AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693110 MtrunA17_Chr4g0043421 98.276 174 3 0 1 174 1 174 3.68e-129 359
Msa0693110 MtrunA17_Chr2g0311601 82.400 125 20 1 1 125 1 123 8.54e-74 218
Msa0693110 MtrunA17_Chr5g0437571 73.874 111 29 0 11 121 2 112 1.17e-57 178
Msa0693110 MtrunA17_Chr3g0114061 61.224 147 48 3 5 146 2 144 3.51e-57 176
Msa0693110 MtrunA17_Chr3g0106101 65.000 120 42 0 11 130 3 122 3.88e-57 177
Msa0693110 MtrunA17_Chr4g0030001 66.667 111 36 1 14 123 23 133 1.18e-50 161
Msa0693110 MtrunA17_Chr6g0449641 55.797 138 57 2 14 151 8 141 2.12e-49 156
Msa0693110 MtrunA17_Chr1g0200201 67.290 107 35 0 16 122 73 179 8.56e-49 157
Msa0693110 MtrunA17_Chr3g0129071 62.162 111 42 0 14 124 46 156 9.94e-48 155
Msa0693110 MtrunA17_Chr5g0438091 62.727 110 41 0 5 114 29 138 1.45e-47 153
Msa0693110 MtrunA17_Chr3g0117121 65.714 105 36 0 14 118 9 113 2.34e-47 152
Msa0693110 MtrunA17_Chr4g0058651 65.385 104 36 0 14 117 10 113 3.78e-47 152
Msa0693110 MtrunA17_Chr7g0227511 64.078 103 37 0 14 116 10 112 4.80e-47 151
Msa0693110 MtrunA17_Chr6g0449651 61.905 105 40 0 14 118 66 170 1.22e-46 151
Msa0693110 MtrunA17_Chr5g0432451 62.097 124 46 1 14 137 42 164 5.03e-44 145
Msa0693110 MtrunA17_Chr3g0113891 62.376 101 38 0 12 112 11 111 2.70e-42 139
Msa0693110 MtrunA17_Chr3g0115431 60.784 102 40 0 13 114 7 108 6.58e-42 139
Msa0693110 MtrunA17_Chr5g0402611 63.366 101 37 0 14 114 7 107 9.62e-42 142
Msa0693110 MtrunA17_Chr5g0437401 60.396 101 40 0 12 112 8 108 1.84e-41 137
Msa0693110 MtrunA17_Chr7g0260971 56.481 108 46 1 11 117 10 117 1.23e-40 136
Msa0693110 MtrunA17_Chr8g0353981 65.347 101 35 0 14 114 6 106 1.68e-40 136
Msa0693110 MtrunA17_Chr3g0097221 60.396 101 40 0 14 114 6 106 5.20e-40 137
Msa0693110 MtrunA17_Chr1g0184281 52.137 117 55 1 1 116 1 117 4.52e-39 132
Msa0693110 MtrunA17_Chr8g0351721 54.867 113 48 2 2 113 7 117 5.83e-37 127
Msa0693110 MtrunA17_Chr7g0225111 51.402 107 52 0 14 120 4 110 1.31e-36 123
Msa0693110 MtrunA17_Chr8g0351701 56.566 99 42 1 15 112 23 121 1.06e-35 124
Msa0693110 MtrunA17_Chr5g0444351 53.535 99 46 0 16 114 6 104 1.14e-35 121
Msa0693110 MtrunA17_Chr7g0245871 56.000 100 43 1 15 113 27 126 8.01e-35 122
Msa0693110 MtrunA17_Chr6g0460951 49.074 108 54 1 14 120 39 146 1.68e-34 120
Msa0693110 MtrunA17_Chr7g0261031 52.830 106 49 1 11 115 4 109 1.57e-33 118
Msa0693110 MtrunA17_Chr1g0184271 52.941 102 47 1 15 115 12 113 9.45e-33 116
Msa0693110 MtrunA17_Chr5g0435641 50.495 101 49 1 11 110 3 103 1.26e-31 112
Msa0693110 MtrunA17_Chr7g0245861 51.923 104 44 3 1 101 1 101 2.55e-29 105
Msa0693110 MtrunA17_Chr8g0374591 42.982 114 65 0 15 128 8 121 5.34e-29 103
Msa0693110 MtrunA17_Chr8g0374601 40.152 132 74 2 15 141 26 157 6.64e-29 107
Msa0693110 MtrunA17_Chr4g0059901 48.000 100 52 0 9 108 4 103 9.69e-29 107
Msa0693110 MtrunA17_Chr6g0452691 35.821 134 77 3 16 141 10 142 1.05e-26 99.8
Msa0693110 MtrunA17_Chr6g0460941 47.727 88 45 1 15 101 7 94 2.08e-26 96.3
Msa0693110 MtrunA17_Chr6g0452671 34.783 138 87 2 16 153 12 146 2.10e-26 99.4
Msa0693110 MtrunA17_Chr8g0342351 40.385 104 62 0 16 119 13 116 2.51e-25 98.2
Msa0693110 MtrunA17_Chr2g0330201 38.462 104 64 0 11 114 15 118 5.19e-25 98.2
Msa0693110 MtrunA17_Chr6g0452661 47.500 80 41 1 16 94 10 89 1.08e-24 96.3
Msa0693110 MtrunA17_Chr8g0374581 46.602 103 54 1 15 116 8 110 1.16e-24 95.5
Msa0693110 MtrunA17_Chr4g0055441 43.617 94 48 2 16 104 3 96 2.84e-23 90.1
Msa0693110 MtrunA17_Chr2g0326051 60.938 64 25 0 60 123 5 68 4.61e-23 88.6
Msa0693110 MtrunA17_Chr5g0439111 33.974 156 83 5 16 154 10 162 5.60e-22 88.6
Msa0693110 MtrunA17_Chr4g0040831 37.000 100 63 0 11 110 11 110 8.10e-22 87.4
Msa0693110 MtrunA17_Chr2g0326041 65.385 52 18 0 10 61 28 79 3.86e-21 82.8
Msa0693110 MtrunA17_Chr4g0046201 38.372 86 53 0 16 101 7 92 7.57e-18 78.6
Msa0693110 MtrunA17_Chr2g0326821 30.392 102 67 3 15 114 2 101 4.75e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693110 AT1G31320.1 74.713 174 40 2 1 174 1 170 2.72e-73 218
Msa0693110 AT2G30130.1 75.229 109 27 0 13 121 6 114 1.05e-57 179
Msa0693110 AT1G16530.1 54.237 177 55 6 6 174 5 163 3.47e-57 177
Msa0693110 AT5G63090.4 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0693110 AT5G63090.3 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0693110 AT5G63090.2 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0693110 AT5G63090.1 64.286 112 40 0 14 125 10 121 1.41e-49 158
Msa0693110 AT1G07900.1 63.636 110 40 0 14 123 32 141 2.55e-48 155
Msa0693110 AT2G28500.1 62.162 111 42 0 14 124 54 164 4.15e-47 154
Msa0693110 AT2G30340.1 57.377 122 50 1 11 130 48 169 4.75e-47 154
Msa0693110 AT2G30340.2 57.851 121 49 1 12 130 50 170 5.49e-47 154
Msa0693110 AT3G27650.1 64.356 101 36 0 14 114 38 138 4.96e-46 148
Msa0693110 AT2G40470.2 62.281 114 43 0 14 127 19 132 2.88e-45 148
Msa0693110 AT2G40470.1 62.281 114 43 0 14 127 44 157 7.33e-45 147
Msa0693110 AT2G23660.2 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0693110 AT2G23660.3 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0693110 AT2G23660.1 61.905 105 40 0 12 116 2 106 5.65e-44 148
Msa0693110 AT5G66870.1 62.136 103 39 0 12 114 4 106 1.11e-41 142
Msa0693110 AT3G26660.1 54.867 113 49 1 16 126 6 118 7.82e-41 134
Msa0693110 AT3G26620.1 59.596 99 40 0 16 114 6 104 1.17e-40 134
Msa0693110 AT1G65620.1 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0693110 AT1G65620.4 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0693110 AT1G65620.3 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0693110 AT1G65620.5 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0693110 AT1G65620.2 65.347 101 35 0 14 114 8 108 6.88e-40 134
Msa0693110 AT3G11090.1 53.226 124 51 1 12 135 8 124 8.20e-40 133
Msa0693110 AT2G42430.1 52.174 115 54 1 1 114 1 115 8.67e-39 132
Msa0693110 AT3G03760.1 54.630 108 48 1 14 120 50 157 2.36e-37 130
Msa0693110 AT2G42440.1 46.565 131 69 1 11 140 3 133 4.50e-36 125
Msa0693110 AT4G00220.1 56.731 104 44 1 18 120 20 123 4.93e-36 125
Msa0693110 AT2G31310.1 52.830 106 49 1 11 115 3 108 6.27e-36 124
Msa0693110 AT4G00210.1 48.344 151 73 3 11 157 7 156 1.03e-35 124
Msa0693110 AT2G45410.1 59.794 97 38 1 18 113 19 115 2.44e-33 117
Msa0693110 AT2G45420.1 52.885 104 48 1 18 120 40 143 6.66e-33 118
Msa0693110 AT5G06080.1 54.639 97 43 1 13 108 5 101 1.36e-32 115
Msa0693110 AT3G58190.1 50.980 102 49 1 15 115 11 112 1.09e-31 114
Msa0693110 AT3G50510.1 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0693110 AT3G50510.2 47.059 102 54 0 13 114 10 111 1.67e-28 105
Msa0693110 AT1G72980.1 43.269 104 59 0 11 114 9 112 5.26e-28 104
Msa0693110 AT3G13850.1 42.453 106 61 0 16 121 37 142 1.77e-27 104
Msa0693110 AT3G47870.1 42.453 106 61 0 9 114 30 135 5.85e-27 103
Msa0693110 AT5G35900.1 42.424 99 57 0 16 114 6 104 1.69e-24 95.1
Msa0693110 AT1G06280.1 38.462 91 56 0 16 106 25 115 1.39e-19 82.0
Msa0693110 AT2G19820.1 39.583 96 57 1 14 108 11 106 2.05e-19 79.7
Msa0693110 AT5G15060.1 40.449 89 49 2 1 86 3 90 1.02e-17 75.9
Msa0693110 AT1G36000.1 28.814 118 84 0 11 128 5 122 1.42e-14 67.0
Msa0693110 AT4G22700.1 35.238 105 64 3 12 114 2 104 3.72e-14 67.4
Msa0693110 AT2G19510.1 28.571 98 70 0 11 108 5 102 1.50e-12 61.6
Msa0693110 AT3G27940.3 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0693110 AT3G27940.1 32.432 74 50 0 13 86 3 76 4.88e-11 58.5
Msa0693110 AT3G27940.2 32.432 74 50 0 13 86 3 76 4.88e-11 58.5

Find 93 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4_4:-61928792 Msa0693110:CDS
GTTTGGTTATAGGTTTCTTA+TGG 0.279365 4_4:-61928423 Msa0693110:three_prime_UTR
TTCATTTGACATTGTGTTAA+GGG 0.294642 4_4:-61928348 Msa0693110:three_prime_UTR
CCTGCATTATATAATAATTA+AGG 0.294947 4_4:+61933657 None:intergenic
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4_4:-61933291 Msa0693110:CDS
TGCTGCTTCTTTGTAATGTT+GGG 0.310273 4_4:-61928163 Msa0693110:three_prime_UTR
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4_4:+61928836 None:intergenic
ATGATTGATGAGATATAATT+TGG 0.320770 4_4:-61928400 Msa0693110:three_prime_UTR
CGCTTGATTAGTTTGGTTAT+AGG 0.334957 4_4:-61928433 Msa0693110:three_prime_UTR
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4_4:+61928751 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4_4:+61928837 None:intergenic
TGTGTTAAGGGCAAGGTTAT+AGG 0.358958 4_4:-61928336 Msa0693110:three_prime_UTR
GTTCGCCCGCTTGATTAGTT+TGG 0.365439 4_4:-61928440 Msa0693110:three_prime_UTR
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4_4:+61928803 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4_4:-61933262 Msa0693110:intron
TTTGGATTGTGGATTCTTCA+TGG 0.376459 4_4:-61928313 Msa0693110:three_prime_UTR
TTTCATTTGACATTGTGTTA+AGG 0.388396 4_4:-61928349 Msa0693110:three_prime_UTR
TTGCTGCTTCTTTGTAATGT+TGG 0.390235 4_4:-61928164 Msa0693110:three_prime_UTR
AGGAACATGGATGGATCTAT+TGG 0.397456 4_4:-61928212 Msa0693110:three_prime_UTR
TAAGGGCAAGGTTATAGGTT+TGG 0.401482 4_4:-61928331 Msa0693110:three_prime_UTR
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4_4:-61928819 Msa0693110:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4_4:+61933324 None:intergenic
AGAGAGTGTGGTGTAGGAAA+TGG 0.436476 4_4:+61933581 None:intergenic
TCCAAAATGATGATGCAGTT+TGG 0.439033 4_4:+61928791 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4_4:+61933315 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4_4:+61928964 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4_4:-61928751 Msa0693110:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4_4:+61928738 None:intergenic
TCTAGAAGCAGTGGCGGCGG+CGG 0.476603 4_4:-61928465 Msa0693110:three_prime_UTR
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4_4:-61928901 Msa0693110:CDS
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4_4:+61928743 None:intergenic
GTTTGTATAGATTAGGGAGA+AGG 0.505034 4_4:-61933727 Msa0693110:five_prime_UTR
ACTATGGTGGAGAGCAATGT+AGG 0.513474 4_4:+61933604 None:intergenic
CCTTAATTATTATATAATGC+AGG 0.515982 4_4:-61933657 Msa0693110:five_prime_UTR
AGATATTCTAGTGGAAGAAG+AGG 0.521031 4_4:+61933508 None:intergenic
TTGACATTGTGTTAAGGGCA+AGG 0.521941 4_4:-61928343 Msa0693110:three_prime_UTR
AAACAAAGAGAGTGTGGTGT+AGG 0.532357 4_4:+61933575 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4_4:+61928742 None:intergenic
AGAGCAATGTAGGGACTACT+AGG 0.535702 4_4:+61933614 None:intergenic
GAAGGGCCCACATGGAGTGG+TGG 0.540327 4_4:-61933709 Msa0693110:five_prime_UTR
TTGAATCACCATAGGCAGCT+TGG 0.540807 4_4:+61928659 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4_4:-61928851 Msa0693110:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4_4:-61928902 Msa0693110:CDS
AACTCTAGAAGCAGTGGCGG+CGG 0.552581 4_4:-61928468 Msa0693110:three_prime_UTR
TATATAAAATAGAACAAGGG+AGG 0.553832 4_4:-61928549 Msa0693110:three_prime_UTR
TTTGTATAGATTAGGGAGAA+GGG 0.555419 4_4:-61933726 Msa0693110:five_prime_UTR
TAATTAACGAACATGAAAGA+AGG 0.557964 4_4:-61933435 Msa0693110:exon
GCACATCAATCTGTTGCTGA+AGG 0.564578 4_4:+61928866 None:intergenic
AAGGTTATAGGTTTGGATTG+TGG 0.568703 4_4:-61928324 Msa0693110:three_prime_UTR
ATTAGGGAGAAGGGCCCACA+TGG 0.568783 4_4:-61933717 Msa0693110:five_prime_UTR
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4_4:-61928667 Msa0693110:CDS
GATATTCTAGTGGAAGAAGA+GGG 0.573147 4_4:+61933509 None:intergenic
AAACTAATCAAGCGGGCGAA+CGG 0.576829 4_4:+61928442 None:intergenic
TAAGTTACAAGGAACATGGA+TGG 0.577180 4_4:-61928221 Msa0693110:three_prime_UTR
CAATGTAGGGACTACTAGGA+AGG 0.577613 4_4:+61933618 None:intergenic
GTAGGGACTACTAGGAAGGA+AGG 0.577858 4_4:+61933622 None:intergenic
GGAGAAGGGCCCACATGGAG+TGG 0.583930 4_4:-61933712 Msa0693110:five_prime_UTR
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4_4:+61933386 None:intergenic
GTGGTGTAGGAAATGGACTA+TGG 0.586327 4_4:+61933588 None:intergenic
TTTGTAAGTTACAAGGAACA+TGG 0.587208 4_4:-61928225 Msa0693110:three_prime_UTR
CTATGGTGGAGAGCAATGTA+GGG 0.587811 4_4:+61933605 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4_4:+61933381 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4_4:-61928910 Msa0693110:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4_4:-61928969 Msa0693110:CDS
AACTAGAACTCTAGAAGCAG+TGG 0.602973 4_4:-61928474 Msa0693110:three_prime_UTR
CACATCAATCTGTTGCTGAA+GGG 0.604124 4_4:+61928867 None:intergenic
GGACTACTAGGAAGGAAGGA+AGG 0.605170 4_4:+61933626 None:intergenic
AAAATATATAAAATAGAACA+AGG 0.607211 4_4:-61928553 Msa0693110:three_prime_UTR
GACTTACCTGAGCATCAAAG+AGG 0.607217 4_4:-61928970 Msa0693110:CDS
ATATAAAATAGAACAAGGGA+GGG 0.609288 4_4:-61928548 Msa0693110:three_prime_UTR
TAGAACTCTAGAAGCAGTGG+CGG 0.612185 4_4:-61928471 Msa0693110:three_prime_UTR
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4_4:-61928818 Msa0693110:CDS
CATGGCACCACCACTCCATG+TGG 0.614429 4_4:+61933702 None:intergenic
CTATAACCAAACTAATCAAG+CGG 0.614673 4_4:+61928434 None:intergenic
AAAAGAGCAAAGCAGCAGCA+TGG 0.618195 4_4:+61933684 None:intergenic
TTAACGAACATGAAAGAAGG+TGG 0.619833 4_4:-61933432 Msa0693110:exon
TATAACCAAACTAATCAAGC+GGG 0.626817 4_4:+61928435 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4_4:+61933303 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4_4:-61928899 Msa0693110:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4_4:+61928651 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4_4:-61928900 Msa0693110:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4_4:-61928950 Msa0693110:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4_4:-61933429 Msa0693110:exon
GTGTAGGAAATGGACTATGG+TGG 0.639929 4_4:+61933591 None:intergenic
TGTCATATGAGATATTCTAG+TGG 0.642349 4_4:+61933499 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4_4:-61928833 Msa0693110:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4_4:-61933414 Msa0693110:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4_4:+61933316 None:intergenic
AGGAAGGAAGGAAGGAAGAG+CGG 0.659063 4_4:+61933634 None:intergenic
ATGGCACCACCACTCCATGT+GGG 0.666308 4_4:+61933703 None:intergenic
AAATATATAAAATAGAACAA+GGG 0.693924 4_4:-61928552 Msa0693110:three_prime_UTR
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4_4:-61928968 Msa0693110:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4_4:-61928654 Msa0693110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACTACATTATAATATT+AGG - chr4_4:61928849-61928868 Msa0693110:CDS 10.0%
!!! TTTAAAATTTTGATACATTA+AGG - chr4_4:61929495-61929514 Msa0693110:intron 10.0%
!!! TTAAAATTTTGATACATTAA+GGG - chr4_4:61929496-61929515 Msa0693110:intron 10.0%
!! TTTAGAAAAGAAAAAAAAAA+TGG - chr4_4:61931273-61931292 Msa0693110:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG - chr4_4:61931403-61931422 Msa0693110:intron 10.0%
!!! TATAGTAATTTTAATTTTAG+TGG + chr4_4:61933160-61933179 None:intergenic 10.0%
!! AAAATATATAAAATAGAACA+AGG - chr4_4:61933216-61933235 Msa0693110:intron 10.0%
!! AAATATATAAAATAGAACAA+GGG - chr4_4:61933217-61933236 Msa0693110:intron 10.0%
!! AAAAATGTTTGTATAGATTA+GGG - chr4_4:61928036-61928055 Msa0693110:three_prime_UTR 15.0%
!! TATGTATAATATTAGATAGA+TGG + chr4_4:61929077-61929096 None:intergenic 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG - chr4_4:61929435-61929454 Msa0693110:intron 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG - chr4_4:61929436-61929455 Msa0693110:intron 15.0%
!!! ATATTTTCTTAATAAGCAAA+TGG + chr4_4:61929654-61929673 None:intergenic 15.0%
!! AGAAATAAATATGAACAATT+TGG + chr4_4:61929759-61929778 None:intergenic 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG - chr4_4:61929877-61929896 Msa0693110:intron 15.0%
!! CTGCAAAATTATTATTAATT+GGG + chr4_4:61929977-61929996 None:intergenic 15.0%
!! ACTGCAAAATTATTATTAAT+TGG + chr4_4:61929978-61929997 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG + chr4_4:61930005-61930024 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG + chr4_4:61930006-61930025 None:intergenic 15.0%
!! ATAGTGTAAATATTCTAAAT+AGG + chr4_4:61931005-61931024 None:intergenic 15.0%
!!! TTAAAAAACATTTCTTCTTT+TGG - chr4_4:61931481-61931500 Msa0693110:intron 15.0%
!!! CATTATTCATTCATATTTTA+GGG + chr4_4:61931892-61931911 None:intergenic 15.0%
!!! TCATTATTCATTCATATTTT+AGG + chr4_4:61931893-61931912 None:intergenic 15.0%
!!! TCTTTAATTCATTTTCTTAT+TGG - chr4_4:61931959-61931978 Msa0693110:intron 15.0%
!!! CTTTAATTCATTTTCTTATT+GGG - chr4_4:61931960-61931979 Msa0693110:intron 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG + chr4_4:61932128-61932147 None:intergenic 15.0%
!! GAAAAATGTTTGTATAGATT+AGG - chr4_4:61928035-61928054 Msa0693110:three_prime_UTR 20.0%
!! CCTGCATTATATAATAATTA+AGG + chr4_4:61928115-61928134 None:intergenic 20.0%
!! CCTTAATTATTATATAATGC+AGG - chr4_4:61928112-61928131 Msa0693110:three_prime_UTR 20.0%
!! TATAATATAGGGTAGAAATA+GGG + chr4_4:61928755-61928774 None:intergenic 20.0%
!! TTATAATATAGGGTAGAAAT+AGG + chr4_4:61928756-61928775 None:intergenic 20.0%
!!! GAACAACTTGTTATAATATA+GGG + chr4_4:61928766-61928785 None:intergenic 20.0%
!!! TGAACAACTTGTTATAATAT+AGG + chr4_4:61928767-61928786 None:intergenic 20.0%
!! TATAAAAAAAAGATAGGGAA+GGG + chr4_4:61929237-61929256 None:intergenic 20.0%
!! ATATAAAAAAAAGATAGGGA+AGG + chr4_4:61929238-61929257 None:intergenic 20.0%
!! CAATAAGTAAGTATATTGAA+AGG - chr4_4:61929397-61929416 Msa0693110:intron 20.0%
!!! TTCACATAACATTGATTAAA+AGG - chr4_4:61929817-61929836 Msa0693110:intron 20.0%
!! AAAAAATGAGATAAGATAAG+AGG - chr4_4:61930419-61930438 Msa0693110:intron 20.0%
!! AATAAGAAATGAGAAAAACA+AGG + chr4_4:61930574-61930593 None:intergenic 20.0%
!!! TTGTTTTTCTCATTTCTTAT+TGG - chr4_4:61930573-61930592 Msa0693110:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG + chr4_4:61930667-61930686 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG + chr4_4:61930718-61930737 None:intergenic 20.0%
!!! CATTTCTTTTAATTGACTAT+TGG - chr4_4:61930721-61930740 Msa0693110:intron 20.0%
!!! TTAAGTTTAAAATTGTGCAT+TGG - chr4_4:61931167-61931186 Msa0693110:intron 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG + chr4_4:61931551-61931570 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG + chr4_4:61931552-61931571 None:intergenic 20.0%
!! AACCATTGAAAAATTAGAAA+AGG - chr4_4:61931743-61931762 Msa0693110:intron 20.0%
!!! TACCTTTTCTAATTTTTCAA+TGG + chr4_4:61931748-61931767 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG - chr4_4:61931830-61931849 Msa0693110:intron 20.0%
!! AATATATGTCACATATTATG+TGG - chr4_4:61932266-61932285 Msa0693110:intron 20.0%
!! ATATATGTCACATATTATGT+GGG - chr4_4:61932267-61932286 Msa0693110:intron 20.0%
!! AATTCAATGTAATTACATGT+CGG - chr4_4:61932542-61932561 Msa0693110:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG + chr4_4:61932715-61932734 None:intergenic 20.0%
!! ATGATTGATGAGATATAATT+TGG - chr4_4:61933369-61933388 Msa0693110:CDS 20.0%
!! AAAATAAAAAAAACTCCTTC+CGG + chr4_4:61933490-61933509 None:intergenic 20.0%
!!! TATATCTTTTGTAAGTTACA+AGG - chr4_4:61933537-61933556 Msa0693110:five_prime_UTR 20.0%
!!! ATACAATTAGTATCATTTTG+AGG - chr4_4:61933637-61933656 Msa0693110:five_prime_UTR 20.0%
! AAAAAAGTGAAAGCTAAAAG+GGG + chr4_4:61928223-61928242 None:intergenic 25.0%
! GAAAAAAGTGAAAGCTAAAA+GGG + chr4_4:61928224-61928243 None:intergenic 25.0%
! AGAAAAAAGTGAAAGCTAAA+AGG + chr4_4:61928225-61928244 None:intergenic 25.0%
! TAATTAACGAACATGAAAGA+AGG - chr4_4:61928334-61928353 Msa0693110:three_prime_UTR 25.0%
!!! TATTCAACCCTTTATTTCTA+CGG - chr4_4:61928557-61928576 Msa0693110:three_prime_UTR 25.0%
! GTATTATCCGTAGAAATAAA+GGG + chr4_4:61928567-61928586 None:intergenic 25.0%
! AGTATTATCCGTAGAAATAA+AGG + chr4_4:61928568-61928587 None:intergenic 25.0%
!! TATTTCTACGGATAATACTT+TGG - chr4_4:61928569-61928588 Msa0693110:three_prime_UTR 25.0%
! TGATATCAGTTAACTTAAGT+GGG + chr4_4:61928814-61928833 None:intergenic 25.0%
! TTGATATCAGTTAACTTAAG+TGG + chr4_4:61928815-61928834 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG + chr4_4:61929025-61929044 None:intergenic 25.0%
! AAAATTAAAGCAAGAACAAG+AGG - chr4_4:61929164-61929183 Msa0693110:intron 25.0%
! TCTAGGCATTTGATATATAT+GGG + chr4_4:61929533-61929552 None:intergenic 25.0%
! ATCTAGGCATTTGATATATA+TGG + chr4_4:61929534-61929553 None:intergenic 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG - chr4_4:61929562-61929581 Msa0693110:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG - chr4_4:61929915-61929934 Msa0693110:intron 25.0%
! TTGATCTCCTTATAAAAATG+TGG - chr4_4:61930246-61930265 Msa0693110:intron 25.0%
!! CTCATTACCACATTTTTATA+AGG + chr4_4:61930256-61930275 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr4_4:61930586-61930605 Msa0693110:intron 25.0%
! CTAAATAGGTCAAGTAATAT+GGG + chr4_4:61930991-61931010 None:intergenic 25.0%
! TCTAAATAGGTCAAGTAATA+TGG + chr4_4:61930992-61931011 None:intergenic 25.0%
! TCAATTAGGTCAAGTAATAT+GGG - chr4_4:61931204-61931223 Msa0693110:intron 25.0%
!! TGAAGATACTTTTCTCAAAA+GGG - chr4_4:61931360-61931379 Msa0693110:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG + chr4_4:61931652-61931671 None:intergenic 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG - chr4_4:61931655-61931674 Msa0693110:intron 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG + chr4_4:61931659-61931678 None:intergenic 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG - chr4_4:61931658-61931677 Msa0693110:intron 25.0%
! TTCAATGGTTATTACTTACT+TGG + chr4_4:61931733-61931752 None:intergenic 25.0%
!! CAAATCAAAAAGTATGCATT+AGG - chr4_4:61931919-61931938 Msa0693110:intron 25.0%
! TCTTCATTTCACTTTCTATT+TGG - chr4_4:61932100-61932119 Msa0693110:intron 25.0%
!! GATGATTTTGTGTATATCTT+AGG + chr4_4:61932309-61932328 None:intergenic 25.0%
!!! GATTCATTGATTTTTGATGA+TGG + chr4_4:61933048-61933067 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG - chr4_4:61933074-61933093 Msa0693110:intron 25.0%
! GTCCATATCAAAAATATGTT+TGG + chr4_4:61933079-61933098 None:intergenic 25.0%
!!! ACATATTTTTGATATGGACA+TGG - chr4_4:61933080-61933099 Msa0693110:intron 25.0%
!!! ATTTTGATCATAGTCTAGAT+AGG + chr4_4:61933201-61933220 None:intergenic 25.0%
! TATATAAAATAGAACAAGGG+AGG - chr4_4:61933220-61933239 Msa0693110:intron 25.0%
! ATATAAAATAGAACAAGGGA+GGG - chr4_4:61933221-61933240 Msa0693110:intron 25.0%
! TTTCATTTGACATTGTGTTA+AGG - chr4_4:61933420-61933439 Msa0693110:CDS 25.0%
! TTCATTTGACATTGTGTTAA+GGG - chr4_4:61933421-61933440 Msa0693110:CDS 25.0%
! AGAACATCAAAAAGAACAAA+AGG + chr4_4:61933708-61933727 None:intergenic 25.0%
TTTGTATAGATTAGGGAGAA+GGG - chr4_4:61928043-61928062 Msa0693110:three_prime_UTR 30.0%
TGTCATATGAGATATTCTAG+TGG + chr4_4:61928273-61928292 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG + chr4_4:61928542-61928561 None:intergenic 30.0%
ATATCAGTTAACTTAAGTGG+GGG + chr4_4:61928812-61928831 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG + chr4_4:61928813-61928832 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG - chr4_4:61928864-61928883 Msa0693110:CDS 30.0%
! ACTTACTTATTGTCACTTCA+GGG + chr4_4:61929389-61929408 None:intergenic 30.0%
! TACTTACTTATTGTCACTTC+AGG + chr4_4:61929390-61929409 None:intergenic 30.0%
!! AACTTTCTTAGTCTTGTTCA+GGG + chr4_4:61929559-61929578 None:intergenic 30.0%
!! AAACTTTCTTAGTCTTGTTC+AGG + chr4_4:61929560-61929579 None:intergenic 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG - chr4_4:61929565-61929584 Msa0693110:intron 30.0%
! CTACTGCACACAATTATTTT+GGG + chr4_4:61929683-61929702 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG + chr4_4:61929738-61929757 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG - chr4_4:61929914-61929933 Msa0693110:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr4_4:61930599-61930618 Msa0693110:intron 30.0%
AGAAAAATAGAGTCAAAGCA+TGG + chr4_4:61931035-61931054 None:intergenic 30.0%
GTCAATTAGGTCAAGTAATA+TGG - chr4_4:61931203-61931222 Msa0693110:intron 30.0%
TTTCCATTTGAGAAAAAGAC+AGG - chr4_4:61931332-61931351 Msa0693110:intron 30.0%
!!! CTTTTGAGAAAAGTATCTTC+AGG + chr4_4:61931361-61931380 None:intergenic 30.0%
! CTGAAGATACTTTTCTCAAA+AGG - chr4_4:61931359-61931378 Msa0693110:intron 30.0%
! GAAGATACTTTTCTCAAAAG+GGG - chr4_4:61931361-61931380 Msa0693110:intron 30.0%
! TCACATTGCAATTCTTTTTG+TGG - chr4_4:61931615-61931634 Msa0693110:intron 30.0%
TTACTTGGAAAAAACCATTC+TGG + chr4_4:61931718-61931737 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG - chr4_4:61931757-61931776 Msa0693110:intron 30.0%
TTCTTATTGGGATAACCAAT+AGG - chr4_4:61931972-61931991 Msa0693110:intron 30.0%
AAGGAAACATATTCAATGCT+TGG + chr4_4:61932220-61932239 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG + chr4_4:61932259-61932278 None:intergenic 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG + chr4_4:61932740-61932759 None:intergenic 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG - chr4_4:61932777-61932796 Msa0693110:intron 30.0%
GTAAGTCCTGCAAATTAATA+AGG + chr4_4:61932786-61932805 None:intergenic 30.0%
!! TATTTTTGATATGGACATGG+TGG - chr4_4:61933083-61933102 Msa0693110:intron 30.0%
TATAACCAAACTAATCAAGC+GGG + chr4_4:61933337-61933356 None:intergenic 30.0%
CTATAACCAAACTAATCAAG+CGG + chr4_4:61933338-61933357 None:intergenic 30.0%
GTTTGGTTATAGGTTTCTTA+TGG - chr4_4:61933346-61933365 Msa0693110:CDS 30.0%
TTTGTAAGTTACAAGGAACA+TGG - chr4_4:61933544-61933563 Msa0693110:five_prime_UTR 30.0%
GTTTGTATAGATTAGGGAGA+AGG - chr4_4:61928042-61928061 Msa0693110:three_prime_UTR 35.0%
GATATTCTAGTGGAAGAAGA+GGG + chr4_4:61928263-61928282 None:intergenic 35.0%
AGATATTCTAGTGGAAGAAG+AGG + chr4_4:61928264-61928283 None:intergenic 35.0%
TTAACGAACATGAAAGAAGG+TGG - chr4_4:61928337-61928356 Msa0693110:three_prime_UTR 35.0%
TGAACATTAGCAAACTTGTG+AGG + chr4_4:61928469-61928488 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG - chr4_4:61928478-61928497 Msa0693110:three_prime_UTR 35.0%
TGTATGGGTGACATTAAATC+TGG - chr4_4:61928660-61928679 Msa0693110:CDS 35.0%
GTATGGGTGACATTAAATCT+GGG - chr4_4:61928661-61928680 Msa0693110:CDS 35.0%
AATATAGGGTAGAAATAGGG+TGG + chr4_4:61928752-61928771 None:intergenic 35.0%
! GATCTATTTGATGGCTATGT+GGG - chr4_4:61929195-61929214 Msa0693110:intron 35.0%
! ATCTATTTGATGGCTATGTG+GGG - chr4_4:61929196-61929215 Msa0693110:intron 35.0%
! CCTACTGCACACAATTATTT+TGG + chr4_4:61929684-61929703 None:intergenic 35.0%
CCAAAATAATTGTGTGCAGT+AGG - chr4_4:61929681-61929700 Msa0693110:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG - chr4_4:61929921-61929940 Msa0693110:intron 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG - chr4_4:61929922-61929941 Msa0693110:intron 35.0%
CTACTCAATTTCAGCTACAA+TGG - chr4_4:61930150-61930169 Msa0693110:intron 35.0%
! AATGATAATAGATGGTGTCG+GGG + chr4_4:61930178-61930197 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG + chr4_4:61930179-61930198 None:intergenic 35.0%
GCAATGATAATAGATGGTGT+CGG + chr4_4:61930180-61930199 None:intergenic 35.0%
TTCGCTGCAATGATAATAGA+TGG + chr4_4:61930186-61930205 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr4_4:61930822-61930841 Msa0693110:intron 35.0%
GTGACCAAACCAAAATTCTT+TGG - chr4_4:61930894-61930913 Msa0693110:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG + chr4_4:61930901-61930920 None:intergenic 35.0%
AAACCAAAATTCTTTGGTCC+TGG - chr4_4:61930900-61930919 Msa0693110:intron 35.0%
TAGAAGAATAAGGATGTGTG+GGG + chr4_4:61930958-61930977 None:intergenic 35.0%
GTAGAAGAATAAGGATGTGT+GGG + chr4_4:61930959-61930978 None:intergenic 35.0%
AGTAGAAGAATAAGGATGTG+TGG + chr4_4:61930960-61930979 None:intergenic 35.0%
ATAGGTCAAGTAATATGGGA+CGG + chr4_4:61930987-61931006 None:intergenic 35.0%
TTAGGTCAAGTAATATGGGA+CGG - chr4_4:61931208-61931227 Msa0693110:intron 35.0%
!!! GGAGGGAGTAATATTTTTTG+AGG - chr4_4:61931229-61931248 Msa0693110:intron 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG + chr4_4:61931338-61931357 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG - chr4_4:61931504-61931523 Msa0693110:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr4_4:61931505-61931524 Msa0693110:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG + chr4_4:61931710-61931729 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG + chr4_4:61931714-61931733 None:intergenic 35.0%
AGATGAGACAGACCTAATAT+TGG + chr4_4:61931845-61931864 None:intergenic 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG - chr4_4:61931847-61931866 Msa0693110:intron 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG + chr4_4:61932083-61932102 None:intergenic 35.0%
CAATATTAGACAACTTCACG+TGG + chr4_4:61932185-61932204 None:intergenic 35.0%
TGGACTTTGACAGTGAAATA+AGG + chr4_4:61932239-61932258 None:intergenic 35.0%
TACATATGTGGGCATTTATG+GGG + chr4_4:61932402-61932421 None:intergenic 35.0%
GTACATATGTGGGCATTTAT+GGG + chr4_4:61932403-61932422 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG - chr4_4:61932402-61932421 Msa0693110:intron 35.0%
TCATCTAACCGTACATATGT+GGG + chr4_4:61932413-61932432 None:intergenic 35.0%
ATGTAATTACATGTCGGTCT+CGG - chr4_4:61932548-61932567 Msa0693110:intron 35.0%
TGTGTTTATAGGTCTTTGCA+GGG - chr4_4:61932597-61932616 Msa0693110:intron 35.0%
! TCCAAAATGATGATGCAGTT+TGG + chr4_4:61932981-61933000 None:intergenic 35.0%
!! CGCTTGATTAGTTTGGTTAT+AGG - chr4_4:61933336-61933355 Msa0693110:CDS 35.0%
AAGGTTATAGGTTTGGATTG+TGG - chr4_4:61933445-61933464 Msa0693110:exon 35.0%
TTTGGATTGTGGATTCTTCA+TGG - chr4_4:61933456-61933475 Msa0693110:five_prime_UTR 35.0%
ATTCTTCATGGCAAAAAGAC+CGG - chr4_4:61933468-61933487 Msa0693110:five_prime_UTR 35.0%
TAAGTTACAAGGAACATGGA+TGG - chr4_4:61933548-61933567 Msa0693110:five_prime_UTR 35.0%
! TTGCTGCTTCTTTGTAATGT+TGG - chr4_4:61933605-61933624 Msa0693110:five_prime_UTR 35.0%
! TGCTGCTTCTTTGTAATGTT+GGG - chr4_4:61933606-61933625 Msa0693110:five_prime_UTR 35.0%
! AAACAAAGAGAGTGTGGTGT+AGG + chr4_4:61928197-61928216 None:intergenic 40.0%
GGGAAAAAACAAAGAGAGTG+TGG + chr4_4:61928203-61928222 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG - chr4_4:61928507-61928526 Msa0693110:three_prime_UTR 40.0%
TGTCACCGTGACATTAAATC+TGG - chr4_4:61928600-61928619 Msa0693110:three_prime_UTR 40.0%
GTCACCGTGACATTAAATCT+GGG - chr4_4:61928601-61928620 Msa0693110:three_prime_UTR 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_4:61928612-61928631 Msa0693110:three_prime_UTR 40.0%
TTAAATCTGGGCCACACAAA+GGG - chr4_4:61928613-61928632 Msa0693110:three_prime_UTR 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_4:61928612-61928631 Msa0693110:three_prime_UTR 40.0%
GTGGCTCAGATTTAATGTCA+CGG - chr4_4:61928705-61928724 Msa0693110:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG - chr4_4:61929168-61929187 Msa0693110:intron 40.0%
TAAAGCAAGAACAAGAGGCA+GGG - chr4_4:61929169-61929188 Msa0693110:intron 40.0%
! GGATCTATTTGATGGCTATG+TGG - chr4_4:61929194-61929213 Msa0693110:intron 40.0%
GTATTGTTCTGATTCACCTC+AGG - chr4_4:61929611-61929630 Msa0693110:intron 40.0%
CAACTGTCATAGTTATCCTG+AGG + chr4_4:61929630-61929649 None:intergenic 40.0%
TTGGGTAGAGGGAGTAAATT+AGG - chr4_4:61929933-61929952 Msa0693110:intron 40.0%
AGTTAACCAATTAACGCCAC+CGG + chr4_4:61930459-61930478 None:intergenic 40.0%
! ACACAAGATTTTCTCGGTCA+AGG + chr4_4:61930753-61930772 None:intergenic 40.0%
TTGACCGAGAAAATCTTGTG+TGG - chr4_4:61930752-61930771 Msa0693110:intron 40.0%
! AGGACCACACAAGATTTTCT+CGG + chr4_4:61930759-61930778 None:intergenic 40.0%
AGAGAGAAAATGGAGAAGAG+AGG - chr4_4:61930832-61930851 Msa0693110:intron 40.0%
AAGGAAGAGAAACACTTGTG+TGG + chr4_4:61930927-61930946 None:intergenic 40.0%
AATAAGGATGTGTGGGGATA+TGG + chr4_4:61930952-61930971 None:intergenic 40.0%
CATACGTGACAGAGTCAATT+AGG - chr4_4:61931190-61931209 Msa0693110:intron 40.0%
AAGGGGAAGACACAAGTTAA+TGG - chr4_4:61931378-61931397 Msa0693110:intron 40.0%
!! TTTTAGGGATCACATGCACA+TGG + chr4_4:61931877-61931896 None:intergenic 40.0%
CCACGTTTACAAACTCCTAT+TGG + chr4_4:61931990-61932009 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG - chr4_4:61931987-61932006 Msa0693110:intron 40.0%
ACTTTCTATTTGGCGCCATT+AGG - chr4_4:61932110-61932129 Msa0693110:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG + chr4_4:61932172-61932191 None:intergenic 40.0%
AGAAATGAATGGTGACAGGT+GGG + chr4_4:61932349-61932368 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG - chr4_4:61932356-61932375 Msa0693110:intron 40.0%
CGTACATATGTGGGCATTTA+TGG + chr4_4:61932404-61932423 None:intergenic 40.0%
GTCATCTAACCGTACATATG+TGG + chr4_4:61932414-61932433 None:intergenic 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG - chr4_4:61932586-61932605 Msa0693110:intron 40.0%
CTGTGTTTATAGGTCTTTGC+AGG - chr4_4:61932596-61932615 Msa0693110:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG - chr4_4:61932800-61932819 Msa0693110:intron 40.0%
CACATCAATCTGTTGCTGAA+GGG + chr4_4:61932905-61932924 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG - chr4_4:61932918-61932937 Msa0693110:intron 40.0%
! GCCAAACTGCATCATCATTT+TGG - chr4_4:61932977-61932996 Msa0693110:intron 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG - chr4_4:61932988-61933007 Msa0693110:intron 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG - chr4_4:61932989-61933008 Msa0693110:intron 40.0%
! TTTTGATATGGACATGGTGG+TGG - chr4_4:61933086-61933105 Msa0693110:intron 40.0%
TCACCACATTGAATCACCAT+AGG + chr4_4:61933121-61933140 None:intergenic 40.0%
! AACTAGAACTCTAGAAGCAG+TGG - chr4_4:61933295-61933314 Msa0693110:CDS 40.0%
TTGACATTGTGTTAAGGGCA+AGG - chr4_4:61933426-61933445 Msa0693110:CDS 40.0%
TGTGTTAAGGGCAAGGTTAT+AGG - chr4_4:61933433-61933452 Msa0693110:exon 40.0%
TAAGGGCAAGGTTATAGGTT+TGG - chr4_4:61933438-61933457 Msa0693110:exon 40.0%
AGGAACATGGATGGATCTAT+TGG - chr4_4:61933557-61933576 Msa0693110:five_prime_UTR 40.0%
AAAAGAGCAAAGCAGCAGCA+TGG + chr4_4:61928088-61928107 None:intergenic 45.0%
CAATGTAGGGACTACTAGGA+AGG + chr4_4:61928154-61928173 None:intergenic 45.0%
AGAGCAATGTAGGGACTACT+AGG + chr4_4:61928158-61928177 None:intergenic 45.0%
! CTATGGTGGAGAGCAATGTA+GGG + chr4_4:61928167-61928186 None:intergenic 45.0%
! ACTATGGTGGAGAGCAATGT+AGG + chr4_4:61928168-61928187 None:intergenic 45.0%
!! GTGTAGGAAATGGACTATGG+TGG + chr4_4:61928181-61928200 None:intergenic 45.0%
!! GTGGTGTAGGAAATGGACTA+TGG + chr4_4:61928184-61928203 None:intergenic 45.0%
! AGAGAGTGTGGTGTAGGAAA+TGG + chr4_4:61928191-61928210 None:intergenic 45.0%
ACGAACATGAAAGAAGGTGG+AGG - chr4_4:61928340-61928359 Msa0693110:three_prime_UTR 45.0%
GTGGCCCAGATTTAATGTCA+CGG + chr4_4:61928608-61928627 None:intergenic 45.0%
ACACAACACAACCCTTTGTG+TGG + chr4_4:61928627-61928646 None:intergenic 45.0%
ACACAAAGGGTTGTGTTGTG+TGG - chr4_4:61928626-61928645 Msa0693110:three_prime_UTR 45.0%
GTCACCCATACAACACATCT+GGG + chr4_4:61928652-61928671 None:intergenic 45.0%
TGTCACCCATACAACACATC+TGG + chr4_4:61928653-61928672 None:intergenic 45.0%
ACACAACACACACCTTTGTG+TGG + chr4_4:61928687-61928706 None:intergenic 45.0%
! ACACAAAGGTGTGTGTTGTG+TGG - chr4_4:61928686-61928705 Msa0693110:CDS 45.0%
GTAGAAATAGGGTGGCACTT+TGG + chr4_4:61928744-61928763 None:intergenic 45.0%
AAAGCAAGAACAAGAGGCAG+GGG - chr4_4:61929170-61929189 Msa0693110:intron 45.0%
! AAAGATAGGGAAGGGCATGT+GGG + chr4_4:61929229-61929248 None:intergenic 45.0%
! AAAAGATAGGGAAGGGCATG+TGG + chr4_4:61929230-61929249 None:intergenic 45.0%
!! AGTCTTGTTCAGGGACATCT+AGG + chr4_4:61929550-61929569 None:intergenic 45.0%
AGAGGAATGCAAGCAAACTC+CGG - chr4_4:61930437-61930456 Msa0693110:intron 45.0%
GAGAAAATCTTGTGTGGTCC+TGG - chr4_4:61930758-61930777 Msa0693110:intron 45.0%
AAATACCACTTGTGTGGACC+AGG + chr4_4:61930779-61930798 None:intergenic 45.0%
TGGTCCACACAAGTGGTATT+TGG - chr4_4:61930778-61930797 Msa0693110:intron 45.0%
GTGACCAAATACCACTTGTG+TGG + chr4_4:61930785-61930804 None:intergenic 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr4_4:61930856-61930875 Msa0693110:intron 45.0%
! GGACCAGGACCAAAGAATTT+TGG + chr4_4:61930906-61930925 None:intergenic 45.0%
ACGGAGGGAGTAGAAGAATA+AGG + chr4_4:61930968-61930987 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG + chr4_4:61931212-61931231 None:intergenic 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr4_4:61931212-61931231 Msa0693110:intron 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG + chr4_4:61931687-61931706 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG - chr4_4:61931701-61931720 Msa0693110:intron 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG + chr4_4:61931705-61931724 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG + chr4_4:61931792-61931811 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG + chr4_4:61931803-61931822 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG + chr4_4:61932021-61932040 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG + chr4_4:61932022-61932041 None:intergenic 45.0%
! CAGGTGGGGAGAATTTTGTA+TGG + chr4_4:61932334-61932353 None:intergenic 45.0%
GAAATGAATGGTGACAGGTG+GGG + chr4_4:61932348-61932367 None:intergenic 45.0%
GAGAAATGAATGGTGACAGG+TGG + chr4_4:61932350-61932369 None:intergenic 45.0%
GTGGAGAAATGAATGGTGAC+AGG + chr4_4:61932353-61932372 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG - chr4_4:61932355-61932374 Msa0693110:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG - chr4_4:61932357-61932376 Msa0693110:intron 45.0%
TATGTGGGCATTTATGGGGA+CGG + chr4_4:61932398-61932417 None:intergenic 45.0%
GACTTACCTGAGCATCAAAG+AGG - chr4_4:61932799-61932818 Msa0693110:intron 45.0%
CTTACCTGAGCATCAAAGAG+GGG - chr4_4:61932801-61932820 Msa0693110:intron 45.0%
GCACATCAATCTGTTGCTGA+AGG + chr4_4:61932906-61932925 None:intergenic 45.0%
AGCTTGTGCTACAGCCAATT+GGG + chr4_4:61932935-61932954 None:intergenic 45.0%
TTGAATCACCATAGGCAGCT+TGG + chr4_4:61933113-61933132 None:intergenic 45.0%
CTGCCTATGGTGATTCAATG+TGG - chr4_4:61933115-61933134 Msa0693110:intron 45.0%
! TAGAACTCTAGAAGCAGTGG+CGG - chr4_4:61933298-61933317 Msa0693110:CDS 45.0%
AAACTAATCAAGCGGGCGAA+CGG + chr4_4:61933330-61933349 None:intergenic 45.0%
TTCATGGCAAAAAGACCGGA+AGG - chr4_4:61933472-61933491 Msa0693110:five_prime_UTR 45.0%
!! TAATATATAAAAAAAAGATA+GGG + chr4_4:61929242-61929261 None:intergenic 5.0%
!! ATAATATATAAAAAAAAGAT+AGG + chr4_4:61929243-61929262 None:intergenic 5.0%
AGGAAGGAAGGAAGGAAGAG+CGG + chr4_4:61928138-61928157 None:intergenic 50.0%
GGACTACTAGGAAGGAAGGA+AGG + chr4_4:61928146-61928165 None:intergenic 50.0%
GTAGGGACTACTAGGAAGGA+AGG + chr4_4:61928150-61928169 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG - chr4_4:61928355-61928374 Msa0693110:three_prime_UTR 50.0%
AGAAGCTTGCATGCAGCACA+AGG + chr4_4:61928391-61928410 None:intergenic 50.0%
ACTTGTGAGGCTCATCAGCA+GGG + chr4_4:61928456-61928475 None:intergenic 50.0%
AACTTGTGAGGCTCATCAGC+AGG + chr4_4:61928457-61928476 None:intergenic 50.0%
TGTGGCCCAGATGTGTTGTA+TGG - chr4_4:61928644-61928663 Msa0693110:exon 50.0%
GTGGCCCAGATGTGTTGTAT+GGG - chr4_4:61928645-61928664 Msa0693110:exon 50.0%
! AAGATAGGGAAGGGCATGTG+GGG + chr4_4:61929228-61929247 None:intergenic 50.0%
CACTTGTCACAACGACACGT+TGG + chr4_4:61930217-61930236 None:intergenic 50.0%
CAAACTCCGGTGGCGTTAAT+TGG - chr4_4:61930450-61930469 Msa0693110:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr4_4:61930921-61930940 None:intergenic 50.0%
GATGTGTGGGGATATGGTCA+AGG + chr4_4:61930946-61930965 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG + chr4_4:61931211-61931230 None:intergenic 50.0%
GGTCAAGTAATATGGGACGG+AGG - chr4_4:61931211-61931230 Msa0693110:intron 50.0%
TTAACATGTGCCCTAAGGGC+AGG - chr4_4:61931509-61931528 Msa0693110:intron 50.0%
TAACATGTGCCCTAAGGGCA+GGG - chr4_4:61931510-61931529 Msa0693110:intron 50.0%
TAACATGTGCCCTGCCCTTA+GGG + chr4_4:61931522-61931541 None:intergenic 50.0%
TTAACATGTGCCCTGCCCTT+AGG + chr4_4:61931523-61931542 None:intergenic 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG + chr4_4:61931694-61931713 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG + chr4_4:61931700-61931719 None:intergenic 50.0%
GTATTGCCCCCCAAAAGTCA+GGG - chr4_4:61932009-61932028 Msa0693110:intron 50.0%
! TGCATGACCCTGACTTTTGG+GGG + chr4_4:61932019-61932038 None:intergenic 50.0%
! GTGCATGACCCTGACTTTTG+GGG + chr4_4:61932020-61932039 None:intergenic 50.0%
CCCCAAGGTGGAGAAATGAA+TGG + chr4_4:61932360-61932379 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG + chr4_4:61932372-61932391 None:intergenic 50.0%
GACATGGGAAAATCTCCCCA+AGG + chr4_4:61932375-61932394 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG + chr4_4:61932390-61932409 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG + chr4_4:61932397-61932416 None:intergenic 50.0%
TTAGATGACCCTGCAGGACA+GGG - chr4_4:61932425-61932444 Msa0693110:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG - chr4_4:61932565-61932584 Msa0693110:intron 50.0%
AGAGTGAGAGACCCTGTGTA+TGG - chr4_4:61932859-61932878 Msa0693110:intron 50.0%
AGACCCTGTGTATGGTTGTG+TGG - chr4_4:61932867-61932886 Msa0693110:intron 50.0%
GACCCTGTGTATGGTTGTGT+GGG - chr4_4:61932868-61932887 Msa0693110:intron 50.0%
ACCCTGTGTATGGTTGTGTG+GGG - chr4_4:61932869-61932888 Msa0693110:intron 50.0%
CAGCTTGTGCTACAGCCAAT+TGG + chr4_4:61932936-61932955 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG - chr4_4:61932936-61932955 Msa0693110:intron 50.0%
! GTTCGCCCGCTTGATTAGTT+TGG - chr4_4:61933329-61933348 Msa0693110:CDS 50.0%
ATTAGGGAGAAGGGCCCACA+TGG - chr4_4:61928052-61928071 Msa0693110:three_prime_UTR 55.0%
ATGGCACCACCACTCCATGT+GGG + chr4_4:61928069-61928088 None:intergenic 55.0%
CTTGCATGCAGCACAAGGTG+AGG + chr4_4:61928386-61928405 None:intergenic 55.0%
GGCTCATCAGCAGGGAAGTA+AGG + chr4_4:61928448-61928467 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG - chr4_4:61929186-61929205 Msa0693110:intron 55.0%
GGAATGCAAGCAAACTCCGG+TGG - chr4_4:61930440-61930459 Msa0693110:intron 55.0%
GGTATTGCCCCCCAAAAGTC+AGG - chr4_4:61932008-61932027 Msa0693110:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG + chr4_4:61932018-61932037 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG + chr4_4:61932391-61932410 None:intergenic 55.0%
GTACGGTTAGATGACCCTGC+AGG - chr4_4:61932419-61932438 Msa0693110:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG - chr4_4:61932424-61932443 Msa0693110:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG - chr4_4:61932426-61932445 Msa0693110:intron 55.0%
CATCATACCCCTGTCCTGCA+GGG + chr4_4:61932436-61932455 None:intergenic 55.0%
CGGTCTCGGACACTGAAAGT+TGG - chr4_4:61932562-61932581 Msa0693110:intron 55.0%
CGGACACTGAAAGTTGGAGG+AGG - chr4_4:61932568-61932587 Msa0693110:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG + chr4_4:61932808-61932827 None:intergenic 55.0%
AGGGGATGCAGTGAGTAGCA+TGG - chr4_4:61932819-61932838 Msa0693110:intron 55.0%
CCCCCACACAACCATACACA+GGG + chr4_4:61932873-61932892 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG - chr4_4:61932870-61932889 Msa0693110:intron 55.0%
AAGCTGAGGCAGTGCACCTA+AGG - chr4_4:61932950-61932969 Msa0693110:intron 55.0%
AGCTGAGGCAGTGCACCTAA+GGG - chr4_4:61932951-61932970 Msa0693110:intron 55.0%
ATGCAGTTTGGCGCACCCTT+AGG + chr4_4:61932969-61932988 None:intergenic 55.0%
! AACTCTAGAAGCAGTGGCGG+CGG - chr4_4:61933301-61933320 Msa0693110:CDS 55.0%
CATGGCACCACCACTCCATG+TGG + chr4_4:61928070-61928089 None:intergenic 60.0%
GCAAGAACAAGAGGCAGGGG+CGG - chr4_4:61929173-61929192 Msa0693110:intron 60.0%
GTGGTCCTGGTCCACACAAG+TGG - chr4_4:61930771-61930790 Msa0693110:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG + chr4_4:61932437-61932456 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG + chr4_4:61932874-61932893 None:intergenic 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG - chr4_4:61933102-61933121 Msa0693110:intron 60.0%
GGAGAAGGGCCCACATGGAG+TGG - chr4_4:61928057-61928076 Msa0693110:three_prime_UTR 65.0%
GAAGGGCCCACATGGAGTGG+TGG - chr4_4:61928060-61928079 Msa0693110:three_prime_UTR 65.0%
TCTAGAAGCAGTGGCGGCGG+CGG - chr4_4:61933304-61933323 Msa0693110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61928035 61933756 61928035 ID=Msa0693110;Name=Msa0693110
chr4_4 mRNA 61928035 61933756 61928035 ID=Msa0693110-mRNA-1;Parent=Msa0693110;Name=Msa0693110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=311|1|1|1|1|1|2|616|174
chr4_4 exon 61928035 61928992 61928035 ID=Msa0693110-mRNA-1:exon:17261;Parent=Msa0693110-mRNA-1
chr4_4 exon 61933263 61933756 61933263 ID=Msa0693110-mRNA-1:exon:17260;Parent=Msa0693110-mRNA-1
chr4_4 five_prime_UTR 61933446 61933756 61933446 ID=Msa0693110-mRNA-1:five_prime_utr;Parent=Msa0693110-mRNA-1
chr4_4 CDS 61933263 61933445 61933263 ID=Msa0693110-mRNA-1:cds;Parent=Msa0693110-mRNA-1
chr4_4 CDS 61928651 61928992 61928651 ID=Msa0693110-mRNA-1:cds;Parent=Msa0693110-mRNA-1
chr4_4 three_prime_UTR 61928035 61928650 61928035 ID=Msa0693110-mRNA-1:three_prime_utr;Parent=Msa0693110-mRNA-1
Gene Sequence

>Msa0693110

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>Msa0693110

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW*