Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555220 | XP_003607570.1 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 5.40e-179 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555220 | sp|Q9S7Y1|BH030_ARATH | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.93e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555220 | G7JCJ8 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 2.58e-179 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0555220 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0555220 | Msa0608730 | 0.905668 | 3.364842e-80 | -8.615850e-47 |
| Msa0555220 | Msa0649170 | 0.984296 | 3.767322e-160 | -8.615850e-47 |
| Msa0555220 | Msa0734250 | 0.800095 | 1.692245e-48 | -8.615850e-47 |
| Msa0555220 | Msa1444790 | 0.984537 | 7.509707e-161 | -8.615850e-47 |
| Msa0555220 | Msa1445910 | -0.800584 | 1.345689e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555220 | MtrunA17_Chr4g0041051 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| Msa0555220 | MtrunA17_Chr2g0325521 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 3.55e-114 | 328 |
| Msa0555220 | MtrunA17_Chr4g0045901 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 9.05e-43 | 146 |
| Msa0555220 | MtrunA17_Chr7g0255961 | 41.294 | 201 | 101 | 5 | 47 | 246 | 58 | 242 | 4.06e-37 | 131 |
| Msa0555220 | MtrunA17_Chr1g0198801 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 2.40e-34 | 126 |
| Msa0555220 | MtrunA17_Chr3g0113721 | 38.265 | 196 | 106 | 4 | 64 | 248 | 31 | 222 | 4.73e-34 | 122 |
| Msa0555220 | MtrunA17_Chr5g0412371 | 35.897 | 156 | 90 | 2 | 60 | 209 | 33 | 184 | 1.61e-25 | 100 |
| Msa0555220 | MtrunA17_Chr5g0427361 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 6.30e-21 | 89.0 |
| Msa0555220 | MtrunA17_Chr2g0283714 | 53.846 | 78 | 33 | 1 | 104 | 181 | 16 | 90 | 4.26e-20 | 83.6 |
| Msa0555220 | MtrunA17_Chr5g0400621 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 9.00e-12 | 64.3 |
| Msa0555220 | MtrunA17_Chr8g0365711 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 4.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555220 | AT1G68810.1 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 5.01e-33 | 124 |
| Msa0555220 | AT3G56770.1 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.85e-28 | 108 |
| Msa0555220 | AT3G25710.1 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.23e-28 | 109 |
| Msa0555220 | AT2G40200.1 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.17e-26 | 103 |
| Msa0555220 | AT2G41130.1 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.87e-25 | 100 |
| Msa0555220 | AT4G38070.1 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.82e-17 | 79.0 |
| Msa0555220 | AT4G37850.2 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
| Msa0555220 | AT4G37850.1 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4_1:-53069708 | Msa0555220:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4_1:-53069800 | Msa0555220:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4_1:-53068232 | Msa0555220:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4_1:-53068023 | Msa0555220:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4_1:+53068119 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4_1:-53069714 | Msa0555220:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4_1:-53069743 | Msa0555220:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4_1:-53069666 | Msa0555220:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4_1:-53067939 | Msa0555220:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4_1:-53069731 | Msa0555220:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4_1:+53068176 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4_1:-53069531 | Msa0555220:intron |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4_1:-53069779 | Msa0555220:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4_1:-53069816 | Msa0555220:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4_1:-53069542 | Msa0555220:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4_1:-53069817 | Msa0555220:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4_1:-53068146 | Msa0555220:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4_1:-53067906 | Msa0555220:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4_1:-53069737 | Msa0555220:CDS |
| ACCTGTTAAAATGGAAGGAA+AGG | 0.510809 | 4_1:-53069657 | Msa0555220:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4_1:-53068151 | Msa0555220:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4_1:-53068159 | Msa0555220:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4_1:+53068080 | None:intergenic |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4_1:-53069662 | Msa0555220:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4_1:-53068098 | Msa0555220:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4_1:-53069815 | Msa0555220:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4_1:-53068266 | Msa0555220:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4_1:-53069583 | Msa0555220:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4_1:-53068261 | Msa0555220:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4_1:+53067907 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4_1:-53069595 | Msa0555220:CDS |
| CCTGTTAAAATGGAAGGAAA+GGG | 0.600881 | 4_1:-53069656 | Msa0555220:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4_1:+53069524 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4_1:-53069681 | Msa0555220:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4_1:-53069827 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4_1:-53068192 | Msa0555220:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4_1:-53068209 | Msa0555220:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4_1:-53069598 | Msa0555220:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4_1:-53069606 | Msa0555220:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4_1:-53068155 | Msa0555220:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4_1:-53068158 | Msa0555220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTAATAACCAATTATAT+TGG | - | chr4_1:53068254-53068273 | Msa0555220:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | chr4_1:53068969-53068988 | Msa0555220:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | chr4_1:53069007-53069026 | Msa0555220:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | - | chr4_1:53068254-53068273 | Msa0555220:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | chr4_1:53068969-53068988 | Msa0555220:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | chr4_1:53069007-53069026 | Msa0555220:intron | 15.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | chr4_1:53068156-53068175 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | chr4_1:53068205-53068224 | None:intergenic | 20.0% |
| !! | ATAATTCACACCAATATAAT+TGG | + | chr4_1:53068267-53068286 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | chr4_1:53068472-53068491 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | chr4_1:53068541-53068560 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | chr4_1:53068687-53068706 | Msa0555220:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | chr4_1:53068794-53068813 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | chr4_1:53068951-53068970 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | chr4_1:53068963-53068982 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | chr4_1:53069021-53069040 | None:intergenic | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | chr4_1:53068156-53068175 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | chr4_1:53068205-53068224 | None:intergenic | 20.0% |
| !! | ATAATTCACACCAATATAAT+TGG | + | chr4_1:53068267-53068286 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | chr4_1:53068472-53068491 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | chr4_1:53068541-53068560 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | chr4_1:53068687-53068706 | Msa0555220:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | chr4_1:53068794-53068813 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | chr4_1:53068951-53068970 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | chr4_1:53068963-53068982 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | chr4_1:53069021-53069040 | None:intergenic | 20.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | chr4_1:53068602-53068621 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | chr4_1:53068686-53068705 | Msa0555220:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | chr4_1:53068922-53068941 | Msa0555220:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | chr4_1:53069052-53069071 | Msa0555220:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | chr4_1:53069053-53069072 | Msa0555220:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | chr4_1:53069143-53069162 | None:intergenic | 25.0% |
| ! | TGTTGAATTTAAGTGTTAAG+TGG | + | chr4_1:53069237-53069256 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | chr4_1:53069517-53069536 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | chr4_1:53069556-53069575 | None:intergenic | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | chr4_1:53068602-53068621 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | chr4_1:53068686-53068705 | Msa0555220:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | chr4_1:53068922-53068941 | Msa0555220:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | chr4_1:53069052-53069071 | Msa0555220:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | chr4_1:53069053-53069072 | Msa0555220:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | chr4_1:53069143-53069162 | None:intergenic | 25.0% |
| ! | TGTTGAATTTAAGTGTTAAG+TGG | + | chr4_1:53069237-53069256 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | chr4_1:53069517-53069536 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | chr4_1:53069556-53069575 | None:intergenic | 25.0% |
| GATTGGGGTTATGATATATT+TGG | - | chr4_1:53067833-53067852 | Msa0555220:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | chr4_1:53067863-53067882 | Msa0555220:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | chr4_1:53067883-53067902 | Msa0555220:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | chr4_1:53067890-53067909 | Msa0555220:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | chr4_1:53067919-53067938 | Msa0555220:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | chr4_1:53067925-53067944 | Msa0555220:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | chr4_1:53067931-53067950 | Msa0555220:CDS | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | chr4_1:53068189-53068208 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | chr4_1:53068318-53068337 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+CGG | + | chr4_1:53068538-53068557 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | chr4_1:53068621-53068640 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | chr4_1:53068622-53068641 | Msa0555220:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | chr4_1:53068623-53068642 | Msa0555220:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | chr4_1:53068662-53068681 | Msa0555220:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | chr4_1:53068672-53068691 | Msa0555220:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | chr4_1:53068735-53068754 | Msa0555220:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | chr4_1:53068788-53068807 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | chr4_1:53068844-53068863 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | chr4_1:53068851-53068870 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | chr4_1:53068855-53068874 | Msa0555220:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | chr4_1:53068856-53068875 | Msa0555220:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | chr4_1:53068921-53068940 | Msa0555220:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | chr4_1:53068923-53068942 | Msa0555220:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | chr4_1:53069054-53069073 | Msa0555220:intron | 30.0% | |
| GAATGAAAGATATATACGAG+AGG | + | chr4_1:53069186-53069205 | None:intergenic | 30.0% | |
| CTCGTATATATCTTTCATTC+AGG | - | chr4_1:53069186-53069205 | Msa0555220:intron | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | chr4_1:53069348-53069367 | Msa0555220:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | chr4_1:53069401-53069420 | Msa0555220:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | chr4_1:53069441-53069460 | Msa0555220:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | chr4_1:53069460-53069479 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | chr4_1:53069610-53069629 | Msa0555220:CDS | 30.0% |
| GATTGGGGTTATGATATATT+TGG | - | chr4_1:53067833-53067852 | Msa0555220:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | chr4_1:53067863-53067882 | Msa0555220:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | chr4_1:53067883-53067902 | Msa0555220:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | chr4_1:53067890-53067909 | Msa0555220:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | chr4_1:53067919-53067938 | Msa0555220:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | chr4_1:53067925-53067944 | Msa0555220:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | chr4_1:53067931-53067950 | Msa0555220:CDS | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | chr4_1:53068189-53068208 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | chr4_1:53068318-53068337 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+CGG | + | chr4_1:53068538-53068557 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | chr4_1:53068621-53068640 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | chr4_1:53068622-53068641 | Msa0555220:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | chr4_1:53068623-53068642 | Msa0555220:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | chr4_1:53068662-53068681 | Msa0555220:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | chr4_1:53068672-53068691 | Msa0555220:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | chr4_1:53068735-53068754 | Msa0555220:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | chr4_1:53068788-53068807 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | chr4_1:53068844-53068863 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | chr4_1:53068851-53068870 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | chr4_1:53068855-53068874 | Msa0555220:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | chr4_1:53068856-53068875 | Msa0555220:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | chr4_1:53068921-53068940 | Msa0555220:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | chr4_1:53068923-53068942 | Msa0555220:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | chr4_1:53069054-53069073 | Msa0555220:intron | 30.0% | |
| GAATGAAAGATATATACGAG+AGG | + | chr4_1:53069186-53069205 | None:intergenic | 30.0% | |
| CTCGTATATATCTTTCATTC+AGG | - | chr4_1:53069186-53069205 | Msa0555220:intron | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | chr4_1:53069348-53069367 | Msa0555220:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | chr4_1:53069401-53069420 | Msa0555220:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | chr4_1:53069441-53069460 | Msa0555220:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | chr4_1:53069460-53069479 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | chr4_1:53069610-53069629 | Msa0555220:CDS | 30.0% |
| TGGAAATGGAAGGTTATGAT+TGG | - | chr4_1:53067816-53067835 | Msa0555220:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | chr4_1:53067817-53067836 | Msa0555220:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | chr4_1:53067818-53067837 | Msa0555220:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | chr4_1:53067896-53067915 | Msa0555220:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | chr4_1:53067930-53067949 | Msa0555220:CDS | 35.0% |
| ACCTGTTAAAATGGAAGGAA+AGG | - | chr4_1:53067976-53067995 | Msa0555220:CDS | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | - | chr4_1:53067977-53067996 | Msa0555220:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | chr4_1:53068027-53068046 | Msa0555220:CDS | 35.0% |
| AAAGCCATTAACTCCATGTT+TGG | - | chr4_1:53068173-53068192 | Msa0555220:CDS | 35.0% | |
| CTATCCAAACATGGAGTTAA+TGG | + | chr4_1:53068180-53068199 | None:intergenic | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | - | chr4_1:53068325-53068344 | Msa0555220:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | chr4_1:53068326-53068345 | Msa0555220:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | chr4_1:53068356-53068375 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | chr4_1:53068357-53068376 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | chr4_1:53068361-53068380 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | chr4_1:53068394-53068413 | Msa0555220:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | chr4_1:53068399-53068418 | None:intergenic | 35.0% | |
| GACAACCTAAGCTAGTTATT+TGG | - | chr4_1:53068613-53068632 | Msa0555220:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | chr4_1:53068637-53068656 | Msa0555220:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | chr4_1:53068638-53068657 | Msa0555220:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | chr4_1:53069058-53069077 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | chr4_1:53069097-53069116 | Msa0555220:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | chr4_1:53069111-53069130 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | chr4_1:53069354-53069373 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | chr4_1:53069367-53069386 | Msa0555220:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | chr4_1:53069474-53069493 | Msa0555220:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | chr4_1:53069475-53069494 | Msa0555220:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | chr4_1:53069535-53069554 | Msa0555220:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | chr4_1:53069747-53069766 | Msa0555220:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | chr4_1:53069773-53069792 | Msa0555220:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | chr4_1:53069776-53069795 | Msa0555220:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | - | chr4_1:53067816-53067835 | Msa0555220:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | chr4_1:53067817-53067836 | Msa0555220:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | chr4_1:53067818-53067837 | Msa0555220:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | chr4_1:53067896-53067915 | Msa0555220:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | chr4_1:53067930-53067949 | Msa0555220:CDS | 35.0% |
| ACCTGTTAAAATGGAAGGAA+AGG | - | chr4_1:53067976-53067995 | Msa0555220:CDS | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | - | chr4_1:53067977-53067996 | Msa0555220:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | chr4_1:53068027-53068046 | Msa0555220:CDS | 35.0% |
| AAAGCCATTAACTCCATGTT+TGG | - | chr4_1:53068173-53068192 | Msa0555220:CDS | 35.0% | |
| CTATCCAAACATGGAGTTAA+TGG | + | chr4_1:53068180-53068199 | None:intergenic | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | - | chr4_1:53068325-53068344 | Msa0555220:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | chr4_1:53068326-53068345 | Msa0555220:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | chr4_1:53068356-53068375 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | chr4_1:53068357-53068376 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | chr4_1:53068361-53068380 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | chr4_1:53068394-53068413 | Msa0555220:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | chr4_1:53068399-53068418 | None:intergenic | 35.0% | |
| GACAACCTAAGCTAGTTATT+TGG | - | chr4_1:53068613-53068632 | Msa0555220:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | chr4_1:53068637-53068656 | Msa0555220:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | chr4_1:53068638-53068657 | Msa0555220:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | chr4_1:53069058-53069077 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | chr4_1:53069097-53069116 | Msa0555220:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | chr4_1:53069111-53069130 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | chr4_1:53069354-53069373 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | chr4_1:53069367-53069386 | Msa0555220:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | chr4_1:53069474-53069493 | Msa0555220:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | chr4_1:53069475-53069494 | Msa0555220:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | chr4_1:53069535-53069554 | Msa0555220:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | chr4_1:53069747-53069766 | Msa0555220:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | chr4_1:53069773-53069792 | Msa0555220:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | chr4_1:53069776-53069795 | Msa0555220:CDS | 35.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | chr4_1:53067902-53067921 | Msa0555220:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | chr4_1:53067967-53067986 | Msa0555220:CDS | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | + | chr4_1:53067980-53067999 | None:intergenic | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | chr4_1:53068358-53068377 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | chr4_1:53068371-53068390 | Msa0555220:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | chr4_1:53068377-53068396 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | chr4_1:53068378-53068397 | None:intergenic | 40.0% | |
| AAACTGTTTGGCGGAACTTA+TGG | + | chr4_1:53068529-53068548 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | chr4_1:53068718-53068737 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGGAGAAGATGA+AGG | + | chr4_1:53068776-53068795 | None:intergenic | 40.0% |
| GTGTTGGGAGCTTGAAAATT+TGG | - | chr4_1:53068871-53068890 | Msa0555220:intron | 40.0% | |
| GGAGTATAAACCATGCTAGT+TGG | - | chr4_1:53068892-53068911 | Msa0555220:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | - | chr4_1:53069061-53069080 | Msa0555220:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | chr4_1:53069124-53069143 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | chr4_1:53069372-53069391 | Msa0555220:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | chr4_1:53069424-53069443 | Msa0555220:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | chr4_1:53069613-53069632 | Msa0555220:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | chr4_1:53069694-53069713 | Msa0555220:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | chr4_1:53069729-53069748 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | chr4_1:53069727-53069746 | Msa0555220:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | chr4_1:53067902-53067921 | Msa0555220:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | chr4_1:53067967-53067986 | Msa0555220:CDS | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | + | chr4_1:53067980-53067999 | None:intergenic | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | chr4_1:53068358-53068377 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | chr4_1:53068371-53068390 | Msa0555220:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | chr4_1:53068377-53068396 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | chr4_1:53068378-53068397 | None:intergenic | 40.0% | |
| AAACTGTTTGGCGGAACTTA+TGG | + | chr4_1:53068529-53068548 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | chr4_1:53068718-53068737 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGGAGAAGATGA+AGG | + | chr4_1:53068776-53068795 | None:intergenic | 40.0% |
| GTGTTGGGAGCTTGAAAATT+TGG | - | chr4_1:53068871-53068890 | Msa0555220:intron | 40.0% | |
| GGAGTATAAACCATGCTAGT+TGG | - | chr4_1:53068892-53068911 | Msa0555220:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | - | chr4_1:53069061-53069080 | Msa0555220:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | chr4_1:53069124-53069143 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | chr4_1:53069372-53069391 | Msa0555220:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | chr4_1:53069424-53069443 | Msa0555220:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | chr4_1:53069613-53069632 | Msa0555220:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | chr4_1:53069694-53069713 | Msa0555220:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | chr4_1:53069729-53069748 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | chr4_1:53069727-53069746 | Msa0555220:CDS | 40.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | chr4_1:53067854-53067873 | Msa0555220:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | chr4_1:53067938-53067957 | Msa0555220:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | chr4_1:53067939-53067958 | Msa0555220:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | chr4_1:53067971-53067990 | Msa0555220:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | chr4_1:53068035-53068054 | Msa0555220:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | chr4_1:53068091-53068110 | Msa0555220:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | chr4_1:53068102-53068121 | Msa0555220:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | chr4_1:53068112-53068131 | None:intergenic | 45.0% |
| AATTATCCACCGCGTTGTTG+CGG | - | chr4_1:53068281-53068300 | Msa0555220:intron | 45.0% | |
| ATTAGTCATCCGCAACAACG+CGG | + | chr4_1:53068293-53068312 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | chr4_1:53068642-53068661 | Msa0555220:intron | 45.0% | |
| ! | GGAGAAGATGAAGGCATACA+TGG | + | chr4_1:53068767-53068786 | None:intergenic | 45.0% |
| CCAGTTACTACCAACTAGCA+TGG | + | chr4_1:53068905-53068924 | None:intergenic | 45.0% | |
| !! | CCATGCTAGTTGGTAGTAAC+TGG | - | chr4_1:53068902-53068921 | Msa0555220:intron | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | chr4_1:53069062-53069081 | Msa0555220:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | chr4_1:53069083-53069102 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | chr4_1:53069482-53069501 | Msa0555220:intron | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | chr4_1:53067854-53067873 | Msa0555220:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | chr4_1:53067938-53067957 | Msa0555220:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | chr4_1:53067939-53067958 | Msa0555220:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | chr4_1:53067971-53067990 | Msa0555220:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | chr4_1:53068035-53068054 | Msa0555220:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | chr4_1:53068091-53068110 | Msa0555220:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | chr4_1:53068102-53068121 | Msa0555220:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | chr4_1:53068112-53068131 | None:intergenic | 45.0% |
| AATTATCCACCGCGTTGTTG+CGG | - | chr4_1:53068281-53068300 | Msa0555220:intron | 45.0% | |
| ATTAGTCATCCGCAACAACG+CGG | + | chr4_1:53068293-53068312 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | chr4_1:53068642-53068661 | Msa0555220:intron | 45.0% | |
| ! | GGAGAAGATGAAGGCATACA+TGG | + | chr4_1:53068767-53068786 | None:intergenic | 45.0% |
| CCAGTTACTACCAACTAGCA+TGG | + | chr4_1:53068905-53068924 | None:intergenic | 45.0% | |
| !! | CCATGCTAGTTGGTAGTAAC+TGG | - | chr4_1:53068902-53068921 | Msa0555220:intron | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | chr4_1:53069062-53069081 | Msa0555220:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | chr4_1:53069083-53069102 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | chr4_1:53069482-53069501 | Msa0555220:intron | 45.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | chr4_1:53067940-53067959 | Msa0555220:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | chr4_1:53068038-53068057 | Msa0555220:CDS | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | chr4_1:53069478-53069497 | Msa0555220:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | chr4_1:53069487-53069506 | Msa0555220:intron | 50.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | chr4_1:53067940-53067959 | Msa0555220:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | chr4_1:53068038-53068057 | Msa0555220:CDS | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | chr4_1:53069478-53069497 | Msa0555220:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | chr4_1:53069487-53069506 | Msa0555220:intron | 50.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | chr4_1:53068050-53068069 | Msa0555220:CDS | 55.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | chr4_1:53068050-53068069 | Msa0555220:CDS | 55.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | chr4_1:53067952-53067971 | Msa0555220:CDS | 60.0% | |
| AGTCATCCGCAACAACGCGG+TGG | + | chr4_1:53068290-53068309 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | chr4_1:53068341-53068360 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | chr4_1:53067952-53067971 | Msa0555220:CDS | 60.0% | |
| AGTCATCCGCAACAACGCGG+TGG | + | chr4_1:53068290-53068309 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | chr4_1:53068341-53068360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53067815 | 53069840 | 53067815 | ID=Msa0555220;Name=Msa0555220 |
| chr4_1 | mRNA | 53067815 | 53069840 | 53067815 | ID=Msa0555220-mRNA-1;Parent=Msa0555220;Name=Msa0555220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|260 |
| chr4_1 | exon | 53069532 | 53069840 | 53069532 | ID=Msa0555220-mRNA-1:exon:15397;Parent=Msa0555220-mRNA-1 |
| chr4_1 | exon | 53067815 | 53068288 | 53067815 | ID=Msa0555220-mRNA-1:exon:15396;Parent=Msa0555220-mRNA-1 |
| chr4_1 | CDS | 53069532 | 53069840 | 53069532 | ID=Msa0555220-mRNA-1:cds;Parent=Msa0555220-mRNA-1 |
| chr4_1 | CDS | 53067815 | 53068288 | 53067815 | ID=Msa0555220-mRNA-1:cds;Parent=Msa0555220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
