intron | 30.0% | |
| GTTGAAAAGATATATACGAG+AGG | + | chr4_2:55944247-55944266 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | chr4_2:55944359-55944378 | Msa0608730:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | chr4_2:55944412-55944431 | Msa0608730:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | chr4_2:55944452-55944471 | Msa0608730:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | chr4_2:55944471-55944490 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | chr4_2:55944621-55944640 | Msa0608730:CDS | 30.0% |
| TGGAAATGGAAGGTTATGAT+TGG | - | chr4_2:55942844-55942863 | Msa0608730:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | chr4_2:55942845-55942864 | Msa0608730:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | chr4_2:55942846-55942865 | Msa0608730:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | chr4_2:55942924-55942943 | Msa0608730:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | chr4_2:55942958-55942977 | Msa0608730:CDS | 35.0% |
| !! | CCTTTTCCTTCCATTTTAAC+AGG | + | chr4_2:55943008-55943027 | None:intergenic | 35.0% |
| CCTGTTAAAATGGAAGGAAA+AGG | - | chr4_2:55943005-55943024 | Msa0608730:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | chr4_2:55943055-55943074 | Msa0608730:CDS | 35.0% |
| ATCTAACTAGTCACCTTTAG+TGG | - | chr4_2:55943353-55943372 | Msa0608730:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | chr4_2:55943354-55943373 | Msa0608730:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | chr4_2:55943384-55943403 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | chr4_2:55943385-55943404 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | chr4_2:55943389-55943408 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | chr4_2:55943422-55943441 | Msa0608730:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | chr4_2:55943427-55943446 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | + | chr4_2:55943590-55943609 | None:intergenic | 35.0% |
| GACAACCTAAGCTAGTTATT+TGG | - | chr4_2:55943674-55943693 | Msa0608730:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | chr4_2:55943698-55943717 | Msa0608730:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | chr4_2:55943699-55943718 | Msa0608730:intron | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | - | chr4_2:55943953-55943972 | Msa0608730:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | chr4_2:55944119-55944138 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | chr4_2:55944158-55944177 | Msa0608730:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | chr4_2:55944172-55944191 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | chr4_2:55944365-55944384 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | chr4_2:55944378-55944397 | Msa0608730:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | chr4_2:55944485-55944504 | Msa0608730:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | chr4_2:55944486-55944505 | Msa0608730:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | chr4_2:55944546-55944565 | Msa0608730:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | chr4_2:55944758-55944777 | Msa0608730:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | chr4_2:55944784-55944803 | Msa0608730:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | chr4_2:55944787-55944806 | Msa0608730:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | - | chr4_2:55942844-55942863 | Msa0608730:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | chr4_2:55942845-55942864 | Msa0608730:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | chr4_2:55942846-55942865 | Msa0608730:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | chr4_2:55942924-55942943 | Msa0608730:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | chr4_2:55942958-55942977 | Msa0608730:CDS | 35.0% |
| !! | CCTTTTCCTTCCATTTTAAC+AGG | + | chr4_2:55943008-55943027 | None:intergenic | 35.0% |
| CCTGTTAAAATGGAAGGAAA+AGG | - | chr4_2:55943005-55943024 | Msa0608730:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | chr4_2:55943055-55943074 | Msa0608730:CDS | 35.0% |
| ATCTAACTAGTCACCTTTAG+TGG | - | chr4_2:55943353-55943372 | Msa0608730:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | chr4_2:55943354-55943373 | Msa0608730:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | chr4_2:55943384-55943403 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | chr4_2:55943385-55943404 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | chr4_2:55943389-55943408 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | chr4_2:55943422-55943441 | Msa0608730:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | chr4_2:55943427-55943446 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | + | chr4_2:55943590-55943609 | None:intergenic | 35.0% |
| GACAACCTAAGCTAGTTATT+TGG | - | chr4_2:55943674-55943693 | Msa0608730:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | chr4_2:55943698-55943717 | Msa0608730:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | chr4_2:55943699-55943718 | Msa0608730:intron | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | - | chr4_2:55943953-55943972 | Msa0608730:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | chr4_2:55944119-55944138 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | chr4_2:55944158-55944177 | Msa0608730:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | chr4_2:55944172-55944191 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | chr4_2:55944365-55944384 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | chr4_2:55944378-55944397 | Msa0608730:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | chr4_2:55944485-55944504 | Msa0608730:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | chr4_2:55944486-55944505 | Msa0608730:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | chr4_2:55944546-55944565 | Msa0608730:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | chr4_2:55944758-55944777 | Msa0608730:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | chr4_2:55944784-55944803 | Msa0608730:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | chr4_2:55944787-55944806 | Msa0608730:CDS | 35.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | chr4_2:55942930-55942949 | Msa0608730:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | chr4_2:55942995-55943014 | Msa0608730:CDS | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | chr4_2:55943386-55943405 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | chr4_2:55943399-55943418 | Msa0608730:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | chr4_2:55943405-55943424 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | chr4_2:55943406-55943425 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | chr4_2:55943779-55943798 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | - | chr4_2:55943932-55943951 | Msa0608730:intron | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | + | chr4_2:55943966-55943985 | None:intergenic | 40.0% | |
| !! | CCATACTAGTTGGTAGTAAC+TGG | - | chr4_2:55943963-55943982 | Msa0608730:intron | 40.0% |
| TAGTTATGTATTGGGGAGTC+CGG | - | chr4_2:55944122-55944141 | Msa0608730:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | chr4_2:55944185-55944204 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | chr4_2:55944383-55944402 | Msa0608730:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | chr4_2:55944435-55944454 | Msa0608730:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | chr4_2:55944624-55944643 | Msa0608730:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | chr4_2:55944705-55944724 | Msa0608730:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | chr4_2:55944740-55944759 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | chr4_2:55944738-55944757 | Msa0608730:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | chr4_2:55942930-55942949 | Msa0608730:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | chr4_2:55942995-55943014 | Msa0608730:CDS | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | chr4_2:55943386-55943405 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | chr4_2:55943399-55943418 | Msa0608730:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | chr4_2:55943405-55943424 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | chr4_2:55943406-55943425 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | chr4_2:55943779-55943798 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | - | chr4_2:55943932-55943951 | Msa0608730:intron | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | + | chr4_2:55943966-55943985 | None:intergenic | 40.0% | |
| !! | CCATACTAGTTGGTAGTAAC+TGG | - | chr4_2:55943963-55943982 | Msa0608730:intron | 40.0% |
| TAGTTATGTATTGGGGAGTC+CGG | - | chr4_2:55944122-55944141 | Msa0608730:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | chr4_2:55944185-55944204 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | chr4_2:55944383-55944402 | Msa0608730:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | chr4_2:55944435-55944454 | Msa0608730:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | chr4_2:55944624-55944643 | Msa0608730:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | chr4_2:55944705-55944724 | Msa0608730:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | chr4_2:55944740-55944759 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | chr4_2:55944738-55944757 | Msa0608730:CDS | 40.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | chr4_2:55942882-55942901 | Msa0608730:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | chr4_2:55942966-55942985 | Msa0608730:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | chr4_2:55942967-55942986 | Msa0608730:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | chr4_2:55942999-55943018 | Msa0608730:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | chr4_2:55943063-55943082 | Msa0608730:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | chr4_2:55943119-55943138 | Msa0608730:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | chr4_2:55943130-55943149 | Msa0608730:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | chr4_2:55943140-55943159 | None:intergenic | 45.0% |
| ATTAGTCATCGGCAACAACG+CGG | + | chr4_2:55943321-55943340 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | chr4_2:55943703-55943722 | Msa0608730:intron | 45.0% | |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | + | chr4_2:55943837-55943856 | None:intergenic | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | chr4_2:55944123-55944142 | Msa0608730:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | chr4_2:55944144-55944163 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | chr4_2:55944493-55944512 | Msa0608730:intron | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | chr4_2:55942882-55942901 | Msa0608730:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | chr4_2:55942966-55942985 | Msa0608730:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | chr4_2:55942967-55942986 | Msa0608730:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | chr4_2:55942999-55943018 | Msa0608730:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | chr4_2:55943063-55943082 | Msa0608730:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | chr4_2:55943119-55943138 | Msa0608730:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | chr4_2:55943130-55943149 | Msa0608730:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | chr4_2:55943140-55943159 | None:intergenic | 45.0% |
| ATTAGTCATCGGCAACAACG+CGG | + | chr4_2:55943321-55943340 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | chr4_2:55943703-55943722 | Msa0608730:intron | 45.0% | |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | + | chr4_2:55943837-55943856 | None:intergenic | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | chr4_2:55944123-55944142 | Msa0608730:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | chr4_2:55944144-55944163 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | chr4_2:55944493-55944512 | Msa0608730:intron | 45.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | chr4_2:55942968-55942987 | Msa0608730:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | chr4_2:55943066-55943085 | Msa0608730:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | + | chr4_2:55943828-55943847 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | chr4_2:55944489-55944508 | Msa0608730:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | chr4_2:55944498-55944517 | Msa0608730:intron | 50.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | chr4_2:55942968-55942987 | Msa0608730:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | chr4_2:55943066-55943085 | Msa0608730:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | + | chr4_2:55943828-55943847 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | chr4_2:55944489-55944508 | Msa0608730:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | chr4_2:55944498-55944517 | Msa0608730:intron | 50.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | chr4_2:55943078-55943097 | Msa0608730:CDS | 55.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | chr4_2:55943078-55943097 | Msa0608730:CDS | 55.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | chr4_2:55942980-55942999 | Msa0608730:CDS | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | + | chr4_2:55943318-55943337 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | chr4_2:55943369-55943388 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | chr4_2:55942980-55942999 | Msa0608730:CDS | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | + | chr4_2:55943318-55943337 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | chr4_2:55943369-55943388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55942843 | 55944851 | 55942843 | ID=Msa0608730;Name=Msa0608730 |
| chr4_2 | mRNA | 55942843 | 55944851 | 55942843 | ID=Msa0608730-mRNA-1;Parent=Msa0608730;Name=Msa0608730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|260 |
| chr4_2 | exon | 55944543 | 55944851 | 55944543 | ID=Msa0608730-mRNA-1:exon:14328;Parent=Msa0608730-mRNA-1 |
| chr4_2 | exon | 55942843 | 55943316 | 55942843 | ID=Msa0608730-mRNA-1:exon:14327;Parent=Msa0608730-mRNA-1 |
| chr4_2 | CDS | 55944543 | 55944851 | 55944543 | ID=Msa0608730-mRNA-1:cds;Parent=Msa0608730-mRNA-1 |
| chr4_2 | CDS | 55942843 | 55943316 | 55942843 | ID=Msa0608730-mRNA-1:cds;Parent=Msa0608730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
