AlfalfaGEDB | Msa0609670

M. sativa cultivar zhongmu-4 / Msa0609670

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609670	AES89943.2	92.009	438	11	6	1	425	1	427	0.0	785

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609670	sp\|Q9SEZ4\|MY105_ARATH	77.397	146	25	2	76	213	74	219	4.55e-76	243

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0609670	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0527670	Msa0609670	0.890741	7.485996e-74	-8.615850e-47
Msa0609670	Msa0650490	0.860214	2.415084e-63	-8.615850e-47
Msa0609670	Msa0692250	0.903613	2.893192e-79	-8.615850e-47
Msa0609670	Msa1172630	0.813375	2.642741e-51	-8.615850e-47
Msa0609670	Msa1384380	0.894124	3.312513e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609670	MtrunA17_Chr4g0042501	91.686	421	11	6	1	408	1	410	0.0	750
Msa0609670	MtrunA17_Chr5g0417621	55.507	454	138	21	1	425	23	441	1.32e-140	409
Msa0609670	MtrunA17_Chr7g0254261	77.444	133	30	0	81	213	69	201	1.50e-70	226
Msa0609670	MtrunA17_Chr3g0125801	63.314	169	53	4	96	263	11	171	1.89e-62	203
Msa0609670	MtrunA17_Chr6g0480581	52.874	174	74	2	98	270	1	167	2.10e-59	194
Msa0609670	MtrunA17_Chr6g0460671	68.333	120	38	0	94	213	92	211	6.74e-56	188
Msa0609670	MtrunA17_Chr6g0460661	58.407	113	47	0	100	212	15	127	1.24e-44	152
Msa0609670	MtrunA17_Chr4g0008551	57.843	102	43	0	100	201	37	138	2.23e-38	142
Msa0609670	MtrunA17_Chr5g0401731	50.420	119	53	1	83	201	3	115	3.55e-38	140
Msa0609670	MtrunA17_Chr4g0053431	58.416	101	42	0	101	201	5	105	1.62e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609670	AT1G69560.1	77.397	146	25	2	76	213	74	219	4.62e-77	243
Msa0609670	AT1G69560.2	77.397	146	25	2	76	213	90	235	6.72e-77	243
Msa0609670	AT1G26780.1	88.034	117	14	0	98	214	95	211	3.78e-74	233
Msa0609670	AT1G26780.2	88.034	117	14	0	98	214	95	211	2.20e-73	234
Msa0609670	AT3G29020.1	75.214	117	29	0	96	212	60	176	4.32e-64	206
Msa0609670	AT3G29020.2	75.214	117	29	0	96	212	62	178	1.77e-63	207
Msa0609670	AT5G17800.1	79.817	109	22	0	96	204	88	196	9.58e-62	203
Msa0609670	AT1G17950.1	75.455	110	27	0	98	207	2	111	2.21e-59	194
Msa0609670	AT1G73410.1	77.982	109	24	0	98	206	3	111	3.05e-56	186
Msa0609670	AT1G73410.2	77.273	110	25	0	98	207	3	112	9.19e-56	183

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Find 113 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTTGCTGTTGGTGT+TGG	0.524679	4_2:+57052410	None:intergenic
AAAGAACTTGTTGCTCTTTA+TGG	0.054838	4_2:-57053619	Msa0609670:CDS
AAAGCTCTTCTATTAATCCT+TGG	0.450183	4_2:+57053417	None:intergenic
AAAGGATAGTTGCTCTACTT+TGG	0.430473	4_2:-57052032	Msa0609670:three_prime_UTR
AACAACAACAGTGATGATGG+TGG	0.670826	4_2:-57053799	Msa0609670:CDS
AACAATCAAGTGCTTACAGA+AGG	0.566019	4_2:-57053251	Msa0609670:CDS
AACAGTGATGATGGTGGGGA+AGG	0.545028	4_2:-57053793	Msa0609670:CDS
AACCTTCCAAATGGAACACT+TGG	0.485686	4_2:-57053114	Msa0609670:CDS
AACTTTGTGCAAGAGGTCAT+TGG	0.408066	4_2:-57053666	Msa0609670:CDS
AAGCAAGCACCTACTCCTAT+TGG	0.457882	4_2:-57052994	Msa0609670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGATTGCTATATCTCTA+AGG	-	chr4_2:57052009-57052028	Msa0609670:three_prime_UTR	30.0%
CTGACATAACTATTCTCATT+AGG	+	chr4_2:57052184-57052203	None:intergenic	30.0%
AATGAGAATAGTTATGTCAG+TGG	-	chr4_2:57052184-57052203	Msa0609670:CDS	30.0%
TATTAATCCTTGGATCCAAT+TGG	+	chr4_2:57052475-57052494	None:intergenic	30.0%
AAAGCTCTTCTATTAATCCT+TGG	+	chr4_2:57052485-57052504	None:intergenic	30.0%
ATGCAAGCTCATAGAATTTA+TGG	-	chr4_2:57052530-57052549	Msa0609670:intron	30.0%
ATAATGCTGTTAAGAATCAC+TGG	-	chr4_2:57052597-57052616	Msa0609670:intron	30.0%
TCAATCTGTTTACAGAAGAA+TGG	-	chr4_2:57052682-57052701	Msa0609670:intron	30.0%
AGGTTAATATAATAAGGTGG+TGG	+	chr4_2:57052770-57052789	None:intergenic	30.0%
GGAAGGTTAATATAATAAGG+TGG	+	chr4_2:57052773-57052792	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	57051944	57053977	57051944	ID=Msa0609670;Name=Msa0609670
chr4_2	mRNA	57051944	57053977	57051944	ID=Msa0609670-mRNA-1;Parent=Msa0609670;Name=Msa0609670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.33\|1\|1\|1\|3\|222\|425
chr4_2	exon	57051944	57052515	57051944	ID=Msa0609670-mRNA-1:exon:14831;Parent=Msa0609670-mRNA-1
chr4_2	exon	57052956	57053477	57052956	ID=Msa0609670-mRNA-1:exon:14830;Parent=Msa0609670-mRNA-1
chr4_2	exon	57053572	57053977	57053572	ID=Msa0609670-mRNA-1:exon:14829;Parent=Msa0609670-mRNA-1
chr4_2	CDS	57053572	57053977	57053572	ID=Msa0609670-mRNA-1:cds;Parent=Msa0609670-mRNA-1
chr4_2	CDS	57052956	57053477	57052956	ID=Msa0609670-mRNA-1:cds;Parent=Msa0609670-mRNA-1
chr4_2	CDS	57052166	57052515	57052166	ID=Msa0609670-mRNA-1:cds;Parent=Msa0609670-mRNA-1
chr4_2	three_prime_UTR	57051944	57052165	57051944	ID=Msa0609670-mRNA-1:three_prime_utr;Parent=Msa0609670-mRNA-1

Gene Sequence

>Msa0609670

ATGGGAATGGTCTATGCAAACATGGAGTCTTTATCACTAAACTATGCTGCTTCTTCTTCTTCATCTCAAGATTGCTATATCTCTAAGGAGGGTACTACTACTAATTGGTCTTTACCATTTATGAGGGAATGTTATATTGAAAGAAACTTTGAGGAAAACAACAACAGTGATGATGGTGGGGAAGGTAATGGTTCTGATTCTGGTGATGGTGTTGGAGAAAACAGTGAAAAAATTAACCCTAATGAGAATAGTTATGTCAGTGGTAAAGAGGTAGATACTGGTCACTCTAAACTTTGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAAAAGCTAGAAGGCAGATCAGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGATGAAGAGGAAGAAAGATTAATGCAAGCTCATAGAATTTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCAAGTGCTTACAGAAGGAGGAGGCTGAATCAATCTGTTTACAGAAGAATGGAAGAGAATACAAGCTTTGTCTCTAGGGATATAGTCACAGCCACAGGAATGGAACCAGTACCACCACCACCTTATTATATTAACCTTCCAAATGGAACACTTGGCTATAACATGGCTAGTTTTCCATATTCATCTTTCCATGGTGTAATTGATGGTGGTGTTGAGTGTGGCTTAAATGGTTCAACTGCAGTCTCAAGTGACAAGCAAGCACCTACTCCTATTGGCTTGTTTGCTCAACAGTCACCACTTGATTTCTTTTCTGGAGGTAGAAGAAATGAGTATTATAGCCAAATGAGAAGCTGGGATAGGCCAAGTGATTTACATGATAATCAACCAACACCAACACCAACACCAACAGCAAGTGGTTTCTACCATGAATATCCACAATATATGATGCCAATGCAACAACAAAACAACAATTTTTACAGTTTCTCATCAAATATTTCCACCACAGCAGCAGCAACAACAACAACAGTACAGATATTAGGCAGTGAAGTTTCACTATCATCAGTGGTAGCAGCAGAAAATCACAGAGATCAAGTTCTGATGAGTAATCCCCCTCCTTCAGATGCAATTCCATTTATTGACTTCCTTGGAGTAGGAGCTACATGA

Protein sequence

>Msa0609670

MGMVYANMESLSLNYAASSSSSQDCYISKEGTTTNWSLPFMRECYIERNFEENNNSDDGGEGNGSDSGDGVGENSEKINPNENSYVSGKEVDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSDEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRMEENTSFVSRDIVTATGMEPVPPPPYYINLPNGTLGYNMASFPYSSFHGVIDGGVECGLNGSTAVSSDKQAPTPIGLFAQQSPLDFFSGGRRNEYYSQMRSWDRPSDLHDNQPTPTPTPTASGFYHEYPQYMMPMQQQNNNFYSFSSNISTTAAATTTTVQILGSEVSLSSVVAAENHRDQVLMSNPPPSDAIPFIDFLGVGAT*