AlfalfaGEDB | Msa0692250

M. sativa cultivar zhongmu-4 / Msa0692250

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692250	AES89943.2	91.591	440	11	6	1	427	1	427	0.0	783

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692250	sp\|Q9SEZ4\|MY105_ARATH	77.397	146	25	2	76	213	74	219	4.53e-76	243

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692250	G7JG94	91.591	440	11	6	1	427	1	427	0.0	783

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TFs/TRs:

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Gene ID	Type	Classification
Msa0692250	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0527670	Msa0692250	0.918308	1.828348e-86	-8.615850e-47
Msa0609670	Msa0692250	0.903613	2.893192e-79	-8.615850e-47
Msa0650490	Msa0692250	0.903352	3.790064e-79	-8.615850e-47
Msa0692250	Msa1172630	0.910236	2.347271e-82	-8.615850e-47
Msa0692250	Msa1384380	0.981610	5.201162e-153	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692250	MtrunA17_Chr4g0042501	91.253	423	11	6	1	410	1	410	0.0	750
Msa0692250	MtrunA17_Chr5g0417621	55.263	456	138	21	1	427	23	441	2.03e-140	408
Msa0692250	MtrunA17_Chr7g0254261	77.444	133	30	0	81	213	69	201	1.71e-70	226
Msa0692250	MtrunA17_Chr3g0125801	63.314	169	53	4	96	263	11	171	1.77e-62	203
Msa0692250	MtrunA17_Chr6g0480581	52.874	174	74	2	98	270	1	167	1.96e-59	194
Msa0692250	MtrunA17_Chr6g0460671	68.333	120	38	0	94	213	92	211	6.72e-56	188
Msa0692250	MtrunA17_Chr6g0460661	58.407	113	47	0	100	212	15	127	1.29e-44	152
Msa0692250	MtrunA17_Chr4g0008551	57.843	102	43	0	100	201	37	138	2.44e-38	142
Msa0692250	MtrunA17_Chr5g0401731	50.420	119	53	1	83	201	3	115	3.88e-38	140
Msa0692250	MtrunA17_Chr4g0053431	58.416	101	42	0	101	201	5	105	1.80e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0692250	AT1G69560.1	77.397	146	25	2	76	213	74	219	4.60e-77	243
Msa0692250	AT1G69560.2	77.397	146	25	2	76	213	90	235	6.69e-77	243
Msa0692250	AT1G26780.1	88.034	117	14	0	98	214	95	211	3.55e-74	234
Msa0692250	AT1G26780.2	88.034	117	14	0	98	214	95	211	2.07e-73	234
Msa0692250	AT3G29020.1	75.214	117	29	0	96	212	60	176	3.92e-64	206
Msa0692250	AT3G29020.2	75.214	117	29	0	96	212	62	178	1.68e-63	207
Msa0692250	AT5G17800.1	79.817	109	22	0	96	204	88	196	9.08e-62	203
Msa0692250	AT1G17950.1	75.455	110	27	0	98	207	2	111	2.25e-59	194
Msa0692250	AT1G73410.1	77.982	109	24	0	98	206	3	111	3.04e-56	186
Msa0692250	AT1G73410.2	77.273	110	25	0	98	207	3	112	9.45e-56	183

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Find 114 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTTGCTGTTGGTGT+TGG	0.524679	4_4:+60653837	None:intergenic
AAAGAACTTGTTGCTCTTTA+TGG	0.054838	4_4:-60655049	Msa0692250:CDS
AAAGCTCTTCTATTAATCCT+TGG	0.450183	4_4:+60654847	None:intergenic
AAAGGATAGTTGCTCTACTT+TGG	0.430473	4_4:-60653460	Msa0692250:three_prime_UTR
AACAACAACAGTGATGATGG+TGG	0.670826	4_4:-60655229	Msa0692250:CDS
AACAATCAAGTGCTTACAGA+AGG	0.566019	4_4:-60654681	Msa0692250:CDS
AACAGTGATGATGGTGGGGA+AGG	0.545028	4_4:-60655223	Msa0692250:CDS
AACCTTCCAAATGGAACACT+TGG	0.485686	4_4:-60654544	Msa0692250:CDS
AACTTTGTGCAAGAGGTCAT+TGG	0.408066	4_4:-60655096	Msa0692250:CDS
AAGCAAGCACCTACTCCTAT+TGG	0.457882	4_4:-60654424	Msa0692250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGATTGCTATATCTCTA+AGG	-	chr4_4:60653437-60653456	Msa0692250:three_prime_UTR	30.0%
CTGACATAACTATTCTCATT+AGG	+	chr4_4:60653612-60653631	None:intergenic	30.0%
AATGAGAATAGTTATGTCAG+TGG	-	chr4_4:60653612-60653631	Msa0692250:CDS	30.0%
TATTAATCCTTGGATCCAAT+TGG	+	chr4_4:60653903-60653922	None:intergenic	30.0%
AAAGCTCTTCTATTAATCCT+TGG	+	chr4_4:60653913-60653932	None:intergenic	30.0%
ATGCAAGCTCATAGAATTTA+TGG	-	chr4_4:60653958-60653977	Msa0692250:intron	30.0%
ATAATGCTGTTAAGAATCAC+TGG	-	chr4_4:60654025-60654044	Msa0692250:intron	30.0%
TCAATCTGTTTACAGAAGAA+TGG	-	chr4_4:60654110-60654129	Msa0692250:intron	30.0%
AGGTTAATATAATAAGGTGG+TGG	+	chr4_4:60654198-60654217	None:intergenic	30.0%
GGAAGGTTAATATAATAAGG+TGG	+	chr4_4:60654201-60654220	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	60653372	60655407	60653372	ID=Msa0692250;Name=Msa0692250
chr4_4	mRNA	60653372	60655407	60653372	ID=Msa0692250-mRNA-1;Parent=Msa0692250;Name=Msa0692250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.33\|1\|1\|1\|3\|221\|427
chr4_4	exon	60653372	60653948	60653372	ID=Msa0692250-mRNA-1:exon:16680;Parent=Msa0692250-mRNA-1
chr4_4	exon	60654386	60654907	60654386	ID=Msa0692250-mRNA-1:exon:16679;Parent=Msa0692250-mRNA-1
chr4_4	exon	60655002	60655407	60655002	ID=Msa0692250-mRNA-1:exon:16678;Parent=Msa0692250-mRNA-1
chr4_4	CDS	60655002	60655407	60655002	ID=Msa0692250-mRNA-1:cds;Parent=Msa0692250-mRNA-1
chr4_4	CDS	60654386	60654907	60654386	ID=Msa0692250-mRNA-1:cds;Parent=Msa0692250-mRNA-1
chr4_4	CDS	60653593	60653948	60653593	ID=Msa0692250-mRNA-1:cds;Parent=Msa0692250-mRNA-1
chr4_4	three_prime_UTR	60653372	60653592	60653372	ID=Msa0692250-mRNA-1:three_prime_utr;Parent=Msa0692250-mRNA-1

Gene Sequence

>Msa0692250

ATGGGAATGGTCTATGCAAACATGGAGTCTTTATCACTAAACTATGCTGCTTCTTCTTCTTCATCTCAAGATTGCTATATCTCTAAGGAGGGTACTACTACTAATTGGTCTTTACCATTTATGAGGGAATGTTATATTGAAAGAAACTTTGAGGAAAACAACAACAGTGATGATGGTGGGGAAGGTAATGGTTCTGATTCTGGTGATGGTGTTGGAGAAAACAGTGAAAAAATTAACCCTAATGAGAATAGTTATGTCAGTGGTAAAGAGGTAGATACTGGTCACTCTAAACTTTGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTCAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAAAAGCTAGAAGGCAGATCAGGCAAGAGTTGTAGGCTAAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGATGAAGAGGAAGAAAGATTAATGCAAGCTCATAGAATTTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGAAGAACAGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCAAGTGCTTACAGAAGGAGGAGGCTGAATCAATCTGTTTACAGAAGAATGGAAGAGAATACAAGCTTTGTCTCTAGGGATATAGTCACAGCCACAGGAATGGAACCAGTACCACCACCACCTTATTATATTAACCTTCCAAATGGAACACTTGGCTATAACATGGCTAGTTTTCCATATTCATCTTTCCATGGTGTAATTGATGGTGGTGTTGAGTGTGGCTTAAATGGTTCAACTGCAGTCTCAAGTGACAAGCAAGCACCTACTCCTATTGGCTTGTTTGCTCAACAGTCACCACTTGATTTCTTTTCTGGAGGTAGAAGAAATGAGTATTATAGCCAAATGAGAAGCTGGGATAGGCCAAGTGATTTACATGATAATCAACCAACACCAACACCAACACCAACACCAACAGCAAGTGGTTTCTACCATGAATATCCACAATATATGATGCCAATGCAACAACAAAACAACAATTTTTACAGTTTCTCATCAAATATTTCCACCACAGCAGCAGCAACAACAACAACAGTACAGATATTAGGCAGTGAAGTTTCACTATCATCAGTGGTAGCAGCAGAAAATCACAGAGATCAAGTTCTGATGAGTAATCCCCCTCCTTCAGATGCAATTCCATTTATTGACTTCCTTGGAGTAGGAGCTACATGA

Protein sequence

>Msa0692250

MGMVYANMESLSLNYAASSSSSQDCYISKEGTTTNWSLPFMRECYIERNFEENNNSDDGGEGNGSDSGDGVGENSEKINPNENSYVSGKEVDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSDEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRMEENTSFVSRDIVTATGMEPVPPPPYYINLPNGTLGYNMASFPYSSFHGVIDGGVECGLNGSTAVSSDKQAPTPIGLFAQQSPLDFFSGGRRNEYYSQMRSWDRPSDLHDNQPTPTPTPTPTASGFYHEYPQYMMPMQQQNNNFYSFSSNISTTAAATTTTVQILGSEVSLSSVVAAENHRDQVLMSNPPPSDAIPFIDFLGVGAT*