Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444790 | sp|Q9S7Y1|BH030_ARATH | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.93e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444790 | G7JCJ8 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 2.58e-179 | 502 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1444790 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1444790 | Msa1445910 | -0.807264 | 5.503306e-50 | -8.615850e-47 |
| Msa0608730 | Msa1444790 | 0.916288 | 2.133131e-85 | -8.615850e-47 |
| Msa0649170 | Msa1444790 | 0.979478 | 4.671836e-148 | -8.615850e-47 |
| Msa0555220 | Msa1444790 | 0.984537 | 7.509707e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444790 | MtrunA17_Chr4g0041051 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| Msa1444790 | MtrunA17_Chr2g0325521 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 3.55e-114 | 328 |
| Msa1444790 | MtrunA17_Chr4g0045901 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 9.05e-43 | 146 |
| Msa1444790 | MtrunA17_Chr7g0255961 | 41.294 | 201 | 101 | 5 | 47 | 246 | 58 | 242 | 4.06e-37 | 131 |
| Msa1444790 | MtrunA17_Chr1g0198801 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 2.40e-34 | 126 |
| Msa1444790 | MtrunA17_Chr3g0113721 | 38.265 | 196 | 106 | 4 | 64 | 248 | 31 | 222 | 4.73e-34 | 122 |
| Msa1444790 | MtrunA17_Chr5g0412371 | 35.897 | 156 | 90 | 2 | 60 | 209 | 33 | 184 | 1.61e-25 | 100 |
| Msa1444790 | MtrunA17_Chr5g0427361 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 6.30e-21 | 89.0 |
| Msa1444790 | MtrunA17_Chr2g0283714 | 53.846 | 78 | 33 | 1 | 104 | 181 | 16 | 90 | 4.26e-20 | 83.6 |
| Msa1444790 | MtrunA17_Chr5g0400621 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 9.00e-12 | 64.3 |
| Msa1444790 | MtrunA17_Chr8g0365711 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 4.06e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444790 | AT1G68810.1 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 5.01e-33 | 124 |
| Msa1444790 | AT3G56770.1 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.85e-28 | 108 |
| Msa1444790 | AT3G25710.1 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.23e-28 | 109 |
| Msa1444790 | AT2G40200.1 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.17e-26 | 103 |
| Msa1444790 | AT2G41130.1 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.87e-25 | 100 |
| Msa1444790 | AT4G38070.1 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.82e-17 | 79.0 |
| Msa1444790 | AT4G37850.2 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
| Msa1444790 | AT4G37850.1 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.42e-11 | 63.9 |
Find 41 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | tig0030819:-42982 | Msa1444790:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | tig0030819:-43074 | Msa1444790:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | tig0030819:-41523 | Msa1444790:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | tig0030819:-41314 | Msa1444790:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | tig0030819:+41410 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | tig0030819:-42988 | Msa1444790:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | tig0030819:-43017 | Msa1444790:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | tig0030819:-42940 | Msa1444790:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | tig0030819:-41230 | Msa1444790:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | tig0030819:-43005 | Msa1444790:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | tig0030819:+41467 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | tig0030819:-42805 | Msa1444790:intron |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | tig0030819:-43053 | Msa1444790:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | tig0030819:-43090 | Msa1444790:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | tig0030819:-42816 | Msa1444790:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | tig0030819:-43091 | Msa1444790:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | tig0030819:-41437 | Msa1444790:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | tig0030819:-41197 | Msa1444790:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | tig0030819:-43011 | Msa1444790:CDS |
| ACCTGTTAAAATGGAAGGAA+AGG | 0.510809 | tig0030819:-42931 | Msa1444790:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | tig0030819:-41442 | Msa1444790:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | tig0030819:-41450 | Msa1444790:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | tig0030819:+41371 | None:intergenic |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | tig0030819:-42936 | Msa1444790:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | tig0030819:-41389 | Msa1444790:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | tig0030819:-43089 | Msa1444790:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | tig0030819:-41557 | Msa1444790:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | tig0030819:-42857 | Msa1444790:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | tig0030819:-41552 | Msa1444790:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | tig0030819:+41198 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | tig0030819:-42869 | Msa1444790:CDS |
| CCTGTTAAAATGGAAGGAAA+GGG | 0.600881 | tig0030819:-42930 | Msa1444790:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | tig0030819:+42798 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | tig0030819:-42955 | Msa1444790:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | tig0030819:-43101 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | tig0030819:-41483 | Msa1444790:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | tig0030819:-41500 | Msa1444790:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | tig0030819:-42872 | Msa1444790:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | tig0030819:-42880 | Msa1444790:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | tig0030819:-41446 | Msa1444790:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | tig0030819:-41449 | Msa1444790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTAATAACCAATTATAT+TGG | - | tig0030819:41545-41564 | Msa1444790:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | tig0030819:42293-42312 | Msa1444790:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | tig0030819:42331-42350 | Msa1444790:intron | 15.0% |
| !! | TTCTTAATAACCAATTATAT+TGG | - | tig0030819:41545-41564 | Msa1444790:CDS | 15.0% |
| !!! | AGAGTATTTAATTGTTTTTA+TGG | - | tig0030819:42293-42312 | Msa1444790:intron | 15.0% |
| !! | GAATTATAATTCCTTAAAAA+TGG | - | tig0030819:42331-42350 | Msa1444790:intron | 15.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | tig0030819:41447-41466 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | tig0030819:41496-41515 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | tig0030819:41796-41815 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | tig0030819:41865-41884 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | tig0030819:42011-42030 | Msa1444790:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | tig0030819:42118-42137 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | tig0030819:42275-42294 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | tig0030819:42287-42306 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | tig0030819:42345-42364 | None:intergenic | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | + | tig0030819:41447-41466 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | + | tig0030819:41496-41515 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | + | tig0030819:41796-41815 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | + | tig0030819:41865-41884 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | - | tig0030819:42011-42030 | Msa1444790:intron | 20.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | + | tig0030819:42118-42137 | None:intergenic | 20.0% |
| !!! | CTTCTAAATGGTTTTATTAA+TGG | + | tig0030819:42275-42294 | None:intergenic | 20.0% |
| !! | CAATTAAATACTCTTCTAAA+TGG | + | tig0030819:42287-42306 | None:intergenic | 20.0% |
| !!! | ATTTCTATGATCCATTTTTA+AGG | + | tig0030819:42345-42364 | None:intergenic | 20.0% |
| ! | ATACTTCACACCAATATAAT+TGG | + | tig0030819:41558-41577 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | - | tig0030819:41718-41737 | Msa1444790:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | tig0030819:41926-41945 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | tig0030819:42010-42029 | Msa1444790:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | tig0030819:42246-42265 | Msa1444790:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | tig0030819:42376-42395 | Msa1444790:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | tig0030819:42377-42396 | Msa1444790:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | tig0030819:42467-42486 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | tig0030819:42791-42810 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | tig0030819:42830-42849 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | + | tig0030819:41558-41577 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | - | tig0030819:41718-41737 | Msa1444790:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | + | tig0030819:41926-41945 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | - | tig0030819:42010-42029 | Msa1444790:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | - | tig0030819:42246-42265 | Msa1444790:intron | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | - | tig0030819:42376-42395 | Msa1444790:intron | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | - | tig0030819:42377-42396 | Msa1444790:intron | 25.0% |
| ! | TTAAGTTTAGCATATAGATG+TGG | + | tig0030819:42467-42486 | None:intergenic | 25.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | + | tig0030819:42791-42810 | None:intergenic | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | + | tig0030819:42830-42849 | None:intergenic | 25.0% |
| GATTGGGGTTATGATATATT+TGG | - | tig0030819:41124-41143 | Msa1444790:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | tig0030819:41154-41173 | Msa1444790:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | tig0030819:41174-41193 | Msa1444790:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | tig0030819:41181-41200 | Msa1444790:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | tig0030819:41210-41229 | Msa1444790:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | tig0030819:41216-41235 | Msa1444790:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | tig0030819:41222-41241 | Msa1444790:CDS | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | tig0030819:41480-41499 | None:intergenic | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | + | tig0030819:41595-41614 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | tig0030819:41609-41628 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+TGG | + | tig0030819:41862-41881 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | tig0030819:41945-41964 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | tig0030819:41946-41965 | Msa1444790:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | tig0030819:41947-41966 | Msa1444790:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | tig0030819:41986-42005 | Msa1444790:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | tig0030819:41996-42015 | Msa1444790:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | tig0030819:42059-42078 | Msa1444790:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | tig0030819:42112-42131 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | tig0030819:42168-42187 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | tig0030819:42175-42194 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | tig0030819:42179-42198 | Msa1444790:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | tig0030819:42180-42199 | Msa1444790:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | tig0030819:42245-42264 | Msa1444790:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | tig0030819:42247-42266 | Msa1444790:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | tig0030819:42378-42397 | Msa1444790:intron | 30.0% | |
| GTTGAAAAGATATATACGAG+AGG | + | tig0030819:42510-42529 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | tig0030819:42622-42641 | Msa1444790:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | tig0030819:42675-42694 | Msa1444790:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | tig0030819:42715-42734 | Msa1444790:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | tig0030819:42734-42753 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | tig0030819:42884-42903 | Msa1444790:CDS | 30.0% |
| GATTGGGGTTATGATATATT+TGG | - | tig0030819:41124-41143 | Msa1444790:CDS | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | - | tig0030819:41154-41173 | Msa1444790:CDS | 30.0% | |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | - | tig0030819:41174-41193 | Msa1444790:CDS | 30.0% |
| GAAGTAAACAATGAGGTAAT+TGG | - | tig0030819:41181-41200 | Msa1444790:CDS | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | - | tig0030819:41210-41229 | Msa1444790:CDS | 30.0% | |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | - | tig0030819:41216-41235 | Msa1444790:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | - | tig0030819:41222-41241 | Msa1444790:CDS | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | + | tig0030819:41480-41499 | None:intergenic | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | + | tig0030819:41595-41614 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | + | tig0030819:41609-41628 | None:intergenic | 30.0% |
| ATATTTGTGAAACTGTTTGG+TGG | + | tig0030819:41862-41881 | None:intergenic | 30.0% | |
| ! | ATCAACCAAATAACTAGCTT+AGG | + | tig0030819:41945-41964 | None:intergenic | 30.0% |
| AGCTAGTTATTTGGTTGATT+AGG | - | tig0030819:41946-41965 | Msa1444790:intron | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | - | tig0030819:41947-41966 | Msa1444790:intron | 30.0% | |
| AGGTCAAATCAAACTTCAAA+TGG | - | tig0030819:41986-42005 | Msa1444790:intron | 30.0% | |
| AAACTTCAAATGGTGTAACA+TGG | - | tig0030819:41996-42015 | Msa1444790:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | - | tig0030819:42059-42078 | Msa1444790:intron | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | + | tig0030819:42112-42131 | None:intergenic | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | + | tig0030819:42168-42187 | None:intergenic | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | + | tig0030819:42175-42194 | None:intergenic | 30.0% | |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | - | tig0030819:42179-42198 | Msa1444790:intron | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | - | tig0030819:42180-42199 | Msa1444790:intron | 30.0% |
| CTGGTAAATGATCATATGTA+AGG | - | tig0030819:42245-42264 | Msa1444790:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | - | tig0030819:42247-42266 | Msa1444790:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | - | tig0030819:42378-42397 | Msa1444790:intron | 30.0% | |
| GTTGAAAAGATATATACGAG+AGG | + | tig0030819:42510-42529 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTATGACACAGA+TGG | - | tig0030819:42622-42641 | Msa1444790:intron | 30.0% |
| GACATTTGAAAGAGCTAAAA+AGG | - | tig0030819:42675-42694 | Msa1444790:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | - | tig0030819:42715-42734 | Msa1444790:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | + | tig0030819:42734-42753 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | - | tig0030819:42884-42903 | Msa1444790:CDS | 30.0% |
| TGGAAATGGAAGGTTATGAT+TGG | - | tig0030819:41107-41126 | Msa1444790:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | tig0030819:41108-41127 | Msa1444790:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | tig0030819:41109-41128 | Msa1444790:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | tig0030819:41187-41206 | Msa1444790:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | tig0030819:41221-41240 | Msa1444790:CDS | 35.0% |
| ACCTGTTAAAATGGAAGGAA+AGG | - | tig0030819:41267-41286 | Msa1444790:CDS | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | - | tig0030819:41268-41287 | Msa1444790:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | tig0030819:41318-41337 | Msa1444790:CDS | 35.0% |
| AAAGCCATTAACTCCATGTT+TGG | - | tig0030819:41464-41483 | Msa1444790:CDS | 35.0% | |
| CTATCCAAACATGGAGTTAA+TGG | + | tig0030819:41471-41490 | None:intergenic | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | - | tig0030819:41616-41635 | Msa1444790:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | tig0030819:41617-41636 | Msa1444790:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | tig0030819:41647-41666 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | tig0030819:41648-41667 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | tig0030819:41652-41671 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | tig0030819:41685-41704 | Msa1444790:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | tig0030819:41690-41709 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | + | tig0030819:41853-41872 | None:intergenic | 35.0% |
| GACAACCTAAGCTAGTTATT+TGG | - | tig0030819:41937-41956 | Msa1444790:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | tig0030819:41961-41980 | Msa1444790:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | tig0030819:41962-41981 | Msa1444790:intron | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | - | tig0030819:42216-42235 | Msa1444790:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | tig0030819:42382-42401 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | tig0030819:42421-42440 | Msa1444790:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | tig0030819:42435-42454 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | tig0030819:42628-42647 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | tig0030819:42641-42660 | Msa1444790:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | tig0030819:42748-42767 | Msa1444790:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | tig0030819:42749-42768 | Msa1444790:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | tig0030819:42809-42828 | Msa1444790:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | tig0030819:43021-43040 | Msa1444790:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | tig0030819:43047-43066 | Msa1444790:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | tig0030819:43050-43069 | Msa1444790:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | - | tig0030819:41107-41126 | Msa1444790:CDS | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | - | tig0030819:41108-41127 | Msa1444790:CDS | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | - | tig0030819:41109-41128 | Msa1444790:CDS | 35.0% | |
| AACAATGAGGTAATTGGAAG+TGG | - | tig0030819:41187-41206 | Msa1444790:CDS | 35.0% | |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | - | tig0030819:41221-41240 | Msa1444790:CDS | 35.0% |
| ACCTGTTAAAATGGAAGGAA+AGG | - | tig0030819:41267-41286 | Msa1444790:CDS | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+GGG | - | tig0030819:41268-41287 | Msa1444790:CDS | 35.0% | |
| !! | AGCTTTGAAGAATCATAGTG+AGG | - | tig0030819:41318-41337 | Msa1444790:CDS | 35.0% |
| AAAGCCATTAACTCCATGTT+TGG | - | tig0030819:41464-41483 | Msa1444790:CDS | 35.0% | |
| CTATCCAAACATGGAGTTAA+TGG | + | tig0030819:41471-41490 | None:intergenic | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | - | tig0030819:41616-41635 | Msa1444790:intron | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | - | tig0030819:41617-41636 | Msa1444790:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | + | tig0030819:41647-41666 | None:intergenic | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | + | tig0030819:41648-41667 | None:intergenic | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | + | tig0030819:41652-41671 | None:intergenic | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | - | tig0030819:41685-41704 | Msa1444790:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | + | tig0030819:41690-41709 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | + | tig0030819:41853-41872 | None:intergenic | 35.0% |
| GACAACCTAAGCTAGTTATT+TGG | - | tig0030819:41937-41956 | Msa1444790:intron | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | - | tig0030819:41961-41980 | Msa1444790:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | - | tig0030819:41962-41981 | Msa1444790:intron | 35.0% | |
| GGAGTATAAACCATACTAGT+TGG | - | tig0030819:42216-42235 | Msa1444790:intron | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | + | tig0030819:42382-42401 | None:intergenic | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | - | tig0030819:42421-42440 | Msa1444790:intron | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | + | tig0030819:42435-42454 | None:intergenic | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | + | tig0030819:42628-42647 | None:intergenic | 35.0% | |
| ! | ATGGACAAAGCATCATTACT+TGG | - | tig0030819:42641-42660 | Msa1444790:intron | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | - | tig0030819:42748-42767 | Msa1444790:intron | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | - | tig0030819:42749-42768 | Msa1444790:intron | 35.0% |
| CTATGTTGTGAATATCAACC+AGG | - | tig0030819:42809-42828 | Msa1444790:CDS | 35.0% | |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | - | tig0030819:43021-43040 | Msa1444790:CDS | 35.0% |
| TGCTAAGAGCAAGAAAAAGA+AGG | - | tig0030819:43047-43066 | Msa1444790:CDS | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | - | tig0030819:43050-43069 | Msa1444790:CDS | 35.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | tig0030819:41193-41212 | Msa1444790:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | tig0030819:41258-41277 | Msa1444790:CDS | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | + | tig0030819:41271-41290 | None:intergenic | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | tig0030819:41649-41668 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | tig0030819:41662-41681 | Msa1444790:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | tig0030819:41668-41687 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | tig0030819:41669-41688 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | tig0030819:42042-42061 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | - | tig0030819:42195-42214 | Msa1444790:intron | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | + | tig0030819:42229-42248 | None:intergenic | 40.0% | |
| !! | CCATACTAGTTGGTAGTAAC+TGG | - | tig0030819:42226-42245 | Msa1444790:intron | 40.0% |
| TAGTTATGTATTGGGGAGTC+CGG | - | tig0030819:42385-42404 | Msa1444790:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | tig0030819:42448-42467 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | tig0030819:42646-42665 | Msa1444790:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | tig0030819:42698-42717 | Msa1444790:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | tig0030819:42887-42906 | Msa1444790:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | tig0030819:42968-42987 | Msa1444790:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | tig0030819:43003-43022 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | tig0030819:43001-43020 | Msa1444790:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | - | tig0030819:41193-41212 | Msa1444790:CDS | 40.0% | |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | - | tig0030819:41258-41277 | Msa1444790:CDS | 40.0% |
| !! | CCCTTTCCTTCCATTTTAAC+AGG | + | tig0030819:41271-41290 | None:intergenic | 40.0% |
| CGGGAAAAACTTTGATTAGG+AGG | + | tig0030819:41649-41668 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | - | tig0030819:41662-41681 | Msa1444790:intron | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | + | tig0030819:41668-41687 | None:intergenic | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | + | tig0030819:41669-41688 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | + | tig0030819:42042-42061 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | - | tig0030819:42195-42214 | Msa1444790:intron | 40.0% | |
| CCAGTTACTACCAACTAGTA+TGG | + | tig0030819:42229-42248 | None:intergenic | 40.0% | |
| !! | CCATACTAGTTGGTAGTAAC+TGG | - | tig0030819:42226-42245 | Msa1444790:intron | 40.0% |
| TAGTTATGTATTGGGGAGTC+CGG | - | tig0030819:42385-42404 | Msa1444790:intron | 40.0% | |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | + | tig0030819:42448-42467 | None:intergenic | 40.0% |
| ! | CAAAGCATCATTACTTGGTG+AGG | - | tig0030819:42646-42665 | Msa1444790:intron | 40.0% |
| AATGAAGCACAAGCATGTGA+AGG | - | tig0030819:42698-42717 | Msa1444790:intron | 40.0% | |
| ! | GCAGATATTGCAACTTTTGG+AGG | - | tig0030819:42887-42906 | Msa1444790:CDS | 40.0% |
| GAATACAGACAGTTTCTTGC+TGG | - | tig0030819:42968-42987 | Msa1444790:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | + | tig0030819:43003-43022 | None:intergenic | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | - | tig0030819:43001-43020 | Msa1444790:CDS | 40.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | tig0030819:41145-41164 | Msa1444790:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | tig0030819:41229-41248 | Msa1444790:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | tig0030819:41230-41249 | Msa1444790:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | tig0030819:41262-41281 | Msa1444790:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | tig0030819:41326-41345 | Msa1444790:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | tig0030819:41382-41401 | Msa1444790:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | tig0030819:41393-41412 | Msa1444790:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | tig0030819:41403-41422 | None:intergenic | 45.0% |
| ATTAGTCATCGGCAACAACG+CGG | + | tig0030819:41584-41603 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | tig0030819:41966-41985 | Msa1444790:intron | 45.0% | |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | + | tig0030819:42100-42119 | None:intergenic | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | tig0030819:42386-42405 | Msa1444790:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | tig0030819:42407-42426 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | tig0030819:42756-42775 | Msa1444790:intron | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | - | tig0030819:41145-41164 | Msa1444790:CDS | 45.0% | |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | - | tig0030819:41229-41248 | Msa1444790:CDS | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | - | tig0030819:41230-41249 | Msa1444790:CDS | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | - | tig0030819:41262-41281 | Msa1444790:CDS | 45.0% |
| AGAATCATAGTGAGGCAGAG+AGG | - | tig0030819:41326-41345 | Msa1444790:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | - | tig0030819:41382-41401 | Msa1444790:CDS | 45.0% |
| TGTCATTCCAGGTGCTTTGA+AGG | - | tig0030819:41393-41412 | Msa1444790:CDS | 45.0% | |
| ! | GAACTAACCTTCAAAGCACC+TGG | + | tig0030819:41403-41422 | None:intergenic | 45.0% |
| ATTAGTCATCGGCAACAACG+CGG | + | tig0030819:41584-41603 | None:intergenic | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | - | tig0030819:41966-41985 | Msa1444790:intron | 45.0% | |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | + | tig0030819:42100-42119 | None:intergenic | 45.0% |
| AGTTATGTATTGGGGAGTCC+GGG | - | tig0030819:42386-42405 | Msa1444790:intron | 45.0% | |
| TGTAGTTTCTGACACTCTCC+CGG | + | tig0030819:42407-42426 | None:intergenic | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | - | tig0030819:42756-42775 | Msa1444790:intron | 45.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | tig0030819:41231-41250 | Msa1444790:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | tig0030819:41329-41348 | Msa1444790:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | + | tig0030819:42091-42110 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | tig0030819:42752-42771 | Msa1444790:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | tig0030819:42761-42780 | Msa1444790:intron | 50.0% | |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | - | tig0030819:41231-41250 | Msa1444790:CDS | 50.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | - | tig0030819:41329-41348 | Msa1444790:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | + | tig0030819:42091-42110 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | - | tig0030819:42752-42771 | Msa1444790:intron | 50.0% |
| GAACAAGAGGGAGGTTGGAA+TGG | - | tig0030819:42761-42780 | Msa1444790:intron | 50.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | tig0030819:41341-41360 | Msa1444790:CDS | 55.0% | |
| CAGAGAGGAGGAGAAGAGCT+AGG | - | tig0030819:41341-41360 | Msa1444790:CDS | 55.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | tig0030819:41243-41262 | Msa1444790:CDS | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | + | tig0030819:41581-41600 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | tig0030819:41632-41651 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | - | tig0030819:41243-41262 | Msa1444790:CDS | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | + | tig0030819:41581-41600 | None:intergenic | 60.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | + | tig0030819:41632-41651 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030819 | gene | 41106 | 43114 | 41106 | ID=Msa1444790;Name=Msa1444790 |
| tig0030819 | mRNA | 41106 | 43114 | 41106 | ID=Msa1444790-mRNA-1;Parent=Msa1444790;Name=Msa1444790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|260 |
| tig0030819 | exon | 42806 | 43114 | 42806 | ID=Msa1444790-mRNA-1:exon:14641;Parent=Msa1444790-mRNA-1 |
| tig0030819 | exon | 41106 | 41579 | 41106 | ID=Msa1444790-mRNA-1:exon:14640;Parent=Msa1444790-mRNA-1 |
| tig0030819 | CDS | 42806 | 43114 | 42806 | ID=Msa1444790-mRNA-1:cds;Parent=Msa1444790-mRNA-1 |
| tig0030819 | CDS | 41106 | 41579 | 41106 | ID=Msa1444790-mRNA-1:cds;Parent=Msa1444790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
