AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650490 MtrunA17_Chr4g0042501 91.449 421 12 6 1 408 1 410 0.0 748
Msa0650490 MtrunA17_Chr5g0417621 55.286 454 139 21 1 425 23 441 8.41e-140 407
Msa0650490 MtrunA17_Chr7g0254261 77.444 133 30 0 81 213 69 201 1.62e-70 226
Msa0650490 MtrunA17_Chr3g0125801 63.314 169 53 4 96 263 11 171 1.81e-62 203
Msa0650490 MtrunA17_Chr6g0480581 52.874 174 74 2 98 270 1 167 2.17e-59 194
Msa0650490 MtrunA17_Chr6g0460671 68.333 120 38 0 94 213 92 211 6.06e-56 188
Msa0650490 MtrunA17_Chr6g0460661 58.407 113 47 0 100 212 15 127 1.10e-44 152
Msa0650490 MtrunA17_Chr4g0008551 57.843 102 43 0 100 201 37 138 2.34e-38 142
Msa0650490 MtrunA17_Chr5g0401731 50.420 119 53 1 83 201 3 115 3.48e-38 140
Msa0650490 MtrunA17_Chr4g0053431 58.416 101 42 0 101 201 5 105 1.77e-37 137
Msa0650490 MtrunA17_Chr6g0454921 53.465 101 47 0 101 201 15 115 1.70e-34 127
Msa0650490 MtrunA17_Chr7g0238631 56.311 103 45 0 100 202 112 214 9.73e-34 132
Msa0650490 MtrunA17_Chr3g0133601 55.446 101 45 0 101 201 37 137 1.05e-33 125
Msa0650490 MtrunA17_Chr5g0429661 35.567 194 113 4 82 268 103 291 2.34e-32 125
Msa0650490 MtrunA17_Chr1g0157731 51.456 103 50 0 100 202 90 192 6.27e-31 125
Msa0650490 MtrunA17_Chr5g0437321 51.042 96 47 0 100 195 18 113 2.15e-30 118
Msa0650490 MtrunA17_Chr3g0139671 50.000 102 51 0 101 202 85 186 2.49e-30 124
Msa0650490 MtrunA17_Chr4g0058991 44.094 127 69 1 98 222 206 332 1.07e-28 117
Msa0650490 MtrunA17_Chr3g0103281 48.039 102 52 1 101 201 14 115 3.98e-27 110
Msa0650490 MtrunA17_Chr3g0117511 43.548 124 68 1 101 222 183 306 1.41e-26 111
Msa0650490 MtrunA17_Chr1g0187761 39.098 133 78 2 101 231 14 145 1.47e-26 107
Msa0650490 MtrunA17_Chr2g0323351 46.018 113 58 2 101 211 14 125 2.82e-26 106
Msa0650490 MtrunA17_Chr5g0397841 52.174 92 44 0 104 195 113 204 4.69e-26 109
Msa0650490 MtrunA17_Chr4g0022911 39.634 164 77 5 101 256 15 164 7.70e-26 106
Msa0650490 MtrunA17_Chr4g0055981 44.118 102 56 1 101 201 57 158 1.06e-25 104
Msa0650490 MtrunA17_Chr4g0022901 48.544 103 50 2 101 201 15 116 3.78e-25 103
Msa0650490 MtrunA17_Chr2g0309911 46.729 107 54 2 101 205 13 118 4.10e-25 104
Msa0650490 MtrunA17_Chr7g0228531 40.411 146 76 4 59 201 182 319 7.06e-25 105
Msa0650490 MtrunA17_Chr1g0203411 33.908 174 97 3 101 257 14 186 9.98e-25 103
Msa0650490 MtrunA17_Chr8g0342541 45.217 115 55 3 94 201 2 115 1.59e-24 103
Msa0650490 MtrunA17_Chr5g0417821 46.078 102 54 1 101 201 9 110 1.74e-24 102
Msa0650490 MtrunA17_Chr3g0099131 44.762 105 57 1 101 204 43 147 2.01e-24 105
Msa0650490 MtrunA17_Chr4g0030881 42.975 121 60 3 97 209 5 124 2.18e-24 101
Msa0650490 MtrunA17_Chr6g0470971 44.118 102 56 1 101 201 16 117 2.40e-24 102
Msa0650490 MtrunA17_Chr7g0274581 44.762 105 57 1 101 204 14 118 2.90e-24 99.8
Msa0650490 MtrunA17_Chr4g0022931 47.573 103 51 2 101 201 15 116 3.23e-24 101
Msa0650490 MtrunA17_Chr2g0311221 48.980 98 49 1 99 195 14 111 3.24e-24 102
Msa0650490 MtrunA17_Chr3g0115821 48.077 104 51 2 101 202 14 116 3.60e-24 102
Msa0650490 MtrunA17_Chr8g0360111 46.000 100 53 1 101 199 27 126 5.70e-24 100
Msa0650490 MtrunA17_Chr5g0434911 43.137 102 57 1 101 201 23 124 7.11e-24 100
Msa0650490 MtrunA17_Chr8g0342521 44.348 115 56 3 94 201 2 115 7.62e-24 101
Msa0650490 MtrunA17_Chr1g0203441 44.118 102 56 1 101 201 15 116 8.70e-24 100
Msa0650490 MtrunA17_Chr7g0220341 38.655 119 70 1 86 201 12 130 1.05e-23 100
Msa0650490 MtrunA17_Chr1g0193371 43.396 106 57 2 101 204 14 118 1.11e-23 101
Msa0650490 MtrunA17_Chr7g0270891 42.453 106 60 1 101 205 14 119 1.18e-23 101
Msa0650490 MtrunA17_Chr4g0048511 48.039 102 52 1 101 201 15 116 1.35e-23 101
Msa0650490 MtrunA17_Chr2g0330041 45.217 115 55 3 94 201 2 115 1.40e-23 101
Msa0650490 MtrunA17_Chr1g0211161 43.925 107 57 2 101 205 15 120 1.44e-23 98.6
Msa0650490 MtrunA17_Chr4g0070611 41.026 117 63 2 94 204 2 118 1.59e-23 100
Msa0650490 MtrunA17_Chr5g0434831 43.137 102 57 1 101 201 9 110 2.06e-23 97.1
Msa0650490 MtrunA17_Chr5g0434841 43.137 102 57 1 101 201 22 123 2.10e-23 100
Msa0650490 MtrunA17_Chr8g0342481 45.217 115 56 2 94 201 2 116 2.46e-23 101
Msa0650490 MtrunA17_Chr4g0070641 41.026 117 63 2 94 204 2 118 2.98e-23 95.9
Msa0650490 MtrunA17_Chr3g0117091 43.925 107 57 2 101 205 14 119 3.15e-23 100
Msa0650490 MtrunA17_Chr8g0387421 43.396 106 59 1 101 205 14 119 3.44e-23 99.4
Msa0650490 MtrunA17_Chr5g0397231 45.794 107 52 2 94 194 2 108 3.47e-23 99.8
Msa0650490 MtrunA17_Chr7g0228991 42.157 102 58 1 101 201 31 132 3.88e-23 98.2
Msa0650490 MtrunA17_Chr5g0395281 36.310 168 96 5 101 259 14 179 4.03e-23 99.0
Msa0650490 MtrunA17_Chr8g0354661 41.129 124 70 2 98 219 36 158 4.44e-23 101
Msa0650490 MtrunA17_Chr2g0328771 43.636 110 59 2 101 208 22 130 4.81e-23 99.0
Msa0650490 MtrunA17_Chr1g0209661 36.765 136 77 2 101 227 29 164 4.90e-23 99.0
Msa0650490 MtrunA17_Chr1g0193801 41.509 106 61 1 101 205 14 119 5.79e-23 99.8
Msa0650490 MtrunA17_Chr4g0058631 41.509 106 61 1 101 205 14 119 6.03e-23 99.4
Msa0650490 MtrunA17_Chr5g0400821 34.416 154 89 4 101 248 14 161 6.70e-23 98.6
Msa0650490 MtrunA17_Chr2g0327821 42.991 107 58 2 101 205 8 113 7.04e-23 96.7
Msa0650490 MtrunA17_Chr7g0228891 44.340 106 56 2 100 203 13 117 7.39e-23 97.4
Msa0650490 MtrunA17_Chr5g0410961 42.105 114 60 2 94 201 2 115 7.49e-23 99.0
Msa0650490 MtrunA17_Chr8g0343831 40.566 106 62 1 101 205 10 115 7.70e-23 97.1
Msa0650490 MtrunA17_Chr2g0281071 45.631 103 55 1 100 201 14 116 7.71e-23 99.0
Msa0650490 MtrunA17_Chr2g0323411 47.059 102 53 1 101 201 14 115 9.13e-23 98.2
Msa0650490 MtrunA17_Chr4g0022891 38.655 119 65 3 101 212 14 131 1.04e-22 96.3
Msa0650490 MtrunA17_Chr7g0228481 38.406 138 80 2 59 196 182 314 1.16e-22 99.4
Msa0650490 MtrunA17_Chr5g0435101 45.192 104 54 2 101 202 13 115 1.27e-22 95.5
Msa0650490 MtrunA17_Chr5g0434931 41.176 102 59 1 101 201 37 138 1.38e-22 97.1
Msa0650490 MtrunA17_Chr4g0032401 42.056 107 61 1 101 206 19 125 2.00e-22 97.4
Msa0650490 MtrunA17_Chr1g0167691 36.765 136 79 3 101 230 14 148 2.69e-22 95.5
Msa0650490 MtrunA17_Chr3g0080861 41.463 123 67 3 83 203 23 142 3.02e-22 99.0
Msa0650490 MtrunA17_Chr1g0154031 45.045 111 58 2 101 209 78 187 3.36e-22 98.2
Msa0650490 MtrunA17_Chr3g0088461 39.669 121 72 1 84 203 7 127 3.49e-22 97.1
Msa0650490 MtrunA17_Chr7g0271241 46.392 97 49 2 101 195 14 109 3.50e-22 97.4
Msa0650490 MtrunA17_Chr1g0152011 31.250 176 98 4 101 253 14 189 4.12e-22 96.7
Msa0650490 MtrunA17_Chr4g0039971 44.340 106 56 2 101 204 15 119 6.05e-22 96.3
Msa0650490 MtrunA17_Chr1g0180391 40.171 117 67 2 95 209 15 130 8.06e-22 93.6
Msa0650490 MtrunA17_Chr6g0452271 44.118 102 56 1 101 201 14 115 8.58e-22 95.9
Msa0650490 MtrunA17_Chr4g0037141 40.517 116 61 3 94 202 2 116 1.12e-21 94.4
Msa0650490 MtrunA17_Chr1g0192411 43.299 97 54 1 101 196 14 110 1.13e-21 96.3
Msa0650490 MtrunA17_Chr7g0228401 48.810 84 43 0 112 195 290 373 1.42e-21 97.1
Msa0650490 MtrunA17_Chr3g0131121 40.000 120 68 3 101 217 14 132 1.55e-21 94.4
Msa0650490 MtrunA17_Chr3g0121241 39.623 106 63 1 101 205 44 149 4.87e-21 92.8
Msa0650490 MtrunA17_Chr1g0186061 40.909 110 62 2 101 208 22 130 5.11e-21 92.0
Msa0650490 MtrunA17_Chr1g0177901 29.146 199 114 3 112 294 5 192 5.46e-21 90.9
Msa0650490 MtrunA17_Chr4g0022881 40.196 102 58 2 101 200 14 114 5.95e-21 91.3
Msa0650490 MtrunA17_Chr8g0334881 48.958 96 47 2 101 194 12 107 7.06e-21 92.8
Msa0650490 MtrunA17_Chr2g0322521 41.481 135 72 3 71 203 5 134 8.43e-21 93.6
Msa0650490 MtrunA17_Chr4g0028311 44.660 103 55 2 101 201 14 116 8.65e-21 92.8
Msa0650490 MtrunA17_Chr1g0194301 36.667 120 73 2 87 204 21 139 1.07e-20 91.7
Msa0650490 MtrunA17_Chr7g0261281 43.689 103 55 2 101 201 14 115 1.16e-20 91.3
Msa0650490 MtrunA17_Chr4g0054391 39.062 128 70 3 101 220 14 141 1.17e-20 91.7
Msa0650490 MtrunA17_Chr1g0168661 43.689 103 55 2 101 201 23 124 1.33e-20 90.9
Msa0650490 MtrunA17_Chr7g0217221 40.000 105 62 1 101 204 14 118 1.34e-20 91.3
Msa0650490 MtrunA17_Chr1g0167661 42.718 103 56 2 101 201 14 115 1.59e-20 90.5
Msa0650490 MtrunA17_Chr8g0346561 38.596 114 64 2 94 201 2 115 2.01e-20 91.3
Msa0650490 MtrunA17_Chr8g0385321 39.474 114 63 2 94 201 2 115 2.02e-20 91.3
Msa0650490 MtrunA17_Chr1g0194291 31.977 172 98 5 87 255 13 168 2.08e-20 90.5
Msa0650490 MtrunA17_Chr3g0135311 35.664 143 81 4 101 232 14 156 2.48e-20 91.7
Msa0650490 MtrunA17_Chr7g0275911 38.679 106 64 1 101 205 14 119 3.27e-20 89.7
Msa0650490 MtrunA17_Chr1g0194951 41.739 115 59 3 94 201 2 115 3.28e-20 91.7
Msa0650490 MtrunA17_Chr1g0151941 42.718 103 57 2 101 201 14 116 3.32e-20 89.7
Msa0650490 MtrunA17_Chr7g0264641 42.718 103 57 2 101 201 14 116 3.46e-20 90.1
Msa0650490 MtrunA17_Chr7g0240821 43.000 100 54 2 104 201 6 104 3.84e-20 89.0
Msa0650490 MtrunA17_Chr4g0060721 41.818 110 62 2 101 208 15 124 3.91e-20 90.9
Msa0650490 MtrunA17_Chr2g0327351 44.898 98 52 2 101 196 14 111 5.22e-20 90.5
Msa0650490 MtrunA17_Chr4g0013361 43.590 117 61 3 89 203 3 116 1.18e-19 89.0
Msa0650490 MtrunA17_Chr4g0044421 36.134 119 75 1 101 218 14 132 1.27e-19 86.3
Msa0650490 MtrunA17_Chr5g0441131 39.252 107 62 3 100 204 10 115 1.79e-19 85.9
Msa0650490 MtrunA17_Chr4g0042671 39.130 115 64 2 94 202 2 116 2.20e-19 89.7
Msa0650490 MtrunA17_Chr7g0228231 35.897 117 74 1 89 204 4 120 2.26e-19 86.3
Msa0650490 MtrunA17_Chr6g0453471 40.777 103 60 1 101 202 14 116 2.60e-19 89.0
Msa0650490 MtrunA17_Chr3g0092401 40.000 105 62 1 101 204 15 119 2.64e-19 88.2
Msa0650490 MtrunA17_Chr7g0217741 42.718 103 56 2 101 201 14 115 3.08e-19 87.8
Msa0650490 MtrunA17_Chr6g0453211 42.268 97 55 1 101 196 14 110 3.25e-19 87.8
Msa0650490 MtrunA17_Chr7g0233061 35.606 132 79 4 79 207 159 287 4.45e-19 88.2
Msa0650490 MtrunA17_Chr5g0416341 34.286 105 69 0 104 208 29 133 5.80e-19 89.0
Msa0650490 MtrunA17_Chr3g0110351 41.509 106 59 2 101 204 14 118 5.83e-19 87.0
Msa0650490 MtrunA17_Chr5g0440781 42.056 107 55 4 100 203 13 115 6.01e-19 84.3
Msa0650490 MtrunA17_Chr4g0057031 41.346 104 58 2 101 202 14 116 6.79e-19 86.3
Msa0650490 MtrunA17_Chr6g0450101 35.088 171 102 4 101 269 16 179 6.96e-19 84.7
Msa0650490 MtrunA17_Chr5g0440761 40.952 105 57 3 101 203 14 115 7.69e-19 85.9
Msa0650490 MtrunA17_Chr8g0349261 44.231 104 54 3 101 201 15 117 8.80e-19 86.3
Msa0650490 MtrunA17_Chr5g0441141 40.952 105 57 3 101 203 14 115 9.78e-19 85.9
Msa0650490 MtrunA17_Chr5g0434571 41.509 106 59 2 101 204 50 154 1.24e-18 86.7
Msa0650490 MtrunA17_Chr7g0254411 39.450 109 65 1 101 208 14 122 1.48e-18 86.3
Msa0650490 MtrunA17_Chr7g0247131 49.367 79 38 1 127 203 5 83 2.11e-18 84.7
Msa0650490 MtrunA17_Chr5g0434901 50.000 62 31 0 134 195 9 70 7.46e-18 79.3
Msa0650490 MtrunA17_Chr4g0068921 39.316 117 66 2 81 196 10 122 1.49e-17 80.5
Msa0650490 MtrunA17_Chr4g0068061 38.235 102 62 1 101 201 14 115 1.56e-17 83.2
Msa0650490 MtrunA17_Chr4g0072751 40.816 98 56 2 101 196 14 111 1.61e-17 83.6
Msa0650490 MtrunA17_Chr8g0362231 29.333 150 99 2 104 251 25 169 2.21e-17 84.0
Msa0650490 MtrunA17_Chr7g0238651 30.178 169 105 4 101 264 7 167 7.21e-17 81.6
Msa0650490 MtrunA17_Chr2g0293911 36.090 133 78 2 73 204 4 130 1.22e-16 80.5
Msa0650490 MtrunA17_Chr3g0099141 43.902 82 45 1 101 181 42 123 3.36e-16 75.1
Msa0650490 MtrunA17_Chr6g0487491 39.286 112 58 3 101 202 14 125 7.70e-16 77.0
Msa0650490 MtrunA17_Chr7g0229101 51.613 62 30 0 134 195 8 69 8.96e-16 75.9
Msa0650490 MtrunA17_Chr7g0229131 44.776 67 37 0 134 200 8 74 1.17e-14 71.6
Msa0650490 MtrunA17_Chr8g0342511 42.529 87 42 3 94 173 2 87 1.46e-14 69.3
Msa0650490 MtrunA17_Chr5g0395221 45.333 75 40 1 101 174 14 88 2.50e-14 68.2
Msa0650490 MtrunA17_Chr7g0269831 41.748 103 57 2 101 201 14 115 3.73e-14 73.6
Msa0650490 MtrunA17_Chr3g0093811 43.056 72 39 2 134 204 18 88 7.34e-14 71.6
Msa0650490 MtrunA17_Chr5g0425591 40.741 81 46 2 101 179 11 91 2.26e-13 65.9
Msa0650490 MtrunA17_Chr6g0483051 36.264 91 57 1 104 194 72 161 2.49e-13 72.0
Msa0650490 MtrunA17_Chr2g0323321 41.250 80 44 2 101 178 13 91 2.54e-13 66.2
Msa0650490 MtrunA17_Chr8g0342531 44.156 77 40 2 101 175 14 89 2.94e-13 67.4
Msa0650490 MtrunA17_Chr4g0042611 41.333 75 43 1 101 174 14 88 4.44e-13 64.7
Msa0650490 MtrunA17_Chr8g0342461 44.156 77 41 1 101 175 14 90 1.33e-12 65.1
Msa0650490 MtrunA17_Chr8g0342471 40.000 90 45 4 94 175 2 90 2.20e-12 64.3
Msa0650490 MtrunA17_Chr3g0104501 56.863 51 22 0 101 151 133 183 8.74e-12 63.9
Msa0650490 MtrunA17_Chr5g0421201 50.000 50 25 0 153 202 12 61 1.23e-11 63.2
Msa0650490 MtrunA17_Chr7g0233151 43.137 51 29 0 151 201 1 51 8.79e-11 60.5
Msa0650490 MtrunA17_Chr7g0274481 36.471 85 53 1 102 186 8 91 9.91e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650490 AT1G69560.1 77.397 146 25 2 76 213 74 219 5.09e-77 243
Msa0650490 AT1G69560.2 77.397 146 25 2 76 213 90 235 6.94e-77 243
Msa0650490 AT1G26780.1 88.034 117 14 0 98 214 95 211 3.94e-74 233
Msa0650490 AT1G26780.2 88.034 117 14 0 98 214 95 211 2.25e-73 234
Msa0650490 AT3G29020.1 75.214 117 29 0 96 212 60 176 3.34e-64 206
Msa0650490 AT3G29020.2 75.214 117 29 0 96 212 62 178 1.61e-63 207
Msa0650490 AT5G17800.1 79.817 109 22 0 96 204 88 196 8.79e-62 203
Msa0650490 AT1G17950.1 75.455 110 27 0 98 207 2 111 2.16e-59 194
Msa0650490 AT1G73410.1 77.982 109 24 0 98 206 3 111 3.18e-56 186
Msa0650490 AT1G73410.2 77.273 110 25 0 98 207 3 112 9.29e-56 183
Msa0650490 AT4G33450.1 61.832 131 50 0 99 229 17 147 1.35e-54 182
Msa0650490 AT5G39700.1 64.486 107 38 0 102 208 57 163 1.14e-46 159
Msa0650490 AT2G39880.1 45.783 166 70 3 94 241 45 208 6.25e-38 141
Msa0650490 AT5G67300.1 48.276 145 70 2 101 244 6 146 9.07e-38 139
Msa0650490 AT3G55730.1 56.190 105 46 0 100 204 55 159 6.81e-37 139
Msa0650490 AT4G37260.1 57.426 101 43 0 101 201 13 113 1.59e-36 136
Msa0650490 AT2G23290.1 55.446 101 45 0 101 201 13 113 4.64e-35 132
Msa0650490 AT3G50060.1 54.902 102 46 0 100 201 5 106 4.93e-34 129
Msa0650490 AT3G09230.1 52.427 103 49 0 100 202 54 156 1.04e-33 130
Msa0650490 AT3G09370.1 55.446 101 45 0 101 201 130 230 8.77e-33 129
Msa0650490 AT3G09370.2 55.446 101 45 0 101 201 135 235 9.24e-33 129
Msa0650490 AT3G09370.3 55.446 101 45 0 101 201 143 243 1.65e-32 129
Msa0650490 AT5G02320.1 53.922 102 47 0 100 201 126 227 9.56e-32 127
Msa0650490 AT5G02320.2 53.922 102 47 0 100 201 126 227 9.56e-32 127
Msa0650490 AT5G02320.3 53.922 102 47 0 100 201 66 167 1.14e-31 126
Msa0650490 AT5G58850.1 48.333 120 59 1 96 215 100 216 2.65e-30 121
Msa0650490 AT5G11050.1 47.899 119 59 1 97 215 101 216 2.33e-29 119
Msa0650490 AT5G11510.3 48.039 102 53 0 100 201 80 181 2.34e-29 121
Msa0650490 AT5G11510.1 48.039 102 53 0 100 201 80 181 2.34e-29 121
Msa0650490 AT5G11510.4 48.039 102 53 0 100 201 80 181 2.34e-29 121
Msa0650490 AT5G11510.2 48.039 102 53 0 100 201 80 181 2.83e-29 121
Msa0650490 AT5G11510.5 48.039 102 53 0 100 201 80 181 3.25e-29 120
Msa0650490 AT4G32730.5 47.573 103 54 0 100 202 86 188 6.95e-29 120
Msa0650490 AT4G32730.4 47.573 103 54 0 100 202 86 188 6.95e-29 120
Msa0650490 AT4G32730.3 47.573 103 54 0 100 202 86 188 6.95e-29 120
Msa0650490 AT4G32730.2 47.573 103 54 0 100 202 86 188 6.95e-29 120
Msa0650490 AT4G32730.1 47.573 103 54 0 100 202 86 188 7.11e-29 120
Msa0650490 AT2G25230.1 48.515 101 50 2 101 200 26 125 1.42e-28 112
Msa0650490 AT3G27785.1 44.444 108 60 0 101 208 189 296 1.78e-27 114
Msa0650490 AT5G40360.1 36.601 153 90 3 93 238 148 300 2.95e-27 112
Msa0650490 AT5G40330.1 46.078 102 54 1 101 201 14 115 9.38e-27 107
Msa0650490 AT3G12720.1 48.598 107 52 2 101 205 24 129 1.42e-26 108
Msa0650490 AT4G18770.1 42.400 125 70 1 100 222 216 340 7.48e-26 108
Msa0650490 AT3G28470.1 50.526 95 46 1 101 194 14 108 1.43e-25 106
Msa0650490 AT4G28110.1 44.348 115 58 2 94 202 2 116 1.44e-25 105
Msa0650490 AT5G14750.1 43.689 103 57 1 100 201 17 119 1.89e-25 103
Msa0650490 AT1G63910.1 42.857 126 66 2 94 213 2 127 3.84e-25 106
Msa0650490 AT4G25560.1 44.444 108 59 1 101 207 12 119 3.90e-25 104
Msa0650490 AT3G11440.2 38.571 140 84 2 65 203 8 146 8.64e-25 106
Msa0650490 AT5G54230.1 46.154 104 55 1 99 201 12 115 1.00e-24 103
Msa0650490 AT1G79180.1 46.296 108 55 2 101 206 16 122 1.12e-24 103
Msa0650490 AT3G11440.3 38.571 140 84 2 65 203 8 146 1.34e-24 106
Msa0650490 AT3G11440.4 38.571 140 84 2 65 203 8 146 1.34e-24 106
Msa0650490 AT3G11440.1 38.571 140 84 2 65 203 8 146 1.34e-24 106
Msa0650490 AT3G27920.1 43.137 102 57 1 101 201 16 117 1.73e-24 101
Msa0650490 AT5G65230.1 48.544 103 50 2 101 201 14 115 2.16e-24 103
Msa0650490 AT4G05100.1 47.059 102 53 1 101 201 15 116 3.34e-24 102
Msa0650490 AT3G30210.1 39.062 128 72 3 99 224 27 150 4.32e-24 101
Msa0650490 AT3G53200.1 42.735 117 64 2 91 205 1 116 5.91e-24 100
Msa0650490 AT5G60890.1 43.396 106 59 1 101 205 14 119 6.55e-24 101
Msa0650490 AT2G26950.1 42.857 112 52 3 97 203 14 118 8.94e-24 102
Msa0650490 AT1G09540.1 38.129 139 76 3 101 237 14 144 1.04e-23 102
Msa0650490 AT4G26930.1 43.750 112 62 1 94 204 14 125 1.20e-23 102
Msa0650490 AT2G26960.1 42.373 118 67 1 87 203 8 125 1.31e-23 102
Msa0650490 AT3G23250.1 42.857 105 59 1 101 204 14 118 1.93e-23 99.8
Msa0650490 AT5G56110.1 45.631 103 55 1 101 202 14 116 2.64e-23 100
Msa0650490 AT5G52600.1 44.231 104 57 1 99 201 12 115 2.81e-23 97.4
Msa0650490 AT5G12870.1 41.739 115 66 1 93 206 12 126 3.52e-23 99.0
Msa0650490 AT4G01680.3 43.269 104 58 1 101 203 14 117 3.77e-23 97.8
Msa0650490 AT4G01680.1 43.269 104 58 1 101 203 14 117 3.89e-23 100
Msa0650490 AT3G48920.1 45.833 96 51 1 101 195 20 115 5.26e-23 98.2
Msa0650490 AT5G10280.1 45.283 106 55 2 99 202 12 116 5.91e-23 99.4
Msa0650490 AT4G17785.1 43.697 119 64 2 88 204 2 119 5.98e-23 99.8
Msa0650490 AT4G17785.2 43.697 119 64 2 88 204 2 119 6.05e-23 99.8
Msa0650490 AT1G18570.1 42.453 106 60 1 101 205 15 120 6.67e-23 99.8
Msa0650490 AT3G13890.2 42.982 114 59 2 94 201 2 115 6.74e-23 99.8
Msa0650490 AT1G56160.1 45.631 103 53 2 101 201 16 117 7.26e-23 98.6
Msa0650490 AT5G40430.1 41.176 102 59 1 99 200 52 152 7.98e-23 97.4
Msa0650490 AT1G57560.1 42.991 107 58 2 101 205 14 119 8.08e-23 98.6
Msa0650490 AT5G14340.1 44.762 105 55 2 101 203 26 129 8.11e-23 97.8
Msa0650490 AT1G57560.2 42.991 107 58 2 101 205 14 119 8.52e-23 97.8
Msa0650490 AT3G46130.1 43.925 107 57 2 101 205 11 116 9.25e-23 97.4
Msa0650490 AT5G59780.3 42.593 108 59 2 101 206 10 116 1.03e-22 96.7
Msa0650490 AT5G26660.1 43.925 107 57 2 101 205 14 119 1.09e-22 99.0
Msa0650490 AT5G06100.1 43.243 111 60 2 94 203 29 137 1.49e-22 99.8
Msa0650490 AT4G00540.2 44.860 107 56 1 101 204 103 209 1.74e-22 99.0
Msa0650490 AT5G61420.2 44.340 106 58 1 101 205 14 119 1.75e-22 98.6
Msa0650490 AT1G35515.1 39.474 114 63 2 94 201 2 115 2.03e-22 95.1
Msa0650490 AT5G06100.5 43.243 111 60 2 94 203 29 137 2.58e-22 99.8
Msa0650490 AT5G06100.2 43.243 111 60 2 94 203 29 137 2.58e-22 99.8
Msa0650490 AT5G06100.3 43.243 111 60 2 94 203 29 137 2.58e-22 99.8
Msa0650490 AT5G06100.4 43.243 111 60 2 94 203 29 137 2.58e-22 99.8
Msa0650490 AT1G22640.1 35.976 164 88 6 94 246 2 159 3.30e-22 95.9
Msa0650490 AT4G00540.1 44.860 107 56 1 101 204 101 207 3.40e-22 98.6
Msa0650490 AT1G74080.1 45.545 101 54 1 101 200 14 114 3.60e-22 97.1
Msa0650490 AT3G12820.1 45.631 103 53 2 101 201 16 117 3.74e-22 95.1
Msa0650490 AT2G31180.1 45.631 103 53 2 101 201 14 115 3.91e-22 95.5
Msa0650490 AT2G32460.1 40.833 120 68 2 101 218 20 138 4.02e-22 99.0
Msa0650490 AT3G13890.1 40.650 123 58 3 94 201 2 124 4.81e-22 97.4
Msa0650490 AT2G32460.2 40.833 120 68 2 101 218 8 126 5.58e-22 98.2
Msa0650490 AT4G21440.1 46.078 102 54 1 101 201 14 115 7.17e-22 96.7
Msa0650490 AT2G47190.1 32.903 155 90 3 73 226 2 143 7.19e-22 95.1
Msa0650490 AT1G16490.1 45.631 103 53 2 101 201 16 117 8.40e-22 95.1
Msa0650490 AT4G09460.1 33.784 148 83 4 94 234 2 141 9.26e-22 94.0
Msa0650490 AT4G38620.1 40.517 116 61 3 94 202 2 116 9.47e-22 95.1
Msa0650490 AT4G01680.2 40.517 116 56 2 101 203 14 129 9.51e-22 96.3
Msa0650490 AT1G34670.1 42.105 114 60 2 94 201 2 115 1.11e-21 96.3
Msa0650490 AT2G02820.1 37.615 109 68 0 104 212 33 141 1.46e-21 97.1
Msa0650490 AT5G52260.1 46.154 104 53 2 101 202 14 116 1.65e-21 94.0
Msa0650490 AT1G06180.1 43.269 104 56 2 101 202 14 116 1.78e-21 93.6
Msa0650490 AT2G02820.2 37.615 109 68 0 104 212 33 141 1.81e-21 97.1
Msa0650490 AT5G55020.1 41.667 108 62 1 98 204 25 132 1.93e-21 97.1
Msa0650490 AT1G79180.2 37.143 140 54 2 101 206 16 155 2.35e-21 94.7
Msa0650490 AT5G07700.1 46.078 102 54 1 101 201 14 115 2.55e-21 94.7
Msa0650490 AT5G07700.2 46.078 102 54 1 101 201 14 115 2.55e-21 94.7
Msa0650490 AT2G02820.3 37.615 109 68 0 104 212 33 141 2.76e-21 94.7
Msa0650490 AT3G02940.2 41.228 114 61 2 94 201 2 115 4.40e-21 93.6
Msa0650490 AT5G35550.1 30.000 210 124 8 101 290 16 222 4.67e-21 92.4
Msa0650490 AT3G02940.1 41.228 114 61 2 94 201 2 115 5.57e-21 93.6
Msa0650490 AT3G02940.3 41.228 114 61 2 94 201 2 115 5.57e-21 93.6
Msa0650490 AT3G08500.1 42.308 104 59 1 101 203 32 135 8.84e-21 93.2
Msa0650490 AT5G16770.4 40.952 105 61 1 101 204 14 118 9.25e-21 92.8
Msa0650490 AT5G16770.3 40.952 105 61 1 101 204 14 118 9.25e-21 92.8
Msa0650490 AT3G13540.1 38.679 106 64 1 101 205 25 130 1.03e-20 91.3
Msa0650490 AT5G16770.1 39.316 117 65 2 94 204 2 118 1.06e-20 92.8
Msa0650490 AT5G16770.2 39.316 117 65 2 94 204 2 118 1.06e-20 92.8
Msa0650490 AT5G07690.1 44.554 101 55 1 101 200 14 114 1.11e-20 92.8
Msa0650490 AT5G15310.1 42.157 102 58 1 101 201 14 115 1.15e-20 92.8
Msa0650490 AT1G74430.1 39.623 106 63 1 101 205 14 119 1.19e-20 91.7
Msa0650490 AT4G12350.1 42.453 106 58 2 98 201 11 115 1.20e-20 92.0
Msa0650490 AT3G01140.2 42.157 102 58 1 101 201 14 115 1.22e-20 92.8
Msa0650490 AT5G65790.1 38.017 121 72 3 101 218 14 134 1.31e-20 93.2
Msa0650490 AT5G57620.1 41.905 105 59 2 99 201 12 116 1.33e-20 92.8
Msa0650490 AT5G15310.2 42.157 102 58 1 101 201 14 115 1.39e-20 92.4
Msa0650490 AT1G14350.2 37.864 103 64 0 104 206 28 130 1.47e-20 94.0
Msa0650490 AT1G14350.1 37.864 103 64 0 104 206 28 130 1.47e-20 94.0
Msa0650490 AT3G24310.1 42.857 105 57 2 101 203 20 123 1.51e-20 91.3
Msa0650490 AT1G08810.1 31.000 200 120 3 101 282 14 213 1.59e-20 91.3
Msa0650490 AT3G61250.1 44.231 104 55 2 101 202 14 116 1.80e-20 91.7
Msa0650490 AT3G01140.1 42.157 102 58 1 101 201 57 158 1.96e-20 92.8
Msa0650490 AT3G60460.1 46.667 105 54 2 101 203 13 117 2.00e-20 91.7
Msa0650490 AT1G66380.1 39.024 123 73 2 94 215 3 124 2.11e-20 87.4
Msa0650490 AT4G13480.1 42.857 105 57 2 101 203 8 111 2.78e-20 90.5
Msa0650490 AT5G62470.1 39.423 104 63 0 101 204 14 117 2.80e-20 92.0
Msa0650490 AT5G15310.4 42.157 102 58 1 101 201 14 115 2.97e-20 90.1
Msa0650490 AT1G18710.1 40.196 102 60 1 101 201 14 115 3.12e-20 90.5
Msa0650490 AT2G16720.1 32.258 155 96 4 94 240 2 155 3.52e-20 90.1
Msa0650490 AT5G23000.1 43.269 104 55 2 101 201 14 116 3.92e-20 91.3
Msa0650490 AT4G34990.1 39.474 114 63 2 94 201 2 115 4.02e-20 90.1
Msa0650490 AT1G68320.1 29.545 220 131 5 101 310 21 226 4.03e-20 90.5
Msa0650490 AT5G14750.3 48.529 68 35 0 134 201 18 85 5.08e-20 87.4
Msa0650490 AT1G66230.1 42.991 107 58 2 100 204 13 118 5.51e-20 90.1
Msa0650490 AT5G16600.1 42.453 106 58 2 101 204 14 118 5.60e-20 90.9
Msa0650490 AT3G49690.1 42.718 103 57 2 101 201 14 116 7.55e-20 90.1
Msa0650490 AT1G25340.2 38.462 104 60 1 101 204 20 119 1.06e-19 89.0
Msa0650490 AT1G25340.1 39.623 106 61 2 101 204 20 124 1.24e-19 89.0
Msa0650490 AT3G27810.1 42.056 107 60 2 101 206 22 127 1.26e-19 87.8
Msa0650490 AT4G22680.1 43.689 103 55 2 101 201 14 115 2.09e-19 87.8
Msa0650490 AT1G25340.3 38.462 104 60 1 101 204 20 119 2.15e-19 88.6
Msa0650490 AT1G48000.1 44.211 95 52 1 101 194 34 128 2.20e-19 87.4
Msa0650490 AT3G47600.1 37.615 109 67 1 101 208 14 122 2.83e-19 89.0
Msa0650490 AT1G66370.1 35.135 111 71 1 101 210 10 120 3.33e-19 87.0
Msa0650490 AT5G40350.1 40.594 101 59 1 101 200 19 119 5.02e-19 85.5
Msa0650490 AT3G53200.2 52.778 72 34 0 134 205 12 83 6.15e-19 85.1
Msa0650490 AT5G49330.1 40.196 102 60 1 101 201 14 115 8.64e-19 87.4
Msa0650490 AT5G62470.2 39.048 105 63 1 101 204 14 118 9.61e-19 87.4
Msa0650490 AT3G01530.1 40.952 105 59 2 101 203 27 130 1.43e-18 84.3
Msa0650490 AT2G47460.1 34.014 147 80 3 101 246 14 144 1.86e-18 87.0
Msa0650490 AT1G74650.1 40.777 103 60 1 101 202 14 116 2.51e-18 85.9
Msa0650490 AT4G37780.1 34.426 122 78 2 101 220 14 135 2.77e-18 85.5
Msa0650490 AT3G28910.1 40.196 102 60 1 101 201 14 115 4.32e-18 85.1
Msa0650490 AT3G12820.2 51.471 68 33 0 134 201 2 69 4.76e-18 82.4
Msa0650490 AT5G26660.2 48.611 72 37 0 134 205 17 88 5.60e-18 84.7
Msa0650490 AT1G56650.1 38.017 121 74 1 94 213 3 123 6.29e-18 83.2
Msa0650490 AT5G49620.1 37.121 132 75 3 75 204 7 132 1.73e-17 83.2
Msa0650490 AT5G59780.2 47.222 72 38 0 134 205 23 94 1.97e-17 81.3
Msa0650490 AT5G35550.2 31.250 176 99 7 134 290 53 225 2.23e-17 82.0
Msa0650490 AT3G46130.3 47.222 72 38 0 134 205 13 84 2.63e-17 81.3
Msa0650490 AT3G18100.1 38.144 97 60 0 101 197 546 642 3.28e-17 84.7
Msa0650490 AT3G18100.1 32.632 95 62 2 101 194 495 588 6.46e-11 65.1
Msa0650490 AT1G66390.1 40.000 110 65 1 94 202 3 112 3.87e-17 81.3
Msa0650490 AT3G46130.4 47.222 72 38 0 134 205 23 94 3.90e-17 80.9
Msa0650490 AT3G18100.3 38.144 97 60 0 101 197 498 594 3.98e-17 84.3
Msa0650490 AT3G18100.3 32.632 95 62 2 101 194 447 540 7.86e-11 64.7
Msa0650490 AT3G18100.4 38.144 97 60 0 101 197 385 481 4.37e-17 84.0
Msa0650490 AT3G18100.4 32.632 95 62 2 101 194 334 427 9.05e-11 64.3
Msa0650490 AT3G18100.2 38.144 97 60 0 101 197 333 429 5.59e-17 83.6
Msa0650490 AT3G27810.2 47.945 73 37 1 134 206 7 78 9.40e-17 78.2
Msa0650490 AT3G06490.1 39.623 106 61 2 101 204 21 125 9.77e-17 81.3
Msa0650490 AT2G36890.1 40.777 103 59 2 101 201 14 116 1.16e-16 80.5
Msa0650490 AT3G62610.1 37.864 103 63 1 101 202 14 116 1.39e-16 80.9
Msa0650490 AT2G36890.2 40.777 103 59 2 101 201 55 157 1.62e-16 80.9
Msa0650490 AT5G40350.2 46.269 67 36 0 134 200 8 74 3.42e-16 76.3
Msa0650490 AT5G62320.1 37.143 140 75 5 101 230 15 151 7.55e-16 77.4
Msa0650490 AT2G37630.1 32.117 137 87 3 101 233 4 138 2.47e-15 77.4
Msa0650490 AT1G66380.3 43.902 82 45 1 134 215 11 91 6.95e-15 70.9
Msa0650490 AT3G47600.2 41.333 75 44 0 134 208 42 116 8.44e-15 75.5
Msa0650490 AT5G49620.2 33.562 146 75 4 75 204 7 146 3.18e-14 73.6
Msa0650490 AT1G71030.2 42.424 66 38 0 137 202 5 70 8.83e-14 69.7
Msa0650490 AT1G71030.1 42.424 66 38 0 137 202 19 84 9.48e-14 70.1
Msa0650490 AT1G22640.3 35.514 107 60 3 144 246 1 102 8.21e-13 67.4
Msa0650490 AT5G14750.4 41.379 58 34 0 144 201 1 58 9.18e-13 65.9
Msa0650490 AT5G14750.2 41.379 58 34 0 144 201 1 58 9.18e-13 65.9
Msa0650490 AT3G23250.2 42.623 61 35 0 144 204 1 61 5.56e-12 65.5

Find 114 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAACTTGTTGCTCTTTA+TGG 0.054838 4_3:+57531500 Msa0650490:CDS
ATGCAAGCTCATAGAATTTA+TGG 0.132347 4_3:+57531750 Msa0650490:CDS
CTGACATAACTATTCTCATT+AGG 0.246214 4_3:-57531401 None:intergenic
CCTTTCTTTCTCACATCATA+TGG 0.272531 4_3:+57533167 Msa0650490:three_prime_UTR
GAAGGTAATGGTTCTGATTC+TGG 0.292582 4_3:+57531344 Msa0650490:CDS
TTTGGAAGGTTAATATAATA+AGG 0.302911 4_3:-57531993 None:intergenic
ACTCCAAGGAAGTCAATAAA+TGG 0.307105 4_3:-57532944 None:intergenic
ATATAACATTCCCTCATAAA+TGG 0.307740 4_3:-57531278 None:intergenic
GGTGTTGAGTGTGGCTTAAA+TGG 0.311550 4_3:+57532080 Msa0650490:CDS
CTCTTTATGGTCCTCAGAAC+TGG 0.318567 4_3:+57531513 Msa0650490:CDS
GCCTATCCCAGCTTCTCATT+TGG 0.328018 4_3:-57532655 None:intergenic
ACAGCATTATCTGTTCTTCC+AGG 0.328837 4_3:-57531804 None:intergenic
GAATCACTGGCATGTTATAA+TGG 0.340701 4_3:+57531830 Msa0650490:CDS
TGACATAACTATTCTCATTA+GGG 0.347232 4_3:-57531400 None:intergenic
CCATTGAAGCTCCTCAATAT+AGG 0.361499 4_3:+57533027 Msa0650490:three_prime_UTR
ACACCATGGAAAGATGAATA+TGG 0.364372 4_3:-57532047 None:intergenic
ATTGGTCTTTACCATTTATG+AGG 0.365573 4_3:+57531267 Msa0650490:CDS
ATTCCATTTATTGACTTCCT+TGG 0.378387 4_3:+57532941 Msa0650490:CDS
AAGGAGATGAGAAGAGAGAT+AGG 0.383304 4_3:-57533148 None:intergenic
TCAAGATTGCTATATCTCTA+AGG 0.385665 4_3:+57531229 Msa0650490:CDS
GATTTGAAGGCAAGAGTTGT+AGG 0.394903 4_3:+57531655 Msa0650490:intron
AGGAGGGTACTACTACTAAT+TGG 0.402413 4_3:+57531249 Msa0650490:CDS
TATTAATCCTTGGATCCAAT+TGG 0.404638 4_3:-57531692 None:intergenic
AACTTTGTGCAAGAGGTCAT+TGG 0.408066 4_3:+57531453 Msa0650490:CDS
TCTTTCCATGGTGTAATTGA+TGG 0.409529 4_3:+57532056 Msa0650490:CDS
AGGGAAAAGCCTTGCAATCA+TGG 0.411007 4_3:-57531784 None:intergenic
ATCTTCTTCTTCAATGGGAA+TGG 0.414415 4_3:+57531151 None:intergenic
TATTATATTAACCTTCCAAA+TGG 0.415009 4_3:+57531996 Msa0650490:CDS
ATAGAATTTATGGTAACAAA+TGG 0.421274 4_3:+57531760 Msa0650490:CDS
CCTATATTGAGGAGCTTCAA+TGG 0.421931 4_3:-57533027 None:intergenic
TCCTTTCTGTTTACCTCGAA+TGG 0.424342 4_3:-57533073 None:intergenic
GCTAAGATGGTTCAACCAAT+TGG 0.427019 4_3:+57531677 Msa0650490:CDS
GTTGGTGTTGGTGTTGGTGT+TGG 0.428209 4_3:-57532701 None:intergenic
AAAGGATAGTTGCTCTACTT+TGG 0.430473 4_3:+57533090 Msa0650490:three_prime_UTR
CTTTCTTTCTCACATCATAT+GGG 0.430568 4_3:+57533168 Msa0650490:three_prime_UTR
TTATATTGAAAGAAACTTTG+AGG 0.433784 4_3:+57531295 Msa0650490:CDS
ACAACAACAGTACAGATATT+AGG 0.434655 4_3:+57532833 Msa0650490:CDS
TAATAAGGTGGTGGTGGTAC+TGG 0.437030 4_3:-57531978 None:intergenic
TTATAGCCAAGTGTTCCATT+TGG 0.440823 4_3:-57532011 None:intergenic
GAAAAGCTAGAAGGCAGATC+AGG 0.449953 4_3:+57531548 Msa0650490:CDS
AAAGCTCTTCTATTAATCCT+TGG 0.450183 4_3:-57531702 None:intergenic
AGAATACAAGCTTTGTCTCT+AGG 0.453853 4_3:+57531928 Msa0650490:CDS
TCATATATTGTGGATATTCA+TGG 0.454646 4_3:-57532739 None:intergenic
ATTATAGCCAAATGAGAAGC+TGG 0.455356 4_3:+57532648 Msa0650490:CDS
AAGCAAGCACCTACTCCTAT+TGG 0.457882 4_3:+57532125 Msa0650490:CDS
CTTGGTGTTGGTGTTGGTGT+TGG 0.458890 4_3:-57532707 None:intergenic
TCAATCTGTTTACAGAAGAA+TGG 0.458989 4_3:+57531902 Msa0650490:CDS
GAATACAAGCTTTGTCTCTA+GGG 0.466216 4_3:+57531929 Msa0650490:CDS
GCAAGAGTTGTAGGCTAAGA+TGG 0.469016 4_3:+57531664 Msa0650490:CDS
AGTGGTAAAGAGGTAGATAC+TGG 0.470872 4_3:+57531422 Msa0650490:CDS
CTCATAGCTGAAAAGCTAGA+AGG 0.475761 4_3:+57531539 Msa0650490:CDS
TGTTGTTGCTGCTGCTGTGG+TGG 0.476546 4_3:-57532813 None:intergenic
TCTGATTCTGGTGATGGTGT+TGG 0.477466 4_3:+57531356 Msa0650490:CDS
TTTCCATATTCATCTTTCCA+TGG 0.478710 4_3:+57532044 Msa0650490:CDS
CCATATGATGTGAGAAAGAA+AGG 0.479122 4_3:-57533167 None:intergenic
TAGTTATGTCAGTGGTAAAG+AGG 0.479949 4_3:+57531412 Msa0650490:CDS
AACCTTCCAAATGGAACACT+TGG 0.485686 4_3:+57532005 Msa0650490:CDS
TGTTGAGCAAACAAGCCAAT+AGG 0.487405 4_3:-57532140 None:intergenic
TTGAGCTTAGAATCTTCTGC+AGG 0.489768 4_3:-57531479 None:intergenic
TAGAATTTATGGTAACAAAT+GGG 0.516685 4_3:+57531761 Msa0650490:CDS
AGCCAAGTGTTCCATTTGGA+AGG 0.520674 4_3:-57532007 None:intergenic
ATAATGCTGTTAAGAATCAC+TGG 0.522535 4_3:+57531817 Msa0650490:CDS
TAACCACTTGGTGTTGGTGT+TGG 0.523247 4_3:-57532713 None:intergenic
ATTGATGGTGGTGTTGAGTG+TGG 0.524255 4_3:+57532071 Msa0650490:CDS
TGTTGTTGTTGCTGCTGCTG+TGG 0.525901 4_3:-57532816 None:intergenic
CAGCATTATCTGTTCTTCCA+GGG 0.526372 4_3:-57531803 None:intergenic
TTAATATAATAAGGTGGTGG+TGG 0.529285 4_3:-57531984 None:intergenic
ACCATTCGAGGTAAACAGAA+AGG 0.536133 4_3:+57533072 Msa0650490:three_prime_UTR
GGTTCAACCAATTGGATCCA+AGG 0.536491 4_3:+57531685 Msa0650490:CDS
TTTATTGACTTCCTTGGAGT+AGG 0.540554 4_3:+57532947 Msa0650490:CDS
CACTCTAAACTTTGTGCAAG+AGG 0.540656 4_3:+57531446 Msa0650490:CDS
TGATTATCATGTAAATCACT+TGG 0.543435 4_3:-57532677 None:intergenic
AACAGTGATGATGGTGGGGA+AGG 0.545028 4_3:+57531326 Msa0650490:CDS
TTGGTCTTTACCATTTATGA+GGG 0.550399 4_3:+57531268 Msa0650490:CDS
TGGAATTGCATCTGAAGGAG+GGG 0.551472 4_3:-57532924 None:intergenic
GATGATGGTGGGGAAGGTAA+TGG 0.554441 4_3:+57531332 Msa0650490:CDS
GAAAACAACAACAGTGATGA+TGG 0.563340 4_3:+57531317 Msa0650490:CDS
AATGGTTCTGATTCTGGTGA+TGG 0.564679 4_3:+57531350 Msa0650490:CDS
TATAGTCACAGCCACAGGAA+TGG 0.565292 4_3:+57531953 Msa0650490:CDS
AACAATCAAGTGCTTACAGA+AGG 0.566019 4_3:+57531868 Msa0650490:CDS
AGGGATATAGTCACAGCCAC+AGG 0.568908 4_3:+57531948 Msa0650490:CDS
ACAACAACAGTGATGATGGT+GGG 0.571679 4_3:+57531321 Msa0650490:CDS
ACAAATGGGCCATGATTGCA+AGG 0.575363 4_3:+57531775 Msa0650490:CDS
GGAATTGCATCTGAAGGAGG+GGG 0.576661 4_3:-57532923 None:intergenic
ATGGAATTGCATCTGAAGGA+GGG 0.577415 4_3:-57532925 None:intergenic
GTTGGACCACACCTATATTG+AGG 0.578310 4_3:-57533038 None:intergenic
ATAAATGGAATTGCATCTGA+AGG 0.579622 4_3:-57532929 None:intergenic
GCTATGAGGTTCCAGTTCTG+AGG 0.581001 4_3:-57531524 None:intergenic
TGGTAGTAACCACTTGGTGT+TGG 0.581787 4_3:-57532719 None:intergenic
TGCATTGGCATCATATATTG+TGG 0.585044 4_3:-57532749 None:intergenic
AGATTGCTATATCTCTAAGG+AGG 0.589574 4_3:+57531232 Msa0650490:CDS
GGAAGGTTAATATAATAAGG+TGG 0.591119 4_3:-57531990 None:intergenic
CAACAACAGTGATGATGGTG+GGG 0.593787 4_3:+57531322 Msa0650490:CDS
GCCAAATGAGAAGCTGGGAT+AGG 0.603807 4_3:+57532654 Msa0650490:CDS
ATACCAGAAAAGAAATCAAG+TGG 0.605787 4_3:-57532167 None:intergenic
TTATAGCCAAATGAGAAGCT+GGG 0.610885 4_3:+57532649 Msa0650490:CDS
ATCATGTAGCTCCTACTCCA+AGG 0.613783 4_3:-57532958 None:intergenic
TGGTACTGGTTCCATTCCTG+TGG 0.614514 4_3:-57531964 None:intergenic
TTCCATGGTGTAATTGATGG+TGG 0.616806 4_3:+57532059 Msa0650490:CDS
GCAAACAAGCCAATAGGAGT+AGG 0.624596 4_3:-57532134 None:intergenic
TGGAACACTTGGCTATAACA+TGG 0.626300 4_3:+57532016 Msa0650490:CDS
AATCAAGTGCTTACAGAAGG+AGG 0.630536 4_3:+57531871 Msa0650490:CDS
AGGTTAATATAATAAGGTGG+TGG 0.631664 4_3:-57531987 None:intergenic
TATTCATGGTAGTAACCACT+TGG 0.633915 4_3:-57532725 None:intergenic
AATGAGAATAGTTATGTCAG+TGG 0.634765 4_3:+57531404 Msa0650490:CDS
AATGGAATTGCATCTGAAGG+AGG 0.642777 4_3:-57532926 None:intergenic
ACACCAACACCAACACCAAG+TGG 0.652789 4_3:+57532710 Msa0650490:CDS
TGAAGTTTCACTATCATCAG+TGG 0.653083 4_3:+57532859 Msa0650490:CDS
GATTGCTATATCTCTAAGGA+GGG 0.657489 4_3:+57531233 Msa0650490:CDS
GGGAATGGTCTATGCAAACA+TGG 0.665000 4_3:+57531166 Msa0650490:CDS
AACAACAACAGTGATGATGG+TGG 0.670826 4_3:+57531320 Msa0650490:CDS
GAAGCTCCTCAATATAGGTG+TGG 0.675323 4_3:+57533032 Msa0650490:three_prime_UTR
CAAGTGCTTACAGAAGGAGG+AGG 0.676260 4_3:+57531874 Msa0650490:CDS
CACCACCATCAATTACACCA+TGG 0.685672 4_3:-57532061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCATTTTTTATTGTTATA+TGG + chr4_3:57532367-57532386 Msa0650490:intron 10.0%
!! AATTAGATATTAATAAACTT+TGG - chr4_3:57532413-57532432 None:intergenic 10.0%
!!! AATCATTTTTTATTGTTATA+TGG + chr4_3:57532367-57532386 Msa0650490:intron 10.0%
!! AATTAGATATTAATAAACTT+TGG - chr4_3:57532413-57532432 None:intergenic 10.0%
!!! TTTTTTTTTTTTGGATTTGA+AGG + chr4_3:57531642-57531661 Msa0650490:intron 15.0%
!!! ATATTAATGTTTTCTTGAAA+TGG + chr4_3:57532594-57532613 Msa0650490:intron 15.0%
!!! TTTTTTTTTTTTGGATTTGA+AGG + chr4_3:57531642-57531661 Msa0650490:intron 15.0%
!!! ATATTAATGTTTTCTTGAAA+TGG + chr4_3:57532594-57532613 Msa0650490:intron 15.0%
!! TTATATTGAAAGAAACTTTG+AGG + chr4_3:57531295-57531314 Msa0650490:CDS 20.0%
!! ATAGAATTTATGGTAACAAA+TGG + chr4_3:57531760-57531779 Msa0650490:CDS 20.0%
!! TAGAATTTATGGTAACAAAT+GGG + chr4_3:57531761-57531780 Msa0650490:CDS 20.0%
!! TTTGGAAGGTTAATATAATA+AGG - chr4_3:57531996-57532015 None:intergenic 20.0%
!! TATTATATTAACCTTCCAAA+TGG + chr4_3:57531996-57532015 Msa0650490:CDS 20.0%
!!! ATTTTCCTTTCATAGATTAT+TGG - chr4_3:57532256-57532275 None:intergenic 20.0%
!! GATTAATTAAAAATCCTCAT+GGG - chr4_3:57532351-57532370 None:intergenic 20.0%
!! TGATTAATTAAAAATCCTCA+TGG - chr4_3:57532352-57532371 None:intergenic 20.0%
!!! CATTTTTTATTGTTATATGG+TGG + chr4_3:57532370-57532389 Msa0650490:intron 20.0%
!!! CTAATTTTCATCTATCATTT+TGG + chr4_3:57532427-57532446 Msa0650490:intron 20.0%
!! TTATATTGAAAGAAACTTTG+AGG + chr4_3:57531295-57531314 Msa0650490:CDS 20.0%
!! ATAGAATTTATGGTAACAAA+TGG + chr4_3:57531760-57531779 Msa0650490:CDS 20.0%
!! TAGAATTTATGGTAACAAAT+GGG + chr4_3:57531761-57531780 Msa0650490:CDS 20.0%
!! TTTGGAAGGTTAATATAATA+AGG - chr4_3:57531996-57532015 None:intergenic 20.0%
!! TATTATATTAACCTTCCAAA+TGG + chr4_3:57531996-57532015 Msa0650490:CDS 20.0%
!!! ATTTTCCTTTCATAGATTAT+TGG - chr4_3:57532256-57532275 None:intergenic 20.0%
!! GATTAATTAAAAATCCTCAT+GGG - chr4_3:57532351-57532370 None:intergenic 20.0%
!! TGATTAATTAAAAATCCTCA+TGG - chr4_3:57532352-57532371 None:intergenic 20.0%
!!! CATTTTTTATTGTTATATGG+TGG + chr4_3:57532370-57532389 Msa0650490:intron 20.0%
!!! CTAATTTTCATCTATCATTT+TGG + chr4_3:57532427-57532446 Msa0650490:intron 20.0%
! ATATAACATTCCCTCATAAA+TGG - chr4_3:57531281-57531300 None:intergenic 25.0%
! TGACATAACTATTCTCATTA+GGG - chr4_3:57531403-57531422 None:intergenic 25.0%
! TTGAACCAATAATCTATGAA+AGG + chr4_3:57532248-57532267 Msa0650490:intron 25.0%
!! ACCTTCATTTAGTTATCTTT+TGG + chr4_3:57532477-57532496 Msa0650490:intron 25.0%
! ACCAAAAGATAACTAAATGA+AGG - chr4_3:57532481-57532500 None:intergenic 25.0%
! ATTTGTGCAGATTTAAGAAA+GGG - chr4_3:57532521-57532540 None:intergenic 25.0%
!! AATGTTTTCTTGAAATGGAT+TGG + chr4_3:57532599-57532618 Msa0650490:intron 25.0%
! TGATTATCATGTAAATCACT+TGG - chr4_3:57532680-57532699 None:intergenic 25.0%
! TCATATATTGTGGATATTCA+TGG - chr4_3:57532742-57532761 None:intergenic 25.0%
! ATATAACATTCCCTCATAAA+TGG - chr4_3:57531281-57531300 None:intergenic 25.0%
! TGACATAACTATTCTCATTA+GGG - chr4_3:57531403-57531422 None:intergenic 25.0%
! TTGAACCAATAATCTATGAA+AGG + chr4_3:57532248-57532267 Msa0650490:intron 25.0%
!! ACCTTCATTTAGTTATCTTT+TGG + chr4_3:57532477-57532496 Msa0650490:intron 25.0%
! ACCAAAAGATAACTAAATGA+AGG - chr4_3:57532481-57532500 None:intergenic 25.0%
! ATTTGTGCAGATTTAAGAAA+GGG - chr4_3:57532521-57532540 None:intergenic 25.0%
!! AATGTTTTCTTGAAATGGAT+TGG + chr4_3:57532599-57532618 Msa0650490:intron 25.0%
! TGATTATCATGTAAATCACT+TGG - chr4_3:57532680-57532699 None:intergenic 25.0%
! TCATATATTGTGGATATTCA+TGG - chr4_3:57532742-57532761 None:intergenic 25.0%
TCAAGATTGCTATATCTCTA+AGG + chr4_3:57531229-57531248 Msa0650490:CDS 30.0%
!! ATTGGTCTTTACCATTTATG+AGG + chr4_3:57531267-57531286 Msa0650490:CDS 30.0%
! TTGGTCTTTACCATTTATGA+GGG + chr4_3:57531268-57531287 Msa0650490:CDS 30.0%
CTGACATAACTATTCTCATT+AGG - chr4_3:57531404-57531423 None:intergenic 30.0%
AATGAGAATAGTTATGTCAG+TGG + chr4_3:57531404-57531423 Msa0650490:CDS 30.0%
!! AAAGAACTTGTTGCTCTTTA+TGG + chr4_3:57531500-57531519 Msa0650490:CDS 30.0%
!! TTTGTTGTGTCCTCTATTTT+TGG + chr4_3:57531589-57531608 Msa0650490:intron 30.0%
!! TTGTTGTGTCCTCTATTTTT+GGG + chr4_3:57531590-57531609 Msa0650490:intron 30.0%
TATTAATCCTTGGATCCAAT+TGG - chr4_3:57531695-57531714 None:intergenic 30.0%
AAAGCTCTTCTATTAATCCT+TGG - chr4_3:57531705-57531724 None:intergenic 30.0%
ATGCAAGCTCATAGAATTTA+TGG + chr4_3:57531750-57531769 Msa0650490:CDS 30.0%
ATAATGCTGTTAAGAATCAC+TGG + chr4_3:57531817-57531836 Msa0650490:CDS 30.0%
TCAATCTGTTTACAGAAGAA+TGG + chr4_3:57531902-57531921 Msa0650490:CDS 30.0%
! TTAATATAATAAGGTGGTGG+TGG - chr4_3:57531987-57532006 None:intergenic 30.0%
AGGTTAATATAATAAGGTGG+TGG - chr4_3:57531990-57532009 None:intergenic 30.0%
GGAAGGTTAATATAATAAGG+TGG - chr4_3:57531993-57532012 None:intergenic 30.0%
TTTCCATATTCATCTTTCCA+TGG + chr4_3:57532044-57532063 Msa0650490:CDS 30.0%
ATACCAGAAAAGAAATCAAG+TGG - chr4_3:57532170-57532189 None:intergenic 30.0%
! TTTGCTATATGTGCATGTTT+AGG + chr4_3:57532199-57532218 Msa0650490:intron 30.0%
! TATATGTGCATGTTTAGGTT+AGG + chr4_3:57532204-57532223 Msa0650490:intron 30.0%
ATGATCTTGTTGAAACTCAA+GGG - chr4_3:57532281-57532300 None:intergenic 30.0%
GATTTGTGCAGATTTAAGAA+AGG - chr4_3:57532522-57532541 None:intergenic 30.0%
TTCTTAAATCTGCACAAATC+AGG + chr4_3:57532522-57532541 Msa0650490:intron 30.0%
!!! TTGAAATGGATTGGATTTTC+AGG + chr4_3:57532608-57532627 Msa0650490:intron 30.0%
!!! TTGTTGTTTTGTTGTTGCAT+TGG - chr4_3:57532767-57532786 None:intergenic 30.0%
ACAACAACAGTACAGATATT+AGG + chr4_3:57532833-57532852 Msa0650490:CDS 30.0%
ATAAATGGAATTGCATCTGA+AGG - chr4_3:57532932-57532951 None:intergenic 30.0%
!! ATTCCATTTATTGACTTCCT+TGG + chr4_3:57532941-57532960 Msa0650490:CDS 30.0%
GAGCTTCAATGGAAAAAAAA+GGG - chr4_3:57533019-57533038 None:intergenic 30.0%
!!! GAATGGTTTTTAGGTAATGT+TGG - chr4_3:57533059-57533078 None:intergenic 30.0%
CTTTCTTTCTCACATCATAT+GGG + chr4_3:57533168-57533187 Msa0650490:three_prime_UTR 30.0%
TCAAGATTGCTATATCTCTA+AGG + chr4_3:57531229-57531248 Msa0650490:CDS 30.0%
!! ATTGGTCTTTACCATTTATG+AGG + chr4_3:57531267-57531286 Msa0650490:CDS 30.0%
! TTGGTCTTTACCATTTATGA+GGG + chr4_3:57531268-57531287 Msa0650490:CDS 30.0%
CTGACATAACTATTCTCATT+AGG - chr4_3:57531404-57531423 None:intergenic 30.0%
AATGAGAATAGTTATGTCAG+TGG + chr4_3:57531404-57531423 Msa0650490:CDS 30.0%
!! AAAGAACTTGTTGCTCTTTA+TGG + chr4_3:57531500-57531519 Msa0650490:CDS 30.0%
!! TTTGTTGTGTCCTCTATTTT+TGG + chr4_3:57531589-57531608 Msa0650490:intron 30.0%
!! TTGTTGTGTCCTCTATTTTT+GGG + chr4_3:57531590-57531609 Msa0650490:intron 30.0%
TATTAATCCTTGGATCCAAT+TGG - chr4_3:57531695-57531714 None:intergenic 30.0%
AAAGCTCTTCTATTAATCCT+TGG - chr4_3:57531705-57531724 None:intergenic 30.0%
ATGCAAGCTCATAGAATTTA+TGG + chr4_3:57531750-57531769 Msa0650490:CDS 30.0%
ATAATGCTGTTAAGAATCAC+TGG + chr4_3:57531817-57531836 Msa0650490:CDS 30.0%
TCAATCTGTTTACAGAAGAA+TGG + chr4_3:57531902-57531921 Msa0650490:CDS 30.0%
! TTAATATAATAAGGTGGTGG+TGG - chr4_3:57531987-57532006 None:intergenic 30.0%
AGGTTAATATAATAAGGTGG+TGG - chr4_3:57531990-57532009 None:intergenic 30.0%
GGAAGGTTAATATAATAAGG+TGG - chr4_3:57531993-57532012 None:intergenic 30.0%
TTTCCATATTCATCTTTCCA+TGG + chr4_3:57532044-57532063 Msa0650490:CDS 30.0%
ATACCAGAAAAGAAATCAAG+TGG - chr4_3:57532170-57532189 None:intergenic 30.0%
! TTTGCTATATGTGCATGTTT+AGG + chr4_3:57532199-57532218 Msa0650490:intron 30.0%
! TATATGTGCATGTTTAGGTT+AGG + chr4_3:57532204-57532223 Msa0650490:intron 30.0%
ATGATCTTGTTGAAACTCAA+GGG - chr4_3:57532281-57532300 None:intergenic 30.0%
GATTTGTGCAGATTTAAGAA+AGG - chr4_3:57532522-57532541 None:intergenic 30.0%
TTCTTAAATCTGCACAAATC+AGG + chr4_3:57532522-57532541 Msa0650490:intron 30.0%
!!! TTGAAATGGATTGGATTTTC+AGG + chr4_3:57532608-57532627 Msa0650490:intron 30.0%
!!! TTGTTGTTTTGTTGTTGCAT+TGG - chr4_3:57532767-57532786 None:intergenic 30.0%
ACAACAACAGTACAGATATT+AGG + chr4_3:57532833-57532852 Msa0650490:CDS 30.0%
ATAAATGGAATTGCATCTGA+AGG - chr4_3:57532932-57532951 None:intergenic 30.0%
!! ATTCCATTTATTGACTTCCT+TGG + chr4_3:57532941-57532960 Msa0650490:CDS 30.0%
GAGCTTCAATGGAAAAAAAA+GGG - chr4_3:57533019-57533038 None:intergenic 30.0%
!!! GAATGGTTTTTAGGTAATGT+TGG - chr4_3:57533059-57533078 None:intergenic 30.0%
CTTTCTTTCTCACATCATAT+GGG + chr4_3:57533168-57533187 Msa0650490:three_prime_UTR 30.0%
! AGATTGCTATATCTCTAAGG+AGG + chr4_3:57531232-57531251 Msa0650490:CDS 35.0%
! GATTGCTATATCTCTAAGGA+GGG + chr4_3:57531233-57531252 Msa0650490:CDS 35.0%
GAAAACAACAACAGTGATGA+TGG + chr4_3:57531317-57531336 Msa0650490:CDS 35.0%
TAGTTATGTCAGTGGTAAAG+AGG + chr4_3:57531412-57531431 Msa0650490:CDS 35.0%
ATAGAGGACACAACAAAAAG+AGG - chr4_3:57531586-57531605 None:intergenic 35.0%
AGAAAGTGACCCAAAAATAG+AGG - chr4_3:57531602-57531621 None:intergenic 35.0%
! AAGAGCTTTTAGTGATGAAG+AGG + chr4_3:57531716-57531735 Msa0650490:CDS 35.0%
GAATCACTGGCATGTTATAA+TGG + chr4_3:57531830-57531849 Msa0650490:CDS 35.0%
AACAATCAAGTGCTTACAGA+AGG + chr4_3:57531868-57531887 Msa0650490:CDS 35.0%
! AGAATACAAGCTTTGTCTCT+AGG + chr4_3:57531928-57531947 Msa0650490:CDS 35.0%
! GAATACAAGCTTTGTCTCTA+GGG + chr4_3:57531929-57531948 Msa0650490:CDS 35.0%
TTATAGCCAAGTGTTCCATT+TGG - chr4_3:57532014-57532033 None:intergenic 35.0%
ACACCATGGAAAGATGAATA+TGG - chr4_3:57532050-57532069 None:intergenic 35.0%
TCTTTCCATGGTGTAATTGA+TGG + chr4_3:57532056-57532075 Msa0650490:CDS 35.0%
! TCACCACTTGATTTCTTTTC+TGG + chr4_3:57532164-57532183 Msa0650490:CDS 35.0%
CATGATCTTGTTGAAACTCA+AGG - chr4_3:57532282-57532301 None:intergenic 35.0%
!!! AAATGGATTGGATTTTCAGG+AGG + chr4_3:57532611-57532630 Msa0650490:intron 35.0%
ATTATAGCCAAATGAGAAGC+TGG + chr4_3:57532648-57532667 Msa0650490:CDS 35.0%
TTATAGCCAAATGAGAAGCT+GGG + chr4_3:57532649-57532668 Msa0650490:CDS 35.0%
TATTCATGGTAGTAACCACT+TGG - chr4_3:57532728-57532747 None:intergenic 35.0%
! TGCATTGGCATCATATATTG+TGG - chr4_3:57532752-57532771 None:intergenic 35.0%
TGAAGTTTCACTATCATCAG+TGG + chr4_3:57532859-57532878 Msa0650490:CDS 35.0%
ACTCCAAGGAAGTCAATAAA+TGG - chr4_3:57532947-57532966 None:intergenic 35.0%
!! TTTATTGACTTCCTTGGAGT+AGG + chr4_3:57532947-57532966 Msa0650490:CDS 35.0%
! TTGCATTGCAGCTTTTTGAT+TGG - chr4_3:57532996-57533015 None:intergenic 35.0%
GGAGCTTCAATGGAAAAAAA+AGG - chr4_3:57533020-57533039 None:intergenic 35.0%
CATTACCTAAAAACCATTCG+AGG + chr4_3:57533060-57533079 Msa0650490:three_prime_UTR 35.0%
! GTTTACCTCGAATGGTTTTT+AGG - chr4_3:57533068-57533087 None:intergenic 35.0%
AAAGGATAGTTGCTCTACTT+TGG + chr4_3:57533090-57533109 Msa0650490:three_prime_UTR 35.0%
CCATATGATGTGAGAAAGAA+AGG - chr4_3:57533170-57533189 None:intergenic 35.0%
CCTTTCTTTCTCACATCATA+TGG + chr4_3:57533167-57533186 Msa0650490:three_prime_UTR 35.0%
! AGATTGCTATATCTCTAAGG+AGG + chr4_3:57531232-57531251 Msa0650490:CDS 35.0%
! GATTGCTATATCTCTAAGGA+GGG + chr4_3:57531233-57531252 Msa0650490:CDS 35.0%
GAAAACAACAACAGTGATGA+TGG + chr4_3:57531317-57531336 Msa0650490:CDS 35.0%
TAGTTATGTCAGTGGTAAAG+AGG + chr4_3:57531412-57531431 Msa0650490:CDS 35.0%
ATAGAGGACACAACAAAAAG+AGG - chr4_3:57531586-57531605 None:intergenic 35.0%
AGAAAGTGACCCAAAAATAG+AGG - chr4_3:57531602-57531621 None:intergenic 35.0%
! AAGAGCTTTTAGTGATGAAG+AGG + chr4_3:57531716-57531735 Msa0650490:CDS 35.0%
GAATCACTGGCATGTTATAA+TGG + chr4_3:57531830-57531849 Msa0650490:CDS 35.0%
AACAATCAAGTGCTTACAGA+AGG + chr4_3:57531868-57531887 Msa0650490:CDS 35.0%
! AGAATACAAGCTTTGTCTCT+AGG + chr4_3:57531928-57531947 Msa0650490:CDS 35.0%
! GAATACAAGCTTTGTCTCTA+GGG + chr4_3:57531929-57531948 Msa0650490:CDS 35.0%
TTATAGCCAAGTGTTCCATT+TGG - chr4_3:57532014-57532033 None:intergenic 35.0%
ACACCATGGAAAGATGAATA+TGG - chr4_3:57532050-57532069 None:intergenic 35.0%
TCTTTCCATGGTGTAATTGA+TGG + chr4_3:57532056-57532075 Msa0650490:CDS 35.0%
! TCACCACTTGATTTCTTTTC+TGG + chr4_3:57532164-57532183 Msa0650490:CDS 35.0%
CATGATCTTGTTGAAACTCA+AGG - chr4_3:57532282-57532301 None:intergenic 35.0%
!!! AAATGGATTGGATTTTCAGG+AGG + chr4_3:57532611-57532630 Msa0650490:intron 35.0%
ATTATAGCCAAATGAGAAGC+TGG + chr4_3:57532648-57532667 Msa0650490:CDS 35.0%
TTATAGCCAAATGAGAAGCT+GGG + chr4_3:57532649-57532668 Msa0650490:CDS 35.0%
TATTCATGGTAGTAACCACT+TGG - chr4_3:57532728-57532747 None:intergenic 35.0%
! TGCATTGGCATCATATATTG+TGG - chr4_3:57532752-57532771 None:intergenic 35.0%
TGAAGTTTCACTATCATCAG+TGG + chr4_3:57532859-57532878 Msa0650490:CDS 35.0%
ACTCCAAGGAAGTCAATAAA+TGG - chr4_3:57532947-57532966 None:intergenic 35.0%
!! TTTATTGACTTCCTTGGAGT+AGG + chr4_3:57532947-57532966 Msa0650490:CDS 35.0%
! TTGCATTGCAGCTTTTTGAT+TGG - chr4_3:57532996-57533015 None:intergenic 35.0%
GGAGCTTCAATGGAAAAAAA+AGG - chr4_3:57533020-57533039 None:intergenic 35.0%
CATTACCTAAAAACCATTCG+AGG + chr4_3:57533060-57533079 Msa0650490:three_prime_UTR 35.0%
! GTTTACCTCGAATGGTTTTT+AGG - chr4_3:57533068-57533087 None:intergenic 35.0%
AAAGGATAGTTGCTCTACTT+TGG + chr4_3:57533090-57533109 Msa0650490:three_prime_UTR 35.0%
CCATATGATGTGAGAAAGAA+AGG - chr4_3:57533170-57533189 None:intergenic 35.0%
CCTTTCTTTCTCACATCATA+TGG + chr4_3:57533167-57533186 Msa0650490:three_prime_UTR 35.0%
!! AGGAGGGTACTACTACTAAT+TGG + chr4_3:57531249-57531268 Msa0650490:CDS 40.0%
!! AACAACAACAGTGATGATGG+TGG + chr4_3:57531320-57531339 Msa0650490:CDS 40.0%
!! ACAACAACAGTGATGATGGT+GGG + chr4_3:57531321-57531340 Msa0650490:CDS 40.0%
!! GAAGGTAATGGTTCTGATTC+TGG + chr4_3:57531344-57531363 Msa0650490:CDS 40.0%
!! AATGGTTCTGATTCTGGTGA+TGG + chr4_3:57531350-57531369 Msa0650490:CDS 40.0%
AGTGGTAAAGAGGTAGATAC+TGG + chr4_3:57531422-57531441 Msa0650490:CDS 40.0%
CACTCTAAACTTTGTGCAAG+AGG + chr4_3:57531446-57531465 Msa0650490:CDS 40.0%
AACTTTGTGCAAGAGGTCAT+TGG + chr4_3:57531453-57531472 Msa0650490:CDS 40.0%
TTGAGCTTAGAATCTTCTGC+AGG - chr4_3:57531482-57531501 None:intergenic 40.0%
!!! CTTCTAGCTTTTCAGCTATG+AGG - chr4_3:57531541-57531560 None:intergenic 40.0%
CTCATAGCTGAAAAGCTAGA+AGG + chr4_3:57531539-57531558 Msa0650490:CDS 40.0%
GATTTGAAGGCAAGAGTTGT+AGG + chr4_3:57531655-57531674 Msa0650490:intron 40.0%
GCTAAGATGGTTCAACCAAT+TGG + chr4_3:57531677-57531696 Msa0650490:CDS 40.0%
CAGCATTATCTGTTCTTCCA+GGG - chr4_3:57531806-57531825 None:intergenic 40.0%
ACAGCATTATCTGTTCTTCC+AGG - chr4_3:57531807-57531826 None:intergenic 40.0%
AATCAAGTGCTTACAGAAGG+AGG + chr4_3:57531871-57531890 Msa0650490:CDS 40.0%
AACCTTCCAAATGGAACACT+TGG + chr4_3:57532005-57532024 Msa0650490:CDS 40.0%
TGGAACACTTGGCTATAACA+TGG + chr4_3:57532016-57532035 Msa0650490:CDS 40.0%
TTCCATGGTGTAATTGATGG+TGG + chr4_3:57532059-57532078 Msa0650490:CDS 40.0%
TGTTGAGCAAACAAGCCAAT+AGG - chr4_3:57532143-57532162 None:intergenic 40.0%
ATCCTCATGGGAATGAATGT+AGG - chr4_3:57532339-57532358 None:intergenic 40.0%
ATGGAATTGCATCTGAAGGA+GGG - chr4_3:57532928-57532947 None:intergenic 40.0%
AATGGAATTGCATCTGAAGG+AGG - chr4_3:57532929-57532948 None:intergenic 40.0%
CCTATATTGAGGAGCTTCAA+TGG - chr4_3:57533030-57533049 None:intergenic 40.0%
CCATTGAAGCTCCTCAATAT+AGG + chr4_3:57533027-57533046 Msa0650490:three_prime_UTR 40.0%
ACCATTCGAGGTAAACAGAA+AGG + chr4_3:57533072-57533091 Msa0650490:three_prime_UTR 40.0%
TCCTTTCTGTTTACCTCGAA+TGG - chr4_3:57533076-57533095 None:intergenic 40.0%
AAGGAGATGAGAAGAGAGAT+AGG - chr4_3:57533151-57533170 None:intergenic 40.0%
!! AGGAGGGTACTACTACTAAT+TGG + chr4_3:57531249-57531268 Msa0650490:CDS 40.0%
!! AACAACAACAGTGATGATGG+TGG + chr4_3:57531320-57531339 Msa0650490:CDS 40.0%
!! ACAACAACAGTGATGATGGT+GGG + chr4_3:57531321-57531340 Msa0650490:CDS 40.0%
!! GAAGGTAATGGTTCTGATTC+TGG + chr4_3:57531344-57531363 Msa0650490:CDS 40.0%
!! AATGGTTCTGATTCTGGTGA+TGG + chr4_3:57531350-57531369 Msa0650490:CDS 40.0%
AGTGGTAAAGAGGTAGATAC+TGG + chr4_3:57531422-57531441 Msa0650490:CDS 40.0%
CACTCTAAACTTTGTGCAAG+AGG + chr4_3:57531446-57531465 Msa0650490:CDS 40.0%
AACTTTGTGCAAGAGGTCAT+TGG + chr4_3:57531453-57531472 Msa0650490:CDS 40.0%
TTGAGCTTAGAATCTTCTGC+AGG - chr4_3:57531482-57531501 None:intergenic 40.0%
!!! CTTCTAGCTTTTCAGCTATG+AGG - chr4_3:57531541-57531560 None:intergenic 40.0%
CTCATAGCTGAAAAGCTAGA+AGG + chr4_3:57531539-57531558 Msa0650490:CDS 40.0%
GATTTGAAGGCAAGAGTTGT+AGG + chr4_3:57531655-57531674 Msa0650490:intron 40.0%
GCTAAGATGGTTCAACCAAT+TGG + chr4_3:57531677-57531696 Msa0650490:CDS 40.0%
CAGCATTATCTGTTCTTCCA+GGG - chr4_3:57531806-57531825 None:intergenic 40.0%
ACAGCATTATCTGTTCTTCC+AGG - chr4_3:57531807-57531826 None:intergenic 40.0%
AATCAAGTGCTTACAGAAGG+AGG + chr4_3:57531871-57531890 Msa0650490:CDS 40.0%
AACCTTCCAAATGGAACACT+TGG + chr4_3:57532005-57532024 Msa0650490:CDS 40.0%
TGGAACACTTGGCTATAACA+TGG + chr4_3:57532016-57532035 Msa0650490:CDS 40.0%
TTCCATGGTGTAATTGATGG+TGG + chr4_3:57532059-57532078 Msa0650490:CDS 40.0%
TGTTGAGCAAACAAGCCAAT+AGG - chr4_3:57532143-57532162 None:intergenic 40.0%
ATCCTCATGGGAATGAATGT+AGG - chr4_3:57532339-57532358 None:intergenic 40.0%
ATGGAATTGCATCTGAAGGA+GGG - chr4_3:57532928-57532947 None:intergenic 40.0%
AATGGAATTGCATCTGAAGG+AGG - chr4_3:57532929-57532948 None:intergenic 40.0%
CCTATATTGAGGAGCTTCAA+TGG - chr4_3:57533030-57533049 None:intergenic 40.0%
CCATTGAAGCTCCTCAATAT+AGG + chr4_3:57533027-57533046 Msa0650490:three_prime_UTR 40.0%
ACCATTCGAGGTAAACAGAA+AGG + chr4_3:57533072-57533091 Msa0650490:three_prime_UTR 40.0%
TCCTTTCTGTTTACCTCGAA+TGG - chr4_3:57533076-57533095 None:intergenic 40.0%
AAGGAGATGAGAAGAGAGAT+AGG - chr4_3:57533151-57533170 None:intergenic 40.0%
GGGAATGGTCTATGCAAACA+TGG + chr4_3:57531166-57531185 Msa0650490:CDS 45.0%
!! CAACAACAGTGATGATGGTG+GGG + chr4_3:57531322-57531341 Msa0650490:CDS 45.0%
!! TCTGATTCTGGTGATGGTGT+TGG + chr4_3:57531356-57531375 Msa0650490:CDS 45.0%
CTCTTTATGGTCCTCAGAAC+TGG + chr4_3:57531513-57531532 Msa0650490:CDS 45.0%
GAAAAGCTAGAAGGCAGATC+AGG + chr4_3:57531548-57531567 Msa0650490:CDS 45.0%
GCAAGAGTTGTAGGCTAAGA+TGG + chr4_3:57531664-57531683 Msa0650490:CDS 45.0%
GGTTCAACCAATTGGATCCA+AGG + chr4_3:57531685-57531704 Msa0650490:CDS 45.0%
ACAAATGGGCCATGATTGCA+AGG + chr4_3:57531775-57531794 Msa0650490:CDS 45.0%
AGGGAAAAGCCTTGCAATCA+TGG - chr4_3:57531787-57531806 None:intergenic 45.0%
! ATGATTGCAAGGCTTTTCCC+TGG + chr4_3:57531786-57531805 Msa0650490:CDS 45.0%
TATAGTCACAGCCACAGGAA+TGG + chr4_3:57531953-57531972 Msa0650490:CDS 45.0%
!! TAATAAGGTGGTGGTGGTAC+TGG - chr4_3:57531981-57532000 None:intergenic 45.0%
AGCCAAGTGTTCCATTTGGA+AGG - chr4_3:57532010-57532029 None:intergenic 45.0%
CACCACCATCAATTACACCA+TGG - chr4_3:57532064-57532083 None:intergenic 45.0%
!! ATTGATGGTGGTGTTGAGTG+TGG + chr4_3:57532071-57532090 Msa0650490:CDS 45.0%
! GGTGTTGAGTGTGGCTTAAA+TGG + chr4_3:57532080-57532099 Msa0650490:CDS 45.0%
AAGCAAGCACCTACTCCTAT+TGG + chr4_3:57532125-57532144 Msa0650490:CDS 45.0%
GCAAACAAGCCAATAGGAGT+AGG - chr4_3:57532137-57532156 None:intergenic 45.0%
CATGGGAATGAATGTAGGCA+TGG - chr4_3:57532334-57532353 None:intergenic 45.0%
TGCCTACATTCATTCCCATG+AGG + chr4_3:57532334-57532353 Msa0650490:intron 45.0%
!! TAACCACTTGGTGTTGGTGT+TGG - chr4_3:57532716-57532735 None:intergenic 45.0%
!! TGGTAGTAACCACTTGGTGT+TGG - chr4_3:57532722-57532741 None:intergenic 45.0%
TGGAATTGCATCTGAAGGAG+GGG - chr4_3:57532927-57532946 None:intergenic 45.0%
ATCATGTAGCTCCTACTCCA+AGG - chr4_3:57532961-57532980 None:intergenic 45.0%
GAAGCTCCTCAATATAGGTG+TGG + chr4_3:57533032-57533051 Msa0650490:three_prime_UTR 45.0%
GTTGGACCACACCTATATTG+AGG - chr4_3:57533041-57533060 None:intergenic 45.0%
GTTTGCATAGACCATTCCCA+TGG - chr4_3:57531165-57531184 None:intergenic 45.0%
GGGAATGGTCTATGCAAACA+TGG + chr4_3:57531166-57531185 Msa0650490:CDS 45.0%
!! CAACAACAGTGATGATGGTG+GGG + chr4_3:57531322-57531341 Msa0650490:CDS 45.0%
!! TCTGATTCTGGTGATGGTGT+TGG + chr4_3:57531356-57531375 Msa0650490:CDS 45.0%
CTCTTTATGGTCCTCAGAAC+TGG + chr4_3:57531513-57531532 Msa0650490:CDS 45.0%
GAAAAGCTAGAAGGCAGATC+AGG + chr4_3:57531548-57531567 Msa0650490:CDS 45.0%
GCAAGAGTTGTAGGCTAAGA+TGG + chr4_3:57531664-57531683 Msa0650490:CDS 45.0%
GGTTCAACCAATTGGATCCA+AGG + chr4_3:57531685-57531704 Msa0650490:CDS 45.0%
ACAAATGGGCCATGATTGCA+AGG + chr4_3:57531775-57531794 Msa0650490:CDS 45.0%
AGGGAAAAGCCTTGCAATCA+TGG - chr4_3:57531787-57531806 None:intergenic 45.0%
! ATGATTGCAAGGCTTTTCCC+TGG + chr4_3:57531786-57531805 Msa0650490:CDS 45.0%
TATAGTCACAGCCACAGGAA+TGG + chr4_3:57531953-57531972 Msa0650490:CDS 45.0%
!! TAATAAGGTGGTGGTGGTAC+TGG - chr4_3:57531981-57532000 None:intergenic 45.0%
AGCCAAGTGTTCCATTTGGA+AGG - chr4_3:57532010-57532029 None:intergenic 45.0%
CACCACCATCAATTACACCA+TGG - chr4_3:57532064-57532083 None:intergenic 45.0%
!! ATTGATGGTGGTGTTGAGTG+TGG + chr4_3:57532071-57532090 Msa0650490:CDS 45.0%
! GGTGTTGAGTGTGGCTTAAA+TGG + chr4_3:57532080-57532099 Msa0650490:CDS 45.0%
AAGCAAGCACCTACTCCTAT+TGG + chr4_3:57532125-57532144 Msa0650490:CDS 45.0%
GCAAACAAGCCAATAGGAGT+AGG - chr4_3:57532137-57532156 None:intergenic 45.0%
CATGGGAATGAATGTAGGCA+TGG - chr4_3:57532334-57532353 None:intergenic 45.0%
TGCCTACATTCATTCCCATG+AGG + chr4_3:57532334-57532353 Msa0650490:intron 45.0%
!! TAACCACTTGGTGTTGGTGT+TGG - chr4_3:57532716-57532735 None:intergenic 45.0%
!! TGGTAGTAACCACTTGGTGT+TGG - chr4_3:57532722-57532741 None:intergenic 45.0%
TGGAATTGCATCTGAAGGAG+GGG - chr4_3:57532927-57532946 None:intergenic 45.0%
ATCATGTAGCTCCTACTCCA+AGG - chr4_3:57532961-57532980 None:intergenic 45.0%
GAAGCTCCTCAATATAGGTG+TGG + chr4_3:57533032-57533051 Msa0650490:three_prime_UTR 45.0%
GTTGGACCACACCTATATTG+AGG - chr4_3:57533041-57533060 None:intergenic 45.0%
!!! TTAACTTTTTTTTTTTTTTT+TGG + chr4_3:57531633-57531652 Msa0650490:intron 5.0%
!!! TTAACTTTTTTTTTTTTTTT+TGG + chr4_3:57531633-57531652 Msa0650490:intron 5.0%
!! AACAGTGATGATGGTGGGGA+AGG + chr4_3:57531326-57531345 Msa0650490:CDS 50.0%
!! GATGATGGTGGGGAAGGTAA+TGG + chr4_3:57531332-57531351 Msa0650490:CDS 50.0%
GCTATGAGGTTCCAGTTCTG+AGG - chr4_3:57531527-57531546 None:intergenic 50.0%
CAAGTGCTTACAGAAGGAGG+AGG + chr4_3:57531874-57531893 Msa0650490:CDS 50.0%
AGGGATATAGTCACAGCCAC+AGG + chr4_3:57531948-57531967 Msa0650490:CDS 50.0%
!! TGGTACTGGTTCCATTCCTG+TGG - chr4_3:57531967-57531986 None:intergenic 50.0%
GCCAAATGAGAAGCTGGGAT+AGG + chr4_3:57532654-57532673 Msa0650490:CDS 50.0%
GCCTATCCCAGCTTCTCATT+TGG - chr4_3:57532658-57532677 None:intergenic 50.0%
!! GTTGGTGTTGGTGTTGGTGT+TGG - chr4_3:57532704-57532723 None:intergenic 50.0%
!! CTTGGTGTTGGTGTTGGTGT+TGG - chr4_3:57532710-57532729 None:intergenic 50.0%
ACACCAACACCAACACCAAG+TGG + chr4_3:57532710-57532729 Msa0650490:CDS 50.0%
! TGTTGTTGTTGCTGCTGCTG+TGG - chr4_3:57532819-57532838 None:intergenic 50.0%
GGAATTGCATCTGAAGGAGG+GGG - chr4_3:57532926-57532945 None:intergenic 50.0%
!! AACAGTGATGATGGTGGGGA+AGG + chr4_3:57531326-57531345 Msa0650490:CDS 50.0%
!! GATGATGGTGGGGAAGGTAA+TGG + chr4_3:57531332-57531351 Msa0650490:CDS 50.0%
GCTATGAGGTTCCAGTTCTG+AGG - chr4_3:57531527-57531546 None:intergenic 50.0%
CAAGTGCTTACAGAAGGAGG+AGG + chr4_3:57531874-57531893 Msa0650490:CDS 50.0%
AGGGATATAGTCACAGCCAC+AGG + chr4_3:57531948-57531967 Msa0650490:CDS 50.0%
!! TGGTACTGGTTCCATTCCTG+TGG - chr4_3:57531967-57531986 None:intergenic 50.0%
GCCAAATGAGAAGCTGGGAT+AGG + chr4_3:57532654-57532673 Msa0650490:CDS 50.0%
GCCTATCCCAGCTTCTCATT+TGG - chr4_3:57532658-57532677 None:intergenic 50.0%
!! GTTGGTGTTGGTGTTGGTGT+TGG - chr4_3:57532704-57532723 None:intergenic 50.0%
!! CTTGGTGTTGGTGTTGGTGT+TGG - chr4_3:57532710-57532729 None:intergenic 50.0%
ACACCAACACCAACACCAAG+TGG + chr4_3:57532710-57532729 Msa0650490:CDS 50.0%
! TGTTGTTGTTGCTGCTGCTG+TGG - chr4_3:57532819-57532838 None:intergenic 50.0%
GGAATTGCATCTGAAGGAGG+GGG - chr4_3:57532926-57532945 None:intergenic 50.0%
TGTTGTTGCTGCTGCTGTGG+TGG - chr4_3:57532816-57532835 None:intergenic 55.0%
TGTTGTTGCTGCTGCTGTGG+TGG - chr4_3:57532816-57532835 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 57531164 57533200 57531164 ID=Msa0650490;Name=Msa0650490
chr4_3 mRNA 57531164 57533200 57531164 ID=Msa0650490-mRNA-1;Parent=Msa0650490;Name=Msa0650490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.33|1|1|1|3|221|425
chr4_3 exon 57531164 57531569 57531164 ID=Msa0650490-mRNA-1:exon:15096;Parent=Msa0650490-mRNA-1
chr4_3 exon 57531664 57532185 57531664 ID=Msa0650490-mRNA-1:exon:15097;Parent=Msa0650490-mRNA-1
chr4_3 exon 57532630 57533200 57532630 ID=Msa0650490-mRNA-1:exon:15098;Parent=Msa0650490-mRNA-1
chr4_3 CDS 57531164 57531569 57531164 ID=Msa0650490-mRNA-1:cds;Parent=Msa0650490-mRNA-1
chr4_3 CDS 57531664 57532185 57531664 ID=Msa0650490-mRNA-1:cds;Parent=Msa0650490-mRNA-1
chr4_3 CDS 57532630 57532979 57532630 ID=Msa0650490-mRNA-1:cds;Parent=Msa0650490-mRNA-1
chr4_3 three_prime_UTR 57532980 57533200 57532980 ID=Msa0650490-mRNA-1:three_prime_utr;Parent=Msa0650490-mRNA-1
Gene Sequence

>Msa0650490

ATGGGAATGGTCTATGCAAACATGGAGTCTTTATCACTAAACTATGCTGCTTCTTCTTCTTCATCTCAAGATTGCTATATCTCTAAGGAGGGTACTACTACTAATTGGTCTTTACCATTTATGAGGGAATGTTATATTGAAAGAAACTTTGAGGAAAACAACAACAGTGATGATGGTGGGGAAGGTAATGGTTCTGATTCTGGTGATGGTGTTGGAGAAAACAGTGAAAAAATTAACCCTAATGAGAATAGTTATGTCAGTGGTAAAGAGGTAGATACTGGTCACTCTAAACTTTGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAAAAGCTAGAAGGCAGATCAGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGATGAAGAGGAAGAAAGATTAATGCAAGCTCATAGAATTTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCAAGTGCTTACAGAAGGAGGAGGCTGAATCAATCTGTTTACAGAAGAATGGAAGAGAATACAAGCTTTGTCTCTAGGGATATAGTCACAGCCACAGGAATGGAACCAGTACCACCACCACCTTATTATATTAACCTTCCAAATGGAACACTTGGCTATAACATGGCTAGTTTTCCATATTCATCTTTCCATGGTGTAATTGATGGTGGTGTTGAGTGTGGCTTAAATGGTTCAACTGCAGTCTCAAGTGACAAGCAAGCACCTACTCCTATTGGCTTGTTTGCTCAACAGTCACCACTTGATTTCTTTTCTGGAGGTAGAAGAAATGAGTATTATAGCCAAATGAGAAGCTGGGATAGGCCAAGTGATTTACATGATAATCAACCAACACCAACACCAACACCAACACCAAGTGGTTACTACCATGAATATCCACAATATATGATGCCAATGCAACAACAAAACAACAATTTTTACAGTTTCTCATCAAATATTTCCACCACAGCAGCAGCAACAACAACAACAGTACAGATATTAGGCAGTGAAGTTTCACTATCATCAGTGGTAGCAGCAGAAAATCACAGAGATCAAGTTCTGATGAGTAATCCCCCTCCTTCAGATGCAATTCCATTTATTGACTTCCTTGGAGTAGGAGCTACATGA
Protein sequence

>Msa0650490

MGMVYANMESLSLNYAASSSSSQDCYISKEGTTTNWSLPFMRECYIERNFEENNNSDDGGEGNGSDSGDGVGENSEKINPNENSYVSGKEVDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSDEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRMEENTSFVSRDIVTATGMEPVPPPPYYINLPNGTLGYNMASFPYSSFHGVIDGGVECGLNGSTAVSSDKQAPTPIGLFAQQSPLDFFSGGRRNEYYSQMRSWDRPSDLHDNQPTPTPTPTPSGYYHEYPQYMMPMQQQNNNFYSFSSNISTTAAATTTTVQILGSEVSLSSVVAAENHRDQVLMSNPPPSDAIPFIDFLGVGAT*