AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651140 MtrunA17_Chr4g0043421 98.276 174 3 0 1 174 1 174 3.68e-129 359
Msa0651140 MtrunA17_Chr2g0311601 82.400 125 20 1 1 125 1 123 8.54e-74 218
Msa0651140 MtrunA17_Chr5g0437571 73.874 111 29 0 11 121 2 112 1.17e-57 178
Msa0651140 MtrunA17_Chr3g0114061 61.224 147 48 3 5 146 2 144 3.51e-57 176
Msa0651140 MtrunA17_Chr3g0106101 65.000 120 42 0 11 130 3 122 3.88e-57 177
Msa0651140 MtrunA17_Chr4g0030001 66.667 111 36 1 14 123 23 133 1.18e-50 161
Msa0651140 MtrunA17_Chr6g0449641 55.797 138 57 2 14 151 8 141 2.12e-49 156
Msa0651140 MtrunA17_Chr1g0200201 67.290 107 35 0 16 122 73 179 8.56e-49 157
Msa0651140 MtrunA17_Chr3g0129071 62.162 111 42 0 14 124 46 156 9.94e-48 155
Msa0651140 MtrunA17_Chr5g0438091 62.727 110 41 0 5 114 29 138 1.45e-47 153
Msa0651140 MtrunA17_Chr3g0117121 65.714 105 36 0 14 118 9 113 2.34e-47 152
Msa0651140 MtrunA17_Chr4g0058651 65.385 104 36 0 14 117 10 113 3.78e-47 152
Msa0651140 MtrunA17_Chr7g0227511 64.078 103 37 0 14 116 10 112 4.80e-47 151
Msa0651140 MtrunA17_Chr6g0449651 61.905 105 40 0 14 118 66 170 1.22e-46 151
Msa0651140 MtrunA17_Chr5g0432451 62.097 124 46 1 14 137 42 164 5.03e-44 145
Msa0651140 MtrunA17_Chr3g0113891 62.376 101 38 0 12 112 11 111 2.70e-42 139
Msa0651140 MtrunA17_Chr3g0115431 60.784 102 40 0 13 114 7 108 6.58e-42 139
Msa0651140 MtrunA17_Chr5g0402611 63.366 101 37 0 14 114 7 107 9.62e-42 142
Msa0651140 MtrunA17_Chr5g0437401 60.396 101 40 0 12 112 8 108 1.84e-41 137
Msa0651140 MtrunA17_Chr7g0260971 56.481 108 46 1 11 117 10 117 1.23e-40 136
Msa0651140 MtrunA17_Chr8g0353981 65.347 101 35 0 14 114 6 106 1.68e-40 136
Msa0651140 MtrunA17_Chr3g0097221 60.396 101 40 0 14 114 6 106 5.20e-40 137
Msa0651140 MtrunA17_Chr1g0184281 52.137 117 55 1 1 116 1 117 4.52e-39 132
Msa0651140 MtrunA17_Chr8g0351721 54.867 113 48 2 2 113 7 117 5.83e-37 127
Msa0651140 MtrunA17_Chr7g0225111 51.402 107 52 0 14 120 4 110 1.31e-36 123
Msa0651140 MtrunA17_Chr8g0351701 56.566 99 42 1 15 112 23 121 1.06e-35 124
Msa0651140 MtrunA17_Chr5g0444351 53.535 99 46 0 16 114 6 104 1.14e-35 121
Msa0651140 MtrunA17_Chr7g0245871 56.000 100 43 1 15 113 27 126 8.01e-35 122
Msa0651140 MtrunA17_Chr6g0460951 49.074 108 54 1 14 120 39 146 1.68e-34 120
Msa0651140 MtrunA17_Chr7g0261031 52.830 106 49 1 11 115 4 109 1.57e-33 118
Msa0651140 MtrunA17_Chr1g0184271 52.941 102 47 1 15 115 12 113 9.45e-33 116
Msa0651140 MtrunA17_Chr5g0435641 50.495 101 49 1 11 110 3 103 1.26e-31 112
Msa0651140 MtrunA17_Chr7g0245861 51.923 104 44 3 1 101 1 101 2.55e-29 105
Msa0651140 MtrunA17_Chr8g0374591 42.982 114 65 0 15 128 8 121 5.34e-29 103
Msa0651140 MtrunA17_Chr8g0374601 40.152 132 74 2 15 141 26 157 6.64e-29 107
Msa0651140 MtrunA17_Chr4g0059901 48.000 100 52 0 9 108 4 103 9.69e-29 107
Msa0651140 MtrunA17_Chr6g0452691 35.821 134 77 3 16 141 10 142 1.05e-26 99.8
Msa0651140 MtrunA17_Chr6g0460941 47.727 88 45 1 15 101 7 94 2.08e-26 96.3
Msa0651140 MtrunA17_Chr6g0452671 34.783 138 87 2 16 153 12 146 2.10e-26 99.4
Msa0651140 MtrunA17_Chr8g0342351 40.385 104 62 0 16 119 13 116 2.51e-25 98.2
Msa0651140 MtrunA17_Chr2g0330201 38.462 104 64 0 11 114 15 118 5.19e-25 98.2
Msa0651140 MtrunA17_Chr6g0452661 47.500 80 41 1 16 94 10 89 1.08e-24 96.3
Msa0651140 MtrunA17_Chr8g0374581 46.602 103 54 1 15 116 8 110 1.16e-24 95.5
Msa0651140 MtrunA17_Chr4g0055441 43.617 94 48 2 16 104 3 96 2.84e-23 90.1
Msa0651140 MtrunA17_Chr2g0326051 60.938 64 25 0 60 123 5 68 4.61e-23 88.6
Msa0651140 MtrunA17_Chr5g0439111 33.974 156 83 5 16 154 10 162 5.60e-22 88.6
Msa0651140 MtrunA17_Chr4g0040831 37.000 100 63 0 11 110 11 110 8.10e-22 87.4
Msa0651140 MtrunA17_Chr2g0326041 65.385 52 18 0 10 61 28 79 3.86e-21 82.8
Msa0651140 MtrunA17_Chr4g0046201 38.372 86 53 0 16 101 7 92 7.57e-18 78.6
Msa0651140 MtrunA17_Chr2g0326821 30.392 102 67 3 15 114 2 101 4.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651140 AT1G31320.1 74.713 174 40 2 1 174 1 170 2.72e-73 218
Msa0651140 AT2G30130.1 75.229 109 27 0 13 121 6 114 1.05e-57 179
Msa0651140 AT1G16530.1 54.237 177 55 6 6 174 5 163 3.47e-57 177
Msa0651140 AT5G63090.4 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0651140 AT5G63090.3 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0651140 AT5G63090.2 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0651140 AT5G63090.1 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0651140 AT1G07900.1 63.636 110 40 0 14 123 32 141 2.55e-48 155
Msa0651140 AT2G28500.1 62.162 111 42 0 14 124 54 164 4.15e-47 154
Msa0651140 AT2G30340.1 57.377 122 50 1 11 130 48 169 4.75e-47 154
Msa0651140 AT2G30340.2 57.851 121 49 1 12 130 50 170 5.49e-47 154
Msa0651140 AT3G27650.1 64.356 101 36 0 14 114 38 138 4.96e-46 148
Msa0651140 AT2G40470.2 62.281 114 43 0 14 127 19 132 2.88e-45 148
Msa0651140 AT2G40470.1 62.281 114 43 0 14 127 44 157 7.33e-45 147
Msa0651140 AT2G23660.2 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0651140 AT2G23660.3 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0651140 AT2G23660.1 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0651140 AT5G66870.1 62.136 103 39 0 12 114 4 106 1.11e-41 142
Msa0651140 AT3G26660.1 54.867 113 49 1 16 126 6 118 7.82e-41 134
Msa0651140 AT3G26620.1 59.596 99 40 0 16 114 6 104 1.17e-40 134
Msa0651140 AT1G65620.1 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0651140 AT1G65620.4 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0651140 AT1G65620.3 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0651140 AT1G65620.5 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0651140 AT1G65620.2 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0651140 AT3G11090.1 53.226 124 51 1 12 135 8 124 8.20e-40 133
Msa0651140 AT2G42430.1 52.174 115 54 1 1 114 1 115 8.67e-39 132
Msa0651140 AT3G03760.1 54.630 108 48 1 14 120 50 157 2.36e-37 130
Msa0651140 AT2G42440.1 46.565 131 69 1 11 140 3 133 4.50e-36 125
Msa0651140 AT4G00220.1 56.731 104 44 1 18 120 20 123 4.93e-36 125
Msa0651140 AT2G31310.1 52.830 106 49 1 11 115 3 108 6.27e-36 124
Msa0651140 AT4G00210.1 48.344 151 73 3 11 157 7 156 1.03e-35 124
Msa0651140 AT2G45410.1 59.794 97 38 1 18 113 19 115 2.44e-33 117
Msa0651140 AT2G45420.1 52.885 104 48 1 18 120 40 143 6.66e-33 118
Msa0651140 AT5G06080.1 54.639 97 43 1 13 108 5 101 1.36e-32 115
Msa0651140 AT3G58190.1 50.980 102 49 1 15 115 11 112 1.09e-31 114
Msa0651140 AT3G50510.1 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0651140 AT3G50510.2 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0651140 AT1G72980.1 43.269 104 59 0 11 114 9 112 5.26e-28 104
Msa0651140 AT3G13850.1 42.453 106 61 0 16 121 37 142 1.77e-27 104
Msa0651140 AT3G47870.1 42.453 106 61 0 9 114 30 135 5.85e-27 103
Msa0651140 AT5G35900.1 42.424 99 57 0 16 114 6 104 1.69e-24 95.1
Msa0651140 AT1G06280.1 38.462 91 56 0 16 106 25 115 1.39e-19 82.0
Msa0651140 AT2G19820.1 39.583 96 57 1 14 108 11 106 2.05e-19 79.7
Msa0651140 AT5G15060.1 40.449 89 49 2 1 86 3 90 1.02e-17 75.9
Msa0651140 AT1G36000.1 28.814 118 84 0 11 128 5 122 1.42e-14 67.0
Msa0651140 AT4G22700.1 35.238 105 64 3 12 114 2 104 3.72e-14 67.4
Msa0651140 AT2G19510.1 28.571 98 70 0 11 108 5 102 1.50e-12 61.6
Msa0651140 AT3G27940.3 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0651140 AT3G27940.1 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0651140 AT3G27940.2 32.432 74 50 0 13 86 3 76 4.88e-11 58.5

Find 93 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4_3:+58502107 Msa0651140:CDS
GTTTGGTTATAGGTTTCTTA+TGG 0.279365 4_3:+58502476 Msa0651140:three_prime_UTR
TTCATTTGACATTGTGTTAA+GGG 0.294642 4_3:+58502551 Msa0651140:three_prime_UTR
CCTGCATTATATAATAATTA+AGG 0.294947 4_3:-58497250 None:intergenic
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4_3:+58497616 Msa0651140:CDS
TGCTGCTTCTTTGTAATGTT+GGG 0.310273 4_3:+58502738 Msa0651140:three_prime_UTR
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4_3:-58502063 None:intergenic
ATGATTGATGAGATATAATT+TGG 0.320770 4_3:+58502499 Msa0651140:three_prime_UTR
CGCTTGATTAGTTTGGTTAT+AGG 0.334957 4_3:+58502466 Msa0651140:three_prime_UTR
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4_3:-58502148 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4_3:-58502062 None:intergenic
TGTGTTAAGGGCAAGGTTAT+AGG 0.358958 4_3:+58502563 Msa0651140:three_prime_UTR
GTTCGCCCGCTTGATTAGTT+TGG 0.365439 4_3:+58502459 Msa0651140:three_prime_UTR
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4_3:-58502096 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4_3:+58497645 Msa0651140:CDS
TTTGGATTGTGGATTCTTCA+TGG 0.376459 4_3:+58502586 Msa0651140:three_prime_UTR
TTTCATTTGACATTGTGTTA+AGG 0.388396 4_3:+58502550 Msa0651140:three_prime_UTR
TTGCTGCTTCTTTGTAATGT+TGG 0.390235 4_3:+58502737 Msa0651140:three_prime_UTR
AGGAACATGGATGGATCTAT+TGG 0.397456 4_3:+58502689 Msa0651140:three_prime_UTR
TAAGGGCAAGGTTATAGGTT+TGG 0.401482 4_3:+58502568 Msa0651140:three_prime_UTR
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4_3:+58502080 Msa0651140:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4_3:-58497583 None:intergenic
TCCAAAATGATGATGCAGTT+TGG 0.439033 4_3:-58502108 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4_3:-58497592 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4_3:-58501935 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4_3:+58502148 Msa0651140:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4_3:-58502161 None:intergenic
AGAGCAGTGTAGGGACTACT+AGG 0.474950 4_3:-58497293 None:intergenic
TCTAGAAGCAGTGGCGGCGG+CGG 0.476603 4_3:+58502434 Msa0651140:three_prime_UTR
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4_3:+58501998 Msa0651140:CDS
AAACAAAGAGTGTGTGGTGT+AGG 0.502768 4_3:-58497332 None:intergenic
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4_3:-58502156 None:intergenic
GTTTGTATAGATTAGGGAGA+AGG 0.505034 4_3:+58497180 Msa0651140:five_prime_UTR
CCTTAATTATTATATAATGC+AGG 0.515982 4_3:+58497250 Msa0651140:five_prime_UTR
AGATATTCTAGTGGAAGAAG+AGG 0.521031 4_3:-58497399 None:intergenic
TTGACATTGTGTTAAGGGCA+AGG 0.521941 4_3:+58502556 Msa0651140:three_prime_UTR
AGAGTGTGTGGTGTAGGAAA+TGG 0.525788 4_3:-58497326 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4_3:-58502157 None:intergenic
GAAGGGCCCACATGGAGTGG+TGG 0.540327 4_3:+58497198 Msa0651140:five_prime_UTR
TTGAATCACCATAGGCAGCT+TGG 0.540807 4_3:-58502240 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4_3:+58502048 Msa0651140:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4_3:+58501997 Msa0651140:CDS
AACTCTAGAAGCAGTGGCGG+CGG 0.552581 4_3:+58502431 Msa0651140:three_prime_UTR
TATATAAAATAGAACAAGGG+AGG 0.553832 4_3:+58502350 Msa0651140:three_prime_UTR
TTTGTATAGATTAGGGAGAA+GGG 0.555419 4_3:+58497181 Msa0651140:five_prime_UTR
TAATTAACGAACATGAAAGA+AGG 0.557964 4_3:+58497472 Msa0651140:exon
GCACATCAATCTGTTGCTGA+AGG 0.564578 4_3:-58502033 None:intergenic
GTAGGGACTACTAGGAAGGA+AGG 0.564829 4_3:-58497285 None:intergenic
AAGGTTATAGGTTTGGATTG+TGG 0.568703 4_3:+58502575 Msa0651140:three_prime_UTR
ATTAGGGAGAAGGGCCCACA+TGG 0.568783 4_3:+58497190 Msa0651140:five_prime_UTR
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4_3:+58502232 Msa0651140:CDS
GATATTCTAGTGGAAGAAGA+GGG 0.573147 4_3:-58497398 None:intergenic
AAACTAATCAAGCGGGCGAA+CGG 0.576829 4_3:-58502457 None:intergenic
TAAGTTACAAGGAACATGGA+TGG 0.577180 4_3:+58502680 Msa0651140:three_prime_UTR
GGAGAAGGGCCCACATGGAG+TGG 0.583930 4_3:+58497195 Msa0651140:five_prime_UTR
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4_3:-58497521 None:intergenic
TTTGTAAGTTACAAGGAACA+TGG 0.587208 4_3:+58502676 Msa0651140:three_prime_UTR
ACTACGGTGGAGAGCAGTGT+AGG 0.589453 4_3:-58497303 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4_3:-58497526 None:intergenic
CAGTGTAGGGACTACTAGGA+AGG 0.593432 4_3:-58497289 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4_3:+58501989 Msa0651140:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4_3:+58501930 Msa0651140:CDS
AACTAGAACTCTAGAAGCAG+TGG 0.602973 4_3:+58502425 Msa0651140:three_prime_UTR
CTACGGTGGAGAGCAGTGTA+GGG 0.602974 4_3:-58497302 None:intergenic
CACATCAATCTGTTGCTGAA+GGG 0.604124 4_3:-58502032 None:intergenic
GGACTACTAGGAAGGAAGGA+AGG 0.605170 4_3:-58497281 None:intergenic
AAAATATATAAAATAGAACA+AGG 0.607211 4_3:+58502346 Msa0651140:three_prime_UTR
GACTTACCTGAGCATCAAAG+AGG 0.607217 4_3:+58501929 Msa0651140:CDS
ATATAAAATAGAACAAGGGA+GGG 0.609288 4_3:+58502351 Msa0651140:three_prime_UTR
TAGAACTCTAGAAGCAGTGG+CGG 0.612185 4_3:+58502428 Msa0651140:three_prime_UTR
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4_3:+58502081 Msa0651140:CDS
CATGGCACCACCACTCCATG+TGG 0.614429 4_3:-58497205 None:intergenic
CTATAACCAAACTAATCAAG+CGG 0.614673 4_3:-58502465 None:intergenic
AAAAGAGCAAAGCAGCAGCA+TGG 0.618195 4_3:-58497223 None:intergenic
TTAACGAACATGAAAGAAGG+TGG 0.619833 4_3:+58497475 Msa0651140:exon
TATAACCAAACTAATCAAGC+GGG 0.626817 4_3:-58502464 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4_3:-58497604 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4_3:+58502000 Msa0651140:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4_3:-58502248 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4_3:+58501999 Msa0651140:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4_3:+58501949 Msa0651140:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4_3:+58497478 Msa0651140:exon
TGTCATATGAGATATTCTAG+TGG 0.642349 4_3:-58497408 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4_3:+58502066 Msa0651140:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4_3:+58497493 Msa0651140:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4_3:-58497591 None:intergenic
AGGAAGGAAGGAAGGAAGAG+CGG 0.659063 4_3:-58497273 None:intergenic
ATGGCACCACCACTCCATGT+GGG 0.666308 4_3:-58497204 None:intergenic
GTGGTGTAGGAAATGGACTA+CGG 0.683993 4_3:-58497319 None:intergenic
AAATATATAAAATAGAACAA+GGG 0.693924 4_3:+58502347 Msa0651140:three_prime_UTR
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4_3:+58501931 Msa0651140:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4_3:+58502245 Msa0651140:CDS
GTGTAGGAAATGGACTACGG+TGG 0.749162 4_3:-58497316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATATATATTAAAAAA+AGG + chr4_3:58499353-58499372 Msa0651140:intron 0.0%
!!! TTTTATATATATTAAAAAAA+GGG + chr4_3:58499354-58499373 Msa0651140:intron 0.0%
!! ATATACTACATTATAATATT+AGG + chr4_3:58497801-58497820 Msa0651140:intron 10.0%
!!! TTTTAGAAAAGAAAAAAAAA+AGG + chr4_3:58500406-58500425 Msa0651140:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG + chr4_3:58500538-58500557 Msa0651140:intron 10.0%
!!! TTAAAAAACATTTTTTCTTT+TGG + chr4_3:58500616-58500635 Msa0651140:intron 10.0%
!! AAAATATATAAAATAGAACA+AGG + chr4_3:58502346-58502365 Msa0651140:three_prime_UTR 10.0%
!! AAATATATAAAATAGAACAA+GGG + chr4_3:58502347-58502366 Msa0651140:three_prime_UTR 10.0%
!! AAAAATGTTTGTATAGATTA+GGG + chr4_3:58497174-58497193 Msa0651140:five_prime_UTR 15.0%
!! TATGTATAATATTAGATAGA+TGG - chr4_3:58498029-58498048 None:intergenic 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG + chr4_3:58498381-58498400 Msa0651140:intron 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG + chr4_3:58498382-58498401 Msa0651140:intron 15.0%
!!! TTTAAAATTTTGATACATTG+AGG + chr4_3:58498441-58498460 Msa0651140:intron 15.0%
!!! TTAAAATTTTGATACATTGA+GGG + chr4_3:58498442-58498461 Msa0651140:intron 15.0%
!! AGAAATAAATATGAACAATT+TGG - chr4_3:58498710-58498729 None:intergenic 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG + chr4_3:58498825-58498844 Msa0651140:intron 15.0%
!! CTGCAAAATTATTATTAATT+GGG - chr4_3:58498925-58498944 None:intergenic 15.0%
!! ACTGCAAAATTATTATTAAT+TGG - chr4_3:58498926-58498945 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG - chr4_3:58498953-58498972 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG - chr4_3:58498954-58498973 None:intergenic 15.0%
!!! ATCTTATCTCATTTTTTTAA+GGG - chr4_3:58499652-58499671 None:intergenic 15.0%
!!! TATCTTATCTCATTTTTTTA+AGG - chr4_3:58499653-58499672 None:intergenic 15.0%
!! CAAAAAATATTAGAAGAATA+AGG - chr4_3:58500363-58500382 None:intergenic 15.0%
!!! TATTCTTCTAATATTTTTTG+AGG + chr4_3:58500363-58500382 Msa0651140:intron 15.0%
!!! CATTATTCATTCATATTTTA+GGG - chr4_3:58501022-58501041 None:intergenic 15.0%
!!! TCATTATTCATTCATATTTT+AGG - chr4_3:58501023-58501042 None:intergenic 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG - chr4_3:58501258-58501277 None:intergenic 15.0%
!! GAAAAATGTTTGTATAGATT+AGG + chr4_3:58497173-58497192 Msa0651140:five_prime_UTR 20.0%
!! CCTGCATTATATAATAATTA+AGG - chr4_3:58497253-58497272 None:intergenic 20.0%
!! CCTTAATTATTATATAATGC+AGG + chr4_3:58497250-58497269 Msa0651140:five_prime_UTR 20.0%
!! TAATATAGGGTAGAAATAAA+GGG - chr4_3:58497705-58497724 None:intergenic 20.0%
!! ATAATATAGGGTAGAAATAA+AGG - chr4_3:58497706-58497725 None:intergenic 20.0%
!!! GAACAACTTGTTATAATATA+GGG - chr4_3:58497718-58497737 None:intergenic 20.0%
!!! TGAACAACTTGTTATAATAT+AGG - chr4_3:58497719-58497738 None:intergenic 20.0%
!! TCTAGACATTTGATATATAT+GGG - chr4_3:58498479-58498498 None:intergenic 20.0%
!! ATCTAGACATTTGATATATA+TGG - chr4_3:58498480-58498499 None:intergenic 20.0%
!!! TTTTCTTAATAAGCATGAAA+TGG - chr4_3:58498602-58498621 None:intergenic 20.0%
!!! TTCACATAACATTGATTAAA+AGG + chr4_3:58498765-58498784 Msa0651140:intron 20.0%
!! AAAAAATGAGATAAGATAAG+AGG + chr4_3:58499655-58499674 Msa0651140:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG - chr4_3:58500068-58500087 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG - chr4_3:58500119-58500138 None:intergenic 20.0%
!!! CATTTCTTTTAATTGACTAT+TGG + chr4_3:58500122-58500141 Msa0651140:intron 20.0%
!!! AAGATACTTTTCTCAAAAAA+GGG + chr4_3:58500495-58500514 Msa0651140:intron 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG - chr4_3:58500681-58500700 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG - chr4_3:58500682-58500701 None:intergenic 20.0%
!!! TACCTTTTCTAATTTTTCAA+GGG - chr4_3:58500878-58500897 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG + chr4_3:58500960-58500979 Msa0651140:intron 20.0%
!! AATATATGTCACATATTATG+TGG + chr4_3:58501396-58501415 Msa0651140:intron 20.0%
!! ATATATGTCACATATTATGT+GGG + chr4_3:58501397-58501416 Msa0651140:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG - chr4_3:58501845-58501864 None:intergenic 20.0%
!! ATGATTGATGAGATATAATT+TGG + chr4_3:58502499-58502518 Msa0651140:three_prime_UTR 20.0%
!! AAAAAAAAAAAAACTCCTTC+CGG - chr4_3:58502620-58502639 None:intergenic 20.0%
!!! TATATCTTTTGTAAGTTACA+AGG + chr4_3:58502669-58502688 Msa0651140:three_prime_UTR 20.0%
!!! ATACAATTAGTATCATTTTG+AGG + chr4_3:58502769-58502788 Msa0651140:three_prime_UTR 20.0%
! AAAAAAGTGAAAGCTAAAAG+GGG - chr4_3:58497361-58497380 None:intergenic 25.0%
! GAAAAAAGTGAAAGCTAAAA+GGG - chr4_3:58497362-58497381 None:intergenic 25.0%
! AGAAAAAAGTGAAAGCTAAA+AGG - chr4_3:58497363-58497382 None:intergenic 25.0%
! TAATTAACGAACATGAAAGA+AGG + chr4_3:58497472-58497491 Msa0651140:exon 25.0%
! TGATATCAGTTAACTTAAGT+GGG - chr4_3:58497766-58497785 None:intergenic 25.0%
! TTGATATCAGTTAACTTAAG+TGG - chr4_3:58497767-58497786 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG - chr4_3:58497977-58497996 None:intergenic 25.0%
! AAAATTAAAGCAAGAACAAG+AGG + chr4_3:58498115-58498134 Msa0651140:intron 25.0%
! TAAAAAAAAAGATAGGGAAG+TGG - chr4_3:58498188-58498207 None:intergenic 25.0%
! CTAGACATTTGATATATATG+GGG - chr4_3:58498478-58498497 None:intergenic 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG + chr4_3:58498510-58498529 Msa0651140:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG + chr4_3:58498863-58498882 Msa0651140:intron 25.0%
! TTGATCTCCTTATAAAAATG+TGG + chr4_3:58499194-58499213 Msa0651140:intron 25.0%
!! CTCATTACCACATTTTTATA+AGG - chr4_3:58499204-58499223 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4_3:58499810-58499829 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4_3:58499809-58499828 Msa0651140:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_3:58499822-58499841 Msa0651140:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4_3:58499810-58499829 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4_3:58499809-58499828 Msa0651140:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_3:58499822-58499841 Msa0651140:intron 25.0%
!!! TTTTTGAGAAAAGTATCTTC+AGG - chr4_3:58500494-58500513 None:intergenic 25.0%
!! GAAGATACTTTTCTCAAAAA+AGG + chr4_3:58500494-58500513 Msa0651140:intron 25.0%
!! AGATACTTTTCTCAAAAAAG+GGG + chr4_3:58500496-58500515 Msa0651140:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG - chr4_3:58500782-58500801 None:intergenic 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG + chr4_3:58500785-58500804 Msa0651140:intron 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG - chr4_3:58500789-58500808 None:intergenic 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG + chr4_3:58500788-58500807 Msa0651140:intron 25.0%
! AACCCTTGAAAAATTAGAAA+AGG + chr4_3:58500873-58500892 Msa0651140:intron 25.0%
!! CTACCTTTTCTAATTTTTCA+AGG - chr4_3:58500879-58500898 None:intergenic 25.0%
!! CAAATCAAAAAGTATGCATT+AGG + chr4_3:58501049-58501068 Msa0651140:intron 25.0%
! TCTTCATTTCACTTTCTATT+TGG + chr4_3:58501230-58501249 Msa0651140:intron 25.0%
!! GATGATTTTGTGTATATCTT+AGG - chr4_3:58501439-58501458 None:intergenic 25.0%
! AATTCAATGTAATTACGTGT+CGG + chr4_3:58501672-58501691 Msa0651140:intron 25.0%
!!! GATTCATTGATTTTTGATGA+TGG - chr4_3:58502178-58502197 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG + chr4_3:58502204-58502223 Msa0651140:CDS 25.0%
! GTCCATATCAAAAATATGTT+TGG - chr4_3:58502209-58502228 None:intergenic 25.0%
!!! ACATATTTTTGATATGGACA+TGG + chr4_3:58502210-58502229 Msa0651140:CDS 25.0%
!!! ATTTTGATCATAGTCTAGAT+AGG - chr4_3:58502331-58502350 None:intergenic 25.0%
! TATATAAAATAGAACAAGGG+AGG + chr4_3:58502350-58502369 Msa0651140:three_prime_UTR 25.0%
! ATATAAAATAGAACAAGGGA+GGG + chr4_3:58502351-58502370 Msa0651140:three_prime_UTR 25.0%
! TTTCATTTGACATTGTGTTA+AGG + chr4_3:58502550-58502569 Msa0651140:three_prime_UTR 25.0%
! TTCATTTGACATTGTGTTAA+GGG + chr4_3:58502551-58502570 Msa0651140:three_prime_UTR 25.0%
! AGAACATCAAAAAGAACAAA+AGG - chr4_3:58502840-58502859 None:intergenic 25.0%
TTTGTATAGATTAGGGAGAA+GGG + chr4_3:58497181-58497200 Msa0651140:five_prime_UTR 30.0%
TGTCATATGAGATATTCTAG+TGG - chr4_3:58497411-58497430 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG - chr4_3:58497680-58497699 None:intergenic 30.0%
ATATCAGTTAACTTAAGTGG+GGG - chr4_3:58497764-58497783 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG - chr4_3:58497765-58497784 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG + chr4_3:58497816-58497835 Msa0651140:intron 30.0%
! ACTTACTTATTGTCACTTCA+GGG - chr4_3:58498335-58498354 None:intergenic 30.0%
! TACTTACTTATTGTCACTTC+AGG - chr4_3:58498336-58498355 None:intergenic 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG + chr4_3:58498513-58498532 Msa0651140:intron 30.0%
! CTACTGCACACAATTATTTT+GGG - chr4_3:58498634-58498653 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG - chr4_3:58498689-58498708 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG + chr4_3:58498862-58498881 Msa0651140:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr4_3:58499428-58499447 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr4_3:58499429-58499448 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr4_3:58499577-58499596 Msa0651140:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr4_3:58499578-58499597 Msa0651140:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_3:58499835-58499854 Msa0651140:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4_3:58499835-58499854 Msa0651140:intron 30.0%
TTAGAAGAATAAGGATGTGT+GGG - chr4_3:58500354-58500373 None:intergenic 30.0%
ATTAGAAGAATAAGGATGTG+TGG - chr4_3:58500355-58500374 None:intergenic 30.0%
TTTCCATTTGAGAAAAAGAC+AGG + chr4_3:58500465-58500484 Msa0651140:intron 30.0%
! TCACATTGCAATTCTTTTTG+TGG + chr4_3:58500745-58500764 Msa0651140:intron 30.0%
TTACTTGGAAAAAACCATTC+TGG - chr4_3:58500848-58500867 None:intergenic 30.0%
TTCAAGGGTTATTACTTACT+TGG - chr4_3:58500863-58500882 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG + chr4_3:58500887-58500906 Msa0651140:intron 30.0%
TTCTTATTGCGATAACCAAT+AGG + chr4_3:58501102-58501121 Msa0651140:intron 30.0%
AAGGAAACATATTCAATGCT+TGG - chr4_3:58501350-58501369 None:intergenic 30.0%
TGGACTTTGACAATGAAATA+AGG - chr4_3:58501369-58501388 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG - chr4_3:58501389-58501408 None:intergenic 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG - chr4_3:58501870-58501889 None:intergenic 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG + chr4_3:58501907-58501926 Msa0651140:intron 30.0%
GTAAGTCCTGCAAATTAATA+AGG - chr4_3:58501916-58501935 None:intergenic 30.0%
!! TATTTTTGATATGGACATGG+TGG + chr4_3:58502213-58502232 Msa0651140:CDS 30.0%
TATAACCAAACTAATCAAGC+GGG - chr4_3:58502467-58502486 None:intergenic 30.0%
CTATAACCAAACTAATCAAG+CGG - chr4_3:58502468-58502487 None:intergenic 30.0%
GTTTGGTTATAGGTTTCTTA+TGG + chr4_3:58502476-58502495 Msa0651140:three_prime_UTR 30.0%
TTTGTAAGTTACAAGGAACA+TGG + chr4_3:58502676-58502695 Msa0651140:three_prime_UTR 30.0%
GTTTGTATAGATTAGGGAGA+AGG + chr4_3:58497180-58497199 Msa0651140:five_prime_UTR 35.0%
GATATTCTAGTGGAAGAAGA+GGG - chr4_3:58497401-58497420 None:intergenic 35.0%
AGATATTCTAGTGGAAGAAG+AGG - chr4_3:58497402-58497421 None:intergenic 35.0%
TTAACGAACATGAAAGAAGG+TGG + chr4_3:58497475-58497494 Msa0651140:exon 35.0%
TGAACATTAGCAAACTTGTG+AGG - chr4_3:58497607-58497626 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG + chr4_3:58497616-58497635 Msa0651140:CDS 35.0%
! GATCTATTTGATGGCTATGT+GGG + chr4_3:58498146-58498165 Msa0651140:intron 35.0%
! ATCTATTTGATGGCTATGTG+GGG + chr4_3:58498147-58498166 Msa0651140:intron 35.0%
! CCTACTGCACACAATTATTT+TGG - chr4_3:58498635-58498654 None:intergenic 35.0%
CCAAAATAATTGTGTGCAGT+AGG + chr4_3:58498632-58498651 Msa0651140:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG + chr4_3:58498869-58498888 Msa0651140:intron 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG + chr4_3:58498870-58498889 Msa0651140:intron 35.0%
CTACTCAATTTCAGCTACAA+TGG + chr4_3:58499098-58499117 Msa0651140:intron 35.0%
! AATGATAATAGATGGTGTCG+GGG - chr4_3:58499126-58499145 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG - chr4_3:58499127-58499146 None:intergenic 35.0%
GCAATGATAATAGATGGTGT+CGG - chr4_3:58499128-58499147 None:intergenic 35.0%
TTCGCTGCAATGATAATAGA+TGG - chr4_3:58499134-58499153 None:intergenic 35.0%
! TCCTTGCATGGTCAATTTTA+GGG + chr4_3:58499453-58499472 Msa0651140:intron 35.0%
TTAGGGACTAAAGTGACTAA+CGG + chr4_3:58499470-58499489 Msa0651140:intron 35.0%
GTGACCAAACCAAAATTCTT+TGG + chr4_3:58500288-58500307 Msa0651140:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG - chr4_3:58500295-58500314 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG + chr4_3:58500294-58500313 Msa0651140:intron 35.0%
TAGAAGAATAAGGATGTGTG+GGG - chr4_3:58500353-58500372 None:intergenic 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG - chr4_3:58500471-58500490 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr4_3:58500639-58500658 Msa0651140:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr4_3:58500640-58500659 Msa0651140:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG - chr4_3:58500840-58500859 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG - chr4_3:58500844-58500863 None:intergenic 35.0%
AGATGAGACAGACCTAATAT+TGG - chr4_3:58500975-58500994 None:intergenic 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG + chr4_3:58500977-58500996 Msa0651140:intron 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG - chr4_3:58501213-58501232 None:intergenic 35.0%
CAATATTAGACAACTTCACG+TGG - chr4_3:58501315-58501334 None:intergenic 35.0%
TACATATGTGGGCATTTATG+GGG - chr4_3:58501532-58501551 None:intergenic 35.0%
GTACATATGTGGGCATTTAT+GGG - chr4_3:58501533-58501552 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG + chr4_3:58501532-58501551 Msa0651140:intron 35.0%
TCATCTAACCGTACATATGT+GGG - chr4_3:58501543-58501562 None:intergenic 35.0%
TGTGTTTATAGGTCTTTGCA+GGG + chr4_3:58501727-58501746 Msa0651140:intron 35.0%
! TCCAAAATGATGATGCAGTT+TGG - chr4_3:58502111-58502130 None:intergenic 35.0%
!! CGCTTGATTAGTTTGGTTAT+AGG + chr4_3:58502466-58502485 Msa0651140:three_prime_UTR 35.0%
AAGGTTATAGGTTTGGATTG+TGG + chr4_3:58502575-58502594 Msa0651140:three_prime_UTR 35.0%
TTTGGATTGTGGATTCTTCA+TGG + chr4_3:58502586-58502605 Msa0651140:three_prime_UTR 35.0%
ATTCTTCATGGCAAAAAGAC+CGG + chr4_3:58502598-58502617 Msa0651140:three_prime_UTR 35.0%
TAAGTTACAAGGAACATGGA+TGG + chr4_3:58502680-58502699 Msa0651140:three_prime_UTR 35.0%
! TTGCTGCTTCTTTGTAATGT+TGG + chr4_3:58502737-58502756 Msa0651140:three_prime_UTR 35.0%
! TGCTGCTTCTTTGTAATGTT+GGG + chr4_3:58502738-58502757 Msa0651140:three_prime_UTR 35.0%
! AAACAAAGAGTGTGTGGTGT+AGG - chr4_3:58497335-58497354 None:intergenic 40.0%
! GGGAAAAAACAAAGAGTGTG+TGG - chr4_3:58497341-58497360 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG + chr4_3:58497645-58497664 Msa0651140:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG + chr4_3:58498119-58498138 Msa0651140:intron 40.0%
TAAAGCAAGAACAAGAGGCA+GGG + chr4_3:58498120-58498139 Msa0651140:intron 40.0%
! GGATCTATTTGATGGCTATG+TGG + chr4_3:58498145-58498164 Msa0651140:intron 40.0%
GTATTGTTCTGATTCACCTC+AGG + chr4_3:58498559-58498578 Msa0651140:intron 40.0%
CAACTGTCATAGTTATCCTG+AGG - chr4_3:58498578-58498597 None:intergenic 40.0%
TTGGGTAGAGGGAGTAAATT+AGG + chr4_3:58498881-58498900 Msa0651140:intron 40.0%
TAGTCACTTAAGTCCCTGAA+TGG + chr4_3:58499381-58499400 Msa0651140:intron 40.0%
AGTCACTTAAGTCCCTGAAT+GGG + chr4_3:58499382-58499401 Msa0651140:intron 40.0%
ATTGCAAAACAGTCCTTGCA+TGG + chr4_3:58499441-58499460 Msa0651140:intron 40.0%
! GTCCTTGCATGGTCAATTTT+AGG + chr4_3:58499452-58499471 Msa0651140:intron 40.0%
TCCCTAAAATTGACCATGCA+AGG - chr4_3:58499457-58499476 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr4_3:58499485-58499504 Msa0651140:intron 40.0%
ACGAACGAAGTTTGCATTCA+GGG + chr4_3:58499517-58499536 Msa0651140:intron 40.0%
CTTTAGTCCCTGAATCTGAA+GGG - chr4_3:58499619-58499638 None:intergenic 40.0%
ACTTTAGTCCCTGAATCTGA+AGG - chr4_3:58499620-58499639 None:intergenic 40.0%
AGTTAACCAATTAACGCCAC+CGG - chr4_3:58499695-58499714 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr4_3:58499845-58499864 Msa0651140:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr4_3:58499845-58499864 Msa0651140:intron 40.0%
! ACACAAGATTTTCTCGGTCA+AGG - chr4_3:58500154-58500173 None:intergenic 40.0%
TTGACCGAGAAAATCTTGTG+TGG + chr4_3:58500153-58500172 Msa0651140:intron 40.0%
! AGGACCACACAAGATTTTCT+CGG - chr4_3:58500160-58500179 None:intergenic 40.0%
AAGGAAGAGAAACACTTGTG+TGG - chr4_3:58500321-58500340 None:intergenic 40.0%
AATAAGGATGTGTGGGGATA+TGG - chr4_3:58500347-58500366 None:intergenic 40.0%
AAGGGGAAGACACAAGTTAA+TGG + chr4_3:58500513-58500532 Msa0651140:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr4_3:58500657-58500676 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr4_3:58500658-58500677 None:intergenic 40.0%
!! TTTTAGGGATCACATGCACA+TGG - chr4_3:58501007-58501026 None:intergenic 40.0%
CCACGTTTACAAACTCCTAT+TGG - chr4_3:58501120-58501139 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG + chr4_3:58501117-58501136 Msa0651140:intron 40.0%
ACTTTCTATTTGGCGCCATT+AGG + chr4_3:58501240-58501259 Msa0651140:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG - chr4_3:58501302-58501321 None:intergenic 40.0%
AGAAATGAATGGTGACAGGT+GGG - chr4_3:58501479-58501498 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG + chr4_3:58501486-58501505 Msa0651140:intron 40.0%
CGTACATATGTGGGCATTTA+TGG - chr4_3:58501534-58501553 None:intergenic 40.0%
GTCATCTAACCGTACATATG+TGG - chr4_3:58501544-58501563 None:intergenic 40.0%
! ATGTAATTACGTGTCGGTCT+CGG + chr4_3:58501678-58501697 Msa0651140:intron 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG + chr4_3:58501716-58501735 Msa0651140:intron 40.0%
CTGTGTTTATAGGTCTTTGC+AGG + chr4_3:58501726-58501745 Msa0651140:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG + chr4_3:58501930-58501949 Msa0651140:CDS 40.0%
CACATCAATCTGTTGCTGAA+GGG - chr4_3:58502035-58502054 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG + chr4_3:58502048-58502067 Msa0651140:CDS 40.0%
! GCCAAACTGCATCATCATTT+TGG + chr4_3:58502107-58502126 Msa0651140:CDS 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG + chr4_3:58502118-58502137 Msa0651140:CDS 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG + chr4_3:58502119-58502138 Msa0651140:CDS 40.0%
! TTTTGATATGGACATGGTGG+TGG + chr4_3:58502216-58502235 Msa0651140:CDS 40.0%
TCACCACATTGAATCACCAT+AGG - chr4_3:58502251-58502270 None:intergenic 40.0%
! AACTAGAACTCTAGAAGCAG+TGG + chr4_3:58502425-58502444 Msa0651140:three_prime_UTR 40.0%
TTGACATTGTGTTAAGGGCA+AGG + chr4_3:58502556-58502575 Msa0651140:three_prime_UTR 40.0%
TGTGTTAAGGGCAAGGTTAT+AGG + chr4_3:58502563-58502582 Msa0651140:three_prime_UTR 40.0%
TAAGGGCAAGGTTATAGGTT+TGG + chr4_3:58502568-58502587 Msa0651140:three_prime_UTR 40.0%
AGGAACATGGATGGATCTAT+TGG + chr4_3:58502689-58502708 Msa0651140:three_prime_UTR 40.0%
AAAAGAGCAAAGCAGCAGCA+TGG - chr4_3:58497226-58497245 None:intergenic 45.0%
!! GTGGTGTAGGAAATGGACTA+CGG - chr4_3:58497322-58497341 None:intergenic 45.0%
AGAGTGTGTGGTGTAGGAAA+TGG - chr4_3:58497329-58497348 None:intergenic 45.0%
ACGAACATGAAAGAAGGTGG+AGG + chr4_3:58497478-58497497 Msa0651140:exon 45.0%
AAAGCAAGAACAAGAGGCAG+GGG + chr4_3:58498121-58498140 Msa0651140:intron 45.0%
AAGATAGGGAAGTGGCATGT+GGG - chr4_3:58498180-58498199 None:intergenic 45.0%
AAAGATAGGGAAGTGGCATG+TGG - chr4_3:58498181-58498200 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr4_3:58499484-58499503 Msa0651140:intron 45.0%
GACGAACGAAGTTTGCATTC+AGG + chr4_3:58499516-58499535 Msa0651140:intron 45.0%
TGACGAATCCCTTCAGATTC+AGG + chr4_3:58499608-58499627 Msa0651140:intron 45.0%
GACGAATCCCTTCAGATTCA+GGG + chr4_3:58499609-58499628 Msa0651140:intron 45.0%
AGAGGAATGCAAGCAAACTC+CGG + chr4_3:58499673-58499692 Msa0651140:intron 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr4_3:58500159-58500178 Msa0651140:intron 45.0%
AAATACCACTTGTGTGGACC+AGG - chr4_3:58500180-58500199 None:intergenic 45.0%
TGGTCCACACAAGTGGTATT+TGG + chr4_3:58500179-58500198 Msa0651140:intron 45.0%
GTGACCAAATACCACTTGTG+TGG - chr4_3:58500186-58500205 None:intergenic 45.0%
CAGAGAAGAGAACAGAGAGA+AGG + chr4_3:58500250-58500269 Msa0651140:intron 45.0%
! GGACCAGGACCAAAGAATTT+TGG - chr4_3:58500300-58500319 None:intergenic 45.0%
ATGTGTGGGGATATGGTCTA+AGG - chr4_3:58500340-58500359 None:intergenic 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG - chr4_3:58500817-58500836 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG + chr4_3:58500831-58500850 Msa0651140:intron 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG - chr4_3:58500835-58500854 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG - chr4_3:58500922-58500941 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG - chr4_3:58500933-58500952 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG - chr4_3:58501151-58501170 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG - chr4_3:58501152-58501171 None:intergenic 45.0%
! CAGGTGGGGAGAATTTTGTA+TGG - chr4_3:58501464-58501483 None:intergenic 45.0%
GAAATGAATGGTGACAGGTG+GGG - chr4_3:58501478-58501497 None:intergenic 45.0%
GAGAAATGAATGGTGACAGG+TGG - chr4_3:58501480-58501499 None:intergenic 45.0%
GTGGAGAAATGAATGGTGAC+AGG - chr4_3:58501483-58501502 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG + chr4_3:58501485-58501504 Msa0651140:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG + chr4_3:58501487-58501506 Msa0651140:intron 45.0%
TATGTGGGCATTTATGGGGA+CGG - chr4_3:58501528-58501547 None:intergenic 45.0%
GACTTACCTGAGCATCAAAG+AGG + chr4_3:58501929-58501948 Msa0651140:CDS 45.0%
CTTACCTGAGCATCAAAGAG+GGG + chr4_3:58501931-58501950 Msa0651140:CDS 45.0%
GCACATCAATCTGTTGCTGA+AGG - chr4_3:58502036-58502055 None:intergenic 45.0%
AGCTTGTGCTACAGCCAATT+GGG - chr4_3:58502065-58502084 None:intergenic 45.0%
TTGAATCACCATAGGCAGCT+TGG - chr4_3:58502243-58502262 None:intergenic 45.0%
CTGCCTATGGTGATTCAATG+TGG + chr4_3:58502245-58502264 Msa0651140:CDS 45.0%
! TAGAACTCTAGAAGCAGTGG+CGG + chr4_3:58502428-58502447 Msa0651140:three_prime_UTR 45.0%
AAACTAATCAAGCGGGCGAA+CGG - chr4_3:58502460-58502479 None:intergenic 45.0%
TTCATGGCAAAAAGACCGGA+AGG + chr4_3:58502602-58502621 Msa0651140:three_prime_UTR 45.0%
!! AATATATAAAAAAAAAGATA+GGG - chr4_3:58498194-58498213 None:intergenic 5.0%
!! TAATATATAAAAAAAAAGAT+AGG - chr4_3:58498195-58498214 None:intergenic 5.0%
!! TTTATATATATTAAAAAAAG+GGG + chr4_3:58499355-58499374 Msa0651140:intron 5.0%
AGGAAGGAAGGAAGGAAGAG+CGG - chr4_3:58497276-58497295 None:intergenic 50.0%
GGACTACTAGGAAGGAAGGA+AGG - chr4_3:58497284-58497303 None:intergenic 50.0%
GTAGGGACTACTAGGAAGGA+AGG - chr4_3:58497288-58497307 None:intergenic 50.0%
CAGTGTAGGGACTACTAGGA+AGG - chr4_3:58497292-58497311 None:intergenic 50.0%
AGAGCAGTGTAGGGACTACT+AGG - chr4_3:58497296-58497315 None:intergenic 50.0%
!! GTGTAGGAAATGGACTACGG+TGG - chr4_3:58497319-58497338 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG + chr4_3:58497493-58497512 Msa0651140:CDS 50.0%
AGAAGCTTGCATGCAGCACA+AGG - chr4_3:58497529-58497548 None:intergenic 50.0%
ACTTGTGAGGCTCATCAGCA+GGG - chr4_3:58497594-58497613 None:intergenic 50.0%
AACTTGTGAGGCTCATCAGC+AGG - chr4_3:58497595-58497614 None:intergenic 50.0%
AGATAGGGAAGTGGCATGTG+GGG - chr4_3:58498179-58498198 None:intergenic 50.0%
CACTTGTCACAACGACACGT+TGG - chr4_3:58499165-58499184 None:intergenic 50.0%
CTTAAGTCCCTGAATGGGAG+AGG + chr4_3:58499387-58499406 Msa0651140:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG - chr4_3:58499397-58499416 None:intergenic 50.0%
CAAACTCCGGTGGCGTTAAT+TGG + chr4_3:58499686-58499705 Msa0651140:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr4_3:58500315-58500334 None:intergenic 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG - chr4_3:58500824-58500843 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG - chr4_3:58500830-58500849 None:intergenic 50.0%
GTATTGCCCCCCAAAAGTCA+GGG + chr4_3:58501139-58501158 Msa0651140:intron 50.0%
! TGCATGACCCTGACTTTTGG+GGG - chr4_3:58501149-58501168 None:intergenic 50.0%
! GTGCATGACCCTGACTTTTG+GGG - chr4_3:58501150-58501169 None:intergenic 50.0%
CCCCAAGGTGGAGAAATGAA+TGG - chr4_3:58501490-58501509 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG - chr4_3:58501502-58501521 None:intergenic 50.0%
GACATGGGAAAATCTCCCCA+AGG - chr4_3:58501505-58501524 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG - chr4_3:58501520-58501539 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG - chr4_3:58501527-58501546 None:intergenic 50.0%
TTAGATGACCCTGCAGGACA+GGG + chr4_3:58501555-58501574 Msa0651140:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG + chr4_3:58501695-58501714 Msa0651140:intron 50.0%
AGAGTGAGAGACCCTGTGTA+TGG + chr4_3:58501989-58502008 Msa0651140:CDS 50.0%
AGACCCTGTGTATGGTTGTG+TGG + chr4_3:58501997-58502016 Msa0651140:CDS 50.0%
GACCCTGTGTATGGTTGTGT+GGG + chr4_3:58501998-58502017 Msa0651140:CDS 50.0%
ACCCTGTGTATGGTTGTGTG+GGG + chr4_3:58501999-58502018 Msa0651140:CDS 50.0%
CAGCTTGTGCTACAGCCAAT+TGG - chr4_3:58502066-58502085 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG + chr4_3:58502066-58502085 Msa0651140:CDS 50.0%
!! CCACTATAGGTTGGGCTAGT+TGG - chr4_3:58502151-58502170 None:intergenic 50.0%
CCAACTAGCCCAACCTATAG+TGG + chr4_3:58502148-58502167 Msa0651140:CDS 50.0%
! GTTCGCCCGCTTGATTAGTT+TGG + chr4_3:58502459-58502478 Msa0651140:three_prime_UTR 50.0%
ATTAGGGAGAAGGGCCCACA+TGG + chr4_3:58497190-58497209 Msa0651140:five_prime_UTR 55.0%
ATGGCACCACCACTCCATGT+GGG - chr4_3:58497207-58497226 None:intergenic 55.0%
CTACGGTGGAGAGCAGTGTA+GGG - chr4_3:58497305-58497324 None:intergenic 55.0%
ACTACGGTGGAGAGCAGTGT+AGG - chr4_3:58497306-58497325 None:intergenic 55.0%
CTTGCATGCAGCACAAGGTG+AGG - chr4_3:58497524-58497543 None:intergenic 55.0%
GGCTCATCAGCAGGGAAGTA+AGG - chr4_3:58497586-58497605 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG + chr4_3:58498137-58498156 Msa0651140:intron 55.0%
CGACGAATCCTCTCCCATTC+AGG - chr4_3:58499398-58499417 None:intergenic 55.0%
GGAATGCAAGCAAACTCCGG+TGG + chr4_3:58499676-58499695 Msa0651140:intron 55.0%
GGTATTGCCCCCCAAAAGTC+AGG + chr4_3:58501138-58501157 Msa0651140:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG - chr4_3:58501148-58501167 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG - chr4_3:58501521-58501540 None:intergenic 55.0%
GTACGGTTAGATGACCCTGC+AGG + chr4_3:58501549-58501568 Msa0651140:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG + chr4_3:58501554-58501573 Msa0651140:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG + chr4_3:58501556-58501575 Msa0651140:intron 55.0%
CATCATACCCCTGTCCTGCA+GGG - chr4_3:58501566-58501585 None:intergenic 55.0%
CGGTCTCGGACACTGAAAGT+TGG + chr4_3:58501692-58501711 Msa0651140:intron 55.0%
CGGACACTGAAAGTTGGAGG+AGG + chr4_3:58501698-58501717 Msa0651140:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG - chr4_3:58501938-58501957 None:intergenic 55.0%
AGGGGATGCAGTGAGTAGCA+TGG + chr4_3:58501949-58501968 Msa0651140:CDS 55.0%
CCCCCACACAACCATACACA+GGG - chr4_3:58502003-58502022 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG + chr4_3:58502000-58502019 Msa0651140:CDS 55.0%
AAGCTGAGGCAGTGCACCTA+AGG + chr4_3:58502080-58502099 Msa0651140:CDS 55.0%
AGCTGAGGCAGTGCACCTAA+GGG + chr4_3:58502081-58502100 Msa0651140:CDS 55.0%
ATGCAGTTTGGCGCACCCTT+AGG - chr4_3:58502099-58502118 None:intergenic 55.0%
! AACTCTAGAAGCAGTGGCGG+CGG + chr4_3:58502431-58502450 Msa0651140:three_prime_UTR 55.0%
CATGGCACCACCACTCCATG+TGG - chr4_3:58497208-58497227 None:intergenic 60.0%
GCAAGAACAAGAGGCAGGGG+CGG + chr4_3:58498124-58498143 Msa0651140:intron 60.0%
GTGGTCCTGGTCCACACAAG+TGG + chr4_3:58500172-58500191 Msa0651140:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG - chr4_3:58501567-58501586 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG - chr4_3:58502004-58502023 None:intergenic 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG + chr4_3:58502232-58502251 Msa0651140:CDS 60.0%
GGAGAAGGGCCCACATGGAG+TGG + chr4_3:58497195-58497214 Msa0651140:five_prime_UTR 65.0%
GAAGGGCCCACATGGAGTGG+TGG + chr4_3:58497198-58497217 Msa0651140:five_prime_UTR 65.0%
TCTAGAAGCAGTGGCGGCGG+CGG + chr4_3:58502434-58502453 Msa0651140:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58497173 58502888 58497173 ID=Msa0651140;Name=Msa0651140
chr4_3 mRNA 58497173 58502888 58497173 ID=Msa0651140-mRNA-1;Parent=Msa0651140;Name=Msa0651140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=311|1|1|1|1|1|2|618|174
chr4_3 exon 58497173 58497666 58497173 ID=Msa0651140-mRNA-1:exon:15500;Parent=Msa0651140-mRNA-1
chr4_3 exon 58501929 58502888 58501929 ID=Msa0651140-mRNA-1:exon:15501;Parent=Msa0651140-mRNA-1
chr4_3 five_prime_UTR 58497173 58497483 58497173 ID=Msa0651140-mRNA-1:five_prime_utr;Parent=Msa0651140-mRNA-1
chr4_3 CDS 58497484 58497666 58497484 ID=Msa0651140-mRNA-1:cds;Parent=Msa0651140-mRNA-1
chr4_3 CDS 58501929 58502270 58501929 ID=Msa0651140-mRNA-1:cds;Parent=Msa0651140-mRNA-1
chr4_3 three_prime_UTR 58502271 58502888 58502271 ID=Msa0651140-mRNA-1:three_prime_utr;Parent=Msa0651140-mRNA-1
Gene Sequence

>Msa0651140

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>Msa0651140

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW*