AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662180 MtrunA17_Chr4g0043421 98.276 174 3 0 1 174 1 174 3.68e-129 359
Msa0662180 MtrunA17_Chr2g0311601 82.400 125 20 1 1 125 1 123 8.54e-74 218
Msa0662180 MtrunA17_Chr5g0437571 73.874 111 29 0 11 121 2 112 1.17e-57 178
Msa0662180 MtrunA17_Chr3g0114061 61.224 147 48 3 5 146 2 144 3.51e-57 176
Msa0662180 MtrunA17_Chr3g0106101 65.000 120 42 0 11 130 3 122 3.88e-57 177
Msa0662180 MtrunA17_Chr4g0030001 66.667 111 36 1 14 123 23 133 1.18e-50 161
Msa0662180 MtrunA17_Chr6g0449641 55.797 138 57 2 14 151 8 141 2.12e-49 156
Msa0662180 MtrunA17_Chr1g0200201 67.290 107 35 0 16 122 73 179 8.56e-49 157
Msa0662180 MtrunA17_Chr3g0129071 62.162 111 42 0 14 124 46 156 9.94e-48 155
Msa0662180 MtrunA17_Chr5g0438091 62.727 110 41 0 5 114 29 138 1.45e-47 153
Msa0662180 MtrunA17_Chr3g0117121 65.714 105 36 0 14 118 9 113 2.34e-47 152
Msa0662180 MtrunA17_Chr4g0058651 65.385 104 36 0 14 117 10 113 3.78e-47 152
Msa0662180 MtrunA17_Chr7g0227511 64.078 103 37 0 14 116 10 112 4.80e-47 151
Msa0662180 MtrunA17_Chr6g0449651 61.905 105 40 0 14 118 66 170 1.22e-46 151
Msa0662180 MtrunA17_Chr5g0432451 62.097 124 46 1 14 137 42 164 5.03e-44 145
Msa0662180 MtrunA17_Chr3g0113891 62.376 101 38 0 12 112 11 111 2.70e-42 139
Msa0662180 MtrunA17_Chr3g0115431 60.784 102 40 0 13 114 7 108 6.58e-42 139
Msa0662180 MtrunA17_Chr5g0402611 63.366 101 37 0 14 114 7 107 9.62e-42 142
Msa0662180 MtrunA17_Chr5g0437401 60.396 101 40 0 12 112 8 108 1.84e-41 137
Msa0662180 MtrunA17_Chr7g0260971 56.481 108 46 1 11 117 10 117 1.23e-40 136
Msa0662180 MtrunA17_Chr8g0353981 65.347 101 35 0 14 114 6 106 1.68e-40 136
Msa0662180 MtrunA17_Chr3g0097221 60.396 101 40 0 14 114 6 106 5.20e-40 137
Msa0662180 MtrunA17_Chr1g0184281 52.137 117 55 1 1 116 1 117 4.52e-39 132
Msa0662180 MtrunA17_Chr8g0351721 54.867 113 48 2 2 113 7 117 5.83e-37 127
Msa0662180 MtrunA17_Chr7g0225111 51.402 107 52 0 14 120 4 110 1.31e-36 123
Msa0662180 MtrunA17_Chr8g0351701 56.566 99 42 1 15 112 23 121 1.06e-35 124
Msa0662180 MtrunA17_Chr5g0444351 53.535 99 46 0 16 114 6 104 1.14e-35 121
Msa0662180 MtrunA17_Chr7g0245871 56.000 100 43 1 15 113 27 126 8.01e-35 122
Msa0662180 MtrunA17_Chr6g0460951 49.074 108 54 1 14 120 39 146 1.68e-34 120
Msa0662180 MtrunA17_Chr7g0261031 52.830 106 49 1 11 115 4 109 1.57e-33 118
Msa0662180 MtrunA17_Chr1g0184271 52.941 102 47 1 15 115 12 113 9.45e-33 116
Msa0662180 MtrunA17_Chr5g0435641 50.495 101 49 1 11 110 3 103 1.26e-31 112
Msa0662180 MtrunA17_Chr7g0245861 51.923 104 44 3 1 101 1 101 2.55e-29 105
Msa0662180 MtrunA17_Chr8g0374591 42.982 114 65 0 15 128 8 121 5.34e-29 103
Msa0662180 MtrunA17_Chr8g0374601 40.152 132 74 2 15 141 26 157 6.64e-29 107
Msa0662180 MtrunA17_Chr4g0059901 48.000 100 52 0 9 108 4 103 9.69e-29 107
Msa0662180 MtrunA17_Chr6g0452691 35.821 134 77 3 16 141 10 142 1.05e-26 99.8
Msa0662180 MtrunA17_Chr6g0460941 47.727 88 45 1 15 101 7 94 2.08e-26 96.3
Msa0662180 MtrunA17_Chr6g0452671 34.783 138 87 2 16 153 12 146 2.10e-26 99.4
Msa0662180 MtrunA17_Chr8g0342351 40.385 104 62 0 16 119 13 116 2.51e-25 98.2
Msa0662180 MtrunA17_Chr2g0330201 38.462 104 64 0 11 114 15 118 5.19e-25 98.2
Msa0662180 MtrunA17_Chr6g0452661 47.500 80 41 1 16 94 10 89 1.08e-24 96.3
Msa0662180 MtrunA17_Chr8g0374581 46.602 103 54 1 15 116 8 110 1.16e-24 95.5
Msa0662180 MtrunA17_Chr4g0055441 43.617 94 48 2 16 104 3 96 2.84e-23 90.1
Msa0662180 MtrunA17_Chr2g0326051 60.938 64 25 0 60 123 5 68 4.61e-23 88.6
Msa0662180 MtrunA17_Chr5g0439111 33.974 156 83 5 16 154 10 162 5.60e-22 88.6
Msa0662180 MtrunA17_Chr4g0040831 37.000 100 63 0 11 110 11 110 8.10e-22 87.4
Msa0662180 MtrunA17_Chr2g0326041 65.385 52 18 0 10 61 28 79 3.86e-21 82.8
Msa0662180 MtrunA17_Chr4g0046201 38.372 86 53 0 16 101 7 92 7.57e-18 78.6
Msa0662180 MtrunA17_Chr2g0326821 30.392 102 67 3 15 114 2 101 4.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662180 AT1G31320.1 74.713 174 40 2 1 174 1 170 2.72e-73 218
Msa0662180 AT2G30130.1 75.229 109 27 0 13 121 6 114 1.05e-57 179
Msa0662180 AT1G16530.1 54.237 177 55 6 6 174 5 163 3.47e-57 177
Msa0662180 AT5G63090.4 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0662180 AT5G63090.3 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0662180 AT5G63090.2 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0662180 AT5G63090.1 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0662180 AT1G07900.1 63.636 110 40 0 14 123 32 141 2.55e-48 155
Msa0662180 AT2G28500.1 62.162 111 42 0 14 124 54 164 4.15e-47 154
Msa0662180 AT2G30340.1 57.377 122 50 1 11 130 48 169 4.75e-47 154
Msa0662180 AT2G30340.2 57.851 121 49 1 12 130 50 170 5.49e-47 154
Msa0662180 AT3G27650.1 64.356 101 36 0 14 114 38 138 4.96e-46 148
Msa0662180 AT2G40470.2 62.281 114 43 0 14 127 19 132 2.88e-45 148
Msa0662180 AT2G40470.1 62.281 114 43 0 14 127 44 157 7.33e-45 147
Msa0662180 AT2G23660.2 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0662180 AT2G23660.3 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0662180 AT2G23660.1 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0662180 AT5G66870.1 62.136 103 39 0 12 114 4 106 1.11e-41 142
Msa0662180 AT3G26660.1 54.867 113 49 1 16 126 6 118 7.82e-41 134
Msa0662180 AT3G26620.1 59.596 99 40 0 16 114 6 104 1.17e-40 134
Msa0662180 AT1G65620.1 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0662180 AT1G65620.4 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0662180 AT1G65620.3 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0662180 AT1G65620.5 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0662180 AT1G65620.2 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0662180 AT3G11090.1 53.226 124 51 1 12 135 8 124 8.20e-40 133
Msa0662180 AT2G42430.1 52.174 115 54 1 1 114 1 115 8.67e-39 132
Msa0662180 AT3G03760.1 54.630 108 48 1 14 120 50 157 2.36e-37 130
Msa0662180 AT2G42440.1 46.565 131 69 1 11 140 3 133 4.50e-36 125
Msa0662180 AT4G00220.1 56.731 104 44 1 18 120 20 123 4.93e-36 125
Msa0662180 AT2G31310.1 52.830 106 49 1 11 115 3 108 6.27e-36 124
Msa0662180 AT4G00210.1 48.344 151 73 3 11 157 7 156 1.03e-35 124
Msa0662180 AT2G45410.1 59.794 97 38 1 18 113 19 115 2.44e-33 117
Msa0662180 AT2G45420.1 52.885 104 48 1 18 120 40 143 6.66e-33 118
Msa0662180 AT5G06080.1 54.639 97 43 1 13 108 5 101 1.36e-32 115
Msa0662180 AT3G58190.1 50.980 102 49 1 15 115 11 112 1.09e-31 114
Msa0662180 AT3G50510.1 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0662180 AT3G50510.2 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0662180 AT1G72980.1 43.269 104 59 0 11 114 9 112 5.26e-28 104
Msa0662180 AT3G13850.1 42.453 106 61 0 16 121 37 142 1.77e-27 104
Msa0662180 AT3G47870.1 42.453 106 61 0 9 114 30 135 5.85e-27 103
Msa0662180 AT5G35900.1 42.424 99 57 0 16 114 6 104 1.69e-24 95.1
Msa0662180 AT1G06280.1 38.462 91 56 0 16 106 25 115 1.39e-19 82.0
Msa0662180 AT2G19820.1 39.583 96 57 1 14 108 11 106 2.05e-19 79.7
Msa0662180 AT5G15060.1 40.449 89 49 2 1 86 3 90 1.02e-17 75.9
Msa0662180 AT1G36000.1 28.814 118 84 0 11 128 5 122 1.42e-14 67.0
Msa0662180 AT4G22700.1 35.238 105 64 3 12 114 2 104 3.72e-14 67.4
Msa0662180 AT2G19510.1 28.571 98 70 0 11 108 5 102 1.50e-12 61.6
Msa0662180 AT3G27940.3 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0662180 AT3G27940.1 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0662180 AT3G27940.2 32.432 74 50 0 13 86 3 76 4.88e-11 58.5

Find 93 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4_3:-74103217 Msa0662180:CDS
GTTTGGTTATAGGTTTCTTA+TGG 0.279365 4_3:-74102848 Msa0662180:three_prime_UTR
TTCATTTGACATTGTGTTAA+GGG 0.294642 4_3:-74102773 Msa0662180:three_prime_UTR
CCTGCATTATATAATAATTA+AGG 0.294947 4_3:+74108082 None:intergenic
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4_3:-74107716 Msa0662180:CDS
TGCTGCTTCTTTGTAATGTT+GGG 0.310273 4_3:-74102588 Msa0662180:three_prime_UTR
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4_3:+74103261 None:intergenic
ATGATTGATGAGATATAATT+TGG 0.320770 4_3:-74102825 Msa0662180:three_prime_UTR
CGCTTGATTAGTTTGGTTAT+AGG 0.334957 4_3:-74102858 Msa0662180:three_prime_UTR
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4_3:+74103176 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4_3:+74103262 None:intergenic
TGTGTTAAGGGCAAGGTTAT+AGG 0.358958 4_3:-74102761 Msa0662180:three_prime_UTR
GTTCGCCCGCTTGATTAGTT+TGG 0.365439 4_3:-74102865 Msa0662180:three_prime_UTR
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4_3:+74103228 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4_3:-74107687 Msa0662180:intron
TTTGGATTGTGGATTCTTCA+TGG 0.376459 4_3:-74102738 Msa0662180:three_prime_UTR
TTTCATTTGACATTGTGTTA+AGG 0.388396 4_3:-74102774 Msa0662180:three_prime_UTR
TTGCTGCTTCTTTGTAATGT+TGG 0.390235 4_3:-74102589 Msa0662180:three_prime_UTR
AGGAACATGGATGGATCTAT+TGG 0.397456 4_3:-74102637 Msa0662180:three_prime_UTR
TAAGGGCAAGGTTATAGGTT+TGG 0.401482 4_3:-74102756 Msa0662180:three_prime_UTR
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4_3:-74103244 Msa0662180:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4_3:+74107749 None:intergenic
AGAGAGTGTGGTGTAGGAAA+TGG 0.436476 4_3:+74108006 None:intergenic
TCCAAAATGATGATGCAGTT+TGG 0.439033 4_3:+74103216 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4_3:+74107740 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4_3:+74103389 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4_3:-74103176 Msa0662180:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4_3:+74103163 None:intergenic
TCTAGAAGCAGTGGCGGCGG+CGG 0.476603 4_3:-74102890 Msa0662180:three_prime_UTR
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4_3:-74103326 Msa0662180:CDS
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4_3:+74103168 None:intergenic
GTTTGTATAGATTAGGGAGA+AGG 0.505034 4_3:-74108152 Msa0662180:five_prime_UTR
ACTATGGTGGAGAGCAATGT+AGG 0.513474 4_3:+74108029 None:intergenic
CCTTAATTATTATATAATGC+AGG 0.515982 4_3:-74108082 Msa0662180:five_prime_UTR
AGATATTCTAGTGGAAGAAG+AGG 0.521031 4_3:+74107933 None:intergenic
TTGACATTGTGTTAAGGGCA+AGG 0.521941 4_3:-74102768 Msa0662180:three_prime_UTR
AAACAAAGAGAGTGTGGTGT+AGG 0.532357 4_3:+74108000 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4_3:+74103167 None:intergenic
AGAGCAATGTAGGGACTACT+AGG 0.535702 4_3:+74108039 None:intergenic
GAAGGGCCCACATGGAGTGG+TGG 0.540327 4_3:-74108134 Msa0662180:five_prime_UTR
TTGAATCACCATAGGCAGCT+TGG 0.540807 4_3:+74103084 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4_3:-74103276 Msa0662180:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4_3:-74103327 Msa0662180:CDS
AACTCTAGAAGCAGTGGCGG+CGG 0.552581 4_3:-74102893 Msa0662180:three_prime_UTR
TATATAAAATAGAACAAGGG+AGG 0.553832 4_3:-74102974 Msa0662180:three_prime_UTR
TTTGTATAGATTAGGGAGAA+GGG 0.555419 4_3:-74108151 Msa0662180:five_prime_UTR
TAATTAACGAACATGAAAGA+AGG 0.557964 4_3:-74107860 Msa0662180:exon
GCACATCAATCTGTTGCTGA+AGG 0.564578 4_3:+74103291 None:intergenic
AAGGTTATAGGTTTGGATTG+TGG 0.568703 4_3:-74102749 Msa0662180:three_prime_UTR
ATTAGGGAGAAGGGCCCACA+TGG 0.568783 4_3:-74108142 Msa0662180:five_prime_UTR
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4_3:-74103092 Msa0662180:CDS
GATATTCTAGTGGAAGAAGA+GGG 0.573147 4_3:+74107934 None:intergenic
AAACTAATCAAGCGGGCGAA+CGG 0.576829 4_3:+74102867 None:intergenic
TAAGTTACAAGGAACATGGA+TGG 0.577180 4_3:-74102646 Msa0662180:three_prime_UTR
CAATGTAGGGACTACTAGGA+AGG 0.577613 4_3:+74108043 None:intergenic
GTAGGGACTACTAGGAAGGA+AGG 0.577858 4_3:+74108047 None:intergenic
GGAGAAGGGCCCACATGGAG+TGG 0.583930 4_3:-74108137 Msa0662180:five_prime_UTR
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4_3:+74107811 None:intergenic
GTGGTGTAGGAAATGGACTA+TGG 0.586327 4_3:+74108013 None:intergenic
TTTGTAAGTTACAAGGAACA+TGG 0.587208 4_3:-74102650 Msa0662180:three_prime_UTR
CTATGGTGGAGAGCAATGTA+GGG 0.587811 4_3:+74108030 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4_3:+74107806 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4_3:-74103335 Msa0662180:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4_3:-74103394 Msa0662180:CDS
AACTAGAACTCTAGAAGCAG+TGG 0.602973 4_3:-74102899 Msa0662180:three_prime_UTR
CACATCAATCTGTTGCTGAA+GGG 0.604124 4_3:+74103292 None:intergenic
GGACTACTAGGAAGGAAGGA+AGG 0.605170 4_3:+74108051 None:intergenic
AAAATATATAAAATAGAACA+AGG 0.607211 4_3:-74102978 Msa0662180:three_prime_UTR
GACTTACCTGAGCATCAAAG+AGG 0.607217 4_3:-74103395 Msa0662180:CDS
ATATAAAATAGAACAAGGGA+GGG 0.609288 4_3:-74102973 Msa0662180:three_prime_UTR
TAGAACTCTAGAAGCAGTGG+CGG 0.612185 4_3:-74102896 Msa0662180:three_prime_UTR
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4_3:-74103243 Msa0662180:CDS
CATGGCACCACCACTCCATG+TGG 0.614429 4_3:+74108127 None:intergenic
CTATAACCAAACTAATCAAG+CGG 0.614673 4_3:+74102859 None:intergenic
AAAAGAGCAAAGCAGCAGCA+TGG 0.618195 4_3:+74108109 None:intergenic
TTAACGAACATGAAAGAAGG+TGG 0.619833 4_3:-74107857 Msa0662180:exon
TATAACCAAACTAATCAAGC+GGG 0.626817 4_3:+74102860 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4_3:+74107728 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4_3:-74103324 Msa0662180:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4_3:+74103076 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4_3:-74103325 Msa0662180:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4_3:-74103375 Msa0662180:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4_3:-74107854 Msa0662180:exon
GTGTAGGAAATGGACTATGG+TGG 0.639929 4_3:+74108016 None:intergenic
TGTCATATGAGATATTCTAG+TGG 0.642349 4_3:+74107924 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4_3:-74103258 Msa0662180:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4_3:-74107839 Msa0662180:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4_3:+74107741 None:intergenic
AGGAAGGAAGGAAGGAAGAG+CGG 0.659063 4_3:+74108059 None:intergenic
ATGGCACCACCACTCCATGT+GGG 0.666308 4_3:+74108128 None:intergenic
AAATATATAAAATAGAACAA+GGG 0.693924 4_3:-74102977 Msa0662180:three_prime_UTR
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4_3:-74103393 Msa0662180:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4_3:-74103079 Msa0662180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTACATTATAATATT+AGG - chr4_3:74103274-74103293 Msa0662180:CDS 10.0%
!!! TTTAAAATTTTGATACATTA+AGG - chr4_3:74103920-74103939 Msa0662180:intron 10.0%
!!! TTAAAATTTTGATACATTAA+GGG - chr4_3:74103921-74103940 Msa0662180:intron 10.0%
!! TTTAGAAAAGAAAAAAAAAA+TGG - chr4_3:74105698-74105717 Msa0662180:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG - chr4_3:74105828-74105847 Msa0662180:intron 10.0%
!!! TATAGTAATTTTAATTTTAG+TGG + chr4_3:74107585-74107604 None:intergenic 10.0%
!! AAAATATATAAAATAGAACA+AGG - chr4_3:74107641-74107660 Msa0662180:intron 10.0%
!! AAATATATAAAATAGAACAA+GGG - chr4_3:74107642-74107661 Msa0662180:intron 10.0%
!! AAAAATGTTTGTATAGATTA+GGG - chr4_3:74102461-74102480 Msa0662180:three_prime_UTR 15.0%
!! TATGTATAATATTAGATAGA+TGG + chr4_3:74103502-74103521 None:intergenic 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG - chr4_3:74103860-74103879 Msa0662180:intron 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG - chr4_3:74103861-74103880 Msa0662180:intron 15.0%
!!! ATATTTTCTTAATAAGCAAA+TGG + chr4_3:74104079-74104098 None:intergenic 15.0%
!! AGAAATAAATATGAACAATT+TGG + chr4_3:74104184-74104203 None:intergenic 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG - chr4_3:74104302-74104321 Msa0662180:intron 15.0%
!! CTGCAAAATTATTATTAATT+GGG + chr4_3:74104402-74104421 None:intergenic 15.0%
!! ACTGCAAAATTATTATTAAT+TGG + chr4_3:74104403-74104422 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG + chr4_3:74104430-74104449 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG + chr4_3:74104431-74104450 None:intergenic 15.0%
!! ATAGTGTAAATATTCTAAAT+AGG + chr4_3:74105430-74105449 None:intergenic 15.0%
!!! TTAAAAAACATTTCTTCTTT+TGG - chr4_3:74105906-74105925 Msa0662180:intron 15.0%
!!! CATTATTCATTCATATTTTA+GGG + chr4_3:74106317-74106336 None:intergenic 15.0%
!!! TCATTATTCATTCATATTTT+AGG + chr4_3:74106318-74106337 None:intergenic 15.0%
!!! TCTTTAATTCATTTTCTTAT+TGG - chr4_3:74106384-74106403 Msa0662180:intron 15.0%
!!! CTTTAATTCATTTTCTTATT+GGG - chr4_3:74106385-74106404 Msa0662180:intron 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG + chr4_3:74106553-74106572 None:intergenic 15.0%
!! GAAAAATGTTTGTATAGATT+AGG - chr4_3:74102460-74102479 Msa0662180:three_prime_UTR 20.0%
!! CCTGCATTATATAATAATTA+AGG + chr4_3:74102540-74102559 None:intergenic 20.0%
!! CCTTAATTATTATATAATGC+AGG - chr4_3:74102537-74102556 Msa0662180:three_prime_UTR 20.0%
!! TATAATATAGGGTAGAAATA+GGG + chr4_3:74103180-74103199 None:intergenic 20.0%
!! TTATAATATAGGGTAGAAAT+AGG + chr4_3:74103181-74103200 None:intergenic 20.0%
!!! GAACAACTTGTTATAATATA+GGG + chr4_3:74103191-74103210 None:intergenic 20.0%
!!! TGAACAACTTGTTATAATAT+AGG + chr4_3:74103192-74103211 None:intergenic 20.0%
!! TATAAAAAAAAGATAGGGAA+GGG + chr4_3:74103662-74103681 None:intergenic 20.0%
!! ATATAAAAAAAAGATAGGGA+AGG + chr4_3:74103663-74103682 None:intergenic 20.0%
!! CAATAAGTAAGTATATTGAA+AGG - chr4_3:74103822-74103841 Msa0662180:intron 20.0%
!!! TTCACATAACATTGATTAAA+AGG - chr4_3:74104242-74104261 Msa0662180:intron 20.0%
!! AAAAAATGAGATAAGATAAG+AGG - chr4_3:74104844-74104863 Msa0662180:intron 20.0%
!! AATAAGAAATGAGAAAAACA+AGG + chr4_3:74104999-74105018 None:intergenic 20.0%
!!! TTGTTTTTCTCATTTCTTAT+TGG - chr4_3:74104998-74105017 Msa0662180:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG + chr4_3:74105092-74105111 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG + chr4_3:74105143-74105162 None:intergenic 20.0%
!!! CATTTCTTTTAATTGACTAT+TGG - chr4_3:74105146-74105165 Msa0662180:intron 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr4_3:74105592-74105611 Msa0662180:intron 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG + chr4_3:74105976-74105995 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG + chr4_3:74105977-74105996 None:intergenic 20.0%
!! AACCATTGAAAAATTAGAAA+AGG - chr4_3:74106168-74106187 Msa0662180:intron 20.0%
!!! TACCTTTTCTAATTTTTCAA+TGG + chr4_3:74106173-74106192 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG - chr4_3:74106255-74106274 Msa0662180:intron 20.0%
!! AATATATGTCACATATTATG+TGG - chr4_3:74106691-74106710 Msa0662180:intron 20.0%
!! ATATATGTCACATATTATGT+GGG - chr4_3:74106692-74106711 Msa0662180:intron 20.0%
!! AATTCAATGTAATTACATGT+CGG - chr4_3:74106967-74106986 Msa0662180:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG + chr4_3:74107140-74107159 None:intergenic 20.0%
!! ATGATTGATGAGATATAATT+TGG - chr4_3:74107794-74107813 Msa0662180:CDS 20.0%
!! AAAATAAAAAAAACTCCTTC+CGG + chr4_3:74107915-74107934 None:intergenic 20.0%
!!! TATATCTTTTGTAAGTTACA+AGG - chr4_3:74107962-74107981 Msa0662180:five_prime_UTR 20.0%
!!! ATACAATTAGTATCATTTTG+AGG - chr4_3:74108062-74108081 Msa0662180:five_prime_UTR 20.0%
! AAAAAAGTGAAAGCTAAAAG+GGG + chr4_3:74102648-74102667 None:intergenic 25.0%
! GAAAAAAGTGAAAGCTAAAA+GGG + chr4_3:74102649-74102668 None:intergenic 25.0%
! AGAAAAAAGTGAAAGCTAAA+AGG + chr4_3:74102650-74102669 None:intergenic 25.0%
! TAATTAACGAACATGAAAGA+AGG - chr4_3:74102759-74102778 Msa0662180:three_prime_UTR 25.0%
!!! TATTCAACCCTTTATTTCTA+CGG - chr4_3:74102982-74103001 Msa0662180:three_prime_UTR 25.0%
! GTATTATCCGTAGAAATAAA+GGG + chr4_3:74102992-74103011 None:intergenic 25.0%
! AGTATTATCCGTAGAAATAA+AGG + chr4_3:74102993-74103012 None:intergenic 25.0%
!! TATTTCTACGGATAATACTT+TGG - chr4_3:74102994-74103013 Msa0662180:three_prime_UTR 25.0%
! TGATATCAGTTAACTTAAGT+GGG + chr4_3:74103239-74103258 None:intergenic 25.0%
! TTGATATCAGTTAACTTAAG+TGG + chr4_3:74103240-74103259 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG + chr4_3:74103450-74103469 None:intergenic 25.0%
! AAAATTAAAGCAAGAACAAG+AGG - chr4_3:74103589-74103608 Msa0662180:intron 25.0%
! TCTAGGCATTTGATATATAT+GGG + chr4_3:74103958-74103977 None:intergenic 25.0%
! ATCTAGGCATTTGATATATA+TGG + chr4_3:74103959-74103978 None:intergenic 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG - chr4_3:74103987-74104006 Msa0662180:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG - chr4_3:74104340-74104359 Msa0662180:intron 25.0%
! TTGATCTCCTTATAAAAATG+TGG - chr4_3:74104671-74104690 Msa0662180:intron 25.0%
!! CTCATTACCACATTTTTATA+AGG + chr4_3:74104681-74104700 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr4_3:74105011-74105030 Msa0662180:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr4_3:74105416-74105435 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr4_3:74105417-74105436 None:intergenic 25.0%
! TCAATTAGGTCAAGTAATAT+GGG - chr4_3:74105629-74105648 Msa0662180:intron 25.0%
!! TGAAGATACTTTTCTCAAAA+GGG - chr4_3:74105785-74105804 Msa0662180:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG + chr4_3:74106077-74106096 None:intergenic 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG - chr4_3:74106080-74106099 Msa0662180:intron 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG + chr4_3:74106084-74106103 None:intergenic 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG - chr4_3:74106083-74106102 Msa0662180:intron 25.0%
! TTCAATGGTTATTACTTACT+TGG + chr4_3:74106158-74106177 None:intergenic 25.0%
!! CAAATCAAAAAGTATGCATT+AGG - chr4_3:74106344-74106363 Msa0662180:intron 25.0%
! TCTTCATTTCACTTTCTATT+TGG - chr4_3:74106525-74106544 Msa0662180:intron 25.0%
!! GATGATTTTGTGTATATCTT+AGG + chr4_3:74106734-74106753 None:intergenic 25.0%
!!! GATTCATTGATTTTTGATGA+TGG + chr4_3:74107473-74107492 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG - chr4_3:74107499-74107518 Msa0662180:intron 25.0%
! GTCCATATCAAAAATATGTT+TGG + chr4_3:74107504-74107523 None:intergenic 25.0%
!!! ACATATTTTTGATATGGACA+TGG - chr4_3:74107505-74107524 Msa0662180:intron 25.0%
!!! ATTTTGATCATAGTCTAGAT+AGG + chr4_3:74107626-74107645 None:intergenic 25.0%
! TATATAAAATAGAACAAGGG+AGG - chr4_3:74107645-74107664 Msa0662180:intron 25.0%
! ATATAAAATAGAACAAGGGA+GGG - chr4_3:74107646-74107665 Msa0662180:intron 25.0%
! TTTCATTTGACATTGTGTTA+AGG - chr4_3:74107845-74107864 Msa0662180:CDS 25.0%
! TTCATTTGACATTGTGTTAA+GGG - chr4_3:74107846-74107865 Msa0662180:CDS 25.0%
! AGAACATCAAAAAGAACAAA+AGG + chr4_3:74108133-74108152 None:intergenic 25.0%
TTTGTATAGATTAGGGAGAA+GGG - chr4_3:74102468-74102487 Msa0662180:three_prime_UTR 30.0%
TGTCATATGAGATATTCTAG+TGG + chr4_3:74102698-74102717 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG + chr4_3:74102967-74102986 None:intergenic 30.0%
ATATCAGTTAACTTAAGTGG+GGG + chr4_3:74103237-74103256 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG + chr4_3:74103238-74103257 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG - chr4_3:74103289-74103308 Msa0662180:CDS 30.0%
! ACTTACTTATTGTCACTTCA+GGG + chr4_3:74103814-74103833 None:intergenic 30.0%
! TACTTACTTATTGTCACTTC+AGG + chr4_3:74103815-74103834 None:intergenic 30.0%
!! AACTTTCTTAGTCTTGTTCA+GGG + chr4_3:74103984-74104003 None:intergenic 30.0%
!! AAACTTTCTTAGTCTTGTTC+AGG + chr4_3:74103985-74104004 None:intergenic 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG - chr4_3:74103990-74104009 Msa0662180:intron 30.0%
! CTACTGCACACAATTATTTT+GGG + chr4_3:74104108-74104127 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG + chr4_3:74104163-74104182 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG - chr4_3:74104339-74104358 Msa0662180:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr4_3:74105024-74105043 Msa0662180:intron 30.0%
AGAAAAATAGAGTCAAAGCA+TGG + chr4_3:74105460-74105479 None:intergenic 30.0%
GTCAATTAGGTCAAGTAATA+TGG - chr4_3:74105628-74105647 Msa0662180:intron 30.0%
TTTCCATTTGAGAAAAAGAC+AGG - chr4_3:74105757-74105776 Msa0662180:intron 30.0%
!!! CTTTTGAGAAAAGTATCTTC+AGG + chr4_3:74105786-74105805 None:intergenic 30.0%
! CTGAAGATACTTTTCTCAAA+AGG - chr4_3:74105784-74105803 Msa0662180:intron 30.0%
! GAAGATACTTTTCTCAAAAG+GGG - chr4_3:74105786-74105805 Msa0662180:intron 30.0%
! TCACATTGCAATTCTTTTTG+TGG - chr4_3:74106040-74106059 Msa0662180:intron 30.0%
TTACTTGGAAAAAACCATTC+TGG + chr4_3:74106143-74106162 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG - chr4_3:74106182-74106201 Msa0662180:intron 30.0%
TTCTTATTGGGATAACCAAT+AGG - chr4_3:74106397-74106416 Msa0662180:intron 30.0%
AAGGAAACATATTCAATGCT+TGG + chr4_3:74106645-74106664 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG + chr4_3:74106684-74106703 None:intergenic 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG + chr4_3:74107165-74107184 None:intergenic 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG - chr4_3:74107202-74107221 Msa0662180:intron 30.0%
GTAAGTCCTGCAAATTAATA+AGG + chr4_3:74107211-74107230 None:intergenic 30.0%
!! TATTTTTGATATGGACATGG+TGG - chr4_3:74107508-74107527 Msa0662180:intron 30.0%
TATAACCAAACTAATCAAGC+GGG + chr4_3:74107762-74107781 None:intergenic 30.0%
CTATAACCAAACTAATCAAG+CGG + chr4_3:74107763-74107782 None:intergenic 30.0%
GTTTGGTTATAGGTTTCTTA+TGG - chr4_3:74107771-74107790 Msa0662180:CDS 30.0%
TTTGTAAGTTACAAGGAACA+TGG - chr4_3:74107969-74107988 Msa0662180:five_prime_UTR 30.0%
GTTTGTATAGATTAGGGAGA+AGG - chr4_3:74102467-74102486 Msa0662180:three_prime_UTR 35.0%
GATATTCTAGTGGAAGAAGA+GGG + chr4_3:74102688-74102707 None:intergenic 35.0%
AGATATTCTAGTGGAAGAAG+AGG + chr4_3:74102689-74102708 None:intergenic 35.0%
TTAACGAACATGAAAGAAGG+TGG - chr4_3:74102762-74102781 Msa0662180:three_prime_UTR 35.0%
TGAACATTAGCAAACTTGTG+AGG + chr4_3:74102894-74102913 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG - chr4_3:74102903-74102922 Msa0662180:three_prime_UTR 35.0%
TGTATGGGTGACATTAAATC+TGG - chr4_3:74103085-74103104 Msa0662180:CDS 35.0%
GTATGGGTGACATTAAATCT+GGG - chr4_3:74103086-74103105 Msa0662180:CDS 35.0%
AATATAGGGTAGAAATAGGG+TGG + chr4_3:74103177-74103196 None:intergenic 35.0%
! GATCTATTTGATGGCTATGT+GGG - chr4_3:74103620-74103639 Msa0662180:intron 35.0%
! ATCTATTTGATGGCTATGTG+GGG - chr4_3:74103621-74103640 Msa0662180:intron 35.0%
! CCTACTGCACACAATTATTT+TGG + chr4_3:74104109-74104128 None:intergenic 35.0%
CCAAAATAATTGTGTGCAGT+AGG - chr4_3:74104106-74104125 Msa0662180:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG - chr4_3:74104346-74104365 Msa0662180:intron 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG - chr4_3:74104347-74104366 Msa0662180:intron 35.0%
CTACTCAATTTCAGCTACAA+TGG - chr4_3:74104575-74104594 Msa0662180:intron 35.0%
! AATGATAATAGATGGTGTCG+GGG + chr4_3:74104603-74104622 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG + chr4_3:74104604-74104623 None:intergenic 35.0%
GCAATGATAATAGATGGTGT+CGG + chr4_3:74104605-74104624 None:intergenic 35.0%
TTCGCTGCAATGATAATAGA+TGG + chr4_3:74104611-74104630 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr4_3:74105247-74105266 Msa0662180:intron 35.0%
GTGACCAAACCAAAATTCTT+TGG - chr4_3:74105319-74105338 Msa0662180:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG + chr4_3:74105326-74105345 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG - chr4_3:74105325-74105344 Msa0662180:intron 35.0%
TAGAAGAATAAGGATGTGTG+GGG + chr4_3:74105383-74105402 None:intergenic 35.0%
GTAGAAGAATAAGGATGTGT+GGG + chr4_3:74105384-74105403 None:intergenic 35.0%
AGTAGAAGAATAAGGATGTG+TGG + chr4_3:74105385-74105404 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr4_3:74105412-74105431 None:intergenic 35.0%
TTAGGTCAAGTAATATGGGA+CGG - chr4_3:74105633-74105652 Msa0662180:intron 35.0%
!!! GGAGGGAGTAATATTTTTTG+AGG - chr4_3:74105654-74105673 Msa0662180:intron 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG + chr4_3:74105763-74105782 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG - chr4_3:74105929-74105948 Msa0662180:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr4_3:74105930-74105949 Msa0662180:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG + chr4_3:74106135-74106154 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG + chr4_3:74106139-74106158 None:intergenic 35.0%
AGATGAGACAGACCTAATAT+TGG + chr4_3:74106270-74106289 None:intergenic 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG - chr4_3:74106272-74106291 Msa0662180:intron 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG + chr4_3:74106508-74106527 None:intergenic 35.0%
CAATATTAGACAACTTCACG+TGG + chr4_3:74106610-74106629 None:intergenic 35.0%
TGGACTTTGACAGTGAAATA+AGG + chr4_3:74106664-74106683 None:intergenic 35.0%
TACATATGTGGGCATTTATG+GGG + chr4_3:74106827-74106846 None:intergenic 35.0%
GTACATATGTGGGCATTTAT+GGG + chr4_3:74106828-74106847 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG - chr4_3:74106827-74106846 Msa0662180:intron 35.0%
TCATCTAACCGTACATATGT+GGG + chr4_3:74106838-74106857 None:intergenic 35.0%
ATGTAATTACATGTCGGTCT+CGG - chr4_3:74106973-74106992 Msa0662180:intron 35.0%
TGTGTTTATAGGTCTTTGCA+GGG - chr4_3:74107022-74107041 Msa0662180:intron 35.0%
! TCCAAAATGATGATGCAGTT+TGG + chr4_3:74107406-74107425 None:intergenic 35.0%
!! CGCTTGATTAGTTTGGTTAT+AGG - chr4_3:74107761-74107780 Msa0662180:CDS 35.0%
AAGGTTATAGGTTTGGATTG+TGG - chr4_3:74107870-74107889 Msa0662180:exon 35.0%
TTTGGATTGTGGATTCTTCA+TGG - chr4_3:74107881-74107900 Msa0662180:five_prime_UTR 35.0%
ATTCTTCATGGCAAAAAGAC+CGG - chr4_3:74107893-74107912 Msa0662180:five_prime_UTR 35.0%
TAAGTTACAAGGAACATGGA+TGG - chr4_3:74107973-74107992 Msa0662180:five_prime_UTR 35.0%
! TTGCTGCTTCTTTGTAATGT+TGG - chr4_3:74108030-74108049 Msa0662180:five_prime_UTR 35.0%
! TGCTGCTTCTTTGTAATGTT+GGG - chr4_3:74108031-74108050 Msa0662180:five_prime_UTR 35.0%
! AAACAAAGAGAGTGTGGTGT+AGG + chr4_3:74102622-74102641 None:intergenic 40.0%
GGGAAAAAACAAAGAGAGTG+TGG + chr4_3:74102628-74102647 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG - chr4_3:74102932-74102951 Msa0662180:three_prime_UTR 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_3:74103025-74103044 Msa0662180:three_prime_UTR 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_3:74103026-74103045 Msa0662180:three_prime_UTR 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_3:74103037-74103056 Msa0662180:three_prime_UTR 40.0%
TTAAATCTGGGCCACACAAA+GGG - chr4_3:74103038-74103057 Msa0662180:three_prime_UTR 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_3:74103037-74103056 Msa0662180:three_prime_UTR 40.0%
GTGGCTCAGATTTAATGTCA+CGG - chr4_3:74103130-74103149 Msa0662180:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG - chr4_3:74103593-74103612 Msa0662180:intron 40.0%
TAAAGCAAGAACAAGAGGCA+GGG - chr4_3:74103594-74103613 Msa0662180:intron 40.0%
! GGATCTATTTGATGGCTATG+TGG - chr4_3:74103619-74103638 Msa0662180:intron 40.0%
GTATTGTTCTGATTCACCTC+AGG - chr4_3:74104036-74104055 Msa0662180:intron 40.0%
CAACTGTCATAGTTATCCTG+AGG + chr4_3:74104055-74104074 None:intergenic 40.0%
TTGGGTAGAGGGAGTAAATT+AGG - chr4_3:74104358-74104377 Msa0662180:intron 40.0%
AGTTAACCAATTAACGCCAC+CGG + chr4_3:74104884-74104903 None:intergenic 40.0%
! ACACAAGATTTTCTCGGTCA+AGG + chr4_3:74105178-74105197 None:intergenic 40.0%
TTGACCGAGAAAATCTTGTG+TGG - chr4_3:74105177-74105196 Msa0662180:intron 40.0%
! AGGACCACACAAGATTTTCT+CGG + chr4_3:74105184-74105203 None:intergenic 40.0%
AGAGAGAAAATGGAGAAGAG+AGG - chr4_3:74105257-74105276 Msa0662180:intron 40.0%
AAGGAAGAGAAACACTTGTG+TGG + chr4_3:74105352-74105371 None:intergenic 40.0%
AATAAGGATGTGTGGGGATA+TGG + chr4_3:74105377-74105396 None:intergenic 40.0%
CATACGTGACAGAGTCAATT+AGG - chr4_3:74105615-74105634 Msa0662180:intron 40.0%
AAGGGGAAGACACAAGTTAA+TGG - chr4_3:74105803-74105822 Msa0662180:intron 40.0%
!! TTTTAGGGATCACATGCACA+TGG + chr4_3:74106302-74106321 None:intergenic 40.0%
CCACGTTTACAAACTCCTAT+TGG + chr4_3:74106415-74106434 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG - chr4_3:74106412-74106431 Msa0662180:intron 40.0%
ACTTTCTATTTGGCGCCATT+AGG - chr4_3:74106535-74106554 Msa0662180:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG + chr4_3:74106597-74106616 None:intergenic 40.0%
AGAAATGAATGGTGACAGGT+GGG + chr4_3:74106774-74106793 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG - chr4_3:74106781-74106800 Msa0662180:intron 40.0%
CGTACATATGTGGGCATTTA+TGG + chr4_3:74106829-74106848 None:intergenic 40.0%
GTCATCTAACCGTACATATG+TGG + chr4_3:74106839-74106858 None:intergenic 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG - chr4_3:74107011-74107030 Msa0662180:intron 40.0%
CTGTGTTTATAGGTCTTTGC+AGG - chr4_3:74107021-74107040 Msa0662180:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG - chr4_3:74107225-74107244 Msa0662180:intron 40.0%
CACATCAATCTGTTGCTGAA+GGG + chr4_3:74107330-74107349 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG - chr4_3:74107343-74107362 Msa0662180:intron 40.0%
! GCCAAACTGCATCATCATTT+TGG - chr4_3:74107402-74107421 Msa0662180:intron 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG - chr4_3:74107413-74107432 Msa0662180:intron 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG - chr4_3:74107414-74107433 Msa0662180:intron 40.0%
! TTTTGATATGGACATGGTGG+TGG - chr4_3:74107511-74107530 Msa0662180:intron 40.0%
TCACCACATTGAATCACCAT+AGG + chr4_3:74107546-74107565 None:intergenic 40.0%
! AACTAGAACTCTAGAAGCAG+TGG - chr4_3:74107720-74107739 Msa0662180:CDS 40.0%
TTGACATTGTGTTAAGGGCA+AGG - chr4_3:74107851-74107870 Msa0662180:CDS 40.0%
TGTGTTAAGGGCAAGGTTAT+AGG - chr4_3:74107858-74107877 Msa0662180:exon 40.0%
TAAGGGCAAGGTTATAGGTT+TGG - chr4_3:74107863-74107882 Msa0662180:exon 40.0%
AGGAACATGGATGGATCTAT+TGG - chr4_3:74107982-74108001 Msa0662180:five_prime_UTR 40.0%
AAAAGAGCAAAGCAGCAGCA+TGG + chr4_3:74102513-74102532 None:intergenic 45.0%
CAATGTAGGGACTACTAGGA+AGG + chr4_3:74102579-74102598 None:intergenic 45.0%
AGAGCAATGTAGGGACTACT+AGG + chr4_3:74102583-74102602 None:intergenic 45.0%
! CTATGGTGGAGAGCAATGTA+GGG + chr4_3:74102592-74102611 None:intergenic 45.0%
! ACTATGGTGGAGAGCAATGT+AGG + chr4_3:74102593-74102612 None:intergenic 45.0%
!! GTGTAGGAAATGGACTATGG+TGG + chr4_3:74102606-74102625 None:intergenic 45.0%
!! GTGGTGTAGGAAATGGACTA+TGG + chr4_3:74102609-74102628 None:intergenic 45.0%
! AGAGAGTGTGGTGTAGGAAA+TGG + chr4_3:74102616-74102635 None:intergenic 45.0%
ACGAACATGAAAGAAGGTGG+AGG - chr4_3:74102765-74102784 Msa0662180:three_prime_UTR 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_3:74103033-74103052 None:intergenic 45.0%
ACACAACACAACCCTTTGTG+TGG + chr4_3:74103052-74103071 None:intergenic 45.0%
ACACAAAGGGTTGTGTTGTG+TGG - chr4_3:74103051-74103070 Msa0662180:three_prime_UTR 45.0%
GTCACCCATACAACACATCT+GGG + chr4_3:74103077-74103096 None:intergenic 45.0%
TGTCACCCATACAACACATC+TGG + chr4_3:74103078-74103097 None:intergenic 45.0%
ACACAACACACACCTTTGTG+TGG + chr4_3:74103112-74103131 None:intergenic 45.0%
! ACACAAAGGTGTGTGTTGTG+TGG - chr4_3:74103111-74103130 Msa0662180:CDS 45.0%
GTAGAAATAGGGTGGCACTT+TGG + chr4_3:74103169-74103188 None:intergenic 45.0%
AAAGCAAGAACAAGAGGCAG+GGG - chr4_3:74103595-74103614 Msa0662180:intron 45.0%
! AAAGATAGGGAAGGGCATGT+GGG + chr4_3:74103654-74103673 None:intergenic 45.0%
! AAAAGATAGGGAAGGGCATG+TGG + chr4_3:74103655-74103674 None:intergenic 45.0%
!! AGTCTTGTTCAGGGACATCT+AGG + chr4_3:74103975-74103994 None:intergenic 45.0%
AGAGGAATGCAAGCAAACTC+CGG - chr4_3:74104862-74104881 Msa0662180:intron 45.0%
GAGAAAATCTTGTGTGGTCC+TGG - chr4_3:74105183-74105202 Msa0662180:intron 45.0%
AAATACCACTTGTGTGGACC+AGG + chr4_3:74105204-74105223 None:intergenic 45.0%
TGGTCCACACAAGTGGTATT+TGG - chr4_3:74105203-74105222 Msa0662180:intron 45.0%
GTGACCAAATACCACTTGTG+TGG + chr4_3:74105210-74105229 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr4_3:74105281-74105300 Msa0662180:intron 45.0%
! GGACCAGGACCAAAGAATTT+TGG + chr4_3:74105331-74105350 None:intergenic 45.0%
ACGGAGGGAGTAGAAGAATA+AGG + chr4_3:74105393-74105412 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr4_3:74105637-74105656 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr4_3:74105637-74105656 Msa0662180:intron 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG + chr4_3:74106112-74106131 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG - chr4_3:74106126-74106145 Msa0662180:intron 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG + chr4_3:74106130-74106149 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG + chr4_3:74106217-74106236 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG + chr4_3:74106228-74106247 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG + chr4_3:74106446-74106465 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG + chr4_3:74106447-74106466 None:intergenic 45.0%
! CAGGTGGGGAGAATTTTGTA+TGG + chr4_3:74106759-74106778 None:intergenic 45.0%
GAAATGAATGGTGACAGGTG+GGG + chr4_3:74106773-74106792 None:intergenic 45.0%
GAGAAATGAATGGTGACAGG+TGG + chr4_3:74106775-74106794 None:intergenic 45.0%
GTGGAGAAATGAATGGTGAC+AGG + chr4_3:74106778-74106797 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG - chr4_3:74106780-74106799 Msa0662180:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG - chr4_3:74106782-74106801 Msa0662180:intron 45.0%
TATGTGGGCATTTATGGGGA+CGG + chr4_3:74106823-74106842 None:intergenic 45.0%
GACTTACCTGAGCATCAAAG+AGG - chr4_3:74107224-74107243 Msa0662180:intron 45.0%
CTTACCTGAGCATCAAAGAG+GGG - chr4_3:74107226-74107245 Msa0662180:intron 45.0%
GCACATCAATCTGTTGCTGA+AGG + chr4_3:74107331-74107350 None:intergenic 45.0%
AGCTTGTGCTACAGCCAATT+GGG + chr4_3:74107360-74107379 None:intergenic 45.0%
TTGAATCACCATAGGCAGCT+TGG + chr4_3:74107538-74107557 None:intergenic 45.0%
CTGCCTATGGTGATTCAATG+TGG - chr4_3:74107540-74107559 Msa0662180:intron 45.0%
! TAGAACTCTAGAAGCAGTGG+CGG - chr4_3:74107723-74107742 Msa0662180:CDS 45.0%
AAACTAATCAAGCGGGCGAA+CGG + chr4_3:74107755-74107774 None:intergenic 45.0%
TTCATGGCAAAAAGACCGGA+AGG - chr4_3:74107897-74107916 Msa0662180:five_prime_UTR 45.0%
!! TAATATATAAAAAAAAGATA+GGG + chr4_3:74103667-74103686 None:intergenic 5.0%
!! ATAATATATAAAAAAAAGAT+AGG + chr4_3:74103668-74103687 None:intergenic 5.0%
AGGAAGGAAGGAAGGAAGAG+CGG + chr4_3:74102563-74102582 None:intergenic 50.0%
GGACTACTAGGAAGGAAGGA+AGG + chr4_3:74102571-74102590 None:intergenic 50.0%
GTAGGGACTACTAGGAAGGA+AGG + chr4_3:74102575-74102594 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG - chr4_3:74102780-74102799 Msa0662180:three_prime_UTR 50.0%
AGAAGCTTGCATGCAGCACA+AGG + chr4_3:74102816-74102835 None:intergenic 50.0%
ACTTGTGAGGCTCATCAGCA+GGG + chr4_3:74102881-74102900 None:intergenic 50.0%
AACTTGTGAGGCTCATCAGC+AGG + chr4_3:74102882-74102901 None:intergenic 50.0%
TGTGGCCCAGATGTGTTGTA+TGG - chr4_3:74103069-74103088 Msa0662180:exon 50.0%
GTGGCCCAGATGTGTTGTAT+GGG - chr4_3:74103070-74103089 Msa0662180:exon 50.0%
! AAGATAGGGAAGGGCATGTG+GGG + chr4_3:74103653-74103672 None:intergenic 50.0%
CACTTGTCACAACGACACGT+TGG + chr4_3:74104642-74104661 None:intergenic 50.0%
CAAACTCCGGTGGCGTTAAT+TGG - chr4_3:74104875-74104894 Msa0662180:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr4_3:74105346-74105365 None:intergenic 50.0%
GATGTGTGGGGATATGGTCA+AGG + chr4_3:74105371-74105390 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr4_3:74105636-74105655 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr4_3:74105636-74105655 Msa0662180:intron 50.0%
TTAACATGTGCCCTAAGGGC+AGG - chr4_3:74105934-74105953 Msa0662180:intron 50.0%
TAACATGTGCCCTAAGGGCA+GGG - chr4_3:74105935-74105954 Msa0662180:intron 50.0%
TAACATGTGCCCTGCCCTTA+GGG + chr4_3:74105947-74105966 None:intergenic 50.0%
TTAACATGTGCCCTGCCCTT+AGG + chr4_3:74105948-74105967 None:intergenic 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG + chr4_3:74106119-74106138 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG + chr4_3:74106125-74106144 None:intergenic 50.0%
GTATTGCCCCCCAAAAGTCA+GGG - chr4_3:74106434-74106453 Msa0662180:intron 50.0%
! TGCATGACCCTGACTTTTGG+GGG + chr4_3:74106444-74106463 None:intergenic 50.0%
! GTGCATGACCCTGACTTTTG+GGG + chr4_3:74106445-74106464 None:intergenic 50.0%
CCCCAAGGTGGAGAAATGAA+TGG + chr4_3:74106785-74106804 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG + chr4_3:74106797-74106816 None:intergenic 50.0%
GACATGGGAAAATCTCCCCA+AGG + chr4_3:74106800-74106819 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG + chr4_3:74106815-74106834 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG + chr4_3:74106822-74106841 None:intergenic 50.0%
TTAGATGACCCTGCAGGACA+GGG - chr4_3:74106850-74106869 Msa0662180:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG - chr4_3:74106990-74107009 Msa0662180:intron 50.0%
AGAGTGAGAGACCCTGTGTA+TGG - chr4_3:74107284-74107303 Msa0662180:intron 50.0%
AGACCCTGTGTATGGTTGTG+TGG - chr4_3:74107292-74107311 Msa0662180:intron 50.0%
GACCCTGTGTATGGTTGTGT+GGG - chr4_3:74107293-74107312 Msa0662180:intron 50.0%
ACCCTGTGTATGGTTGTGTG+GGG - chr4_3:74107294-74107313 Msa0662180:intron 50.0%
CAGCTTGTGCTACAGCCAAT+TGG + chr4_3:74107361-74107380 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG - chr4_3:74107361-74107380 Msa0662180:intron 50.0%
! GTTCGCCCGCTTGATTAGTT+TGG - chr4_3:74107754-74107773 Msa0662180:CDS 50.0%
ATTAGGGAGAAGGGCCCACA+TGG - chr4_3:74102477-74102496 Msa0662180:three_prime_UTR 55.0%
ATGGCACCACCACTCCATGT+GGG + chr4_3:74102494-74102513 None:intergenic 55.0%
CTTGCATGCAGCACAAGGTG+AGG + chr4_3:74102811-74102830 None:intergenic 55.0%
GGCTCATCAGCAGGGAAGTA+AGG + chr4_3:74102873-74102892 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG - chr4_3:74103611-74103630 Msa0662180:intron 55.0%
GGAATGCAAGCAAACTCCGG+TGG - chr4_3:74104865-74104884 Msa0662180:intron 55.0%
GGTATTGCCCCCCAAAAGTC+AGG - chr4_3:74106433-74106452 Msa0662180:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG + chr4_3:74106443-74106462 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG + chr4_3:74106816-74106835 None:intergenic 55.0%
GTACGGTTAGATGACCCTGC+AGG - chr4_3:74106844-74106863 Msa0662180:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG - chr4_3:74106849-74106868 Msa0662180:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG - chr4_3:74106851-74106870 Msa0662180:intron 55.0%
CATCATACCCCTGTCCTGCA+GGG + chr4_3:74106861-74106880 None:intergenic 55.0%
CGGTCTCGGACACTGAAAGT+TGG - chr4_3:74106987-74107006 Msa0662180:intron 55.0%
CGGACACTGAAAGTTGGAGG+AGG - chr4_3:74106993-74107012 Msa0662180:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG + chr4_3:74107233-74107252 None:intergenic 55.0%
AGGGGATGCAGTGAGTAGCA+TGG - chr4_3:74107244-74107263 Msa0662180:intron 55.0%
CCCCCACACAACCATACACA+GGG + chr4_3:74107298-74107317 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG - chr4_3:74107295-74107314 Msa0662180:intron 55.0%
AAGCTGAGGCAGTGCACCTA+AGG - chr4_3:74107375-74107394 Msa0662180:intron 55.0%
AGCTGAGGCAGTGCACCTAA+GGG - chr4_3:74107376-74107395 Msa0662180:intron 55.0%
ATGCAGTTTGGCGCACCCTT+AGG + chr4_3:74107394-74107413 None:intergenic 55.0%
! AACTCTAGAAGCAGTGGCGG+CGG - chr4_3:74107726-74107745 Msa0662180:CDS 55.0%
CATGGCACCACCACTCCATG+TGG + chr4_3:74102495-74102514 None:intergenic 60.0%
GCAAGAACAAGAGGCAGGGG+CGG - chr4_3:74103598-74103617 Msa0662180:intron 60.0%
GTGGTCCTGGTCCACACAAG+TGG - chr4_3:74105196-74105215 Msa0662180:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG + chr4_3:74106862-74106881 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG + chr4_3:74107299-74107318 None:intergenic 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG - chr4_3:74107527-74107546 Msa0662180:intron 60.0%
GGAGAAGGGCCCACATGGAG+TGG - chr4_3:74102482-74102501 Msa0662180:three_prime_UTR 65.0%
GAAGGGCCCACATGGAGTGG+TGG - chr4_3:74102485-74102504 Msa0662180:three_prime_UTR 65.0%
TCTAGAAGCAGTGGCGGCGG+CGG - chr4_3:74107729-74107748 Msa0662180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 74102460 74108181 74102460 ID=Msa0662180;Name=Msa0662180
chr4_3 mRNA 74102460 74108181 74102460 ID=Msa0662180-mRNA-1;Parent=Msa0662180;Name=Msa0662180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=311|1|1|1|1|1|2|616|174
chr4_3 exon 74102460 74103417 74102460 ID=Msa0662180-mRNA-1:exon:22342;Parent=Msa0662180-mRNA-1
chr4_3 exon 74107688 74108181 74107688 ID=Msa0662180-mRNA-1:exon:22341;Parent=Msa0662180-mRNA-1
chr4_3 five_prime_UTR 74107871 74108181 74107871 ID=Msa0662180-mRNA-1:five_prime_utr;Parent=Msa0662180-mRNA-1
chr4_3 CDS 74107688 74107870 74107688 ID=Msa0662180-mRNA-1:cds;Parent=Msa0662180-mRNA-1
chr4_3 CDS 74103076 74103417 74103076 ID=Msa0662180-mRNA-1:cds;Parent=Msa0662180-mRNA-1
chr4_3 three_prime_UTR 74102460 74103075 74102460 ID=Msa0662180-mRNA-1:three_prime_utr;Parent=Msa0662180-mRNA-1
Gene Sequence

>Msa0662180

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>Msa0662180

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW*