AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610490 MtrunA17_Chr4g0043421 98.276 174 3 0 1 174 1 174 3.68e-129 359
Msa0610490 MtrunA17_Chr2g0311601 82.400 125 20 1 1 125 1 123 8.54e-74 218
Msa0610490 MtrunA17_Chr5g0437571 73.874 111 29 0 11 121 2 112 1.17e-57 178
Msa0610490 MtrunA17_Chr3g0114061 61.224 147 48 3 5 146 2 144 3.51e-57 176
Msa0610490 MtrunA17_Chr3g0106101 65.000 120 42 0 11 130 3 122 3.88e-57 177
Msa0610490 MtrunA17_Chr4g0030001 66.667 111 36 1 14 123 23 133 1.18e-50 161
Msa0610490 MtrunA17_Chr6g0449641 55.797 138 57 2 14 151 8 141 2.12e-49 156
Msa0610490 MtrunA17_Chr1g0200201 67.290 107 35 0 16 122 73 179 8.56e-49 157
Msa0610490 MtrunA17_Chr3g0129071 62.162 111 42 0 14 124 46 156 9.94e-48 155
Msa0610490 MtrunA17_Chr5g0438091 62.727 110 41 0 5 114 29 138 1.45e-47 153
Msa0610490 MtrunA17_Chr3g0117121 65.714 105 36 0 14 118 9 113 2.34e-47 152
Msa0610490 MtrunA17_Chr4g0058651 65.385 104 36 0 14 117 10 113 3.78e-47 152
Msa0610490 MtrunA17_Chr7g0227511 64.078 103 37 0 14 116 10 112 4.80e-47 151
Msa0610490 MtrunA17_Chr6g0449651 61.905 105 40 0 14 118 66 170 1.22e-46 151
Msa0610490 MtrunA17_Chr5g0432451 62.097 124 46 1 14 137 42 164 5.03e-44 145
Msa0610490 MtrunA17_Chr3g0113891 62.376 101 38 0 12 112 11 111 2.70e-42 139
Msa0610490 MtrunA17_Chr3g0115431 60.784 102 40 0 13 114 7 108 6.58e-42 139
Msa0610490 MtrunA17_Chr5g0402611 63.366 101 37 0 14 114 7 107 9.62e-42 142
Msa0610490 MtrunA17_Chr5g0437401 60.396 101 40 0 12 112 8 108 1.84e-41 137
Msa0610490 MtrunA17_Chr7g0260971 56.481 108 46 1 11 117 10 117 1.23e-40 136
Msa0610490 MtrunA17_Chr8g0353981 65.347 101 35 0 14 114 6 106 1.68e-40 136
Msa0610490 MtrunA17_Chr3g0097221 60.396 101 40 0 14 114 6 106 5.20e-40 137
Msa0610490 MtrunA17_Chr1g0184281 52.137 117 55 1 1 116 1 117 4.52e-39 132
Msa0610490 MtrunA17_Chr8g0351721 54.867 113 48 2 2 113 7 117 5.83e-37 127
Msa0610490 MtrunA17_Chr7g0225111 51.402 107 52 0 14 120 4 110 1.31e-36 123
Msa0610490 MtrunA17_Chr8g0351701 56.566 99 42 1 15 112 23 121 1.06e-35 124
Msa0610490 MtrunA17_Chr5g0444351 53.535 99 46 0 16 114 6 104 1.14e-35 121
Msa0610490 MtrunA17_Chr7g0245871 56.000 100 43 1 15 113 27 126 8.01e-35 122
Msa0610490 MtrunA17_Chr6g0460951 49.074 108 54 1 14 120 39 146 1.68e-34 120
Msa0610490 MtrunA17_Chr7g0261031 52.830 106 49 1 11 115 4 109 1.57e-33 118
Msa0610490 MtrunA17_Chr1g0184271 52.941 102 47 1 15 115 12 113 9.45e-33 116
Msa0610490 MtrunA17_Chr5g0435641 50.495 101 49 1 11 110 3 103 1.26e-31 112
Msa0610490 MtrunA17_Chr7g0245861 51.923 104 44 3 1 101 1 101 2.55e-29 105
Msa0610490 MtrunA17_Chr8g0374591 42.982 114 65 0 15 128 8 121 5.34e-29 103
Msa0610490 MtrunA17_Chr8g0374601 40.152 132 74 2 15 141 26 157 6.64e-29 107
Msa0610490 MtrunA17_Chr4g0059901 48.000 100 52 0 9 108 4 103 9.69e-29 107
Msa0610490 MtrunA17_Chr6g0452691 35.821 134 77 3 16 141 10 142 1.05e-26 99.8
Msa0610490 MtrunA17_Chr6g0460941 47.727 88 45 1 15 101 7 94 2.08e-26 96.3
Msa0610490 MtrunA17_Chr6g0452671 34.783 138 87 2 16 153 12 146 2.10e-26 99.4
Msa0610490 MtrunA17_Chr8g0342351 40.385 104 62 0 16 119 13 116 2.51e-25 98.2
Msa0610490 MtrunA17_Chr2g0330201 38.462 104 64 0 11 114 15 118 5.19e-25 98.2
Msa0610490 MtrunA17_Chr6g0452661 47.500 80 41 1 16 94 10 89 1.08e-24 96.3
Msa0610490 MtrunA17_Chr8g0374581 46.602 103 54 1 15 116 8 110 1.16e-24 95.5
Msa0610490 MtrunA17_Chr4g0055441 43.617 94 48 2 16 104 3 96 2.84e-23 90.1
Msa0610490 MtrunA17_Chr2g0326051 60.938 64 25 0 60 123 5 68 4.61e-23 88.6
Msa0610490 MtrunA17_Chr5g0439111 33.974 156 83 5 16 154 10 162 5.60e-22 88.6
Msa0610490 MtrunA17_Chr4g0040831 37.000 100 63 0 11 110 11 110 8.10e-22 87.4
Msa0610490 MtrunA17_Chr2g0326041 65.385 52 18 0 10 61 28 79 3.86e-21 82.8
Msa0610490 MtrunA17_Chr4g0046201 38.372 86 53 0 16 101 7 92 7.57e-18 78.6
Msa0610490 MtrunA17_Chr2g0326821 30.392 102 67 3 15 114 2 101 4.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610490 AT1G31320.1 74.713 174 40 2 1 174 1 170 2.72e-73 218
Msa0610490 AT2G30130.1 75.229 109 27 0 13 121 6 114 1.05e-57 179
Msa0610490 AT1G16530.1 54.237 177 55 6 6 174 5 163 3.47e-57 177
Msa0610490 AT5G63090.4 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0610490 AT5G63090.3 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0610490 AT5G63090.2 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0610490 AT5G63090.1 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0610490 AT1G07900.1 63.636 110 40 0 14 123 32 141 2.55e-48 155
Msa0610490 AT2G28500.1 62.162 111 42 0 14 124 54 164 4.15e-47 154
Msa0610490 AT2G30340.1 57.377 122 50 1 11 130 48 169 4.75e-47 154
Msa0610490 AT2G30340.2 57.851 121 49 1 12 130 50 170 5.49e-47 154
Msa0610490 AT3G27650.1 64.356 101 36 0 14 114 38 138 4.96e-46 148
Msa0610490 AT2G40470.2 62.281 114 43 0 14 127 19 132 2.88e-45 148
Msa0610490 AT2G40470.1 62.281 114 43 0 14 127 44 157 7.33e-45 147
Msa0610490 AT2G23660.2 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0610490 AT2G23660.3 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0610490 AT2G23660.1 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0610490 AT5G66870.1 62.136 103 39 0 12 114 4 106 1.11e-41 142
Msa0610490 AT3G26660.1 54.867 113 49 1 16 126 6 118 7.82e-41 134
Msa0610490 AT3G26620.1 59.596 99 40 0 16 114 6 104 1.17e-40 134
Msa0610490 AT1G65620.1 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0610490 AT1G65620.4 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0610490 AT1G65620.3 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0610490 AT1G65620.5 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0610490 AT1G65620.2 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0610490 AT3G11090.1 53.226 124 51 1 12 135 8 124 8.20e-40 133
Msa0610490 AT2G42430.1 52.174 115 54 1 1 114 1 115 8.67e-39 132
Msa0610490 AT3G03760.1 54.630 108 48 1 14 120 50 157 2.36e-37 130
Msa0610490 AT2G42440.1 46.565 131 69 1 11 140 3 133 4.50e-36 125
Msa0610490 AT4G00220.1 56.731 104 44 1 18 120 20 123 4.93e-36 125
Msa0610490 AT2G31310.1 52.830 106 49 1 11 115 3 108 6.27e-36 124
Msa0610490 AT4G00210.1 48.344 151 73 3 11 157 7 156 1.03e-35 124
Msa0610490 AT2G45410.1 59.794 97 38 1 18 113 19 115 2.44e-33 117
Msa0610490 AT2G45420.1 52.885 104 48 1 18 120 40 143 6.66e-33 118
Msa0610490 AT5G06080.1 54.639 97 43 1 13 108 5 101 1.36e-32 115
Msa0610490 AT3G58190.1 50.980 102 49 1 15 115 11 112 1.09e-31 114
Msa0610490 AT3G50510.1 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0610490 AT3G50510.2 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0610490 AT1G72980.1 43.269 104 59 0 11 114 9 112 5.26e-28 104
Msa0610490 AT3G13850.1 42.453 106 61 0 16 121 37 142 1.77e-27 104
Msa0610490 AT3G47870.1 42.453 106 61 0 9 114 30 135 5.85e-27 103
Msa0610490 AT5G35900.1 42.424 99 57 0 16 114 6 104 1.69e-24 95.1
Msa0610490 AT1G06280.1 38.462 91 56 0 16 106 25 115 1.39e-19 82.0
Msa0610490 AT2G19820.1 39.583 96 57 1 14 108 11 106 2.05e-19 79.7
Msa0610490 AT5G15060.1 40.449 89 49 2 1 86 3 90 1.02e-17 75.9
Msa0610490 AT1G36000.1 28.814 118 84 0 11 128 5 122 1.42e-14 67.0
Msa0610490 AT4G22700.1 35.238 105 64 3 12 114 2 104 3.72e-14 67.4
Msa0610490 AT2G19510.1 28.571 98 70 0 11 108 5 102 1.50e-12 61.6
Msa0610490 AT3G27940.3 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0610490 AT3G27940.1 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0610490 AT3G27940.2 32.432 74 50 0 13 86 3 76 4.88e-11 58.5

Find 93 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4_2:+58247066 Msa0610490:CDS
GTTTGGTTATAGGTTTCTTA+TGG 0.279365 4_2:+58247435 Msa0610490:three_prime_UTR
TTCATTTGACATTGTGTTAA+GGG 0.294642 4_2:+58247500 Msa0610490:three_prime_UTR
CCTGCATTATATAATAATTA+AGG 0.294947 4_2:-58242022 None:intergenic
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4_2:+58242388 Msa0610490:CDS
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4_2:-58247022 None:intergenic
ATGATTGATGAGATATAATT+TGG 0.320770 4_2:+58247458 Msa0610490:three_prime_UTR
CGCTTGATTAGTTTGGTTAT+AGG 0.334957 4_2:+58247425 Msa0610490:three_prime_UTR
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4_2:-58247107 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4_2:-58247021 None:intergenic
TGTGTTAAGGGCAAGGTTAT+AGG 0.358958 4_2:+58247512 Msa0610490:three_prime_UTR
GTTCGCCCGCTTGATTAGTT+TGG 0.365439 4_2:+58247418 Msa0610490:three_prime_UTR
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4_2:-58247055 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4_2:+58242417 Msa0610490:CDS
TTTGGATTGTGGATTCTTCA+TGG 0.376459 4_2:+58247535 Msa0610490:three_prime_UTR
TTTCATTTGACATTGTGTTA+AGG 0.388396 4_2:+58247499 Msa0610490:three_prime_UTR
AGGAACATGGATGGATCTAT+TGG 0.397456 4_2:+58247631 Msa0610490:three_prime_UTR
TGTTGCTTCTTTGTAATGTT+GGG 0.400855 4_2:+58247680 Msa0610490:three_prime_UTR
TAAGGGCAAGGTTATAGGTT+TGG 0.401482 4_2:+58247517 Msa0610490:three_prime_UTR
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4_2:+58247039 Msa0610490:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4_2:-58242355 None:intergenic
AGAGAGTGTGGTGTAGGAAA+TGG 0.436476 4_2:-58242098 None:intergenic
TTGTTGCTTCTTTGTAATGT+TGG 0.438290 4_2:+58247679 Msa0610490:three_prime_UTR
TCCAAAATGATGATGCAGTT+TGG 0.439033 4_2:-58247067 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4_2:-58242364 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4_2:-58246894 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4_2:+58247107 Msa0610490:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4_2:-58247120 None:intergenic
TCTAGAAGCAGTGGCGGCGG+CGG 0.476603 4_2:+58247393 Msa0610490:three_prime_UTR
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4_2:+58246957 Msa0610490:CDS
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4_2:-58247115 None:intergenic
GTTTGTATAGATTAGGGAGA+AGG 0.505034 4_2:+58241952 Msa0610490:five_prime_UTR
ACTATGGTGGAGAGCAATGT+AGG 0.513474 4_2:-58242075 None:intergenic
CCTTAATTATTATATAATGC+AGG 0.515982 4_2:+58242022 Msa0610490:five_prime_UTR
AGATATTCTAGTGGAAGAAG+AGG 0.521031 4_2:-58242171 None:intergenic
TTGACATTGTGTTAAGGGCA+AGG 0.521941 4_2:+58247505 Msa0610490:three_prime_UTR
AAACAAAGAGAGTGTGGTGT+AGG 0.532357 4_2:-58242104 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4_2:-58247116 None:intergenic
AGAGCAATGTAGGGACTACT+AGG 0.535702 4_2:-58242065 None:intergenic
GAAGGGCCCACATGGAGTGG+TGG 0.540327 4_2:+58241970 Msa0610490:five_prime_UTR
TTGAATCACCATAGGCAGCT+TGG 0.540807 4_2:-58247199 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4_2:+58247007 Msa0610490:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4_2:+58246956 Msa0610490:CDS
AACTCTAGAAGCAGTGGCGG+CGG 0.552581 4_2:+58247390 Msa0610490:three_prime_UTR
TATATAAAATAGAACAAGGG+AGG 0.553832 4_2:+58247309 Msa0610490:three_prime_UTR
TTTGTATAGATTAGGGAGAA+GGG 0.555419 4_2:+58241953 Msa0610490:five_prime_UTR
TAATTAACGAACATGAAAGA+AGG 0.557964 4_2:+58242244 Msa0610490:exon
GCACATCAATCTGTTGCTGA+AGG 0.564578 4_2:-58246992 None:intergenic
AAGGTTATAGGTTTGGATTG+TGG 0.568703 4_2:+58247524 Msa0610490:three_prime_UTR
ATTAGGGAGAAGGGCCCACA+TGG 0.568783 4_2:+58241962 Msa0610490:five_prime_UTR
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4_2:+58247191 Msa0610490:CDS
GATATTCTAGTGGAAGAAGA+GGG 0.573147 4_2:-58242170 None:intergenic
AAACTAATCAAGCGGGCGAA+CGG 0.576829 4_2:-58247416 None:intergenic
TAAGTTACAAGGAACATGGA+TGG 0.577180 4_2:+58247622 Msa0610490:three_prime_UTR
CAATGTAGGGACTACTAGGA+AGG 0.577613 4_2:-58242061 None:intergenic
GTAGGGACTACTAGGAAGGA+AGG 0.577858 4_2:-58242057 None:intergenic
GGAGAAGGGCCCACATGGAG+TGG 0.583930 4_2:+58241967 Msa0610490:five_prime_UTR
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4_2:-58242293 None:intergenic
GTGGTGTAGGAAATGGACTA+TGG 0.586327 4_2:-58242091 None:intergenic
TTTGTAAGTTACAAGGAACA+TGG 0.587208 4_2:+58247618 Msa0610490:three_prime_UTR
CTATGGTGGAGAGCAATGTA+GGG 0.587811 4_2:-58242074 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4_2:-58242298 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4_2:+58246948 Msa0610490:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4_2:+58246889 Msa0610490:CDS
AACTAGAACTCTAGAAGCAG+TGG 0.602973 4_2:+58247384 Msa0610490:three_prime_UTR
CACATCAATCTGTTGCTGAA+GGG 0.604124 4_2:-58246991 None:intergenic
GGACTACTAGGAAGGAAGGA+AGG 0.605170 4_2:-58242053 None:intergenic
AAAATATATAAAATAGAACA+AGG 0.607211 4_2:+58247305 Msa0610490:three_prime_UTR
GACTTACCTGAGCATCAAAG+AGG 0.607217 4_2:+58246888 Msa0610490:CDS
ATATAAAATAGAACAAGGGA+GGG 0.609288 4_2:+58247310 Msa0610490:three_prime_UTR
TAGAACTCTAGAAGCAGTGG+CGG 0.612185 4_2:+58247387 Msa0610490:three_prime_UTR
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4_2:+58247040 Msa0610490:CDS
CATGGCACCACCACTCCATG+TGG 0.614429 4_2:-58241977 None:intergenic
CTATAACCAAACTAATCAAG+CGG 0.614673 4_2:-58247424 None:intergenic
AAAAGAGCAAAGCAGCAGCA+TGG 0.618195 4_2:-58241995 None:intergenic
TTAACGAACATGAAAGAAGG+TGG 0.619833 4_2:+58242247 Msa0610490:exon
TATAACCAAACTAATCAAGC+GGG 0.626817 4_2:-58247423 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4_2:-58242376 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4_2:+58246959 Msa0610490:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4_2:-58247207 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4_2:+58246958 Msa0610490:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4_2:+58246908 Msa0610490:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4_2:+58242250 Msa0610490:exon
GTGTAGGAAATGGACTATGG+TGG 0.639929 4_2:-58242088 None:intergenic
TGTCATATGAGATATTCTAG+TGG 0.642349 4_2:-58242180 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4_2:+58247025 Msa0610490:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4_2:+58242265 Msa0610490:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4_2:-58242363 None:intergenic
AGGAAGGAAGGAAGGAAGAG+CGG 0.659063 4_2:-58242045 None:intergenic
ATGGCACCACCACTCCATGT+GGG 0.666308 4_2:-58241976 None:intergenic
AAATATATAAAATAGAACAA+GGG 0.693924 4_2:+58247306 Msa0610490:three_prime_UTR
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4_2:+58246890 Msa0610490:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4_2:+58247204 Msa0610490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTACATTATAATATT+AGG + chr4_2:58242573-58242592 Msa0610490:intron 10.0%
!!! AAAAAATATATTTTGCATTT+TGG - chr4_2:58243212-58243231 None:intergenic 10.0%
!!! AGTATTAATATTTATTTTTG+CGG + chr4_2:58243472-58243491 Msa0610490:intron 10.0%
!! TTTAGAAAAGAAAAAAAAAA+AGG + chr4_2:58245366-58245385 Msa0610490:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG + chr4_2:58245496-58245515 Msa0610490:intron 10.0%
!! AAAATATATAAAATAGAACA+AGG + chr4_2:58247305-58247324 Msa0610490:three_prime_UTR 10.0%
!! AAATATATAAAATAGAACAA+GGG + chr4_2:58247306-58247325 Msa0610490:three_prime_UTR 10.0%
!! AAAAATGTTTGTATAGATTA+GGG + chr4_2:58241946-58241965 Msa0610490:five_prime_UTR 15.0%
!! TATGTATAATATTAGATAGA+TGG - chr4_2:58242801-58242820 None:intergenic 15.0%
!! TGTAATAAGTAGTTATAATT+AGG + chr4_2:58243025-58243044 Msa0610490:intron 15.0%
!! GTAATAAGTAGTTATAATTA+GGG + chr4_2:58243026-58243045 Msa0610490:intron 15.0%
!! TAATAAGTAGTTATAATTAG+GGG + chr4_2:58243027-58243046 Msa0610490:intron 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG + chr4_2:58243790-58243809 Msa0610490:intron 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG + chr4_2:58243791-58243810 Msa0610490:intron 15.0%
!!! TTTAAAATTTTGATACATTG+AGG + chr4_2:58243850-58243869 Msa0610490:intron 15.0%
!!! TTAAAATTTTGATACATTGA+GGG + chr4_2:58243851-58243870 Msa0610490:intron 15.0%
!!! ATATTTTCTTAATAAGCAAA+TGG - chr4_2:58244011-58244030 None:intergenic 15.0%
!! AGAAATAAATATGAACAATT+TGG - chr4_2:58244116-58244135 None:intergenic 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG + chr4_2:58244231-58244250 Msa0610490:intron 15.0%
!! CTGCAAAATTATTATTAATT+GGG - chr4_2:58244331-58244350 None:intergenic 15.0%
!! ACTGCAAAATTATTATTAAT+TGG - chr4_2:58244332-58244351 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG - chr4_2:58244359-58244378 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG - chr4_2:58244360-58244379 None:intergenic 15.0%
!! CAAAAAATATTAGAAGAATA+AGG - chr4_2:58245322-58245341 None:intergenic 15.0%
!!! TATTCTTCTAATATTTTTTG+AGG + chr4_2:58245322-58245341 Msa0610490:intron 15.0%
!!! CATTATTCATTCATATTTTA+GGG - chr4_2:58245981-58246000 None:intergenic 15.0%
!!! TCATTATTCATTCATATTTT+AGG - chr4_2:58245982-58246001 None:intergenic 15.0%
!!! TCTTTAATTCATTTTCTTAT+TGG + chr4_2:58246048-58246067 Msa0610490:intron 15.0%
!!! CTTTAATTCATTTTCTTATT+GGG + chr4_2:58246049-58246068 Msa0610490:intron 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG - chr4_2:58246217-58246236 None:intergenic 15.0%
!! GAAAAATGTTTGTATAGATT+AGG + chr4_2:58241945-58241964 Msa0610490:five_prime_UTR 20.0%
!! CCTGCATTATATAATAATTA+AGG - chr4_2:58242025-58242044 None:intergenic 20.0%
!! CCTTAATTATTATATAATGC+AGG + chr4_2:58242022-58242041 Msa0610490:five_prime_UTR 20.0%
!! TAATATAGGGTAGAAATAAA+GGG - chr4_2:58242477-58242496 None:intergenic 20.0%
!! ATAATATAGGGTAGAAATAA+AGG - chr4_2:58242478-58242497 None:intergenic 20.0%
!!! GAACAACTTGTTATAATATA+GGG - chr4_2:58242490-58242509 None:intergenic 20.0%
!!! TGAACAACTTGTTATAATAT+AGG - chr4_2:58242491-58242510 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - chr4_2:58243096-58243115 None:intergenic 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG + chr4_2:58243477-58243496 Msa0610490:intron 20.0%
!! TTAAGAGACTATTATAACTA+GGG - chr4_2:58243667-58243686 None:intergenic 20.0%
!! ATTAAGAGACTATTATAACT+AGG - chr4_2:58243668-58243687 None:intergenic 20.0%
!! TCTAGACATTTGATATATAT+GGG - chr4_2:58243888-58243907 None:intergenic 20.0%
!! ATCTAGACATTTGATATATA+TGG - chr4_2:58243889-58243908 None:intergenic 20.0%
!!! TTCACATAACATTGATTAAA+AGG + chr4_2:58244171-58244190 Msa0610490:intron 20.0%
!! AAAAAATGAGATAAGATAAG+AGG + chr4_2:58244776-58244795 Msa0610490:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG - chr4_2:58245027-58245046 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG - chr4_2:58245078-58245097 None:intergenic 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG - chr4_2:58245639-58245658 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG - chr4_2:58245640-58245659 None:intergenic 20.0%
!!! TACCTTTTCTAATTTTTCAA+GGG - chr4_2:58245837-58245856 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG + chr4_2:58245919-58245938 Msa0610490:intron 20.0%
!! AATATATGTCACATATTATG+TGG + chr4_2:58246355-58246374 Msa0610490:intron 20.0%
!! ATATATGTCACATATTATGT+GGG + chr4_2:58246356-58246375 Msa0610490:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG - chr4_2:58246804-58246823 None:intergenic 20.0%
!! ATGATTGATGAGATATAATT+TGG + chr4_2:58247458-58247477 Msa0610490:three_prime_UTR 20.0%
!! ATAAAAAAAAAAACTCCTTC+CGG - chr4_2:58247569-58247588 None:intergenic 20.0%
!!! TATATCTTTTGTAAGTTACA+AGG + chr4_2:58247611-58247630 Msa0610490:three_prime_UTR 20.0%
!!! ATACAATTAGTATCATTTTG+AGG + chr4_2:58247711-58247730 Msa0610490:three_prime_UTR 20.0%
! AAAAAAGTGAAAGCTAAAAG+GGG - chr4_2:58242133-58242152 None:intergenic 25.0%
! GAAAAAAGTGAAAGCTAAAA+GGG - chr4_2:58242134-58242153 None:intergenic 25.0%
! AGAAAAAAGTGAAAGCTAAA+AGG - chr4_2:58242135-58242154 None:intergenic 25.0%
! TAATTAACGAACATGAAAGA+AGG + chr4_2:58242244-58242263 Msa0610490:exon 25.0%
! TGATATCAGTTAACTTAAGT+GGG - chr4_2:58242538-58242557 None:intergenic 25.0%
! TTGATATCAGTTAACTTAAG+TGG - chr4_2:58242539-58242558 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG - chr4_2:58242749-58242768 None:intergenic 25.0%
! AAAATTAAAGCAAGAACAAG+AGG + chr4_2:58242888-58242907 Msa0610490:intron 25.0%
! AAAAAAAAAAGATAGGGAAG+TGG - chr4_2:58242961-58242980 None:intergenic 25.0%
! TCCAAAATAAAAATCACATG+CGG + chr4_2:58243097-58243116 Msa0610490:intron 25.0%
! CAAATTAAACCGCATATATT+TGG - chr4_2:58243172-58243191 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr4_2:58243170-58243189 Msa0610490:intron 25.0%
! CACAAACACAGTAAAATAAT+AGG + chr4_2:58243281-58243300 Msa0610490:intron 25.0%
! CAAACACATCCAAATATATT+CGG + chr4_2:58243573-58243592 Msa0610490:intron 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + chr4_2:58243583-58243602 Msa0610490:intron 25.0%
! TAAGAGACTATTATAACTAG+GGG - chr4_2:58243666-58243685 None:intergenic 25.0%
! CAATAAGCAAGTATATTGAA+AGG + chr4_2:58243752-58243771 Msa0610490:intron 25.0%
! CTAGACATTTGATATATATG+GGG - chr4_2:58243887-58243906 None:intergenic 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG + chr4_2:58243919-58243938 Msa0610490:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG + chr4_2:58244269-58244288 Msa0610490:intron 25.0%
! TTGATCTCCTTATAAAAATG+TGG + chr4_2:58244601-58244620 Msa0610490:intron 25.0%
!! CTCATTACCACATTTTTATA+AGG - chr4_2:58244611-58244630 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4_2:58244930-58244949 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4_2:58244929-58244948 Msa0610490:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_2:58244942-58244961 Msa0610490:intron 25.0%
!!! CATTTCTTTTAATTGACTAC+TGG + chr4_2:58245081-58245100 Msa0610490:intron 25.0%
!! TGAAGATACTTTTCTCAAAA+GGG + chr4_2:58245453-58245472 Msa0610490:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG - chr4_2:58245740-58245759 None:intergenic 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG + chr4_2:58245743-58245762 Msa0610490:intron 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG - chr4_2:58245747-58245766 None:intergenic 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG + chr4_2:58245746-58245765 Msa0610490:intron 25.0%
! AACCCTTGAAAAATTAGAAA+AGG + chr4_2:58245832-58245851 Msa0610490:intron 25.0%
!! CTACCTTTTCTAATTTTTCA+AGG - chr4_2:58245838-58245857 None:intergenic 25.0%
!! CAAATCAAAAAGTATGCATT+AGG + chr4_2:58246008-58246027 Msa0610490:intron 25.0%
! TCTTCATTTCACTTTCTATT+TGG + chr4_2:58246189-58246208 Msa0610490:intron 25.0%
!! GATGATTTTGTGTATATCTT+AGG - chr4_2:58246398-58246417 None:intergenic 25.0%
! AATTCAATGTAATTACGTGT+CGG + chr4_2:58246631-58246650 Msa0610490:intron 25.0%
!!! GATTCATTGATTTTTGATGA+TGG - chr4_2:58247137-58247156 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG + chr4_2:58247163-58247182 Msa0610490:CDS 25.0%
! GTCCATATCAAAAATATGTT+TGG - chr4_2:58247168-58247187 None:intergenic 25.0%
!!! ACATATTTTTGATATGGACA+TGG + chr4_2:58247169-58247188 Msa0610490:CDS 25.0%
!!! ATTTTGATCATAGTCTAGAT+AGG - chr4_2:58247290-58247309 None:intergenic 25.0%
! TATATAAAATAGAACAAGGG+AGG + chr4_2:58247309-58247328 Msa0610490:three_prime_UTR 25.0%
! ATATAAAATAGAACAAGGGA+GGG + chr4_2:58247310-58247329 Msa0610490:three_prime_UTR 25.0%
! TTTCATTTGACATTGTGTTA+AGG + chr4_2:58247499-58247518 Msa0610490:three_prime_UTR 25.0%
! TTCATTTGACATTGTGTTAA+GGG + chr4_2:58247500-58247519 Msa0610490:three_prime_UTR 25.0%
TTTGTATAGATTAGGGAGAA+GGG + chr4_2:58241953-58241972 Msa0610490:five_prime_UTR 30.0%
TGTCATATGAGATATTCTAG+TGG - chr4_2:58242183-58242202 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG - chr4_2:58242452-58242471 None:intergenic 30.0%
ATATCAGTTAACTTAAGTGG+GGG - chr4_2:58242536-58242555 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG - chr4_2:58242537-58242556 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG + chr4_2:58242588-58242607 Msa0610490:intron 30.0%
! ATCTATTTGATGGCTATGTA+GGG + chr4_2:58242920-58242939 Msa0610490:intron 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - chr4_2:58243101-58243120 None:intergenic 30.0%
AATAAAAATCACATGCGGTT+CGG + chr4_2:58243102-58243121 Msa0610490:intron 30.0%
TAAACCGCATATATTTGGAT+CGG - chr4_2:58243167-58243186 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr4_2:58243175-58243194 Msa0610490:intron 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + chr4_2:58243182-58243201 Msa0610490:intron 30.0%
CGAATATATTTGGATGTGTT+TGG - chr4_2:58243575-58243594 None:intergenic 30.0%
CGCAAAAAACCGAATATATT+TGG - chr4_2:58243585-58243604 None:intergenic 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + chr4_2:58243626-58243645 Msa0610490:intron 30.0%
!! AACTTTCTTAGTCTTGTTCA+GGG - chr4_2:58243916-58243935 None:intergenic 30.0%
!! AAACTTTCTTAGTCTTGTTC+AGG - chr4_2:58243917-58243936 None:intergenic 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG + chr4_2:58243922-58243941 Msa0610490:intron 30.0%
! CTACTGCACACAATTATTTT+GGG - chr4_2:58244040-58244059 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG - chr4_2:58244095-58244114 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG + chr4_2:58244268-58244287 Msa0610490:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_2:58244955-58244974 Msa0610490:intron 30.0%
TTAGAAGAATAAGGATGTGT+GGG - chr4_2:58245313-58245332 None:intergenic 30.0%
ATTAGAAGAATAAGGATGTG+TGG - chr4_2:58245314-58245333 None:intergenic 30.0%
TTTCCATTTGAGAAAAAGAC+AGG + chr4_2:58245425-58245444 Msa0610490:intron 30.0%
!!! CTTTTGAGAAAAGTATCTTC+AGG - chr4_2:58245454-58245473 None:intergenic 30.0%
! CTGAAGATACTTTTCTCAAA+AGG + chr4_2:58245452-58245471 Msa0610490:intron 30.0%
! GAAGATACTTTTCTCAAAAG+GGG + chr4_2:58245454-58245473 Msa0610490:intron 30.0%
! TCACATTGCAATTCTTTTTG+TGG + chr4_2:58245703-58245722 Msa0610490:intron 30.0%
TTACTTGGAAAAAACCATTC+TGG - chr4_2:58245806-58245825 None:intergenic 30.0%
TCAAGGGTTATTACTTTACT+TGG - chr4_2:58245821-58245840 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG + chr4_2:58245846-58245865 Msa0610490:intron 30.0%
TTCTTATTGGGATAACCAAT+AGG + chr4_2:58246061-58246080 Msa0610490:intron 30.0%
AAGGAAACATATTCAATGCT+TGG - chr4_2:58246309-58246328 None:intergenic 30.0%
TGGACTTTGACAATGAAATA+AGG - chr4_2:58246328-58246347 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG - chr4_2:58246348-58246367 None:intergenic 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG - chr4_2:58246829-58246848 None:intergenic 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG + chr4_2:58246866-58246885 Msa0610490:intron 30.0%
GTAAGTCCTGCAAATTAATA+AGG - chr4_2:58246875-58246894 None:intergenic 30.0%
!! TATTTTTGATATGGACATGG+TGG + chr4_2:58247172-58247191 Msa0610490:CDS 30.0%
TATAACCAAACTAATCAAGC+GGG - chr4_2:58247426-58247445 None:intergenic 30.0%
CTATAACCAAACTAATCAAG+CGG - chr4_2:58247427-58247446 None:intergenic 30.0%
GTTTGGTTATAGGTTTCTTA+TGG + chr4_2:58247435-58247454 Msa0610490:three_prime_UTR 30.0%
TTTGTAAGTTACAAGGAACA+TGG + chr4_2:58247618-58247637 Msa0610490:three_prime_UTR 30.0%
! TTGTTGCTTCTTTGTAATGT+TGG + chr4_2:58247679-58247698 Msa0610490:three_prime_UTR 30.0%
! TGTTGCTTCTTTGTAATGTT+GGG + chr4_2:58247680-58247699 Msa0610490:three_prime_UTR 30.0%
AGAACATCAAAAAGAACAGA+AGG - chr4_2:58247782-58247801 None:intergenic 30.0%
GTTTGTATAGATTAGGGAGA+AGG + chr4_2:58241952-58241971 Msa0610490:five_prime_UTR 35.0%
GATATTCTAGTGGAAGAAGA+GGG - chr4_2:58242173-58242192 None:intergenic 35.0%
AGATATTCTAGTGGAAGAAG+AGG - chr4_2:58242174-58242193 None:intergenic 35.0%
TTAACGAACATGAAAGAAGG+TGG + chr4_2:58242247-58242266 Msa0610490:exon 35.0%
TGAACATTAGCAAACTTGTG+AGG - chr4_2:58242379-58242398 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG + chr4_2:58242388-58242407 Msa0610490:CDS 35.0%
! GATCTATTTGATGGCTATGT+AGG + chr4_2:58242919-58242938 Msa0610490:intron 35.0%
!!! TTTATTTTTGCGGTTCGGTT+CGG + chr4_2:58243482-58243501 Msa0610490:intron 35.0%
AAAAACCGCTAAGATCGAAT+CGG - chr4_2:58243540-58243559 None:intergenic 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + chr4_2:58243590-58243609 Msa0610490:intron 35.0%
! TTTTGCGGTTTTCGGTTTTT+TGG + chr4_2:58243598-58243617 Msa0610490:intron 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + chr4_2:58243621-58243640 Msa0610490:intron 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + chr4_2:58243631-58243650 Msa0610490:intron 35.0%
! ACTTGCTTATTGTCACTTCA+GGG - chr4_2:58243744-58243763 None:intergenic 35.0%
! TACTTGCTTATTGTCACTTC+AGG - chr4_2:58243745-58243764 None:intergenic 35.0%
! CCTACTGCACACAATTATTT+TGG - chr4_2:58244041-58244060 None:intergenic 35.0%
CCAAAATAATTGTGTGCAGT+AGG + chr4_2:58244038-58244057 Msa0610490:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG + chr4_2:58244275-58244294 Msa0610490:intron 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG + chr4_2:58244276-58244295 Msa0610490:intron 35.0%
CTACTCAATTTCAGCTACAA+TGG + chr4_2:58244505-58244524 Msa0610490:intron 35.0%
! AATGATAATAGATGGTGTCG+GGG - chr4_2:58244533-58244552 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG - chr4_2:58244534-58244553 None:intergenic 35.0%
GCAATGATAATAGATGGTGT+CGG - chr4_2:58244535-58244554 None:intergenic 35.0%
TTCGCTGCAATGATAATAGA+TGG - chr4_2:58244541-58244560 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr4_2:58245182-58245201 Msa0610490:intron 35.0%
GTGACCAAACCAAAATTCTT+TGG + chr4_2:58245248-58245267 Msa0610490:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG - chr4_2:58245255-58245274 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG + chr4_2:58245254-58245273 Msa0610490:intron 35.0%
TAGAAGAATAAGGATGTGTG+GGG - chr4_2:58245312-58245331 None:intergenic 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG - chr4_2:58245431-58245450 None:intergenic 35.0%
! ATACTTTTCTCAAAAGGGGA+AGG + chr4_2:58245458-58245477 Msa0610490:intron 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr4_2:58245597-58245616 Msa0610490:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr4_2:58245598-58245617 Msa0610490:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG - chr4_2:58245798-58245817 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG - chr4_2:58245802-58245821 None:intergenic 35.0%
AGATGAGACAGACCTAATAT+TGG - chr4_2:58245934-58245953 None:intergenic 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG + chr4_2:58245936-58245955 Msa0610490:intron 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG - chr4_2:58246172-58246191 None:intergenic 35.0%
CAATATTAGACAACTTCACG+TGG - chr4_2:58246274-58246293 None:intergenic 35.0%
TACATATGTGGGCATTTATG+GGG - chr4_2:58246491-58246510 None:intergenic 35.0%
GTACATATGTGGGCATTTAT+GGG - chr4_2:58246492-58246511 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG + chr4_2:58246491-58246510 Msa0610490:intron 35.0%
TCATCTAACCGTACATATGT+GGG - chr4_2:58246502-58246521 None:intergenic 35.0%
TGTGTTTATAGGTCTTTGCA+GGG + chr4_2:58246686-58246705 Msa0610490:intron 35.0%
! TCCAAAATGATGATGCAGTT+TGG - chr4_2:58247070-58247089 None:intergenic 35.0%
!! CGCTTGATTAGTTTGGTTAT+AGG + chr4_2:58247425-58247444 Msa0610490:three_prime_UTR 35.0%
AAGGTTATAGGTTTGGATTG+TGG + chr4_2:58247524-58247543 Msa0610490:three_prime_UTR 35.0%
TTTGGATTGTGGATTCTTCA+TGG + chr4_2:58247535-58247554 Msa0610490:three_prime_UTR 35.0%
ATTCTTCATGGCAAAAAGAC+CGG + chr4_2:58247547-58247566 Msa0610490:three_prime_UTR 35.0%
TAAGTTACAAGGAACATGGA+TGG + chr4_2:58247622-58247641 Msa0610490:three_prime_UTR 35.0%
! AAACAAAGAGAGTGTGGTGT+AGG - chr4_2:58242107-58242126 None:intergenic 40.0%
GGGAAAAAACAAAGAGAGTG+TGG - chr4_2:58242113-58242132 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG + chr4_2:58242417-58242436 Msa0610490:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG + chr4_2:58242892-58242911 Msa0610490:intron 40.0%
TAAAGCAAGAACAAGAGGCA+GGG + chr4_2:58242893-58242912 Msa0610490:intron 40.0%
!! GTTATAATTAGGGGTGTTCG+CGG + chr4_2:58243036-58243055 Msa0610490:intron 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG - chr4_2:58243157-58243176 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG - chr4_2:58243162-58243181 None:intergenic 40.0%
CGAACCGATCCAAATATATG+CGG + chr4_2:58243160-58243179 Msa0610490:intron 40.0%
GCTAAGATCGAATCGGATTT+CGG - chr4_2:58243533-58243552 None:intergenic 40.0%
! GAAATCCGATTCGATCTTAG+CGG + chr4_2:58243532-58243551 Msa0610490:intron 40.0%
!! CGGTTTTCGGTTTTTTGGAT+CGG + chr4_2:58243603-58243622 Msa0610490:intron 40.0%
GTATTGTTCTGATTCACCTC+AGG + chr4_2:58243968-58243987 Msa0610490:intron 40.0%
CAACTGTCATAGTTATCCTG+AGG - chr4_2:58243987-58244006 None:intergenic 40.0%
TTGGGTAGAGGGAGTAAATT+AGG + chr4_2:58244287-58244306 Msa0610490:intron 40.0%
AGTTAACCAATTAACGCCAC+CGG - chr4_2:58244816-58244835 None:intergenic 40.0%
! ACACAAGATTTTCTCGGTCA+AGG - chr4_2:58245113-58245132 None:intergenic 40.0%
TTGACCGAGAAAATCTTGTG+TGG + chr4_2:58245112-58245131 Msa0610490:intron 40.0%
! AGGACCACACAAGATTTTCT+CGG - chr4_2:58245119-58245138 None:intergenic 40.0%
AAGGAAGAGAAACACTTGTG+TGG - chr4_2:58245281-58245300 None:intergenic 40.0%
AATAAGGATGTGTGGGGATA+TGG - chr4_2:58245306-58245325 None:intergenic 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr4_2:58245615-58245634 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr4_2:58245616-58245635 None:intergenic 40.0%
!! TTTTAGGGATCACATGCACA+TGG - chr4_2:58245966-58245985 None:intergenic 40.0%
CCACGTTTACAAACTCCTAT+TGG - chr4_2:58246079-58246098 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG + chr4_2:58246076-58246095 Msa0610490:intron 40.0%
ACTTTCTATTTGGCGCCATT+AGG + chr4_2:58246199-58246218 Msa0610490:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG - chr4_2:58246261-58246280 None:intergenic 40.0%
AGAAATGAATGGTGACAGGT+GGG - chr4_2:58246438-58246457 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG + chr4_2:58246445-58246464 Msa0610490:intron 40.0%
CGTACATATGTGGGCATTTA+TGG - chr4_2:58246493-58246512 None:intergenic 40.0%
GTCATCTAACCGTACATATG+TGG - chr4_2:58246503-58246522 None:intergenic 40.0%
! ATGTAATTACGTGTCGGTCT+CGG + chr4_2:58246637-58246656 Msa0610490:intron 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG + chr4_2:58246675-58246694 Msa0610490:intron 40.0%
CTGTGTTTATAGGTCTTTGC+AGG + chr4_2:58246685-58246704 Msa0610490:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG + chr4_2:58246889-58246908 Msa0610490:CDS 40.0%
CACATCAATCTGTTGCTGAA+GGG - chr4_2:58246994-58247013 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG + chr4_2:58247007-58247026 Msa0610490:CDS 40.0%
! GCCAAACTGCATCATCATTT+TGG + chr4_2:58247066-58247085 Msa0610490:CDS 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG + chr4_2:58247077-58247096 Msa0610490:CDS 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG + chr4_2:58247078-58247097 Msa0610490:CDS 40.0%
! TTTTGATATGGACATGGTGG+TGG + chr4_2:58247175-58247194 Msa0610490:CDS 40.0%
TCACCACATTGAATCACCAT+AGG - chr4_2:58247210-58247229 None:intergenic 40.0%
! AACTAGAACTCTAGAAGCAG+TGG + chr4_2:58247384-58247403 Msa0610490:three_prime_UTR 40.0%
TTGACATTGTGTTAAGGGCA+AGG + chr4_2:58247505-58247524 Msa0610490:three_prime_UTR 40.0%
TGTGTTAAGGGCAAGGTTAT+AGG + chr4_2:58247512-58247531 Msa0610490:three_prime_UTR 40.0%
TAAGGGCAAGGTTATAGGTT+TGG + chr4_2:58247517-58247536 Msa0610490:three_prime_UTR 40.0%
AGGAACATGGATGGATCTAT+TGG + chr4_2:58247631-58247650 Msa0610490:three_prime_UTR 40.0%
AAAAGAGCAAAGCAGCAGCA+TGG - chr4_2:58241998-58242017 None:intergenic 45.0%
CAATGTAGGGACTACTAGGA+AGG - chr4_2:58242064-58242083 None:intergenic 45.0%
AGAGCAATGTAGGGACTACT+AGG - chr4_2:58242068-58242087 None:intergenic 45.0%
! CTATGGTGGAGAGCAATGTA+GGG - chr4_2:58242077-58242096 None:intergenic 45.0%
! ACTATGGTGGAGAGCAATGT+AGG - chr4_2:58242078-58242097 None:intergenic 45.0%
!! GTGTAGGAAATGGACTATGG+TGG - chr4_2:58242091-58242110 None:intergenic 45.0%
!! GTGGTGTAGGAAATGGACTA+TGG - chr4_2:58242094-58242113 None:intergenic 45.0%
! AGAGAGTGTGGTGTAGGAAA+TGG - chr4_2:58242101-58242120 None:intergenic 45.0%
ACGAACATGAAAGAAGGTGG+AGG + chr4_2:58242250-58242269 Msa0610490:exon 45.0%
AAAGCAAGAACAAGAGGCAG+GGG + chr4_2:58242894-58242913 Msa0610490:intron 45.0%
AAGATAGGGAAGTGGCATGT+GGG - chr4_2:58242953-58242972 None:intergenic 45.0%
AAAGATAGGGAAGTGGCATG+TGG - chr4_2:58242954-58242973 None:intergenic 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + chr4_2:58243107-58243126 Msa0610490:intron 45.0%
!!! CGGTTTTTTGGATCGGTTTG+CGG + chr4_2:58243610-58243629 Msa0610490:intron 45.0%
AGAGGAATGCAAGCAAACTC+CGG + chr4_2:58244794-58244813 Msa0610490:intron 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr4_2:58245118-58245137 Msa0610490:intron 45.0%
AAATACCACTTGTGTGGACC+AGG - chr4_2:58245139-58245158 None:intergenic 45.0%
TGGTCCACACAAGTGGTATT+TGG + chr4_2:58245138-58245157 Msa0610490:intron 45.0%
GTGACCAAATACCACTTGTG+TGG - chr4_2:58245145-58245164 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr4_2:58245209-58245228 Msa0610490:intron 45.0%
! GGACCAGGACCAAAGAATTT+TGG - chr4_2:58245260-58245279 None:intergenic 45.0%
! AAGGGGAAGGCACAAGTTAA+TGG + chr4_2:58245471-58245490 Msa0610490:intron 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG - chr4_2:58245775-58245794 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG + chr4_2:58245789-58245808 Msa0610490:intron 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG - chr4_2:58245793-58245812 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG - chr4_2:58245881-58245900 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG - chr4_2:58245892-58245911 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG - chr4_2:58246110-58246129 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG - chr4_2:58246111-58246130 None:intergenic 45.0%
! CAGGTGGGGAGAATTTTGTA+TGG - chr4_2:58246423-58246442 None:intergenic 45.0%
GAAATGAATGGTGACAGGTG+GGG - chr4_2:58246437-58246456 None:intergenic 45.0%
GAGAAATGAATGGTGACAGG+TGG - chr4_2:58246439-58246458 None:intergenic 45.0%
GTGGAGAAATGAATGGTGAC+AGG - chr4_2:58246442-58246461 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG + chr4_2:58246444-58246463 Msa0610490:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG + chr4_2:58246446-58246465 Msa0610490:intron 45.0%
TATGTGGGCATTTATGGGGA+CGG - chr4_2:58246487-58246506 None:intergenic 45.0%
GACTTACCTGAGCATCAAAG+AGG + chr4_2:58246888-58246907 Msa0610490:CDS 45.0%
CTTACCTGAGCATCAAAGAG+GGG + chr4_2:58246890-58246909 Msa0610490:CDS 45.0%
GCACATCAATCTGTTGCTGA+AGG - chr4_2:58246995-58247014 None:intergenic 45.0%
AGCTTGTGCTACAGCCAATT+GGG - chr4_2:58247024-58247043 None:intergenic 45.0%
ATGGAGAGCCACTATAGGTT+GGG - chr4_2:58247118-58247137 None:intergenic 45.0%
!! TGATGATGGAGAGCCACTAT+AGG - chr4_2:58247123-58247142 None:intergenic 45.0%
TTGAATCACCATAGGCAGCT+TGG - chr4_2:58247202-58247221 None:intergenic 45.0%
CTGCCTATGGTGATTCAATG+TGG + chr4_2:58247204-58247223 Msa0610490:CDS 45.0%
! TAGAACTCTAGAAGCAGTGG+CGG + chr4_2:58247387-58247406 Msa0610490:three_prime_UTR 45.0%
AAACTAATCAAGCGGGCGAA+CGG - chr4_2:58247419-58247438 None:intergenic 45.0%
TTCATGGCAAAAAGACCGGA+AGG + chr4_2:58247551-58247570 Msa0610490:three_prime_UTR 45.0%
!! ATATAAAAAAAAAAAAGATA+GGG - chr4_2:58242967-58242986 None:intergenic 5.0%
!! TATATAAAAAAAAAAAAGAT+AGG - chr4_2:58242968-58242987 None:intergenic 5.0%
AGGAAGGAAGGAAGGAAGAG+CGG - chr4_2:58242048-58242067 None:intergenic 50.0%
GGACTACTAGGAAGGAAGGA+AGG - chr4_2:58242056-58242075 None:intergenic 50.0%
GTAGGGACTACTAGGAAGGA+AGG - chr4_2:58242060-58242079 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG + chr4_2:58242265-58242284 Msa0610490:CDS 50.0%
AGAAGCTTGCATGCAGCACA+AGG - chr4_2:58242301-58242320 None:intergenic 50.0%
ACTTGTGAGGCTCATCAGCA+GGG - chr4_2:58242366-58242385 None:intergenic 50.0%
AACTTGTGAGGCTCATCAGC+AGG - chr4_2:58242367-58242386 None:intergenic 50.0%
AGATAGGGAAGTGGCATGTG+GGG - chr4_2:58242952-58242971 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + chr4_2:58243059-58243078 Msa0610490:intron 50.0%
!!! TTTTGCGGTTCGGTTCGGTT+TGG + chr4_2:58243487-58243506 Msa0610490:intron 50.0%
CACTTGTCACAACGACACGT+TGG - chr4_2:58244572-58244591 None:intergenic 50.0%
CAAACTCCGGTGGCGTTAAT+TGG + chr4_2:58244807-58244826 Msa0610490:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr4_2:58245275-58245294 None:intergenic 50.0%
GATGTGTGGGGATATGGTCA+AGG - chr4_2:58245300-58245319 None:intergenic 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG - chr4_2:58245782-58245801 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG - chr4_2:58245788-58245807 None:intergenic 50.0%
GTATTGCCCCCCAAAAGTCA+GGG + chr4_2:58246098-58246117 Msa0610490:intron 50.0%
! TGCATGACCCTGACTTTTGG+GGG - chr4_2:58246108-58246127 None:intergenic 50.0%
! GTGCATGACCCTGACTTTTG+GGG - chr4_2:58246109-58246128 None:intergenic 50.0%
CCCCAAGGTGGAGAAATGAA+TGG - chr4_2:58246449-58246468 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG - chr4_2:58246461-58246480 None:intergenic 50.0%
GACATGGGAAAATCTCCCCA+AGG - chr4_2:58246464-58246483 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG - chr4_2:58246479-58246498 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG - chr4_2:58246486-58246505 None:intergenic 50.0%
TTAGATGACCCTGCAGGACA+GGG + chr4_2:58246514-58246533 Msa0610490:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG + chr4_2:58246654-58246673 Msa0610490:intron 50.0%
AGAGTGAGAGACCCTGTGTA+TGG + chr4_2:58246948-58246967 Msa0610490:CDS 50.0%
AGACCCTGTGTATGGTTGTG+TGG + chr4_2:58246956-58246975 Msa0610490:CDS 50.0%
GACCCTGTGTATGGTTGTGT+GGG + chr4_2:58246957-58246976 Msa0610490:CDS 50.0%
ACCCTGTGTATGGTTGTGTG+GGG + chr4_2:58246958-58246977 Msa0610490:CDS 50.0%
CAGCTTGTGCTACAGCCAAT+TGG - chr4_2:58247025-58247044 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG + chr4_2:58247025-58247044 Msa0610490:CDS 50.0%
!! CCACTATAGGTTGGGCTAGT+TGG - chr4_2:58247110-58247129 None:intergenic 50.0%
CCAACTAGCCCAACCTATAG+TGG + chr4_2:58247107-58247126 Msa0610490:CDS 50.0%
GATGGAGAGCCACTATAGGT+TGG - chr4_2:58247119-58247138 None:intergenic 50.0%
! GTTCGCCCGCTTGATTAGTT+TGG + chr4_2:58247418-58247437 Msa0610490:three_prime_UTR 50.0%
ATTAGGGAGAAGGGCCCACA+TGG + chr4_2:58241962-58241981 Msa0610490:five_prime_UTR 55.0%
ATGGCACCACCACTCCATGT+GGG - chr4_2:58241979-58241998 None:intergenic 55.0%
CTTGCATGCAGCACAAGGTG+AGG - chr4_2:58242296-58242315 None:intergenic 55.0%
GGCTCATCAGCAGGGAAGTA+AGG - chr4_2:58242358-58242377 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG + chr4_2:58242910-58242929 Msa0610490:intron 55.0%
!! AATTAGGGGTGTTCGCGGTG+CGG + chr4_2:58243041-58243060 Msa0610490:intron 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + chr4_2:58243112-58243131 Msa0610490:intron 55.0%
!! CGGTTCGGTTCGGTTTGGTT+CGG + chr4_2:58243492-58243511 Msa0610490:intron 55.0%
GGAATGCAAGCAAACTCCGG+TGG + chr4_2:58244797-58244816 Msa0610490:intron 55.0%
GGTATTGCCCCCCAAAAGTC+AGG + chr4_2:58246097-58246116 Msa0610490:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG - chr4_2:58246107-58246126 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG - chr4_2:58246480-58246499 None:intergenic 55.0%
GTACGGTTAGATGACCCTGC+AGG + chr4_2:58246508-58246527 Msa0610490:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG + chr4_2:58246513-58246532 Msa0610490:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG + chr4_2:58246515-58246534 Msa0610490:intron 55.0%
CATCATACCCCTGTCCTGCA+GGG - chr4_2:58246525-58246544 None:intergenic 55.0%
CGGTCTCGGACACTGAAAGT+TGG + chr4_2:58246651-58246670 Msa0610490:intron 55.0%
CGGACACTGAAAGTTGGAGG+AGG + chr4_2:58246657-58246676 Msa0610490:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG - chr4_2:58246897-58246916 None:intergenic 55.0%
AGGGGATGCAGTGAGTAGCA+TGG + chr4_2:58246908-58246927 Msa0610490:CDS 55.0%
CCCCCACACAACCATACACA+GGG - chr4_2:58246962-58246981 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG + chr4_2:58246959-58246978 Msa0610490:CDS 55.0%
AAGCTGAGGCAGTGCACCTA+AGG + chr4_2:58247039-58247058 Msa0610490:CDS 55.0%
AGCTGAGGCAGTGCACCTAA+GGG + chr4_2:58247040-58247059 Msa0610490:CDS 55.0%
ATGCAGTTTGGCGCACCCTT+AGG - chr4_2:58247058-58247077 None:intergenic 55.0%
! AACTCTAGAAGCAGTGGCGG+CGG + chr4_2:58247390-58247409 Msa0610490:three_prime_UTR 55.0%
CATGGCACCACCACTCCATG+TGG - chr4_2:58241980-58241999 None:intergenic 60.0%
GCAAGAACAAGAGGCAGGGG+CGG + chr4_2:58242897-58242916 Msa0610490:intron 60.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr4_2:58243051-58243070 Msa0610490:intron 60.0%
GTGGTCCTGGTCCACACAAG+TGG + chr4_2:58245131-58245150 Msa0610490:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG - chr4_2:58246526-58246545 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG - chr4_2:58246963-58246982 None:intergenic 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG + chr4_2:58247191-58247210 Msa0610490:CDS 60.0%
GGAGAAGGGCCCACATGGAG+TGG + chr4_2:58241967-58241986 Msa0610490:five_prime_UTR 65.0%
GAAGGGCCCACATGGAGTGG+TGG + chr4_2:58241970-58241989 Msa0610490:five_prime_UTR 65.0%
TCTAGAAGCAGTGGCGGCGG+CGG + chr4_2:58247393-58247412 Msa0610490:three_prime_UTR 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr4_2:58243046-58243065 Msa0610490:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58241945 58247830 58241945 ID=Msa0610490;Name=Msa0610490
chr4_2 mRNA 58241945 58247830 58241945 ID=Msa0610490-mRNA-1;Parent=Msa0610490;Name=Msa0610490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=311|1|1|1|1|1|2|601|174
chr4_2 exon 58241945 58242438 58241945 ID=Msa0610490-mRNA-1:exon:15266;Parent=Msa0610490-mRNA-1
chr4_2 exon 58246888 58247830 58246888 ID=Msa0610490-mRNA-1:exon:15267;Parent=Msa0610490-mRNA-1
chr4_2 five_prime_UTR 58241945 58242255 58241945 ID=Msa0610490-mRNA-1:five_prime_utr;Parent=Msa0610490-mRNA-1
chr4_2 CDS 58242256 58242438 58242256 ID=Msa0610490-mRNA-1:cds;Parent=Msa0610490-mRNA-1
chr4_2 CDS 58246888 58247229 58246888 ID=Msa0610490-mRNA-1:cds;Parent=Msa0610490-mRNA-1
chr4_2 three_prime_UTR 58247230 58247830 58247230 ID=Msa0610490-mRNA-1:three_prime_utr;Parent=Msa0610490-mRNA-1
Gene Sequence

>Msa0610490

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>Msa0610490

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW*