Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610790 | XP_003607895.1 | 98.268 | 231 | 4 | 0 | 1 | 231 | 1 | 231 | 1.43e-166 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610790 | sp|Q39211|NRPB3_ARATH | 78.112 | 233 | 48 | 2 | 1 | 231 | 1 | 232 | 9.46e-131 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610790 | Q2MGQ5 | 98.268 | 231 | 4 | 0 | 1 | 231 | 1 | 231 | 6.85e-167 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0610790 | 0.805330 | 1.406453e-49 | -8.615850e-47 |
| Msa0059110 | Msa0610790 | 0.806492 | 8.012930e-50 | -8.615850e-47 |
| Msa0610790 | Msa1128600 | 0.836250 | 1.044395e-56 | -8.615850e-47 |
| Msa0610790 | Msa1174780 | 0.805391 | 1.365356e-49 | -8.615850e-47 |
| Msa0610790 | Msa1342410 | 0.810441 | 1.151135e-50 | -8.615850e-47 |
| Msa0610790 | Msa1361660 | 0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa0610790 | Msa1374060 | 0.808012 | 3.816286e-50 | -8.615850e-47 |
| Msa0610790 | Msa1381350 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0610790 | Msa1382560 | 0.802327 | 5.914135e-49 | -8.615850e-47 |
| Msa0146280 | Msa0610790 | 0.804928 | 1.707197e-49 | -8.615850e-47 |
| Msa0556060 | Msa0610790 | 0.894114 | 3.343712e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610790 | MtrunA17_Chr4g0043761 | 98.268 | 231 | 4 | 0 | 1 | 231 | 1 | 231 | 1.32e-170 | 472 |
| Msa0610790 | MtrunA17_Chr3g0102701 | 33.617 | 235 | 125 | 6 | 11 | 223 | 87 | 312 | 1.26e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610790 | AT2G15430.2 | 77.253 | 233 | 52 | 1 | 1 | 232 | 1 | 233 | 3.46e-133 | 375 |
| Msa0610790 | AT2G15430.3 | 76.596 | 235 | 54 | 1 | 1 | 234 | 1 | 235 | 2.13e-132 | 373 |
| Msa0610790 | AT2G15430.1 | 78.112 | 233 | 48 | 2 | 1 | 231 | 1 | 232 | 9.62e-132 | 374 |
| Msa0610790 | AT2G15400.2 | 72.174 | 230 | 63 | 1 | 1 | 229 | 1 | 230 | 4.77e-118 | 336 |
| Msa0610790 | AT2G15400.1 | 71.552 | 232 | 65 | 1 | 1 | 231 | 1 | 232 | 3.93e-117 | 337 |
| Msa0610790 | AT1G60620.2 | 32.500 | 240 | 129 | 5 | 11 | 227 | 17 | 246 | 9.86e-29 | 110 |
| Msa0610790 | AT1G60620.1 | 32.500 | 240 | 129 | 5 | 11 | 227 | 82 | 311 | 2.96e-28 | 110 |
| Msa0610790 | AT1G60850.2 | 33.051 | 236 | 125 | 5 | 11 | 223 | 75 | 300 | 8.49e-28 | 109 |
| Msa0610790 | AT1G60850.4 | 33.051 | 236 | 125 | 5 | 11 | 223 | 75 | 300 | 8.49e-28 | 109 |
| Msa0610790 | AT1G60850.1 | 33.051 | 236 | 125 | 5 | 11 | 223 | 75 | 300 | 8.49e-28 | 109 |
| Msa0610790 | AT1G60850.3 | 34.906 | 212 | 106 | 5 | 11 | 196 | 75 | 280 | 1.46e-26 | 104 |
Find 69 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATCAATGAAGATTTAA+TGG | 0.210874 | 4_2:-58659270 | Msa0610790:CDS |
| TATTCGCTTCCTAAGGATTT+TGG | 0.218575 | 4_2:-58659151 | Msa0610790:exon |
| GTTCAGTTGAGTTTCATCTT+AGG | 0.271624 | 4_2:-58660570 | Msa0610790:CDS |
| TTTGACACTTGAGGAGAAAA+AGG | 0.302144 | 4_2:-58659243 | Msa0610790:CDS |
| AAGACAGTAAGGCAAGTATT+TGG | 0.307616 | 4_2:+58659044 | None:intergenic |
| GTTACTCCGGTGGATGTTCC+TGG | 0.334842 | 4_2:-58660481 | Msa0610790:CDS |
| CCGGAGCGCGTTGGCGACGC+TGG | 0.342082 | 4_2:+58660783 | None:intergenic |
| CACATTTGGGGTTTGAGAAA+AGG | 0.348298 | 4_2:-58660949 | None:intergenic |
| CCAGCGTCGCCAACGCGCTC+CGG | 0.359601 | 4_2:-58660783 | Msa0610790:CDS |
| TTCAGTTGAGTTTCATCTTA+GGG | 0.374933 | 4_2:-58660569 | Msa0610790:CDS |
| TGTAGTCGTCTTTGAGTTCA+CGG | 0.407857 | 4_2:+58660833 | None:intergenic |
| ACATTTGGGGTTTGAGAAAA+GGG | 0.414315 | 4_2:-58660948 | None:intergenic |
| CTTAGGAAGCGAATAAGAAT+AGG | 0.432764 | 4_2:+58659159 | None:intergenic |
| GTTAAGGAGAAAGATGAATT+CGG | 0.436629 | 4_2:+58660898 | None:intergenic |
| CGCGTTGGCGACGCTGGCGT+CGG | 0.437447 | 4_2:+58660789 | None:intergenic |
| AGTTGCTGCTGGTGACCATT+TGG | 0.448661 | 4_2:+58659319 | None:intergenic |
| CTATTCTTATTCGCTTCCTA+AGG | 0.448924 | 4_2:-58659158 | Msa0610790:exon |
| CGACGCGCCTTCCATTGTTA+AGG | 0.464353 | 4_2:+58660882 | None:intergenic |
| AGGCAAACCTGCTGTGTGAC+AGG | 0.471461 | 4_2:+58659179 | None:intergenic |
| CTGATACTTAGTTATGCACT+TGG | 0.473445 | 4_2:-58659080 | Msa0610790:three_prime_UTR |
| GACGTTGGATGTTAGTAGTA+AGG | 0.475900 | 4_2:-58660527 | Msa0610790:CDS |
| ACTGAGAGCGATTGCTAGGA+AGG | 0.484416 | 4_2:-58659360 | Msa0610790:CDS |
| TGTGCCTAACCAAAATCCTT+AGG | 0.491838 | 4_2:+58659142 | None:intergenic |
| CACAAAATCAAAAGACAGTA+AGG | 0.492214 | 4_2:+58659033 | None:intergenic |
| ACTGATTTCACATGTAATGC+TGG | 0.493232 | 4_2:-58659115 | Msa0610790:three_prime_UTR |
| TCTTTCTCCTTAACAATGGA+AGG | 0.498182 | 4_2:-58660889 | Msa0610790:exon |
| TCTTCATTGATGTGAATGTC+TGG | 0.502428 | 4_2:+58659278 | None:intergenic |
| TCTTAGGGTTAAGTGTATAA+CGG | 0.507140 | 4_2:-58660554 | Msa0610790:CDS |
| ACGTGAGAAGCGCATGGCCA+TGG | 0.507484 | 4_2:+58660633 | None:intergenic |
| ATGAATTCGGAGAAGAAATG+TGG | 0.513919 | 4_2:+58660911 | None:intergenic |
| TGAGACTGAGAGCGATTGCT+AGG | 0.516563 | 4_2:-58659364 | Msa0610790:CDS |
| TGTGAAGTTGAGGAGAGGTC+AGG | 0.526667 | 4_2:-58659390 | Msa0610790:CDS |
| TATTGATCCTGTCACACAGC+AGG | 0.526854 | 4_2:-58659186 | Msa0610790:CDS |
| AATGGAGTCTTTGACACTTG+AGG | 0.531173 | 4_2:-58659252 | Msa0610790:CDS |
| TTCATCTTTCTCCTTAACAA+TGG | 0.533416 | 4_2:-58660893 | Msa0610790:exon |
| TTCAACAAGGTCGATGGCGA+TGG | 0.534984 | 4_2:+58660735 | None:intergenic |
| TTCGATTTCAACAAGGTCGA+TGG | 0.544241 | 4_2:+58660729 | None:intergenic |
| GATGCTTCTGTTGAATCTGA+TGG | 0.545347 | 4_2:-58660454 | Msa0610790:CDS |
| GGATTATCATTGTGAAGTTG+AGG | 0.552832 | 4_2:-58659400 | Msa0610790:CDS |
| TCAATATCAAAGACACGAGT+AGG | 0.554647 | 4_2:+58659203 | None:intergenic |
| TCGGTAAGGATCATGCCAAA+TGG | 0.554925 | 4_2:-58659334 | Msa0610790:CDS |
| TGAGAGCGATTGCTAGGAAG+GGG | 0.558513 | 4_2:-58659358 | Msa0610790:CDS |
| CATCACGCGCCGGAGCGCGT+TGG | 0.561690 | 4_2:+58660774 | None:intergenic |
| ACTCACAAGCGAACGTGCCA+TGG | 0.569511 | 4_2:-58660650 | Msa0610790:CDS |
| CACCGGAGTAACGGTATGAT+CGG | 0.570614 | 4_2:+58660492 | None:intergenic |
| CTGAGAGCGATTGCTAGGAA+GGG | 0.570973 | 4_2:-58659359 | Msa0610790:CDS |
| CTTCTGTTGAATCTGATGGA+AGG | 0.575113 | 4_2:-58660450 | Msa0610790:intron |
| CGATCATACCGTTACTCCGG+TGG | 0.575290 | 4_2:-58660491 | Msa0610790:CDS |
| TGCTAGGAAGGGGATCGGTA+AGG | 0.577965 | 4_2:-58659348 | Msa0610790:CDS |
| ATGGCACGTTCGCTTGTGAG+TGG | 0.583334 | 4_2:+58660652 | None:intergenic |
| GAGTTCATCGCTCACAGACT+CGG | 0.584109 | 4_2:-58660682 | Msa0610790:CDS |
| AGGAACATCCACCGGAGTAA+CGG | 0.584181 | 4_2:+58660483 | None:intergenic |
| ACAAGGTCGATGGCGATGGT+AGG | 0.593898 | 4_2:+58660739 | None:intergenic |
| GATGAACTCGTCGTTCAGAA+CGG | 0.596567 | 4_2:+58660696 | None:intergenic |
| CGTGACTGTGATGCTTGTGA+TGG | 0.599792 | 4_2:-58660613 | Msa0610790:CDS |
| GATGGCGATGGTAGGAACTT+CGG | 0.612991 | 4_2:+58660747 | None:intergenic |
| TCAACAGAAGCATCACCACC+AGG | 0.615579 | 4_2:+58660463 | None:intergenic |
| TGAATTCGGAGAAGAAATGT+GGG | 0.617527 | 4_2:+58660912 | None:intergenic |
| TGTGATGCTTGTGATGGTGA+TGG | 0.622311 | 4_2:-58660607 | Msa0610790:CDS |
| CTCCGATCATACCGTTACTC+CGG | 0.622448 | 4_2:-58660494 | Msa0610790:CDS |
| TCACCACCAGGAACATCCAC+CGG | 0.625792 | 4_2:+58660475 | None:intergenic |
| GCGATTGCTAGGAAGGGGAT+CGG | 0.627906 | 4_2:-58659353 | Msa0610790:CDS |
| ATCATTGTGAAGTTGAGGAG+AGG | 0.635073 | 4_2:-58659395 | Msa0610790:CDS |
| ATGAAAGTAACAGTTGCTGC+TGG | 0.644886 | 4_2:+58659308 | None:intergenic |
| ACAGTCACGTGAGAAGCGCA+TGG | 0.655640 | 4_2:+58660627 | None:intergenic |
| CTTCGGAAATCATCACGCGC+CGG | 0.659935 | 4_2:+58660764 | None:intergenic |
| AGTTCACTTCGATTTCAACA+AGG | 0.663781 | 4_2:+58660722 | None:intergenic |
| GTGTATAACGGATCAGACGT+TGG | 0.703684 | 4_2:-58660542 | Msa0610790:CDS |
| ACTCCGGTGGATGTTCCTGG+TGG | 0.749174 | 4_2:-58660478 | Msa0610790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAAAAACAAAAT+AGG | + | chr4_2:58659453-58659472 | None:intergenic | 10.0% |
| !! | AAAAAACAAAAAAACAAAAT+AGG | + | chr4_2:58659453-58659472 | None:intergenic | 10.0% |
| !!! | AAAAAAATCAGTTTTTCTAA+TGG | - | chr4_2:58659489-58659508 | Msa0610790:intron | 15.0% |
| !!! | AAAAAATCAGTTTTTCTAAT+GGG | - | chr4_2:58659490-58659509 | Msa0610790:intron | 15.0% |
| !!! | TTTTATATATGATAATCATG+TGG | - | chr4_2:58660946-58660965 | Msa0610790:five_prime_UTR | 15.0% |
| !!! | AAAAAAATCAGTTTTTCTAA+TGG | - | chr4_2:58659489-58659508 | Msa0610790:intron | 15.0% |
| !!! | AAAAAATCAGTTTTTCTAAT+GGG | - | chr4_2:58659490-58659509 | Msa0610790:intron | 15.0% |
| !!! | CTGATTTTTTTTTCTCATTA+GGG | + | chr4_2:58659480-58659499 | None:intergenic | 20.0% |
| !!! | ACTGATTTTTTTTTCTCATT+AGG | + | chr4_2:58659481-58659500 | None:intergenic | 20.0% |
| !!! | TATAAGCTATTTCTATAACA+AGG | - | chr4_2:58659662-58659681 | Msa0610790:intron | 20.0% |
| !!! | CTTTTGATTTTGTGTTTAAA+TGG | - | chr4_2:58660846-58660865 | Msa0610790:CDS | 20.0% |
| !!! | CTGATTTTTTTTTCTCATTA+GGG | + | chr4_2:58659480-58659499 | None:intergenic | 20.0% |
| !!! | ACTGATTTTTTTTTCTCATT+AGG | + | chr4_2:58659481-58659500 | None:intergenic | 20.0% |
| !!! | TATAAGCTATTTCTATAACA+AGG | - | chr4_2:58659662-58659681 | Msa0610790:intron | 20.0% |
| !!! | CTTTTGATTTTGTGTTTAAA+TGG | - | chr4_2:58660846-58660865 | Msa0610790:CDS | 20.0% |
| ! | TCAAATAAACCAATACAAAC+AGG | - | chr4_2:58659821-58659840 | Msa0610790:intron | 25.0% |
| !!! | TTTGGTTTGATGTTTTCAAA+TGG | - | chr4_2:58659857-58659876 | Msa0610790:intron | 25.0% |
| !!! | TTGGTTTGATGTTTTCAAAT+GGG | - | chr4_2:58659858-58659877 | Msa0610790:intron | 25.0% |
| ! | AATTAAGCTGTTTACCTATA+GGG | + | chr4_2:58660038-58660057 | None:intergenic | 25.0% |
| ! | AAATTAAGCTGTTTACCTAT+AGG | + | chr4_2:58660039-58660058 | None:intergenic | 25.0% |
| ! | TAAGCTATGTCTATAACAAA+AGG | - | chr4_2:58660158-58660177 | Msa0610790:intron | 25.0% |
| !! | AATGAGATTAAAGGTATGTT+TGG | + | chr4_2:58660343-58660362 | None:intergenic | 25.0% |
| ! | TACCTTTAATCTCATTTAGA+TGG | - | chr4_2:58660347-58660366 | Msa0610790:intron | 25.0% |
| ! | AACCATCTAAATGAGATTAA+AGG | + | chr4_2:58660352-58660371 | None:intergenic | 25.0% |
| !!! | GTTTTAATGTTGGGTTTATT+CGG | - | chr4_2:58660404-58660423 | Msa0610790:intron | 25.0% |
| !!! | TTTTTGTTTATGCTGAATGT+AGG | - | chr4_2:58660446-58660465 | Msa0610790:intron | 25.0% |
| !!! | TTTTGTTTATGCTGAATGTA+GGG | - | chr4_2:58660447-58660466 | Msa0610790:intron | 25.0% |
| ! | TCACATCAATGAAGATTTAA+TGG | - | chr4_2:58660600-58660619 | Msa0610790:CDS | 25.0% |
| ! | TCAAATAAACCAATACAAAC+AGG | - | chr4_2:58659821-58659840 | Msa0610790:intron | 25.0% |
| !!! | TTTGGTTTGATGTTTTCAAA+TGG | - | chr4_2:58659857-58659876 | Msa0610790:intron | 25.0% |
| !!! | TTGGTTTGATGTTTTCAAAT+GGG | - | chr4_2:58659858-58659877 | Msa0610790:intron | 25.0% |
| ! | AATTAAGCTGTTTACCTATA+GGG | + | chr4_2:58660038-58660057 | None:intergenic | 25.0% |
| ! | AAATTAAGCTGTTTACCTAT+AGG | + | chr4_2:58660039-58660058 | None:intergenic | 25.0% |
| ! | TAAGCTATGTCTATAACAAA+AGG | - | chr4_2:58660158-58660177 | Msa0610790:intron | 25.0% |
| !! | AATGAGATTAAAGGTATGTT+TGG | + | chr4_2:58660343-58660362 | None:intergenic | 25.0% |
| ! | TACCTTTAATCTCATTTAGA+TGG | - | chr4_2:58660347-58660366 | Msa0610790:intron | 25.0% |
| ! | AACCATCTAAATGAGATTAA+AGG | + | chr4_2:58660352-58660371 | None:intergenic | 25.0% |
| !!! | GTTTTAATGTTGGGTTTATT+CGG | - | chr4_2:58660404-58660423 | Msa0610790:intron | 25.0% |
| !!! | TTTTTGTTTATGCTGAATGT+AGG | - | chr4_2:58660446-58660465 | Msa0610790:intron | 25.0% |
| !!! | TTTTGTTTATGCTGAATGTA+GGG | - | chr4_2:58660447-58660466 | Msa0610790:intron | 25.0% |
| ! | TCACATCAATGAAGATTTAA+TGG | - | chr4_2:58660600-58660619 | Msa0610790:CDS | 25.0% |
| GTTAAGGAGAAAGATGAATT+CGG | + | chr4_2:58658975-58658994 | None:intergenic | 30.0% | |
| TTCATCTTTCTCCTTAACAA+TGG | - | chr4_2:58658977-58658996 | Msa0610790:three_prime_UTR | 30.0% | |
| TTCAGTTGAGTTTCATCTTA+GGG | - | chr4_2:58659301-58659320 | Msa0610790:CDS | 30.0% | |
| TCTTAGGGTTAAGTGTATAA+CGG | - | chr4_2:58659316-58659335 | Msa0610790:CDS | 30.0% | |
| ! | GGTTTTCTTAGATTTCAACT+GGG | - | chr4_2:58659511-58659530 | Msa0610790:intron | 30.0% |
| TTTGAATGTGATTGTGTGTA+TGG | - | chr4_2:58659560-58659579 | Msa0610790:intron | 30.0% | |
| TTGAATGTGATTGTGTGTAT+GGG | - | chr4_2:58659561-58659580 | Msa0610790:intron | 30.0% | |
| !!! | AGAACGAACAGTTTTGTTTT+AGG | - | chr4_2:58659610-58659629 | Msa0610790:intron | 30.0% |
| TCAAACCAAAATGAGAACAA+GGG | + | chr4_2:58659847-58659866 | None:intergenic | 30.0% | |
| ATCAAACCAAAATGAGAACA+AGG | + | chr4_2:58659848-58659867 | None:intergenic | 30.0% | |
| ! | TTTTCAAATGTGACATGCAT+GGG | - | chr4_2:58659890-58659909 | Msa0610790:intron | 30.0% |
| AGAACAAACAGTTATGTTGT+AGG | - | chr4_2:58659939-58659958 | Msa0610790:intron | 30.0% | |
| AGTTATGTTGTAGGATCTTT+GGG | - | chr4_2:58659948-58659967 | Msa0610790:intron | 30.0% | |
| TATACGCATAGCTTATTCAT+AGG | + | chr4_2:58660080-58660099 | None:intergenic | 30.0% | |
| AATAAGCTATGCGTATAACA+AGG | - | chr4_2:58660083-58660102 | Msa0610790:intron | 30.0% | |
| ! | GATTAAAGGTATGTTTGGAT+TGG | + | chr4_2:58660338-58660357 | None:intergenic | 30.0% |
| TTTGTTTATGCTGAATGTAG+GGG | - | chr4_2:58660448-58660467 | Msa0610790:intron | 30.0% | |
| CACAAAATCAAAAGACAGTA+AGG | + | chr4_2:58660840-58660859 | None:intergenic | 30.0% | |
| GTTAAGGAGAAAGATGAATT+CGG | + | chr4_2:58658975-58658994 | None:intergenic | 30.0% | |
| TTCATCTTTCTCCTTAACAA+TGG | - | chr4_2:58658977-58658996 | Msa0610790:three_prime_UTR | 30.0% | |
| TTCAGTTGAGTTTCATCTTA+GGG | - | chr4_2:58659301-58659320 | Msa0610790:CDS | 30.0% | |
| TCTTAGGGTTAAGTGTATAA+CGG | - | chr4_2:58659316-58659335 | Msa0610790:CDS | 30.0% | |
| ! | GGTTTTCTTAGATTTCAACT+GGG | - | chr4_2:58659511-58659530 | Msa0610790:intron | 30.0% |
| TTTGAATGTGATTGTGTGTA+TGG | - | chr4_2:58659560-58659579 | Msa0610790:intron | 30.0% | |
| TTGAATGTGATTGTGTGTAT+GGG | - | chr4_2:58659561-58659580 | Msa0610790:intron | 30.0% | |
| !!! | AGAACGAACAGTTTTGTTTT+AGG | - | chr4_2:58659610-58659629 | Msa0610790:intron | 30.0% |
| TCAAACCAAAATGAGAACAA+GGG | + | chr4_2:58659847-58659866 | None:intergenic | 30.0% | |
| ATCAAACCAAAATGAGAACA+AGG | + | chr4_2:58659848-58659867 | None:intergenic | 30.0% | |
| ! | TTTTCAAATGTGACATGCAT+GGG | - | chr4_2:58659890-58659909 | Msa0610790:intron | 30.0% |
| AGAACAAACAGTTATGTTGT+AGG | - | chr4_2:58659939-58659958 | Msa0610790:intron | 30.0% | |
| AGTTATGTTGTAGGATCTTT+GGG | - | chr4_2:58659948-58659967 | Msa0610790:intron | 30.0% | |
| TATACGCATAGCTTATTCAT+AGG | + | chr4_2:58660080-58660099 | None:intergenic | 30.0% | |
| AATAAGCTATGCGTATAACA+AGG | - | chr4_2:58660083-58660102 | Msa0610790:intron | 30.0% | |
| ! | GATTAAAGGTATGTTTGGAT+TGG | + | chr4_2:58660338-58660357 | None:intergenic | 30.0% |
| TTTGTTTATGCTGAATGTAG+GGG | - | chr4_2:58660448-58660467 | Msa0610790:intron | 30.0% | |
| CACAAAATCAAAAGACAGTA+AGG | + | chr4_2:58660840-58660859 | None:intergenic | 30.0% | |
| TGAATTCGGAGAAGAAATGT+GGG | + | chr4_2:58658961-58658980 | None:intergenic | 35.0% | |
| ATGAATTCGGAGAAGAAATG+TGG | + | chr4_2:58658962-58658981 | None:intergenic | 35.0% | |
| TCTTTCTCCTTAACAATGGA+AGG | - | chr4_2:58658981-58659000 | Msa0610790:three_prime_UTR | 35.0% | |
| AGTTCACTTCGATTTCAACA+AGG | + | chr4_2:58659151-58659170 | None:intergenic | 35.0% | |
| GTTCAGTTGAGTTTCATCTT+AGG | - | chr4_2:58659300-58659319 | Msa0610790:CDS | 35.0% | |
| ! | GGGTTTTCTTAGATTTCAAC+TGG | - | chr4_2:58659510-58659529 | Msa0610790:intron | 35.0% |
| ! | TGTGTATGGGTTTAGGTTTA+GGG | - | chr4_2:58659574-58659593 | Msa0610790:intron | 35.0% |
| !!! | AGAGAGTTTTGGAAATAAGC+TGG | - | chr4_2:58659730-58659749 | Msa0610790:intron | 35.0% |
| ! | GTTTTCAAATGTGACATGCA+TGG | - | chr4_2:58659889-58659908 | Msa0610790:intron | 35.0% |
| CAGTTATGTTGTAGGATCTT+TGG | - | chr4_2:58659947-58659966 | Msa0610790:intron | 35.0% | |
| GTCTGTAAAAAAGACCCTAT+AGG | - | chr4_2:58660021-58660040 | Msa0610790:intron | 35.0% | |
| AACTAGGATGTTTACCCAAA+GGG | + | chr4_2:58660109-58660128 | None:intergenic | 35.0% | |
| TAACTAGGATGTTTACCCAA+AGG | + | chr4_2:58660110-58660129 | None:intergenic | 35.0% | |
| TTGCTATAAAGCTCGTAACT+AGG | + | chr4_2:58660125-58660144 | None:intergenic | 35.0% | |
| GAAAACAGCTTACAGCTTAA+TGG | + | chr4_2:58660205-58660224 | None:intergenic | 35.0% | |
| ! | TTCCATTTTCATTGATGCTG+AGG | - | chr4_2:58660379-58660398 | Msa0610790:intron | 35.0% |
| ! | TCCATTTTCATTGATGCTGA+GGG | - | chr4_2:58660380-58660399 | Msa0610790:intron | 35.0% |
| TTAATGTTGGGTTTATTCGG+AGG | - | chr4_2:58660407-58660426 | Msa0610790:intron | 35.0% | |
| TTGTTTATGCTGAATGTAGG+GGG | - | chr4_2:58660449-58660468 | Msa0610790:intron | 35.0% | |
| GGATTATCATTGTGAAGTTG+AGG | - | chr4_2:58660470-58660489 | Msa0610790:CDS | 35.0% | |
| TCTTCATTGATGTGAATGTC+TGG | + | chr4_2:58660595-58660614 | None:intergenic | 35.0% | |
| TTTGACACTTGAGGAGAAAA+AGG | - | chr4_2:58660627-58660646 | Msa0610790:CDS | 35.0% | |
| TCAATATCAAAGACACGAGT+AGG | + | chr4_2:58660670-58660689 | None:intergenic | 35.0% | |
| CTTAGGAAGCGAATAAGAAT+AGG | + | chr4_2:58660714-58660733 | None:intergenic | 35.0% | |
| CTATTCTTATTCGCTTCCTA+AGG | - | chr4_2:58660712-58660731 | Msa0610790:CDS | 35.0% | |
| ! | TATTCGCTTCCTAAGGATTT+TGG | - | chr4_2:58660719-58660738 | Msa0610790:CDS | 35.0% |
| ! | ACTGATTTCACATGTAATGC+TGG | - | chr4_2:58660755-58660774 | Msa0610790:CDS | 35.0% |
| CTGATACTTAGTTATGCACT+TGG | - | chr4_2:58660790-58660809 | Msa0610790:CDS | 35.0% | |
| AAGACAGTAAGGCAAGTATT+TGG | + | chr4_2:58660829-58660848 | None:intergenic | 35.0% | |
| TGAATTCGGAGAAGAAATGT+GGG | + | chr4_2:58658961-58658980 | None:intergenic | 35.0% | |
| ATGAATTCGGAGAAGAAATG+TGG | + | chr4_2:58658962-58658981 | None:intergenic | 35.0% | |
| TCTTTCTCCTTAACAATGGA+AGG | - | chr4_2:58658981-58659000 | Msa0610790:three_prime_UTR | 35.0% | |
| AGTTCACTTCGATTTCAACA+AGG | + | chr4_2:58659151-58659170 | None:intergenic | 35.0% | |
| GTTCAGTTGAGTTTCATCTT+AGG | - | chr4_2:58659300-58659319 | Msa0610790:CDS | 35.0% | |
| ! | GGGTTTTCTTAGATTTCAAC+TGG | - | chr4_2:58659510-58659529 | Msa0610790:intron | 35.0% |
| ! | TGTGTATGGGTTTAGGTTTA+GGG | - | chr4_2:58659574-58659593 | Msa0610790:intron | 35.0% |
| !!! | AGAGAGTTTTGGAAATAAGC+TGG | - | chr4_2:58659730-58659749 | Msa0610790:intron | 35.0% |
| ! | GTTTTCAAATGTGACATGCA+TGG | - | chr4_2:58659889-58659908 | Msa0610790:intron | 35.0% |
| CAGTTATGTTGTAGGATCTT+TGG | - | chr4_2:58659947-58659966 | Msa0610790:intron | 35.0% | |
| GTCTGTAAAAAAGACCCTAT+AGG | - | chr4_2:58660021-58660040 | Msa0610790:intron | 35.0% | |
| AACTAGGATGTTTACCCAAA+GGG | + | chr4_2:58660109-58660128 | None:intergenic | 35.0% | |
| TAACTAGGATGTTTACCCAA+AGG | + | chr4_2:58660110-58660129 | None:intergenic | 35.0% | |
| TTGCTATAAAGCTCGTAACT+AGG | + | chr4_2:58660125-58660144 | None:intergenic | 35.0% | |
| GAAAACAGCTTACAGCTTAA+TGG | + | chr4_2:58660205-58660224 | None:intergenic | 35.0% | |
| ! | TTCCATTTTCATTGATGCTG+AGG | - | chr4_2:58660379-58660398 | Msa0610790:intron | 35.0% |
| ! | TCCATTTTCATTGATGCTGA+GGG | - | chr4_2:58660380-58660399 | Msa0610790:intron | 35.0% |
| TTAATGTTGGGTTTATTCGG+AGG | - | chr4_2:58660407-58660426 | Msa0610790:intron | 35.0% | |
| TTGTTTATGCTGAATGTAGG+GGG | - | chr4_2:58660449-58660468 | Msa0610790:intron | 35.0% | |
| GGATTATCATTGTGAAGTTG+AGG | - | chr4_2:58660470-58660489 | Msa0610790:CDS | 35.0% | |
| TCTTCATTGATGTGAATGTC+TGG | + | chr4_2:58660595-58660614 | None:intergenic | 35.0% | |
| TTTGACACTTGAGGAGAAAA+AGG | - | chr4_2:58660627-58660646 | Msa0610790:CDS | 35.0% | |
| TCAATATCAAAGACACGAGT+AGG | + | chr4_2:58660670-58660689 | None:intergenic | 35.0% | |
| CTTAGGAAGCGAATAAGAAT+AGG | + | chr4_2:58660714-58660733 | None:intergenic | 35.0% | |
| CTATTCTTATTCGCTTCCTA+AGG | - | chr4_2:58660712-58660731 | Msa0610790:CDS | 35.0% | |
| ! | TATTCGCTTCCTAAGGATTT+TGG | - | chr4_2:58660719-58660738 | Msa0610790:CDS | 35.0% |
| ! | ACTGATTTCACATGTAATGC+TGG | - | chr4_2:58660755-58660774 | Msa0610790:CDS | 35.0% |
| CTGATACTTAGTTATGCACT+TGG | - | chr4_2:58660790-58660809 | Msa0610790:CDS | 35.0% | |
| AAGACAGTAAGGCAAGTATT+TGG | + | chr4_2:58660829-58660848 | None:intergenic | 35.0% | |
| ! | TGTAGTCGTCTTTGAGTTCA+CGG | + | chr4_2:58659040-58659059 | None:intergenic | 40.0% |
| TTCGATTTCAACAAGGTCGA+TGG | + | chr4_2:58659144-58659163 | None:intergenic | 40.0% | |
| GACGTTGGATGTTAGTAGTA+AGG | - | chr4_2:58659343-58659362 | Msa0610790:CDS | 40.0% | |
| GATGCTTCTGTTGAATCTGA+TGG | - | chr4_2:58659416-58659435 | Msa0610790:intron | 40.0% | |
| CTTCTGTTGAATCTGATGGA+AGG | - | chr4_2:58659420-58659439 | Msa0610790:intron | 40.0% | |
| GTTGAATCTGATGGAAGGTT+CGG | - | chr4_2:58659425-58659444 | Msa0610790:intron | 40.0% | |
| GTGATTGTGTGTATGGGTTT+AGG | - | chr4_2:58659567-58659586 | Msa0610790:intron | 40.0% | |
| ! | GTGTGTATGGGTTTAGGTTT+AGG | - | chr4_2:58659573-58659592 | Msa0610790:intron | 40.0% |
| !!! | CAGTTTTGTTTTAGGCCCTT+TGG | - | chr4_2:58659618-58659637 | Msa0610790:intron | 40.0% |
| ATGCTACAAGCACTTCCAAA+GGG | + | chr4_2:58659636-58659655 | None:intergenic | 40.0% | |
| TATGCTACAAGCACTTCCAA+AGG | + | chr4_2:58659637-58659656 | None:intergenic | 40.0% | |
| ! | GAAGCTATCGTAGAGAGTTT+TGG | - | chr4_2:58659719-58659738 | Msa0610790:intron | 40.0% |
| AATAAGCTGGAAACAGCTTG+TGG | - | chr4_2:58659743-58659762 | Msa0610790:intron | 40.0% | |
| TACCAAGCTAAGCATTTCTG+AGG | + | chr4_2:58659794-58659813 | None:intergenic | 40.0% | |
| TTGTAGGATCTTTGGGTGAA+CGG | - | chr4_2:58659955-58659974 | Msa0610790:intron | 40.0% | |
| CTACCATGAAAAGATACGCT+GGG | - | chr4_2:58660230-58660249 | Msa0610790:intron | 40.0% | |
| TCCCTCAGCATCAATGAAAA+TGG | + | chr4_2:58660384-58660403 | None:intergenic | 40.0% | |
| !! | TGCTGAGGGAGTTTTAATGT+TGG | - | chr4_2:58660394-58660413 | Msa0610790:intron | 40.0% |
| !! | GCTGAGGGAGTTTTAATGTT+GGG | - | chr4_2:58660395-58660414 | Msa0610790:intron | 40.0% |
| ATCATTGTGAAGTTGAGGAG+AGG | - | chr4_2:58660475-58660494 | Msa0610790:CDS | 40.0% | |
| ATGAAAGTAACAGTTGCTGC+TGG | + | chr4_2:58660565-58660584 | None:intergenic | 40.0% | |
| AATGGAGTCTTTGACACTTG+AGG | - | chr4_2:58660618-58660637 | Msa0610790:CDS | 40.0% | |
| ACTTGAGGAGAAAAAGGAGT+GGG | - | chr4_2:58660633-58660652 | Msa0610790:CDS | 40.0% | |
| !!! | GCTTCCTAAGGATTTTGGTT+AGG | - | chr4_2:58660724-58660743 | Msa0610790:CDS | 40.0% |
| TGTGCCTAACCAAAATCCTT+AGG | + | chr4_2:58660731-58660750 | None:intergenic | 40.0% | |
| ! | TGTAGTCGTCTTTGAGTTCA+CGG | + | chr4_2:58659040-58659059 | None:intergenic | 40.0% |
| TTCGATTTCAACAAGGTCGA+TGG | + | chr4_2:58659144-58659163 | None:intergenic | 40.0% | |
| GACGTTGGATGTTAGTAGTA+AGG | - | chr4_2:58659343-58659362 | Msa0610790:CDS | 40.0% | |
| GATGCTTCTGTTGAATCTGA+TGG | - | chr4_2:58659416-58659435 | Msa0610790:intron | 40.0% | |
| CTTCTGTTGAATCTGATGGA+AGG | - | chr4_2:58659420-58659439 | Msa0610790:intron | 40.0% | |
| GTTGAATCTGATGGAAGGTT+CGG | - | chr4_2:58659425-58659444 | Msa0610790:intron | 40.0% | |
| GTGATTGTGTGTATGGGTTT+AGG | - | chr4_2:58659567-58659586 | Msa0610790:intron | 40.0% | |
| ! | GTGTGTATGGGTTTAGGTTT+AGG | - | chr4_2:58659573-58659592 | Msa0610790:intron | 40.0% |
| !!! | CAGTTTTGTTTTAGGCCCTT+TGG | - | chr4_2:58659618-58659637 | Msa0610790:intron | 40.0% |
| ATGCTACAAGCACTTCCAAA+GGG | + | chr4_2:58659636-58659655 | None:intergenic | 40.0% | |
| TATGCTACAAGCACTTCCAA+AGG | + | chr4_2:58659637-58659656 | None:intergenic | 40.0% | |
| ! | GAAGCTATCGTAGAGAGTTT+TGG | - | chr4_2:58659719-58659738 | Msa0610790:intron | 40.0% |
| AATAAGCTGGAAACAGCTTG+TGG | - | chr4_2:58659743-58659762 | Msa0610790:intron | 40.0% | |
| TACCAAGCTAAGCATTTCTG+AGG | + | chr4_2:58659794-58659813 | None:intergenic | 40.0% | |
| TTGTAGGATCTTTGGGTGAA+CGG | - | chr4_2:58659955-58659974 | Msa0610790:intron | 40.0% | |
| CTACCATGAAAAGATACGCT+GGG | - | chr4_2:58660230-58660249 | Msa0610790:intron | 40.0% | |
| TCCCTCAGCATCAATGAAAA+TGG | + | chr4_2:58660384-58660403 | None:intergenic | 40.0% | |
| !! | TGCTGAGGGAGTTTTAATGT+TGG | - | chr4_2:58660394-58660413 | Msa0610790:intron | 40.0% |
| !! | GCTGAGGGAGTTTTAATGTT+GGG | - | chr4_2:58660395-58660414 | Msa0610790:intron | 40.0% |
| ATCATTGTGAAGTTGAGGAG+AGG | - | chr4_2:58660475-58660494 | Msa0610790:CDS | 40.0% | |
| ATGAAAGTAACAGTTGCTGC+TGG | + | chr4_2:58660565-58660584 | None:intergenic | 40.0% | |
| AATGGAGTCTTTGACACTTG+AGG | - | chr4_2:58660618-58660637 | Msa0610790:CDS | 40.0% | |
| ACTTGAGGAGAAAAAGGAGT+GGG | - | chr4_2:58660633-58660652 | Msa0610790:CDS | 40.0% | |
| !!! | GCTTCCTAAGGATTTTGGTT+AGG | - | chr4_2:58660724-58660743 | Msa0610790:CDS | 40.0% |
| TGTGCCTAACCAAAATCCTT+AGG | + | chr4_2:58660731-58660750 | None:intergenic | 40.0% | |
| GATGAACTCGTCGTTCAGAA+CGG | + | chr4_2:58659177-58659196 | None:intergenic | 45.0% | |
| ! | TGTGATGCTTGTGATGGTGA+TGG | - | chr4_2:58659263-58659282 | Msa0610790:CDS | 45.0% |
| !! | GTGTATAACGGATCAGACGT+TGG | - | chr4_2:58659328-58659347 | Msa0610790:CDS | 45.0% |
| AGCCTCAGAAATGCTTAGCT+TGG | - | chr4_2:58659789-58659808 | Msa0610790:intron | 45.0% | |
| GAACAAGGGCCTGTTTGTAT+TGG | + | chr4_2:58659833-58659852 | None:intergenic | 45.0% | |
| ! | ACAGGCCCTTGTTCTCATTT+TGG | - | chr4_2:58659839-58659858 | Msa0610790:intron | 45.0% |
| !!! | GACATGCATGGGTTTTGTTC+TGG | - | chr4_2:58659901-58659920 | Msa0610790:intron | 45.0% |
| ATGCGTATAACAAGGCCCTT+TGG | - | chr4_2:58660091-58660110 | Msa0610790:intron | 45.0% | |
| TGCGTATAACAAGGCCCTTT+GGG | - | chr4_2:58660092-58660111 | Msa0610790:intron | 45.0% | |
| GCTACCATGAAAAGATACGC+TGG | - | chr4_2:58660229-58660248 | Msa0610790:intron | 45.0% | |
| ! | CTTCCCAGCGTATCTTTTCA+TGG | + | chr4_2:58660236-58660255 | None:intergenic | 45.0% |
| ! | AAGATACGCTGGGAAGTGTA+TGG | - | chr4_2:58660240-58660259 | Msa0610790:intron | 45.0% |
| TCGGTAAGGATCATGCCAAA+TGG | - | chr4_2:58660536-58660555 | Msa0610790:CDS | 45.0% | |
| CACTTGAGGAGAAAAAGGAG+TGG | - | chr4_2:58660632-58660651 | Msa0610790:CDS | 45.0% | |
| TATTGATCCTGTCACACAGC+AGG | - | chr4_2:58660684-58660703 | Msa0610790:CDS | 45.0% | |
| GATGAACTCGTCGTTCAGAA+CGG | + | chr4_2:58659177-58659196 | None:intergenic | 45.0% | |
| ! | TGTGATGCTTGTGATGGTGA+TGG | - | chr4_2:58659263-58659282 | Msa0610790:CDS | 45.0% |
| !! | GTGTATAACGGATCAGACGT+TGG | - | chr4_2:58659328-58659347 | Msa0610790:CDS | 45.0% |
| AGCCTCAGAAATGCTTAGCT+TGG | - | chr4_2:58659789-58659808 | Msa0610790:intron | 45.0% | |
| GAACAAGGGCCTGTTTGTAT+TGG | + | chr4_2:58659833-58659852 | None:intergenic | 45.0% | |
| ! | ACAGGCCCTTGTTCTCATTT+TGG | - | chr4_2:58659839-58659858 | Msa0610790:intron | 45.0% |
| !!! | GACATGCATGGGTTTTGTTC+TGG | - | chr4_2:58659901-58659920 | Msa0610790:intron | 45.0% |
| ATGCGTATAACAAGGCCCTT+TGG | - | chr4_2:58660091-58660110 | Msa0610790:intron | 45.0% | |
| TGCGTATAACAAGGCCCTTT+GGG | - | chr4_2:58660092-58660111 | Msa0610790:intron | 45.0% | |
| GCTACCATGAAAAGATACGC+TGG | - | chr4_2:58660229-58660248 | Msa0610790:intron | 45.0% | |
| ! | CTTCCCAGCGTATCTTTTCA+TGG | + | chr4_2:58660236-58660255 | None:intergenic | 45.0% |
| ! | AAGATACGCTGGGAAGTGTA+TGG | - | chr4_2:58660240-58660259 | Msa0610790:intron | 45.0% |
| TCGGTAAGGATCATGCCAAA+TGG | - | chr4_2:58660536-58660555 | Msa0610790:CDS | 45.0% | |
| CACTTGAGGAGAAAAAGGAG+TGG | - | chr4_2:58660632-58660651 | Msa0610790:CDS | 45.0% | |
| TATTGATCCTGTCACACAGC+AGG | - | chr4_2:58660684-58660703 | Msa0610790:CDS | 45.0% | |
| ! | AGTTCACGGATTTTCACGCG+CGG | + | chr4_2:58659026-58659045 | None:intergenic | 50.0% |
| GATGGCGATGGTAGGAACTT+CGG | + | chr4_2:58659126-58659145 | None:intergenic | 50.0% | |
| TTCAACAAGGTCGATGGCGA+TGG | + | chr4_2:58659138-58659157 | None:intergenic | 50.0% | |
| GAGTTCATCGCTCACAGACT+CGG | - | chr4_2:58659188-58659207 | Msa0610790:CDS | 50.0% | |
| CGTGACTGTGATGCTTGTGA+TGG | - | chr4_2:58659257-58659276 | Msa0610790:CDS | 50.0% | |
| CTCCGATCATACCGTTACTC+CGG | - | chr4_2:58659376-58659395 | Msa0610790:CDS | 50.0% | |
| CACCGGAGTAACGGTATGAT+CGG | + | chr4_2:58659381-58659400 | None:intergenic | 50.0% | |
| AGGAACATCCACCGGAGTAA+CGG | + | chr4_2:58659390-58659409 | None:intergenic | 50.0% | |
| !! | TCAACAGAAGCATCACCACC+AGG | + | chr4_2:58659410-58659429 | None:intergenic | 50.0% |
| TGTGAAGTTGAGGAGAGGTC+AGG | - | chr4_2:58660480-58660499 | Msa0610790:CDS | 50.0% | |
| TGAGACTGAGAGCGATTGCT+AGG | - | chr4_2:58660506-58660525 | Msa0610790:CDS | 50.0% | |
| ACTGAGAGCGATTGCTAGGA+AGG | - | chr4_2:58660510-58660529 | Msa0610790:CDS | 50.0% | |
| CTGAGAGCGATTGCTAGGAA+GGG | - | chr4_2:58660511-58660530 | Msa0610790:CDS | 50.0% | |
| TGAGAGCGATTGCTAGGAAG+GGG | - | chr4_2:58660512-58660531 | Msa0610790:CDS | 50.0% | |
| AGTTGCTGCTGGTGACCATT+TGG | + | chr4_2:58660554-58660573 | None:intergenic | 50.0% | |
| TGAGGAGAAAAAGGAGTGGG+TGG | - | chr4_2:58660636-58660655 | Msa0610790:CDS | 50.0% | |
| ! | AGTTCACGGATTTTCACGCG+CGG | + | chr4_2:58659026-58659045 | None:intergenic | 50.0% |
| GATGGCGATGGTAGGAACTT+CGG | + | chr4_2:58659126-58659145 | None:intergenic | 50.0% | |
| TTCAACAAGGTCGATGGCGA+TGG | + | chr4_2:58659138-58659157 | None:intergenic | 50.0% | |
| GAGTTCATCGCTCACAGACT+CGG | - | chr4_2:58659188-58659207 | Msa0610790:CDS | 50.0% | |
| CGTGACTGTGATGCTTGTGA+TGG | - | chr4_2:58659257-58659276 | Msa0610790:CDS | 50.0% | |
| CTCCGATCATACCGTTACTC+CGG | - | chr4_2:58659376-58659395 | Msa0610790:CDS | 50.0% | |
| CACCGGAGTAACGGTATGAT+CGG | + | chr4_2:58659381-58659400 | None:intergenic | 50.0% | |
| AGGAACATCCACCGGAGTAA+CGG | + | chr4_2:58659390-58659409 | None:intergenic | 50.0% | |
| !! | TCAACAGAAGCATCACCACC+AGG | + | chr4_2:58659410-58659429 | None:intergenic | 50.0% |
| TGTGAAGTTGAGGAGAGGTC+AGG | - | chr4_2:58660480-58660499 | Msa0610790:CDS | 50.0% | |
| TGAGACTGAGAGCGATTGCT+AGG | - | chr4_2:58660506-58660525 | Msa0610790:CDS | 50.0% | |
| ACTGAGAGCGATTGCTAGGA+AGG | - | chr4_2:58660510-58660529 | Msa0610790:CDS | 50.0% | |
| CTGAGAGCGATTGCTAGGAA+GGG | - | chr4_2:58660511-58660530 | Msa0610790:CDS | 50.0% | |
| TGAGAGCGATTGCTAGGAAG+GGG | - | chr4_2:58660512-58660531 | Msa0610790:CDS | 50.0% | |
| AGTTGCTGCTGGTGACCATT+TGG | + | chr4_2:58660554-58660573 | None:intergenic | 50.0% | |
| TGAGGAGAAAAAGGAGTGGG+TGG | - | chr4_2:58660636-58660655 | Msa0610790:CDS | 50.0% | |
| CGACGCGCCTTCCATTGTTA+AGG | + | chr4_2:58658991-58659010 | None:intergenic | 55.0% | |
| CTTCGGAAATCATCACGCGC+CGG | + | chr4_2:58659109-58659128 | None:intergenic | 55.0% | |
| ACAAGGTCGATGGCGATGGT+AGG | + | chr4_2:58659134-58659153 | None:intergenic | 55.0% | |
| ATGGCACGTTCGCTTGTGAG+TGG | + | chr4_2:58659221-58659240 | None:intergenic | 55.0% | |
| ACTCACAAGCGAACGTGCCA+TGG | - | chr4_2:58659220-58659239 | Msa0610790:CDS | 55.0% | |
| ! | ACAGTCACGTGAGAAGCGCA+TGG | + | chr4_2:58659246-58659265 | None:intergenic | 55.0% |
| CGATCATACCGTTACTCCGG+TGG | - | chr4_2:58659379-58659398 | Msa0610790:CDS | 55.0% | |
| GTTACTCCGGTGGATGTTCC+TGG | - | chr4_2:58659389-58659408 | Msa0610790:CDS | 55.0% | |
| TCACCACCAGGAACATCCAC+CGG | + | chr4_2:58659398-58659417 | None:intergenic | 55.0% | |
| GCGATTGCTAGGAAGGGGAT+CGG | - | chr4_2:58660517-58660536 | Msa0610790:CDS | 55.0% | |
| TGCTAGGAAGGGGATCGGTA+AGG | - | chr4_2:58660522-58660541 | Msa0610790:CDS | 55.0% | |
| AGGCAAACCTGCTGTGTGAC+AGG | + | chr4_2:58660694-58660713 | None:intergenic | 55.0% | |
| CGACGCGCCTTCCATTGTTA+AGG | + | chr4_2:58658991-58659010 | None:intergenic | 55.0% | |
| CTTCGGAAATCATCACGCGC+CGG | + | chr4_2:58659109-58659128 | None:intergenic | 55.0% | |
| ACAAGGTCGATGGCGATGGT+AGG | + | chr4_2:58659134-58659153 | None:intergenic | 55.0% | |
| ATGGCACGTTCGCTTGTGAG+TGG | + | chr4_2:58659221-58659240 | None:intergenic | 55.0% | |
| ACTCACAAGCGAACGTGCCA+TGG | - | chr4_2:58659220-58659239 | Msa0610790:CDS | 55.0% | |
| ! | ACAGTCACGTGAGAAGCGCA+TGG | + | chr4_2:58659246-58659265 | None:intergenic | 55.0% |
| CGATCATACCGTTACTCCGG+TGG | - | chr4_2:58659379-58659398 | Msa0610790:CDS | 55.0% | |
| GTTACTCCGGTGGATGTTCC+TGG | - | chr4_2:58659389-58659408 | Msa0610790:CDS | 55.0% | |
| TCACCACCAGGAACATCCAC+CGG | + | chr4_2:58659398-58659417 | None:intergenic | 55.0% | |
| GCGATTGCTAGGAAGGGGAT+CGG | - | chr4_2:58660517-58660536 | Msa0610790:CDS | 55.0% | |
| TGCTAGGAAGGGGATCGGTA+AGG | - | chr4_2:58660522-58660541 | Msa0610790:CDS | 55.0% | |
| AGGCAAACCTGCTGTGTGAC+AGG | + | chr4_2:58660694-58660713 | None:intergenic | 55.0% | |
| ! | ACGTGAGAAGCGCATGGCCA+TGG | + | chr4_2:58659240-58659259 | None:intergenic | 60.0% |
| ACTCCGGTGGATGTTCCTGG+TGG | - | chr4_2:58659392-58659411 | Msa0610790:CDS | 60.0% | |
| ! | ACGTGAGAAGCGCATGGCCA+TGG | + | chr4_2:58659240-58659259 | None:intergenic | 60.0% |
| ACTCCGGTGGATGTTCCTGG+TGG | - | chr4_2:58659392-58659411 | Msa0610790:CDS | 60.0% | |
| ! | CGCGTTGGCGACGCTGGCGT+CGG | + | chr4_2:58659084-58659103 | None:intergenic | 75.0% |
| CCAGCGTCGCCAACGCGCTC+CGG | - | chr4_2:58659087-58659106 | Msa0610790:three_prime_UTR | 75.0% | |
| CATCACGCGCCGGAGCGCGT+TGG | + | chr4_2:58659099-58659118 | None:intergenic | 75.0% | |
| ! | CGCGTTGGCGACGCTGGCGT+CGG | + | chr4_2:58659084-58659103 | None:intergenic | 75.0% |
| CCAGCGTCGCCAACGCGCTC+CGG | - | chr4_2:58659087-58659106 | Msa0610790:three_prime_UTR | 75.0% | |
| CATCACGCGCCGGAGCGCGT+TGG | + | chr4_2:58659099-58659118 | None:intergenic | 75.0% | |
| !! | CCGGAGCGCGTTGGCGACGC+TGG | + | chr4_2:58659090-58659109 | None:intergenic | 80.0% |
| !! | CCGGAGCGCGTTGGCGACGC+TGG | + | chr4_2:58659090-58659109 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58658927 | 58660965 | 58658927 | ID=Msa0610790;Name=Msa0610790 |
| chr4_2 | mRNA | 58658927 | 58660965 | 58658927 | ID=Msa0610790-mRNA-1;Parent=Msa0610790;Name=Msa0610790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|233|236 |
| chr4_2 | exon | 58658927 | 58659424 | 58658927 | ID=Msa0610790-mRNA-1:exon:15460;Parent=Msa0610790-mRNA-1 |
| chr4_2 | exon | 58660451 | 58660965 | 58660451 | ID=Msa0610790-mRNA-1:exon:15459;Parent=Msa0610790-mRNA-1 |
| chr4_2 | five_prime_UTR | 58660897 | 58660965 | 58660897 | ID=Msa0610790-mRNA-1:five_prime_utr;Parent=Msa0610790-mRNA-1 |
| chr4_2 | CDS | 58660451 | 58660896 | 58660451 | ID=Msa0610790-mRNA-1:cds;Parent=Msa0610790-mRNA-1 |
| chr4_2 | CDS | 58659160 | 58659424 | 58659160 | ID=Msa0610790-mRNA-1:cds;Parent=Msa0610790-mRNA-1 |
| chr4_2 | three_prime_UTR | 58658927 | 58659159 | 58658927 | ID=Msa0610790-mRNA-1:three_prime_utr;Parent=Msa0610790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
