AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556060 MtrunA17_Chr4g0043761 99.057 318 3 0 1 318 1 318 0.0 648
Msa0556060 MtrunA17_Chr3g0102701 31.861 317 175 8 11 295 87 394 2.95e-37 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556060 AT2G15430.1 81.562 320 56 2 1 318 1 319 0.0 536
Msa0556060 AT2G15400.1 75.235 319 78 1 1 318 1 319 2.80e-177 493
Msa0556060 AT2G15430.2 77.350 234 50 2 1 232 1 233 2.64e-132 376
Msa0556060 AT2G15430.3 76.763 241 53 2 1 239 1 240 3.42e-132 376
Msa0556060 AT2G15400.2 72.174 230 63 1 1 229 1 230 1.05e-117 339
Msa0556060 AT1G60620.2 30.868 311 177 7 11 295 17 315 1.37e-33 126
Msa0556060 AT1G60620.1 30.868 311 177 7 11 295 82 380 5.01e-33 125
Msa0556060 AT1G60850.2 30.225 311 178 7 11 295 75 372 8.44e-33 125
Msa0556060 AT1G60850.4 30.225 311 178 7 11 295 75 372 8.44e-33 125
Msa0556060 AT1G60850.1 30.225 311 178 7 11 295 75 372 8.44e-33 125
Msa0556060 AT1G60850.3 34.906 212 106 5 11 196 75 280 8.72e-26 104

Find 94 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATCAATGAAGATTTAA+TGG 0.210874 4_1:-54105864 Msa0556060:CDS
GTTCAGTTGAGTTTCATCTT+AGG 0.271624 4_1:-54107164 Msa0556060:CDS
TTTGACACTTGAGGAGAAAA+AGG 0.302144 4_1:-54105837 Msa0556060:CDS
TAGTAGTAACTGAGCATCTT+AGG 0.304736 4_1:+54104084 None:intergenic
GTTACTCCGGTGGATGTTCC+TGG 0.334842 4_1:-54107075 Msa0556060:CDS
CAAGATTAAGTTGAAGCTTT+GGG 0.338217 4_1:-54103947 Msa0556060:three_prime_UTR
ACTTGATTAGAATATGCTTT+TGG 0.338370 4_1:-54103834 Msa0556060:three_prime_UTR
CCGGAGCGCGTTGGCGACGC+TGG 0.342082 4_1:+54107377 None:intergenic
CACATTTGGGGTTTGAGAAA+AGG 0.348298 4_1:-54107543 Msa0556060:five_prime_UTR
TGCTCAGTTACTACTATATT+AGG 0.356880 4_1:-54104077 Msa0556060:three_prime_UTR
CTTCTGCTTGAGAATTTCAA+TGG 0.357410 4_1:+54104280 None:intergenic
CCAGCGTCGCCAACGCGCTC+CGG 0.359601 4_1:-54107377 Msa0556060:CDS
GTTGAAGCTGATGATCAATT+TGG 0.361165 4_1:-54104227 Msa0556060:CDS
TCAAGATTAAGTTGAAGCTT+TGG 0.372115 4_1:-54103948 Msa0556060:three_prime_UTR
TTCAGTTGAGTTTCATCTTA+GGG 0.374933 4_1:-54107163 Msa0556060:CDS
TGTAGTCGTCTTTGAGTTCA+CGG 0.407857 4_1:+54107427 None:intergenic
ACATTTGGGGTTTGAGAAAA+GGG 0.414315 4_1:-54107542 Msa0556060:five_prime_UTR
GTTAAGGAGAAAGATGAATT+CGG 0.436629 4_1:+54107492 None:intergenic
CGCGTTGGCGACGCTGGCGT+CGG 0.437447 4_1:+54107383 None:intergenic
GCAGAAGCAATGGGAAAGCC+TGG 0.442666 4_1:-54104392 Msa0556060:CDS
TCATCATAACTATATGCCTC+AGG 0.443043 4_1:+54104431 None:intergenic
AGTTGCTGCTGGTGACCATT+TGG 0.448661 4_1:+54105913 None:intergenic
CGACGCGCCTTCCATTGTTA+AGG 0.464353 4_1:+54107476 None:intergenic
AGGCAAACCTGCTGTGTGAC+AGG 0.471461 4_1:+54105773 None:intergenic
GACGTTGGATGTTAGTAGTA+AGG 0.475900 4_1:-54107121 Msa0556060:CDS
TGAAATTCTCAAGCAGAAGC+TGG 0.482693 4_1:-54104276 Msa0556060:CDS
ACTGAGAGCGATTGCTAGGA+AGG 0.484416 4_1:-54105954 Msa0556060:CDS
TGATGATCAATTTGGTGAGC+TGG 0.488837 4_1:-54104219 Msa0556060:CDS
TTGAGATGCTTTGACTGCTC+CGG 0.496041 4_1:+54104316 None:intergenic
TCTTTCTCCTTAACAATGGA+AGG 0.498182 4_1:-54107483 Msa0556060:exon
CTAAGAGCAACTCCATTGCT+TGG 0.501928 4_1:-54103862 Msa0556060:three_prime_UTR
TCTTCATTGATGTGAATGTC+TGG 0.502428 4_1:+54105872 None:intergenic
TCTTAGGGTTAAGTGTATAA+CGG 0.507140 4_1:-54107148 Msa0556060:CDS
ACGTGAGAAGCGCATGGCCA+TGG 0.507484 4_1:+54107227 None:intergenic
ATGAATTCGGAGAAGAAATG+TGG 0.513919 4_1:+54107505 None:intergenic
TGAGACTGAGAGCGATTGCT+AGG 0.516563 4_1:-54105958 Msa0556060:CDS
ATCAAGAAAGCAGAAGCAAT+GGG 0.525337 4_1:-54104401 Msa0556060:CDS
TGTGAAGTTGAGGAGAGGTC+AGG 0.526667 4_1:-54105984 Msa0556060:CDS
TATTGATCCTGTCACACAGC+AGG 0.526854 4_1:-54105780 Msa0556060:intron
AATGGAGTCTTTGACACTTG+AGG 0.531173 4_1:-54105846 Msa0556060:CDS
TTCATCTTTCTCCTTAACAA+TGG 0.533416 4_1:-54107487 Msa0556060:exon
ATAACTAGATTTATGTTACC+TGG 0.534632 4_1:-54104045 Msa0556060:three_prime_UTR
TTCAACAAGGTCGATGGCGA+TGG 0.534984 4_1:+54107329 None:intergenic
GCAGTTATTTCTATAAGCCC+AGG 0.541886 4_1:+54104374 None:intergenic
TTCGATTTCAACAAGGTCGA+TGG 0.544241 4_1:+54107323 None:intergenic
GATGCTTCTGTTGAATCTGA+TGG 0.545347 4_1:-54107048 Msa0556060:CDS
GGATTATCATTGTGAAGTTG+AGG 0.552832 4_1:-54105994 Msa0556060:CDS
TCAATATCAAAGACACGAGT+AGG 0.554647 4_1:+54105797 None:intergenic
TCGGTAAGGATCATGCCAAA+TGG 0.554925 4_1:-54105928 Msa0556060:CDS
TGAGAGCGATTGCTAGGAAG+GGG 0.558513 4_1:-54105952 Msa0556060:CDS
CATCACGCGCCGGAGCGCGT+TGG 0.561690 4_1:+54107368 None:intergenic
ACTCACAAGCGAACGTGCCA+TGG 0.569511 4_1:-54107244 Msa0556060:CDS
CACCGGAGTAACGGTATGAT+CGG 0.570614 4_1:+54107086 None:intergenic
CTGAGAGCGATTGCTAGGAA+GGG 0.570973 4_1:-54105953 Msa0556060:CDS
AACTCTTTGAATCAAATATG+CGG 0.573333 4_1:-54103998 Msa0556060:three_prime_UTR
CTTCTGTTGAATCTGATGGA+AGG 0.575113 4_1:-54107044 Msa0556060:intron
CGATCATACCGTTACTCCGG+TGG 0.575290 4_1:-54107085 Msa0556060:CDS
GATCAAGAAAGCAGAAGCAA+TGG 0.576120 4_1:-54104402 Msa0556060:CDS
TGCTAGGAAGGGGATCGGTA+AGG 0.577965 4_1:-54105942 Msa0556060:CDS
TTAACTCAACAGCTGAAATG+TGG 0.580778 4_1:-54104123 Msa0556060:three_prime_UTR
CAGAAGCAATGGGAAAGCCT+GGG 0.582279 4_1:-54104391 Msa0556060:CDS
ATGGCACGTTCGCTTGTGAG+TGG 0.583334 4_1:+54107246 None:intergenic
GAGTTCATCGCTCACAGACT+CGG 0.584109 4_1:-54107276 Msa0556060:CDS
AGGAACATCCACCGGAGTAA+CGG 0.584181 4_1:+54107077 None:intergenic
ACCTGGTTTGCTAGAAACAG+TGG 0.591272 4_1:-54104028 Msa0556060:three_prime_UTR
ACAAGGTCGATGGCGATGGT+AGG 0.593898 4_1:+54107333 None:intergenic
GATGAACTCGTCGTTCAGAA+CGG 0.596567 4_1:+54107290 None:intergenic
CGTGACTGTGATGCTTGTGA+TGG 0.599792 4_1:-54107207 Msa0556060:CDS
GATGATCAATTTGGTGAGCT+GGG 0.599917 4_1:-54104218 Msa0556060:CDS
ACCACTGTTTCTAGCAAACC+AGG 0.604249 4_1:+54104027 None:intergenic
ATCAAGTGTGAACCAAGCAA+TGG 0.609333 4_1:+54103850 None:intergenic
GATGGCGATGGTAGGAACTT+CGG 0.612991 4_1:+54107341 None:intergenic
CATCATAACTATATGCCTCA+GGG 0.615098 4_1:+54104432 None:intergenic
TCAACAGAAGCATCACCACC+AGG 0.615579 4_1:+54107057 None:intergenic
TGAATTCGGAGAAGAAATGT+GGG 0.617527 4_1:+54107506 None:intergenic
TGTGATGCTTGTGATGGTGA+TGG 0.622311 4_1:-54107201 Msa0556060:CDS
CTCCGATCATACCGTTACTC+CGG 0.622448 4_1:-54107088 Msa0556060:CDS
TCACCACCAGGAACATCCAC+CGG 0.625792 4_1:+54107069 None:intergenic
GCGATTGCTAGGAAGGGGAT+CGG 0.627906 4_1:-54105947 Msa0556060:CDS
ATCATTGTGAAGTTGAGGAG+AGG 0.635073 4_1:-54105989 Msa0556060:CDS
ATGAAAGTAACAGTTGCTGC+TGG 0.644886 4_1:+54105902 None:intergenic
GGCATATAGTTATGATGATG+AGG 0.651134 4_1:-54104426 Msa0556060:CDS
ACAGTCACGTGAGAAGCGCA+TGG 0.655640 4_1:+54107221 None:intergenic
CTTCGGAAATCATCACGCGC+CGG 0.659935 4_1:+54107358 None:intergenic
AGTTCACTTCGATTTCAACA+AGG 0.663781 4_1:+54107316 None:intergenic
TGAGCATCTTAGGTTCAAAG+AGG 0.670782 4_1:+54104094 None:intergenic
ATAGTGAACAATCACATTTG+GGG 0.682011 4_1:-54107555 None:intergenic
AGCAGAAGCTGGATGCTGTG+AGG 0.686847 4_1:-54104265 Msa0556060:CDS
GGTGGTGGTAGTTGACCCTG+AGG 0.702152 4_1:-54104447 Msa0556060:CDS
GTGTATAACGGATCAGACGT+TGG 0.703684 4_1:-54107136 Msa0556060:CDS
GAGCTGGGTGCACATATGCG+AGG 0.705973 4_1:-54104203 Msa0556060:CDS
CTGGGTGCACATATGCGAGG+AGG 0.741311 4_1:-54104200 Msa0556060:CDS
TGTGAGGCTATCTGAAGACA+CGG 0.745035 4_1:-54104249 Msa0556060:CDS
ACTCCGGTGGATGTTCCTGG+TGG 0.749174 4_1:-54107072 Msa0556060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAAAAAACAAAAT+AGG + chr4_1:54104347-54104366 None:intergenic 10.0%
!!! AAAAAATCAGTTTTTTCTAA+TGG - chr4_1:54104384-54104403 Msa0556060:CDS 15.0%
!!! AAAAATCAGTTTTTTCTAAT+GGG - chr4_1:54104385-54104404 Msa0556060:CDS 15.0%
!! GTAAATATGATATTAATATC+TGG - chr4_1:54106477-54106496 Msa0556060:intron 15.0%
!!! AAGTAACAATGAATTTTTTA+AGG + chr4_1:54106841-54106860 None:intergenic 15.0%
!!! CTGATTTTTTTTTCTCATTA+GGG + chr4_1:54104374-54104393 None:intergenic 20.0%
!!! ACTGATTTTTTTTTCTCATT+AGG + chr4_1:54104375-54104394 None:intergenic 20.0%
!!! TATAAGCTATTTCTATAACA+AGG - chr4_1:54104556-54104575 Msa0556060:intron 20.0%
!!! CTTTTGATTTTGTGTTTAAA+TGG - chr4_1:54105739-54105758 Msa0556060:intron 20.0%
!! GAATCTATAATTAGACATAA+TGG + chr4_1:54106118-54106137 None:intergenic 20.0%
!! AGGAAAATACCAAAAAATTA+AGG - chr4_1:54106175-54106194 Msa0556060:intron 20.0%
!! AAATACCAAAAAATTAAGGT+TGG - chr4_1:54106179-54106198 Msa0556060:intron 20.0%
!!! TTTTTCCAACCTTAATTTTT+TGG + chr4_1:54106187-54106206 None:intergenic 20.0%
!!! GTGATTTTTTTGTATTGATT+AGG - chr4_1:54106890-54106909 Msa0556060:intron 20.0%
!!! ATTTTTTTGTATTGATTAGG+TGG - chr4_1:54106893-54106912 Msa0556060:intron 20.0%
! TCAAATAAACCAATACAAAC+AGG - chr4_1:54104715-54104734 Msa0556060:intron 25.0%
!!! TTTGGTTTGATGTTTTCAAA+TGG - chr4_1:54104751-54104770 Msa0556060:intron 25.0%
!!! TTGGTTTGATGTTTTCAAAT+GGG - chr4_1:54104752-54104771 Msa0556060:intron 25.0%
! AATTAAGCTGTTTACCTATA+GGG + chr4_1:54104932-54104951 None:intergenic 25.0%
! AAATTAAGCTGTTTACCTAT+AGG + chr4_1:54104933-54104952 None:intergenic 25.0%
! TAAGCTATGTCTATAACAAA+AGG - chr4_1:54105052-54105071 Msa0556060:intron 25.0%
!! AATGAGATTAAAGGTATGTT+TGG + chr4_1:54105237-54105256 None:intergenic 25.0%
! TACCTTTAATCTCATTTAGA+TGG - chr4_1:54105241-54105260 Msa0556060:intron 25.0%
! AACCATCTAAATGAGATTAA+AGG + chr4_1:54105246-54105265 None:intergenic 25.0%
!!! GTTTTAATGTTGGGTTTATT+CGG - chr4_1:54105298-54105317 Msa0556060:intron 25.0%
!!! TTTTTGTTTATGCTGAATGT+AGG - chr4_1:54105340-54105359 Msa0556060:intron 25.0%
!!! TTTTGTTTATGCTGAATGTA+GGG - chr4_1:54105341-54105360 Msa0556060:intron 25.0%
! TCACATCAATGAAGATTTAA+TGG - chr4_1:54105494-54105513 Msa0556060:intron 25.0%
!!! ATGTTTTGAATAGTTCTTGT+GGG - chr4_1:54105964-54105983 Msa0556060:CDS 25.0%
! AAGATCATATCAGAAAGTAA+AGG + chr4_1:54105997-54106016 None:intergenic 25.0%
! TTACAAACAATCACAAATAG+AGG - chr4_1:54106045-54106064 Msa0556060:intron 25.0%
! TTGATCTTAGAACAAATGTT+GGG - chr4_1:54106384-54106403 Msa0556060:intron 25.0%
! CCTAAGAATCATTATCAAAT+TGG + chr4_1:54106440-54106459 None:intergenic 25.0%
!!! CCAATTTGATAATGATTCTT+AGG - chr4_1:54106437-54106456 Msa0556060:intron 25.0%
!! TAATGATTCTTAGGCTTTAA+AGG - chr4_1:54106446-54106465 Msa0556060:intron 25.0%
!! ATTTAAAATCCTGCTTATGA+TGG - chr4_1:54106500-54106519 Msa0556060:intron 25.0%
!! ATAAGAGTATGTAAAACACT+TGG + chr4_1:54106644-54106663 None:intergenic 25.0%
!! TCGTACTTCAAATTCATTTT+AGG - chr4_1:54106685-54106704 Msa0556060:intron 25.0%
! TTTATTACTATGAATCCACT+AGG - chr4_1:54106718-54106737 Msa0556060:intron 25.0%
!!! TTTTAAGGAACAATACATCA+AGG + chr4_1:54106826-54106845 None:intergenic 25.0%
! GTACAATAAATTACCTTAAG+CGG + chr4_1:54106866-54106885 None:intergenic 25.0%
! ATAACTAGATTTATGTTACC+TGG - chr4_1:54107313-54107332 Msa0556060:CDS 25.0%
! AACTCTTTGAATCAAATATG+CGG - chr4_1:54107360-54107379 Msa0556060:CDS 25.0%
!! ACTTGATTAGAATATGCTTT+TGG - chr4_1:54107524-54107543 Msa0556060:five_prime_UTR 25.0%
GTTAAGGAGAAAGATGAATT+CGG + chr4_1:54103869-54103888 None:intergenic 30.0%
TTCATCTTTCTCCTTAACAA+TGG - chr4_1:54103871-54103890 Msa0556060:three_prime_UTR 30.0%
TTCAGTTGAGTTTCATCTTA+GGG - chr4_1:54104195-54104214 Msa0556060:exon 30.0%
TCTTAGGGTTAAGTGTATAA+CGG - chr4_1:54104210-54104229 Msa0556060:CDS 30.0%
! GGTTTTCTTAGATTTCAACT+GGG - chr4_1:54104406-54104425 Msa0556060:CDS 30.0%
TTTGAATGTGATTGTGTGTA+TGG - chr4_1:54104454-54104473 Msa0556060:intron 30.0%
TTGAATGTGATTGTGTGTAT+GGG - chr4_1:54104455-54104474 Msa0556060:intron 30.0%
!!! AGAACGAACAGTTTTGTTTT+AGG - chr4_1:54104504-54104523 Msa0556060:intron 30.0%
TCAAACCAAAATGAGAACAA+GGG + chr4_1:54104741-54104760 None:intergenic 30.0%
ATCAAACCAAAATGAGAACA+AGG + chr4_1:54104742-54104761 None:intergenic 30.0%
! TTTTCAAATGTGACATGCAT+GGG - chr4_1:54104784-54104803 Msa0556060:intron 30.0%
AGAACAAACAGTTATGTTGT+AGG - chr4_1:54104833-54104852 Msa0556060:intron 30.0%
AGTTATGTTGTAGGATCTTT+GGG - chr4_1:54104842-54104861 Msa0556060:intron 30.0%
TATACGCATAGCTTATTCAT+AGG + chr4_1:54104974-54104993 None:intergenic 30.0%
AATAAGCTATGCGTATAACA+AGG - chr4_1:54104977-54104996 Msa0556060:intron 30.0%
! GATTAAAGGTATGTTTGGAT+TGG + chr4_1:54105232-54105251 None:intergenic 30.0%
TTTGTTTATGCTGAATGTAG+GGG - chr4_1:54105342-54105361 Msa0556060:intron 30.0%
CACAAAATCAAAAGACAGTA+AGG + chr4_1:54105733-54105752 None:intergenic 30.0%
!! GATGTTTTGAATAGTTCTTG+TGG - chr4_1:54105963-54105982 Msa0556060:CDS 30.0%
! ATCCTGATGTAGTGTTTTAT+GGG + chr4_1:54106085-54106104 None:intergenic 30.0%
! TATCCTGATGTAGTGTTTTA+TGG + chr4_1:54106086-54106105 None:intergenic 30.0%
AAGGTTGGAAAAATAGAAAG+TGG - chr4_1:54106194-54106213 Msa0556060:intron 30.0%
AGGTTGGAAAAATAGAAAGT+GGG - chr4_1:54106195-54106214 Msa0556060:intron 30.0%
CTTGATCTTAGAACAAATGT+TGG - chr4_1:54106383-54106402 Msa0556060:intron 30.0%
TGATCTTAGAACAAATGTTG+GGG - chr4_1:54106385-54106404 Msa0556060:intron 30.0%
! CATTATCAAATTGGTAGCTT+GGG + chr4_1:54106431-54106450 None:intergenic 30.0%
! TCATTATCAAATTGGTAGCT+TGG + chr4_1:54106432-54106451 None:intergenic 30.0%
TTACATACTCTTATCTTGTG+TGG - chr4_1:54106650-54106669 Msa0556060:intron 30.0%
ATTCTTGATCAATGCTAAGT+CGG - chr4_1:54106759-54106778 Msa0556060:intron 30.0%
!!! TTTTTGTATTGATTAGGTGG+TGG - chr4_1:54106896-54106915 Msa0556060:intron 30.0%
! ATTTTCACAGTTGAATCTAC+CGG - chr4_1:54107023-54107042 Msa0556060:intron 30.0%
TGCTCAGTTACTACTATATT+AGG - chr4_1:54107281-54107300 Msa0556060:CDS 30.0%
!! TCAAGATTAAGTTGAAGCTT+TGG - chr4_1:54107410-54107429 Msa0556060:CDS 30.0%
!! CAAGATTAAGTTGAAGCTTT+GGG - chr4_1:54107411-54107430 Msa0556060:CDS 30.0%
TGAATTCGGAGAAGAAATGT+GGG + chr4_1:54103855-54103874 None:intergenic 35.0%
ATGAATTCGGAGAAGAAATG+TGG + chr4_1:54103856-54103875 None:intergenic 35.0%
TCTTTCTCCTTAACAATGGA+AGG - chr4_1:54103875-54103894 Msa0556060:three_prime_UTR 35.0%
AGTTCACTTCGATTTCAACA+AGG + chr4_1:54104045-54104064 None:intergenic 35.0%
GTTCAGTTGAGTTTCATCTT+AGG - chr4_1:54104194-54104213 Msa0556060:exon 35.0%
! GGGTTTTCTTAGATTTCAAC+TGG - chr4_1:54104405-54104424 Msa0556060:CDS 35.0%
! TGTGTATGGGTTTAGGTTTA+GGG - chr4_1:54104468-54104487 Msa0556060:intron 35.0%
!!! AGAGAGTTTTGGAAATAAGC+TGG - chr4_1:54104624-54104643 Msa0556060:intron 35.0%
! GTTTTCAAATGTGACATGCA+TGG - chr4_1:54104783-54104802 Msa0556060:intron 35.0%
CAGTTATGTTGTAGGATCTT+TGG - chr4_1:54104841-54104860 Msa0556060:intron 35.0%
GTCTGTAAAAAAGACCCTAT+AGG - chr4_1:54104915-54104934 Msa0556060:intron 35.0%
AACTAGGATGTTTACCCAAA+GGG + chr4_1:54105003-54105022 None:intergenic 35.0%
TAACTAGGATGTTTACCCAA+AGG + chr4_1:54105004-54105023 None:intergenic 35.0%
TTGCTATAAAGCTCGTAACT+AGG + chr4_1:54105019-54105038 None:intergenic 35.0%
GAAAACAGCTTACAGCTTAA+TGG + chr4_1:54105099-54105118 None:intergenic 35.0%
! TTCCATTTTCATTGATGCTG+AGG - chr4_1:54105273-54105292 Msa0556060:intron 35.0%
! TCCATTTTCATTGATGCTGA+GGG - chr4_1:54105274-54105293 Msa0556060:intron 35.0%
TTAATGTTGGGTTTATTCGG+AGG - chr4_1:54105301-54105320 Msa0556060:intron 35.0%
TTGTTTATGCTGAATGTAGG+GGG - chr4_1:54105343-54105362 Msa0556060:intron 35.0%
GGATTATCATTGTGAAGTTG+AGG - chr4_1:54105364-54105383 Msa0556060:intron 35.0%
TCTTCATTGATGTGAATGTC+TGG + chr4_1:54105489-54105508 None:intergenic 35.0%
TTTGACACTTGAGGAGAAAA+AGG - chr4_1:54105521-54105540 Msa0556060:intron 35.0%
TCAATATCAAAGACACGAGT+AGG + chr4_1:54105564-54105583 None:intergenic 35.0%
CTTAGGAAGCGAATAAGAAT+AGG + chr4_1:54105608-54105627 None:intergenic 35.0%
CTATTCTTATTCGCTTCCTA+AGG - chr4_1:54105606-54105625 Msa0556060:intron 35.0%
! TATTCGCTTCCTAAGGATTT+TGG - chr4_1:54105613-54105632 Msa0556060:intron 35.0%
! ACTGATTTCACATGTAATGC+TGG - chr4_1:54105649-54105668 Msa0556060:intron 35.0%
CTGATACTTAGTTATGCACT+TGG - chr4_1:54105684-54105703 Msa0556060:intron 35.0%
AAGACAGTAAGGCAAGTATT+TGG + chr4_1:54105722-54105741 None:intergenic 35.0%
AGAGTGGAAAATGCAATTAG+AGG - chr4_1:54105897-54105916 Msa0556060:CDS 35.0%
CTTCACACTTTCATTCTAGA+AGG - chr4_1:54106019-54106038 Msa0556060:intron 35.0%
AACAATCACAAATAGAGGCA+TGG - chr4_1:54106050-54106069 Msa0556060:intron 35.0%
AAAACACTACATCAGGATAG+TGG - chr4_1:54106087-54106106 Msa0556060:intron 35.0%
AAACACTACATCAGGATAGT+GGG - chr4_1:54106088-54106107 Msa0556060:intron 35.0%
ATATGTGTGTGTACGAACTA+AGG - chr4_1:54106155-54106174 Msa0556060:intron 35.0%
GGTTGGAAAAATAGAAAGTG+GGG - chr4_1:54106196-54106215 Msa0556060:intron 35.0%
GTTGGAAAAATAGAAAGTGG+GGG - chr4_1:54106197-54106216 Msa0556060:intron 35.0%
TTGGAAAAATAGAAAGTGGG+GGG - chr4_1:54106198-54106217 Msa0556060:intron 35.0%
TTTGACTGCAAACTGTAGTA+TGG - chr4_1:54106280-54106299 Msa0556060:intron 35.0%
TTGACTGCAAACTGTAGTAT+GGG - chr4_1:54106281-54106300 Msa0556060:intron 35.0%
AGATCAAGCAATTACTAACC+AGG + chr4_1:54106371-54106390 None:intergenic 35.0%
!! CACAAGATAAAAGTACCTAG+TGG + chr4_1:54106736-54106755 None:intergenic 35.0%
AAGGAACAATACATCAAGGA+AGG + chr4_1:54106822-54106841 None:intergenic 35.0%
CATCATAACTATATGCCTCA+GGG + chr4_1:54106929-54106948 None:intergenic 35.0%
TCATCATAACTATATGCCTC+AGG + chr4_1:54106930-54106949 None:intergenic 35.0%
! GGCATATAGTTATGATGATG+AGG - chr4_1:54106932-54106951 Msa0556060:intron 35.0%
ATCAAGAAAGCAGAAGCAAT+GGG - chr4_1:54106957-54106976 Msa0556060:intron 35.0%
CTTCTGCTTGAGAATTTCAA+TGG + chr4_1:54107081-54107100 None:intergenic 35.0%
GTTGAAGCTGATGATCAATT+TGG - chr4_1:54107131-54107150 Msa0556060:CDS 35.0%
!! GGATGATTTTGAAGGATTTC+AGG - chr4_1:54107179-54107198 Msa0556060:CDS 35.0%
TTAACTCAACAGCTGAAATG+TGG - chr4_1:54107235-54107254 Msa0556060:CDS 35.0%
TAGTAGTAACTGAGCATCTT+AGG + chr4_1:54107277-54107296 None:intergenic 35.0%
! TGTAGTCGTCTTTGAGTTCA+CGG + chr4_1:54103934-54103953 None:intergenic 40.0%
TTCGATTTCAACAAGGTCGA+TGG + chr4_1:54104038-54104057 None:intergenic 40.0%
GACGTTGGATGTTAGTAGTA+AGG - chr4_1:54104237-54104256 Msa0556060:CDS 40.0%
GATGCTTCTGTTGAATCTGA+TGG - chr4_1:54104310-54104329 Msa0556060:CDS 40.0%
CTTCTGTTGAATCTGATGGA+AGG - chr4_1:54104314-54104333 Msa0556060:CDS 40.0%
GTTGAATCTGATGGAAGGTT+CGG - chr4_1:54104319-54104338 Msa0556060:CDS 40.0%
GTGATTGTGTGTATGGGTTT+AGG - chr4_1:54104461-54104480 Msa0556060:intron 40.0%
! GTGTGTATGGGTTTAGGTTT+AGG - chr4_1:54104467-54104486 Msa0556060:intron 40.0%
!!! CAGTTTTGTTTTAGGCCCTT+TGG - chr4_1:54104512-54104531 Msa0556060:intron 40.0%
ATGCTACAAGCACTTCCAAA+GGG + chr4_1:54104530-54104549 None:intergenic 40.0%
TATGCTACAAGCACTTCCAA+AGG + chr4_1:54104531-54104550 None:intergenic 40.0%
! GAAGCTATCGTAGAGAGTTT+TGG - chr4_1:54104613-54104632 Msa0556060:intron 40.0%
AATAAGCTGGAAACAGCTTG+TGG - chr4_1:54104637-54104656 Msa0556060:intron 40.0%
TACCAAGCTAAGCATTTCTG+AGG + chr4_1:54104688-54104707 None:intergenic 40.0%
TTGTAGGATCTTTGGGTGAA+CGG - chr4_1:54104849-54104868 Msa0556060:intron 40.0%
CTACCATGAAAAGATACGCT+GGG - chr4_1:54105124-54105143 Msa0556060:intron 40.0%
TCCCTCAGCATCAATGAAAA+TGG + chr4_1:54105278-54105297 None:intergenic 40.0%
!! TGCTGAGGGAGTTTTAATGT+TGG - chr4_1:54105288-54105307 Msa0556060:intron 40.0%
!! GCTGAGGGAGTTTTAATGTT+GGG - chr4_1:54105289-54105308 Msa0556060:intron 40.0%
ATCATTGTGAAGTTGAGGAG+AGG - chr4_1:54105369-54105388 Msa0556060:intron 40.0%
ATGAAAGTAACAGTTGCTGC+TGG + chr4_1:54105459-54105478 None:intergenic 40.0%
AATGGAGTCTTTGACACTTG+AGG - chr4_1:54105512-54105531 Msa0556060:intron 40.0%
ACTTGAGGAGAAAAAGGAGT+GGG - chr4_1:54105527-54105546 Msa0556060:intron 40.0%
!!! GCTTCCTAAGGATTTTGGTT+AGG - chr4_1:54105618-54105637 Msa0556060:intron 40.0%
TGTGCCTAACCAAAATCCTT+AGG + chr4_1:54105625-54105644 None:intergenic 40.0%
CCACTCTACTTCAACTCAAA+AGG + chr4_1:54105884-54105903 None:intergenic 40.0%
!!! CCTTTTGAGTTGAAGTAGAG+TGG - chr4_1:54105881-54105900 Msa0556060:CDS 40.0%
! TCACAAATAGAGGCATGGAA+CGG - chr4_1:54106055-54106074 Msa0556060:intron 40.0%
AACATTCCATGGCCAAAGTT+TGG - chr4_1:54106313-54106332 Msa0556060:intron 40.0%
TTACTAACCAGGCACTACAA+CGG + chr4_1:54106360-54106379 None:intergenic 40.0%
!! TGTTGGGGATTTGCTATACT+TGG - chr4_1:54106400-54106419 Msa0556060:intron 40.0%
GGTAAACAACCATCATAAGC+AGG + chr4_1:54106512-54106531 None:intergenic 40.0%
! TATTCTGCAGATGATGATGC+TGG + chr4_1:54106539-54106558 None:intergenic 40.0%
CTGCTGAAGCAATGCTTATA+AGG - chr4_1:54106574-54106593 Msa0556060:intron 40.0%
ACAAGTCAAACAGAACCTAG+TGG + chr4_1:54106789-54106808 None:intergenic 40.0%
! CATTGTTACTTGACCGCTTA+AGG - chr4_1:54106850-54106869 Msa0556060:intron 40.0%
GATCAAGAAAGCAGAAGCAA+TGG - chr4_1:54106956-54106975 Msa0556060:intron 40.0%
!! GCAGTTATTTCTATAAGCCC+AGG + chr4_1:54106987-54107006 None:intergenic 40.0%
TGAAATTCTCAAGCAGAAGC+TGG - chr4_1:54107082-54107101 Msa0556060:CDS 40.0%
! TGATGATCAATTTGGTGAGC+TGG - chr4_1:54107139-54107158 Msa0556060:CDS 40.0%
! GATGATCAATTTGGTGAGCT+GGG - chr4_1:54107140-54107159 Msa0556060:CDS 40.0%
TGAGCATCTTAGGTTCAAAG+AGG + chr4_1:54107267-54107286 None:intergenic 40.0%
ATCAAGTGTGAACCAAGCAA+TGG + chr4_1:54107511-54107530 None:intergenic 40.0%
GATGAACTCGTCGTTCAGAA+CGG + chr4_1:54104071-54104090 None:intergenic 45.0%
! TGTGATGCTTGTGATGGTGA+TGG - chr4_1:54104157-54104176 Msa0556060:three_prime_UTR 45.0%
!! GTGTATAACGGATCAGACGT+TGG - chr4_1:54104222-54104241 Msa0556060:CDS 45.0%
AGCCTCAGAAATGCTTAGCT+TGG - chr4_1:54104683-54104702 Msa0556060:intron 45.0%
GAACAAGGGCCTGTTTGTAT+TGG + chr4_1:54104727-54104746 None:intergenic 45.0%
! ACAGGCCCTTGTTCTCATTT+TGG - chr4_1:54104733-54104752 Msa0556060:intron 45.0%
!!! GACATGCATGGGTTTTGTTC+TGG - chr4_1:54104795-54104814 Msa0556060:intron 45.0%
ATGCGTATAACAAGGCCCTT+TGG - chr4_1:54104985-54105004 Msa0556060:intron 45.0%
TGCGTATAACAAGGCCCTTT+GGG - chr4_1:54104986-54105005 Msa0556060:intron 45.0%
GCTACCATGAAAAGATACGC+TGG - chr4_1:54105123-54105142 Msa0556060:intron 45.0%
! CTTCCCAGCGTATCTTTTCA+TGG + chr4_1:54105130-54105149 None:intergenic 45.0%
! AAGATACGCTGGGAAGTGTA+TGG - chr4_1:54105134-54105153 Msa0556060:intron 45.0%
TCGGTAAGGATCATGCCAAA+TGG - chr4_1:54105430-54105449 Msa0556060:intron 45.0%
CACTTGAGGAGAAAAAGGAG+TGG - chr4_1:54105526-54105545 Msa0556060:intron 45.0%
TATTGATCCTGTCACACAGC+AGG - chr4_1:54105578-54105597 Msa0556060:intron 45.0%
CCATCATTGACCACAGAAAG+AGG + chr4_1:54105930-54105949 None:intergenic 45.0%
CCTCTTTCTGTGGTCAATGA+TGG - chr4_1:54105927-54105946 Msa0556060:CDS 45.0%
! CACAAATAGAGGCATGGAAC+GGG - chr4_1:54106056-54106075 Msa0556060:intron 45.0%
GGCCCATAAAACACTACATC+AGG - chr4_1:54106080-54106099 Msa0556060:intron 45.0%
!! ACTACATCAGGATAGTGGGA+TGG - chr4_1:54106092-54106111 Msa0556060:intron 45.0%
GGCATGACTCAAACATTCCA+TGG - chr4_1:54106302-54106321 Msa0556060:intron 45.0%
TGGTGACCACTACCAAACTT+TGG + chr4_1:54106328-54106347 None:intergenic 45.0%
GCATTGCTTCAGCAGAAATG+AGG + chr4_1:54106569-54106588 None:intergenic 45.0%
TTGAGATGCTTTGACTGCTC+CGG + chr4_1:54107045-54107064 None:intergenic 45.0%
TGTGAGGCTATCTGAAGACA+CGG - chr4_1:54107109-54107128 Msa0556060:CDS 45.0%
! TGCGAGGAGGATGATTTTGA+AGG - chr4_1:54107171-54107190 Msa0556060:CDS 45.0%
!! ACCTGGTTTGCTAGAAACAG+TGG - chr4_1:54107330-54107349 Msa0556060:CDS 45.0%
!! ACCACTGTTTCTAGCAAACC+AGG + chr4_1:54107334-54107353 None:intergenic 45.0%
CTAAGAGCAACTCCATTGCT+TGG - chr4_1:54107496-54107515 Msa0556060:five_prime_UTR 45.0%
! AGTTCACGGATTTTCACGCG+CGG + chr4_1:54103920-54103939 None:intergenic 50.0%
GATGGCGATGGTAGGAACTT+CGG + chr4_1:54104020-54104039 None:intergenic 50.0%
TTCAACAAGGTCGATGGCGA+TGG + chr4_1:54104032-54104051 None:intergenic 50.0%
GAGTTCATCGCTCACAGACT+CGG - chr4_1:54104082-54104101 Msa0556060:three_prime_UTR 50.0%
CGTGACTGTGATGCTTGTGA+TGG - chr4_1:54104151-54104170 Msa0556060:three_prime_UTR 50.0%
CTCCGATCATACCGTTACTC+CGG - chr4_1:54104270-54104289 Msa0556060:CDS 50.0%
CACCGGAGTAACGGTATGAT+CGG + chr4_1:54104275-54104294 None:intergenic 50.0%
AGGAACATCCACCGGAGTAA+CGG + chr4_1:54104284-54104303 None:intergenic 50.0%
!! TCAACAGAAGCATCACCACC+AGG + chr4_1:54104304-54104323 None:intergenic 50.0%
TGTGAAGTTGAGGAGAGGTC+AGG - chr4_1:54105374-54105393 Msa0556060:intron 50.0%
TGAGACTGAGAGCGATTGCT+AGG - chr4_1:54105400-54105419 Msa0556060:intron 50.0%
ACTGAGAGCGATTGCTAGGA+AGG - chr4_1:54105404-54105423 Msa0556060:intron 50.0%
CTGAGAGCGATTGCTAGGAA+GGG - chr4_1:54105405-54105424 Msa0556060:intron 50.0%
TGAGAGCGATTGCTAGGAAG+GGG - chr4_1:54105406-54105425 Msa0556060:intron 50.0%
AGTTGCTGCTGGTGACCATT+TGG + chr4_1:54105448-54105467 None:intergenic 50.0%
TGAGGAGAAAAAGGAGTGGG+TGG - chr4_1:54105530-54105549 Msa0556060:intron 50.0%
AGGTGCTTGTCCTCTTTCTG+TGG - chr4_1:54105917-54105936 Msa0556060:CDS 50.0%
! AAATAGAGGCATGGAACGGG+TGG - chr4_1:54106059-54106078 Msa0556060:intron 50.0%
ATAGAAAGTGGGGGGCAAAG+TGG - chr4_1:54106206-54106225 Msa0556060:intron 50.0%
TAGAAAGTGGGGGGCAAAGT+GGG - chr4_1:54106207-54106226 Msa0556060:intron 50.0%
CCACTACCAAACTTTGGCCA+TGG + chr4_1:54106322-54106341 None:intergenic 50.0%
CCATGGCCAAAGTTTGGTAG+TGG - chr4_1:54106319-54106338 Msa0556060:intron 50.0%
! GCAGATGATGATGCTGGACA+TGG + chr4_1:54106533-54106552 None:intergenic 50.0%
CAGAAGCAATGGGAAAGCCT+GGG - chr4_1:54106967-54106986 Msa0556060:intron 50.0%
CGACGCGCCTTCCATTGTTA+AGG + chr4_1:54103885-54103904 None:intergenic 55.0%
CTTCGGAAATCATCACGCGC+CGG + chr4_1:54104003-54104022 None:intergenic 55.0%
ACAAGGTCGATGGCGATGGT+AGG + chr4_1:54104028-54104047 None:intergenic 55.0%
ATGGCACGTTCGCTTGTGAG+TGG + chr4_1:54104115-54104134 None:intergenic 55.0%
ACTCACAAGCGAACGTGCCA+TGG - chr4_1:54104114-54104133 Msa0556060:three_prime_UTR 55.0%
! ACAGTCACGTGAGAAGCGCA+TGG + chr4_1:54104140-54104159 None:intergenic 55.0%
CGATCATACCGTTACTCCGG+TGG - chr4_1:54104273-54104292 Msa0556060:CDS 55.0%
GTTACTCCGGTGGATGTTCC+TGG - chr4_1:54104283-54104302 Msa0556060:CDS 55.0%
TCACCACCAGGAACATCCAC+CGG + chr4_1:54104292-54104311 None:intergenic 55.0%
GCGATTGCTAGGAAGGGGAT+CGG - chr4_1:54105411-54105430 Msa0556060:intron 55.0%
TGCTAGGAAGGGGATCGGTA+AGG - chr4_1:54105416-54105435 Msa0556060:intron 55.0%
AGGCAAACCTGCTGTGTGAC+AGG + chr4_1:54105588-54105607 None:intergenic 55.0%
! CAGGCACTACAACGGTGTTG+CGG + chr4_1:54106352-54106371 None:intergenic 55.0%
TGCTAAGTCGGTCAGCCACT+AGG - chr4_1:54106771-54106790 Msa0556060:intron 55.0%
GCAGAAGCAATGGGAAAGCC+TGG - chr4_1:54106966-54106985 Msa0556060:intron 55.0%
AGCAGAAGCTGGATGCTGTG+AGG - chr4_1:54107093-54107112 Msa0556060:CDS 55.0%
! ACGTGAGAAGCGCATGGCCA+TGG + chr4_1:54104134-54104153 None:intergenic 60.0%
ACTCCGGTGGATGTTCCTGG+TGG - chr4_1:54104286-54104305 Msa0556060:CDS 60.0%
!! CACTACAACGGTGTTGCGGC+TGG + chr4_1:54106348-54106367 None:intergenic 60.0%
CGCAACACCGTTGTAGTGCC+TGG - chr4_1:54106350-54106369 Msa0556060:intron 60.0%
! GGTGGTGGTAGTTGACCCTG+AGG - chr4_1:54106911-54106930 Msa0556060:intron 60.0%
GAGCTGGGTGCACATATGCG+AGG - chr4_1:54107155-54107174 Msa0556060:CDS 60.0%
CTGGGTGCACATATGCGAGG+AGG - chr4_1:54107158-54107177 Msa0556060:CDS 60.0%
! CGCGTTGGCGACGCTGGCGT+CGG + chr4_1:54103978-54103997 None:intergenic 75.0%
CCAGCGTCGCCAACGCGCTC+CGG - chr4_1:54103981-54104000 Msa0556060:three_prime_UTR 75.0%
CATCACGCGCCGGAGCGCGT+TGG + chr4_1:54103993-54104012 None:intergenic 75.0%
!! CCGGAGCGCGTTGGCGACGC+TGG + chr4_1:54103984-54104003 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54103818 54107562 54103818 ID=Msa0556060;Name=Msa0556060
chr4_1 mRNA 54103818 54107562 54103818 ID=Msa0556060-mRNA-1;Parent=Msa0556060;Name=Msa0556060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=72|1|1|1|1|1|3|378|318
chr4_1 exon 54103818 54104468 54103818 ID=Msa0556060-mRNA-1:exon:15927;Parent=Msa0556060-mRNA-1
chr4_1 exon 54105781 54106018 54105781 ID=Msa0556060-mRNA-1:exon:15926;Parent=Msa0556060-mRNA-1
chr4_1 exon 54107045 54107562 54107045 ID=Msa0556060-mRNA-1:exon:15925;Parent=Msa0556060-mRNA-1
chr4_1 five_prime_UTR 54107491 54107562 54107491 ID=Msa0556060-mRNA-1:five_prime_utr;Parent=Msa0556060-mRNA-1
chr4_1 CDS 54107045 54107490 54107045 ID=Msa0556060-mRNA-1:cds;Parent=Msa0556060-mRNA-1
chr4_1 CDS 54105781 54106018 54105781 ID=Msa0556060-mRNA-1:cds;Parent=Msa0556060-mRNA-1
chr4_1 CDS 54104196 54104468 54104196 ID=Msa0556060-mRNA-1:cds;Parent=Msa0556060-mRNA-1
chr4_1 three_prime_UTR 54103818 54104195 54103818 ID=Msa0556060-mRNA-1:three_prime_utr;Parent=Msa0556060-mRNA-1
Gene Sequence

>Msa0556060

ATGGAAGGCGCGTCGTACGCACGCATGCCGCGCGTGAAAATCCGTGAACTCAAAGACGACTACATGAAGTTCGAGCTTCGCGACACCGACGCCAGCGTCGCCAACGCGCTCCGGCGCGTGATGATTTCCGAAGTTCCTACCATCGCCATCGACCTTGTTGAAATCGAAGTGAACTCTTCCGTTCTGAACGACGAGTTCATCGCTCACAGACTCGGTCTCATTCCACTCACAAGCGAACGTGCCATGGCCATGCGCTTCTCACGTGACTGTGATGCTTGTGATGGTGATGGACAGTGTGAGTATTGTTCAGTTGAGTTTCATCTTAGGGTTAAGTGTATAACGGATCAGACGTTGGATGTTAGTAGTAAGGATCTTATTAGCTCCGATCATACCGTTACTCCGGTGGATGTTCCTGGTGGTGATGCTTCTGTTGAATCTGATGGAAGGGGGATTATCATTGTGAAGTTGAGGAGAGGTCAGGAGCTGAGACTGAGAGCGATTGCTAGGAAGGGGATCGGTAAGGATCATGCCAAATGGTCACCAGCAGCAACTGTTACTTTCATGTACGAACCAGACATTCACATCAATGAAGATTTAATGGAGTCTTTGACACTTGAGGAGAAAAAGGAGTGGGTGGATAGTAGTCCTACTCGTGTCTTTGATATTGATCCTGTCACACAGCAGGTGGTGGTAGTTGACCCTGAGGCATATAGTTATGATGATGAGGTGATCAAGAAAGCAGAAGCAATGGGAAAGCCTGGGCTTATAGAAATAACTGCAAAGCAAGATAGCTTCATTTTCACAGTTGAATCTACCGGAGCAGTCAAAGCATCTCAATTATTGCTAAATTCCATTGAAATTCTCAAGCAGAAGCTGGATGCTGTGAGGCTATCTGAAGACACGGTTGAAGCTGATGATCAATTTGGTGAGCTGGGTGCACATATGCGAGGAGGATGA

Protein sequence

>Msa0556060

MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASVESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVVVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG*