AlfalfaGEDB | Msa0610490

M. sativa cultivar zhongmu-4 / Msa0610490

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0610490	XP_003607861.1	98.276	174	3	0	1	174	1	174	4.00e-125	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0610490	sp\|Q9SHE9\|LBD4_ARATH	74.713	174	40	2	1	174	1	170	2.67e-72	218

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0610490	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0610490	Msa0651140	0.941458	4.012769e-101	-8.615850e-47
Msa0610490	Msa0662180	0.909381	6.066558e-82	-8.615850e-47
Msa0610490	Msa0693110	0.913152	8.568824e-84	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0610490	MtrunA17_Chr4g0043421	98.276	174	3	0	1	174	1	174	3.68e-129	359
Msa0610490	MtrunA17_Chr2g0311601	82.400	125	20	1	1	125	1	123	8.54e-74	218
Msa0610490	MtrunA17_Chr5g0437571	73.874	111	29	0	11	121	2	112	1.17e-57	178
Msa0610490	MtrunA17_Chr3g0114061	61.224	147	48	3	5	146	2	144	3.51e-57	176
Msa0610490	MtrunA17_Chr3g0106101	65.000	120	42	0	11	130	3	122	3.88e-57	177
Msa0610490	MtrunA17_Chr4g0030001	66.667	111	36	1	14	123	23	133	1.18e-50	161
Msa0610490	MtrunA17_Chr6g0449641	55.797	138	57	2	14	151	8	141	2.12e-49	156
Msa0610490	MtrunA17_Chr1g0200201	67.290	107	35	0	16	122	73	179	8.56e-49	157
Msa0610490	MtrunA17_Chr3g0129071	62.162	111	42	0	14	124	46	156	9.94e-48	155
Msa0610490	MtrunA17_Chr5g0438091	62.727	110	41	0	5	114	29	138	1.45e-47	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0610490	AT1G31320.1	74.713	174	40	2	1	174	1	170	2.72e-73	218
Msa0610490	AT2G30130.1	75.229	109	27	0	13	121	6	114	1.05e-57	179
Msa0610490	AT1G16530.1	54.237	177	55	6	6	174	5	163	3.47e-57	177
Msa0610490	AT5G63090.4	64.286	112	40	0	14	125	10	121	1.41e-49	158
Msa0610490	AT5G63090.3	64.286	112	40	0	14	125	10	121	1.41e-49	158
Msa0610490	AT5G63090.2	64.286	112	40	0	14	125	10	121	1.41e-49	158
Msa0610490	AT5G63090.1	64.286	112	40	0	14	125	10	121	1.41e-49	158
Msa0610490	AT1G07900.1	63.636	110	40	0	14	123	32	141	2.55e-48	155
Msa0610490	AT2G28500.1	62.162	111	42	0	14	124	54	164	4.15e-47	154
Msa0610490	AT2G30340.1	57.377	122	50	1	11	130	48	169	4.75e-47	154

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Find 93 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCAAAGCAGCAGCA+TGG	0.618195	4_2:-58241995	None:intergenic
AAAATATATAAAATAGAACA+AGG	0.607211	4_2:+58247305	Msa0610490:three_prime_UTR
AAACAAAGAGAGTGTGGTGT+AGG	0.532357	4_2:-58242104	None:intergenic
AAACTAATCAAGCGGGCGAA+CGG	0.576829	4_2:-58247416	None:intergenic
AAATATATAAAATAGAACAA+GGG	0.693924	4_2:+58247306	Msa0610490:three_prime_UTR
AACTAGAACTCTAGAAGCAG+TGG	0.602973	4_2:+58247384	Msa0610490:three_prime_UTR
AACTCTAGAAGCAGTGGCGG+CGG	0.552581	4_2:+58247390	Msa0610490:three_prime_UTR
AACTTGTGAGGCTCATCAGC+AGG	0.445267	4_2:-58242364	None:intergenic
AAGCTGAGGCAGTGCACCTA+AGG	0.409283	4_2:+58247039	Msa0610490:CDS
AAGGTTATAGGTTTGGATTG+TGG	0.568703	4_2:+58247524	Msa0610490:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTATAGATTAGGGAGAA+GGG	+	chr4_2:58241953-58241972	Msa0610490:five_prime_UTR	30.0%
TGTCATATGAGATATTCTAG+TGG	-	chr4_2:58242183-58242202	None:intergenic	30.0%
GAATATGTAGAAGATAAGAG+TGG	-	chr4_2:58242452-58242471	None:intergenic	30.0%
ATATCAGTTAACTTAAGTGG+GGG	-	chr4_2:58242536-58242555	None:intergenic	30.0%
GATATCAGTTAACTTAAGTG+GGG	-	chr4_2:58242537-58242556	None:intergenic	30.0%
ATATTAGGACATGACATTTG+TGG	+	chr4_2:58242588-58242607	Msa0610490:intron	30.0%
AATAAAAATCACATGCGGTT+CGG	+	chr4_2:58243102-58243121	Msa0610490:intron	30.0%
TAAACCGCATATATTTGGAT+CGG	-	chr4_2:58243167-58243186	None:intergenic	30.0%
CGAATATATTTGGATGTGTT+TGG	-	chr4_2:58243575-58243594	None:intergenic	30.0%
CGCAAAAAACCGAATATATT+TGG	-	chr4_2:58243585-58243604	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	58241945	58247830	58241945	ID=Msa0610490;Name=Msa0610490
chr4_2	mRNA	58241945	58247830	58241945	ID=Msa0610490-mRNA-1;Parent=Msa0610490;Name=Msa0610490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=311\|1\|1\|1\|1\|1\|2\|601\|174
chr4_2	exon	58241945	58242438	58241945	ID=Msa0610490-mRNA-1:exon:15266;Parent=Msa0610490-mRNA-1
chr4_2	exon	58246888	58247830	58246888	ID=Msa0610490-mRNA-1:exon:15267;Parent=Msa0610490-mRNA-1
chr4_2	five_prime_UTR	58241945	58242255	58241945	ID=Msa0610490-mRNA-1:five_prime_utr;Parent=Msa0610490-mRNA-1
chr4_2	CDS	58242256	58242438	58242256	ID=Msa0610490-mRNA-1:cds;Parent=Msa0610490-mRNA-1
chr4_2	CDS	58246888	58247229	58246888	ID=Msa0610490-mRNA-1:cds;Parent=Msa0610490-mRNA-1
chr4_2	three_prime_UTR	58247230	58247830	58247230	ID=Msa0610490-mRNA-1:three_prime_utr;Parent=Msa0610490-mRNA-1

Gene Sequence

>Msa0610490

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA

Protein sequence

>Msa0610490

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW*