AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0059110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059110 MtrunA17_Chr1g0157741 96.888 482 6 1 1 473 1 482 0.0 935
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059110 AT4G32720.2 50.985 457 158 9 1 445 1 403 1.64e-143 417
Msa0059110 AT4G32720.1 51.584 442 153 8 1 430 1 393 2.17e-141 413
Msa0059110 AT1G79880.1 41.784 426 180 11 5 427 4 364 7.80e-96 295
Msa0059110 AT1G79880.2 38.667 375 162 11 56 427 1 310 3.84e-69 224
Msa0059110 AT1G79880.3 38.243 387 166 12 56 434 1 322 6.09e-69 224
Msa0059110 AT5G46250.1 27.074 229 123 9 8 209 101 312 3.83e-12 68.6
Msa0059110 AT2G43970.2 29.452 146 88 2 2 147 185 315 3.91e-12 68.9
Msa0059110 AT2G43970.1 29.452 146 88 2 2 147 185 315 4.47e-12 68.6
Msa0059110 AT5G46250.2 29.940 167 92 5 8 166 101 250 7.49e-12 67.0
Msa0059110 AT5G46250.3 29.940 167 92 5 8 166 101 250 7.98e-12 67.0

Find 104 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGAGAGTGTAGGGTTT+TGG 0.244612 1_2:-15805239 None:intergenic
AGAAAGTATTAACTGCATTC+AGG 0.264212 1_2:+15810655 Msa0059110:exon
CGTGCTTTCTGAGCAGCTTC+AGG 0.270223 1_2:-15810043 None:intergenic
AAGGCTATAACTAAGCCTTT+AGG 0.286449 1_2:-15809270 None:intergenic
GCCGAAAAGGGCCAGGAAAC+TGG 0.288268 1_2:+15809573 Msa0059110:CDS
ACCTGCTCAATTACCTCTTC+TGG 0.299485 1_2:-15808073 None:intergenic
AACCTGTCGTATAACCTTCT+TGG 0.309750 1_2:-15805345 None:intergenic
TTTATAAGCAAATGTTAGTT+TGG 0.320143 1_2:+15810885 Msa0059110:three_prime_UTR
CTCAATTACCTCTTCTGGCT+TGG 0.321742 1_2:-15808068 None:intergenic
AGGCTATAACTAAGCCTTTA+GGG 0.335538 1_2:-15809269 None:intergenic
AAGGTTGTGTTTCAGAAGTT+TGG 0.339229 1_2:+15809654 Msa0059110:CDS
ACGTGCTGCTGCAGCCCTTT+CGG 0.339660 1_2:+15810063 Msa0059110:CDS
TGCTGCAGCCCTTTCGGAAA+AGG 0.341335 1_2:+15810069 Msa0059110:CDS
CGTAATAGAGACAATGATTC+TGG 0.344136 1_2:+15810610 Msa0059110:CDS
AAGTAAAACTAACCGGTAAC+TGG 0.344730 1_2:-15810130 None:intergenic
CTTTGCTTTGTTCCTTCAAT+CGG 0.350383 1_2:+15807035 Msa0059110:CDS
ACAGTACATAGATTTCAATA+TGG 0.354619 1_2:+15809988 Msa0059110:intron
TAACTACACAGTGGTTAGTT+TGG 0.362858 1_2:+15807012 Msa0059110:intron
GCTGCAGCCCTTTCGGAAAA+GGG 0.363306 1_2:+15810070 Msa0059110:CDS
TGAACTGCTCTTTAGTTTGA+AGG 0.365442 1_2:-15809289 None:intergenic
TCAATTACCTCTTCTGGCTT+GGG 0.381807 1_2:-15808067 None:intergenic
AAAGAGATTTAGGTTGTGTT+TGG 0.402101 1_2:-15805216 None:intergenic
TTTGGTAGTATATTGTTAGT+AGG 0.403876 1_2:+15810903 Msa0059110:three_prime_UTR
TGCGTGCCACTTACCTTCCT+CGG 0.406995 1_2:-15810454 None:intergenic
CTGGTTTAGTAGCTGCTTCA+AGG 0.408785 1_2:+15810691 Msa0059110:three_prime_UTR
TACTAAGCCCGCTGATGTTA+AGG 0.409561 1_2:+15807087 Msa0059110:CDS
TTCAATATGGGAGATGAGTC+AGG 0.414927 1_2:+15810001 Msa0059110:CDS
AAATAGGGTGAAGGAAGAAA+AGG 0.424715 1_2:+15809485 Msa0059110:CDS
GGAGGCTGAAGGCGAAGAAA+AGG 0.425040 1_2:+15809452 Msa0059110:CDS
GAAAGTATTAACTGCATTCA+GGG 0.425236 1_2:+15810656 Msa0059110:exon
AATACTTTCTATATTTACTT+TGG 0.427894 1_2:-15810642 None:intergenic
CGGGCGCTGAGCTAGAATTA+AGG 0.430112 1_2:+15808659 Msa0059110:CDS
ATGCTTTCGCATCCGATTGA+AGG 0.433367 1_2:-15807047 None:intergenic
GAAAGAGAAGAGAGAGTGTA+GGG 0.438991 1_2:-15805245 None:intergenic
GAAGAAGTGGAGTCCTTCTT+CGG 0.441428 1_2:+15808145 Msa0059110:CDS
GATTTCAGGTCAACAGTGTT+CGG 0.445081 1_2:+15808530 Msa0059110:intron
AGAAGAGCCTAGAAAACAAT+GGG 0.446713 1_2:+15809523 Msa0059110:CDS
GCTACTCTAGATCCAGTTAC+CGG 0.447734 1_2:+15810118 Msa0059110:CDS
CTTGGCATATTGACCGAAGA+AGG 0.449259 1_2:-15808158 None:intergenic
GGAGGAGGAAGGTATGGTAG+AGG 0.458576 1_2:+15810574 Msa0059110:CDS
TGCATTCCAGGGAGCAAAGT+TGG 0.464023 1_2:+15808028 Msa0059110:intron
TACTGTGAAGCTTGAAGAAG+TGG 0.465343 1_2:+15808132 Msa0059110:CDS
AGAAAGAGAAGAGAGAGTGT+AGG 0.468237 1_2:-15805246 None:intergenic
GAAATTAGAGAGTGGCGGTA+TGG 0.479890 1_2:-15805272 None:intergenic
GGTGACTGAAGGTGCCGAAA+AGG 0.481831 1_2:+15809560 Msa0059110:CDS
TATCTTGTTTACCACGAAGC+TGG 0.484324 1_2:-15810409 None:intergenic
AGCTTCACAGTATATTCAAA+TGG 0.487645 1_2:-15808121 None:intergenic
CAGTACATAGATTTCAATAT+GGG 0.489907 1_2:+15809989 Msa0059110:intron
TTTGCTCAAGAAATCATCCC+TGG 0.490461 1_2:-15805481 None:intergenic
TGTGTTATCCTCCTCGTGGT+TGG 0.492162 1_2:-15809147 None:intergenic
GAGATGAGTCAGGCTTCATT+CGG 0.493240 1_2:+15810011 Msa0059110:CDS
TTCAGGGGAGGAGGAAGGTA+TGG 0.496516 1_2:+15810568 Msa0059110:intron
CTGCAGCCCTTTCGGAAAAG+GGG 0.498607 1_2:+15810071 Msa0059110:CDS
TTCCAGGGAGCAAAGTTGGC+AGG 0.499364 1_2:+15808032 Msa0059110:intron
TGTCTTACGTGAAGATTTGA+AGG 0.499878 1_2:+15809635 Msa0059110:CDS
AAATTAGAGAGTGGCGGTAT+GGG 0.505052 1_2:-15805271 None:intergenic
GCCAGAAGAGGTAATTGAGC+AGG 0.508078 1_2:+15808072 Msa0059110:CDS
ACTGTCAATGAAAGTGAAGA+TGG 0.510540 1_2:+15805504 Msa0059110:CDS
TGAAGGTGCCGAAAAGGGCC+AGG 0.512350 1_2:+15809566 Msa0059110:CDS
GAGTAGCTGAGAACAAAATC+AGG 0.512851 1_2:-15810718 None:intergenic
CCGAAAAGGGCCAGGAAACT+GGG 0.514402 1_2:+15809574 Msa0059110:CDS
TATTGTTACAGCTACCCTAA+AGG 0.518011 1_2:+15809255 Msa0059110:intron
GTTTCTTCCTTAACATCAGC+GGG 0.518351 1_2:-15807094 None:intergenic
GTGACTGAAGGTGCCGAAAA+GGG 0.521308 1_2:+15809561 Msa0059110:CDS
GTTCGGTTGCCCCGTCATGT+TGG 0.521804 1_2:+15808547 Msa0059110:CDS
TGCAGCCCTTTCGGAAAAGG+GGG 0.524299 1_2:+15810072 Msa0059110:CDS
TCCTCAGCAGCAACTTCAGA+GGG 0.526503 1_2:-15809363 None:intergenic
CAATACTGGAGCCAGCTTCG+TGG 0.527832 1_2:+15810398 Msa0059110:CDS
TCAGTGATAGTAATCTTCCC+AGG 0.528131 1_2:+15805463 Msa0059110:CDS
ACCCTCTGAAGTTGCTGCTG+AGG 0.528326 1_2:+15809362 Msa0059110:CDS
GGAGGAAGGTATGGTAGAGG+AGG 0.530321 1_2:+15810577 Msa0059110:CDS
AGCCTAGAAAACAATGGGGC+AGG 0.531567 1_2:+15809528 Msa0059110:CDS
TTCAGGGTTATTTACAACAC+TGG 0.539199 1_2:+15810672 Msa0059110:three_prime_UTR
TGGTTTAGTAGCTGCTTCAA+GGG 0.539915 1_2:+15810692 Msa0059110:three_prime_UTR
GAAAACAATGGGGCAGGTGA+AGG 0.540808 1_2:+15809534 Msa0059110:CDS
AACCAAGAAGGTTATACGAC+AGG 0.543197 1_2:+15805343 Msa0059110:CDS
TCACTCAAGCTATCAGAAGA+TGG 0.556963 1_2:+15807154 Msa0059110:CDS
GATGCGAAAGCATCTTAAGT+TGG 0.561750 1_2:+15807057 Msa0059110:CDS
CAATGGGGCAGGTGAAGGAA+AGG 0.574806 1_2:+15809539 Msa0059110:CDS
TTCCTCAGCAGCAACTTCAG+AGG 0.588125 1_2:-15809364 None:intergenic
CATCTGATGAGAACTCAACA+AGG 0.591422 1_2:-15808597 None:intergenic
CAATGGAGTGAACGAAGGAA+AGG 0.592633 1_2:+15809431 Msa0059110:CDS
TCAGAAGTTTGGTGATGTGA+AGG 0.592670 1_2:+15809665 Msa0059110:CDS
CAGTGATAGTAATCTTCCCA+GGG 0.596203 1_2:+15805464 Msa0059110:CDS
GCAGCCCTTTCGGAAAAGGG+GGG 0.596520 1_2:+15810073 Msa0059110:CDS
GAGAAGAGCCTAGAAAACAA+TGG 0.597234 1_2:+15809522 Msa0059110:CDS
TGACGAAGAAACAACCAAGA+AGG 0.607861 1_2:+15805331 Msa0059110:CDS
TTGCTCAAGAAATCATCCCT+GGG 0.608198 1_2:-15805480 None:intergenic
TGAACTTCCCAAGCCAGAAG+AGG 0.608914 1_2:+15808060 Msa0059110:CDS
AGAGACAATGATTCTGGACG+AGG 0.611973 1_2:+15810616 Msa0059110:CDS
GACAATGATAAAGAAAACAA+TGG 0.616572 1_2:+15809414 Msa0059110:CDS
GGTGAAGGAAAGGTGACTGA+AGG 0.628219 1_2:+15809549 Msa0059110:CDS
AGTTTCTTCCTTAACATCAG+CGG 0.630747 1_2:-15807095 None:intergenic
CTTCTTCGGTCAATATGCCA+AGG 0.638433 1_2:+15808159 Msa0059110:CDS
AGAAAACTGAAATTAGAGAG+TGG 0.639196 1_2:-15805280 None:intergenic
AACGAAGGAAAGGAGGCTGA+AGG 0.639810 1_2:+15809441 Msa0059110:CDS
TGGAGTGAACGAAGGAAAGG+AGG 0.640717 1_2:+15809434 Msa0059110:CDS
TATTTGTGTTATCCTCCTCG+TGG 0.654110 1_2:-15809151 None:intergenic
GAAAACAATGGAGTGAACGA+AGG 0.669742 1_2:+15809426 Msa0059110:CDS
ATCTGATGAGAACTCAACAA+GGG 0.670020 1_2:-15808596 None:intergenic
AAACTGAAATTAGAGAGTGG+CGG 0.703278 1_2:-15805277 None:intergenic
GAATGTGGGTTCCAACCACG+AGG 0.704964 1_2:+15809136 Msa0059110:CDS
TGTGGGTTCCAACCACGAGG+AGG 0.705081 1_2:+15809139 Msa0059110:CDS
GAAGAGCCTAGAAAACAATG+GGG 0.768621 1_2:+15809524 Msa0059110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAACAAAAATAGTT+TGG + chr1_2:15808438-15808457 Msa0059110:intron 10.0%
!!! AAATTGAAGTTTTTTATAAA+GGG - chr1_2:15808949-15808968 None:intergenic 10.0%
!!! TGTTATTTTTGAATTAATTT+TGG + chr1_2:15810829-15810848 Msa0059110:three_prime_UTR 10.0%
!!! GTTTATATTTTTAATGATGA+AGG + chr1_2:15807565-15807584 Msa0059110:intron 15.0%
!! TGTATATTCATTAAATTTCT+TGG + chr1_2:15808309-15808328 Msa0059110:intron 15.0%
!! TAATATATGTATTTGTCAAA+TGG - chr1_2:15808837-15808856 None:intergenic 15.0%
!! TATTAAAAAACTGTAATTGA+TGG + chr1_2:15808884-15808903 Msa0059110:intron 15.0%
!!! GAAATTGAAGTTTTTTATAA+AGG - chr1_2:15808950-15808969 None:intergenic 15.0%
!!! TCGTCTTTTTTTTATTTATT+TGG + chr1_2:15809784-15809803 Msa0059110:intron 15.0%
!!! AATTATATTAATACCTTTTC+AGG + chr1_2:15810551-15810570 Msa0059110:intron 15.0%
!!! ATTATATTAATACCTTTTCA+GGG + chr1_2:15810552-15810571 Msa0059110:intron 15.0%
!! AATACTTTCTATATTTACTT+TGG - chr1_2:15810645-15810664 None:intergenic 15.0%
!!! TTTTTAGTTAAGTTTCAATT+TGG + chr1_2:15810771-15810790 Msa0059110:three_prime_UTR 15.0%
!!! TCAATTTGGTTTATGTTTTT+AGG + chr1_2:15805562-15805581 Msa0059110:intron 20.0%
!!! CAATTTGGTTTATGTTTTTA+GGG + chr1_2:15805563-15805582 Msa0059110:intron 20.0%
!!! CTTCAATTTTCTTAAATGAT+CGG - chr1_2:15805667-15805686 None:intergenic 20.0%
!! ATTTAAGAAAATTGAAGTAC+CGG + chr1_2:15805670-15805689 Msa0059110:intron 20.0%
!!! GAAGAAAATAAACTGATTTT+AGG - chr1_2:15806278-15806297 None:intergenic 20.0%
!! GTTAATACCAATAAAAAGTA+GGG + chr1_2:15806341-15806360 Msa0059110:intron 20.0%
!!! ATATTTTCTCAAATTACTGT+TGG + chr1_2:15806702-15806721 Msa0059110:intron 20.0%
!! TACAACAATTATACACAAAA+TGG - chr1_2:15807210-15807229 None:intergenic 20.0%
!!! TAATTTAAAGTTAGTGATAG+TGG + chr1_2:15807452-15807471 Msa0059110:intron 20.0%
!! AACAGCATAATCTAAATTAA+TGG - chr1_2:15807644-15807663 None:intergenic 20.0%
!!! ATTAATTTAGAGTTAATCGA+AGG - chr1_2:15807733-15807752 None:intergenic 20.0%
!! TAGATATAAATTTCATGTAG+TGG - chr1_2:15807759-15807778 None:intergenic 20.0%
!! AATGAAATTTATATCTATCG+TGG - chr1_2:15807798-15807817 None:intergenic 20.0%
!!! TTAGTGAATCATTAATTTTC+TGG + chr1_2:15807817-15807836 Msa0059110:intron 20.0%
!! GAAATAAGTAATAAGTTATG+TGG - chr1_2:15807994-15808013 None:intergenic 20.0%
!! AAAAATATATATTAATGCCG+TGG + chr1_2:15808213-15808232 Msa0059110:intron 20.0%
!!! AGATTTCTTTAAGATAAATC+TGG + chr1_2:15808371-15808390 Msa0059110:intron 20.0%
!!! ACATTTTTGTTTTTGATTTC+AGG + chr1_2:15808516-15808535 Msa0059110:intron 20.0%
!!! ATTACTTTGCTTTCATTTTA+TGG - chr1_2:15809223-15809242 None:intergenic 20.0%
!! ATAGATAAATATCAAACCAA+AGG - chr1_2:15809733-15809752 None:intergenic 20.0%
!!! ATCTAATTTTTCAATCAGTT+GGG + chr1_2:15810157-15810176 Msa0059110:intron 20.0%
!! AAAAATAGAGAAAATCATCA+AGG - chr1_2:15810492-15810511 None:intergenic 20.0%
!!! TGATGATTTTCTCTATTTTT+TGG + chr1_2:15810492-15810511 Msa0059110:intron 20.0%
!!! GATGATTTTCTCTATTTTTT+GGG + chr1_2:15810493-15810512 Msa0059110:intron 20.0%
!!! TTATATTAATACCTTTTCAG+GGG + chr1_2:15810553-15810572 Msa0059110:intron 20.0%
!! TTTATAAGCAAATGTTAGTT+TGG + chr1_2:15810885-15810904 Msa0059110:three_prime_UTR 20.0%
! GAATAATTAAGCAAAAACGA+CGG - chr1_2:15805376-15805395 None:intergenic 25.0%
! CCAAATTGATAAACAAAAGA+GGG - chr1_2:15805551-15805570 None:intergenic 25.0%
! ACCAAATTGATAAACAAAAG+AGG - chr1_2:15805552-15805571 None:intergenic 25.0%
!!! GGTTTTGTTAATGTAATTGA+AGG + chr1_2:15805584-15805603 Msa0059110:intron 25.0%
!!! GTTACATTTGTTGTTGTTTT+TGG + chr1_2:15806001-15806020 Msa0059110:intron 25.0%
!!! ATTTGTTGTTGTTTTTGGAA+TGG + chr1_2:15806006-15806025 Msa0059110:intron 25.0%
!!! TTTGTTGTTGTTTTTGGAAT+GGG + chr1_2:15806007-15806026 Msa0059110:intron 25.0%
!!! CCATTCAATTCAATTTTAGT+GGG + chr1_2:15806066-15806085 Msa0059110:intron 25.0%
! GAGACTTATTAATTAAATGG+TGG - chr1_2:15806146-15806165 None:intergenic 25.0%
! CGTTAATACCAATAAAAAGT+AGG + chr1_2:15806340-15806359 Msa0059110:intron 25.0%
!! ATTTTCCCTAGTTTACATTT+TGG - chr1_2:15806917-15806936 None:intergenic 25.0%
! TTGATCAAATGAGAAGAAAT+TGG - chr1_2:15806947-15806966 None:intergenic 25.0%
! TTATACACAAAATGGATGAA+TGG - chr1_2:15807202-15807221 None:intergenic 25.0%
! GTGATAAATTCATTCTAATC+AGG + chr1_2:15807239-15807258 Msa0059110:intron 25.0%
! CAATCTATCCTATTCTTAAT+TGG - chr1_2:15807422-15807441 None:intergenic 25.0%
! AACTCTAAATTAACGATAGA+TGG + chr1_2:15807618-15807637 Msa0059110:intron 25.0%
! ATTTAGATTATGCTGTTGTA+TGG + chr1_2:15807647-15807666 Msa0059110:intron 25.0%
! ATTTATGTTGTTCTGTTGTA+TGG + chr1_2:15807679-15807698 Msa0059110:intron 25.0%
!! TCACTTGAAATTTTGTTCAT+TGG + chr1_2:15807892-15807911 Msa0059110:intron 25.0%
!! CACTTGAAATTTTGTTCATT+GGG + chr1_2:15807893-15807912 Msa0059110:intron 25.0%
! CATTGATGTTAATATTACCT+TGG - chr1_2:15808179-15808198 None:intergenic 25.0%
! CATTCTAACAGTATTATAGT+CGG + chr1_2:15808240-15808259 Msa0059110:intron 25.0%
!! ATACATAAAGCATCATTACT+CGG - chr1_2:15808294-15808313 None:intergenic 25.0%
! AAACCTTCAAATATTAACCA+CGG - chr1_2:15808407-15808426 None:intergenic 25.0%
!!! TGGATTTTGACAGAAAATAT+TGG - chr1_2:15808817-15808836 None:intergenic 25.0%
! TGTATATATTTACTCAATGC+AGG + chr1_2:15809057-15809076 Msa0059110:intron 25.0%
!! TTGCTTTCATTTTATGGTTA+GGG - chr1_2:15809217-15809236 None:intergenic 25.0%
!! TTTGCTTTCATTTTATGGTT+AGG - chr1_2:15809218-15809237 None:intergenic 25.0%
! GACAATGATAAAGAAAACAA+TGG + chr1_2:15809414-15809433 Msa0059110:CDS 25.0%
! CAGGTTATTAAAACAAAAGA+AGG - chr1_2:15809840-15809859 None:intergenic 25.0%
! ACAGTACATAGATTTCAATA+TGG + chr1_2:15809988-15810007 Msa0059110:intron 25.0%
! CAGTACATAGATTTCAATAT+GGG + chr1_2:15809989-15810008 Msa0059110:intron 25.0%
! GATGTAAAAGTAAAACTAAC+CGG - chr1_2:15810140-15810159 None:intergenic 25.0%
!!! CATCTAATTTTTCAATCAGT+TGG + chr1_2:15810156-15810175 Msa0059110:intron 25.0%
!!! CTAGTGACAATGATTTTTTA+TGG + chr1_2:15810218-15810237 Msa0059110:intron 25.0%
!! TTTGGTAGTATATTGTTAGT+AGG + chr1_2:15810903-15810922 Msa0059110:three_prime_UTR 25.0%
!! AAAGAGATTTAGGTTGTGTT+TGG - chr1_2:15805219-15805238 None:intergenic 30.0%
AGAAAACTGAAATTAGAGAG+TGG - chr1_2:15805283-15805302 None:intergenic 30.0%
! AGTTTTCTCATTCTCATCAA+TGG + chr1_2:15805295-15805314 Msa0059110:exon 30.0%
!! TTTTGTTTGTTTGAAACTGC+AGG + chr1_2:15805428-15805447 Msa0059110:intron 30.0%
ATAAACAAAAGAGGGCAAAA+TGG - chr1_2:15805543-15805562 None:intergenic 30.0%
!! CCCTCTTTTGTTTATCAATT+TGG + chr1_2:15805548-15805567 Msa0059110:intron 30.0%
! ATCACTATCGTGTTTTATGT+TGG - chr1_2:15805629-15805648 None:intergenic 30.0%
TAGGTACATGTATACGTATA+CGG - chr1_2:15805957-15805976 None:intergenic 30.0%
! GCCATTCAATTCAATTTTAG+TGG + chr1_2:15806065-15806084 Msa0059110:intron 30.0%
CCCACTAAAATTGAATTGAA+TGG - chr1_2:15806069-15806088 None:intergenic 30.0%
!!! ATTTTAGTGGGTTAGTTCTA+TGG + chr1_2:15806078-15806097 Msa0059110:intron 30.0%
GGCGAGACTTATTAATTAAA+TGG - chr1_2:15806149-15806168 None:intergenic 30.0%
TAATTAATAAGTCTCGCCAT+TGG + chr1_2:15806151-15806170 Msa0059110:intron 30.0%
! GAGACTTTTTGATCTAATAG+TGG + chr1_2:15806191-15806210 Msa0059110:intron 30.0%
! ATAGTGGAAAAAAACTTGTC+TGG + chr1_2:15806207-15806226 Msa0059110:intron 30.0%
CACTAAAATGGCTAATTCTT+CGG - chr1_2:15806254-15806273 None:intergenic 30.0%
!!! CTGATTTTAGGACACTAAAA+TGG - chr1_2:15806266-15806285 None:intergenic 30.0%
!!! AGGTTTACCCTACTTTTTAT+TGG - chr1_2:15806351-15806370 None:intergenic 30.0%
TTGAGTGCAAATACAAGTTT+CGG - chr1_2:15806677-15806696 None:intergenic 30.0%
! TCCTAAAGACTATAGTTTGT+TGG + chr1_2:15806837-15806856 Msa0059110:intron 30.0%
!! CCTAAAGACTATAGTTTGTT+GGG + chr1_2:15806838-15806857 Msa0059110:intron 30.0%
ATCCTACCAAAATGTAAACT+AGG + chr1_2:15806908-15806927 Msa0059110:intron 30.0%
TCCTACCAAAATGTAAACTA+GGG + chr1_2:15806909-15806928 Msa0059110:intron 30.0%
!!! ATTTTTTTCTCTCACTTTGC+TGG + chr1_2:15807396-15807415 Msa0059110:intron 30.0%
AACAGAACAACATAAATCGA+AGG - chr1_2:15807676-15807695 None:intergenic 30.0%
! TGAAACTTTCTAAGAGTAGA+TGG + chr1_2:15807849-15807868 Msa0059110:intron 30.0%
AGCTTCACAGTATATTCAAA+TGG - chr1_2:15808124-15808143 None:intergenic 30.0%
TACTGTTAGAATGTAAACCA+CGG - chr1_2:15808233-15808252 None:intergenic 30.0%
AACCTTCAAATATTAACCAC+GGG - chr1_2:15808406-15808425 None:intergenic 30.0%
! AAATAGTTTGGAGTATAGTC+TGG + chr1_2:15808450-15808469 Msa0059110:intron 30.0%
GAAGCAAAAATTAGTGTATG+CGG + chr1_2:15808639-15808658 Msa0059110:CDS 30.0%
AAGCAAAAATTAGTGTATGC+GGG + chr1_2:15808640-15808659 Msa0059110:CDS 30.0%
ATCTATGAACATGCTTACTT+TGG - chr1_2:15808685-15808704 None:intergenic 30.0%
!! TGACTGTTGATGAATTTTAG+TGG + chr1_2:15808720-15808739 Msa0059110:intron 30.0%
ATTTACTAACTTCTACCTGT+GGG + chr1_2:15808973-15808992 Msa0059110:intron 30.0%
TGAAAAATCTCGTAAGAATG+TGG + chr1_2:15809121-15809140 Msa0059110:CDS 30.0%
GAAAAATCTCGTAAGAATGT+GGG + chr1_2:15809122-15809141 Msa0059110:CDS 30.0%
! TGCTTTCATTTTATGGTTAG+GGG - chr1_2:15809216-15809235 None:intergenic 30.0%
AAAAGGAGCAAGAGAAAAAT+AGG + chr1_2:15809469-15809488 Msa0059110:CDS 30.0%
AAAGGAGCAAGAGAAAAATA+GGG + chr1_2:15809470-15809489 Msa0059110:CDS 30.0%
TGAGTTAAAGATCTAAACCA+CGG - chr1_2:15809864-15809883 None:intergenic 30.0%
TACCAATCAAGAATAAGTCT+CGG - chr1_2:15810355-15810374 None:intergenic 30.0%
TTCTTGATTGGTATGTAATC+AGG + chr1_2:15810362-15810381 Msa0059110:intron 30.0%
!! AGAAAGTATTAACTGCATTC+AGG + chr1_2:15810655-15810674 Msa0059110:exon 30.0%
!! GAAAGTATTAACTGCATTCA+GGG + chr1_2:15810656-15810675 Msa0059110:exon 30.0%
!!! AGGGTTTTGGAAAGAGATTT+AGG - chr1_2:15805229-15805248 None:intergenic 35.0%
AAACTGAAATTAGAGAGTGG+CGG - chr1_2:15805280-15805299 None:intergenic 35.0%
ACTGTCAATGAAAGTGAAGA+TGG + chr1_2:15805504-15805523 Msa0059110:CDS 35.0%
AAAGAGGGCAAAATGGTAAA+AGG - chr1_2:15805536-15805555 None:intergenic 35.0%
!! TAAGAAAATTGAAGTACCGG+CGG + chr1_2:15805673-15805692 Msa0059110:intron 35.0%
CCAGTAAAATTGTGAAGTAC+CGG + chr1_2:15805698-15805717 Msa0059110:intron 35.0%
TCACTCAAAACGAGAAAAAG+TGG - chr1_2:15805757-15805776 None:intergenic 35.0%
TACATGTACCTATGCAACAT+AGG + chr1_2:15805965-15805984 Msa0059110:intron 35.0%
TCACATACATATGAGAGTGA+AGG - chr1_2:15806037-15806056 None:intergenic 35.0%
TCATATCTCACTTGAACCAA+TGG - chr1_2:15806170-15806189 None:intergenic 35.0%
AAAGTAGGGTAAACCTTAGT+CGG + chr1_2:15806355-15806374 Msa0059110:intron 35.0%
AGATTACTCTTTAGGTGAGT+TGG + chr1_2:15806492-15806511 Msa0059110:intron 35.0%
GATTACTCTTTAGGTGAGTT+GGG + chr1_2:15806493-15806512 Msa0059110:intron 35.0%
! AAGTTTAGGACTCTGTTAGT+GGG - chr1_2:15806590-15806609 None:intergenic 35.0%
! AAAGTTTAGGACTCTGTTAG+TGG - chr1_2:15806591-15806610 None:intergenic 35.0%
! CTATAGTCTTTAGGAGAAGT+TGG - chr1_2:15806832-15806851 None:intergenic 35.0%
CCCAACAAACTATAGTCTTT+AGG - chr1_2:15806841-15806860 None:intergenic 35.0%
!! TCCCTAGTTTACATTTTGGT+AGG - chr1_2:15806913-15806932 None:intergenic 35.0%
CTGAAATTCTAACTACACAG+TGG + chr1_2:15807003-15807022 Msa0059110:intron 35.0%
! TAACTACACAGTGGTTAGTT+TGG + chr1_2:15807012-15807031 Msa0059110:intron 35.0%
! CTTTGCTTTGTTCCTTCAAT+CGG + chr1_2:15807035-15807054 Msa0059110:CDS 35.0%
AGTTTCTTCCTTAACATCAG+CGG - chr1_2:15807098-15807117 None:intergenic 35.0%
TTTGCTGGCCAATTAAGAAT+AGG + chr1_2:15807411-15807430 Msa0059110:intron 35.0%
! AATAGGATAGATTGCTGTTC+TGG + chr1_2:15807428-15807447 Msa0059110:intron 35.0%
CTAGAGCTTTGCAAAGAAAT+TGG - chr1_2:15807510-15807529 None:intergenic 35.0%
GAAACAAAATGTCACGTATG+TGG - chr1_2:15807959-15807978 None:intergenic 35.0%
CTCATGTTTACCAGAATCAT+AGG - chr1_2:15808353-15808372 None:intergenic 35.0%
ATCCCGTGGTTAATATTTGA+AGG + chr1_2:15808401-15808420 Msa0059110:intron 35.0%
! ACTTTTTGTCTCCAACATGA+CGG - chr1_2:15808561-15808580 None:intergenic 35.0%
ATCTGATGAGAACTCAACAA+GGG - chr1_2:15808599-15808618 None:intergenic 35.0%
!!! GTTTTTTATAAAGGGATGCC+AGG - chr1_2:15808941-15808960 None:intergenic 35.0%
CATTTACTAACTTCTACCTG+TGG + chr1_2:15808972-15808991 Msa0059110:intron 35.0%
TTTACTAACTTCTACCTGTG+GGG + chr1_2:15808974-15808993 Msa0059110:intron 35.0%
TATATTTACTCAATGCAGGC+AGG + chr1_2:15809061-15809080 Msa0059110:intron 35.0%
TATTGTTACAGCTACCCTAA+AGG + chr1_2:15809255-15809274 Msa0059110:intron 35.0%
AGGCTATAACTAAGCCTTTA+GGG - chr1_2:15809272-15809291 None:intergenic 35.0%
AAGGCTATAACTAAGCCTTT+AGG - chr1_2:15809273-15809292 None:intergenic 35.0%
!! TGAACTGCTCTTTAGTTTGA+AGG - chr1_2:15809292-15809311 None:intergenic 35.0%
! GTCACGTCATTATTCTTTTC+TGG - chr1_2:15809324-15809343 None:intergenic 35.0%
AAATAGGGTGAAGGAAGAAA+AGG + chr1_2:15809485-15809504 Msa0059110:CDS 35.0%
AGAAGAGCCTAGAAAACAAT+GGG + chr1_2:15809523-15809542 Msa0059110:CDS 35.0%
TGTCTTACGTGAAGATTTGA+AGG + chr1_2:15809635-15809654 Msa0059110:CDS 35.0%
AAGGTTGTGTTTCAGAAGTT+TGG + chr1_2:15809654-15809673 Msa0059110:CDS 35.0%
! TGGTGATGTGAAGGTAAATA+TGG + chr1_2:15809674-15809693 Msa0059110:intron 35.0%
!!! TTGTTTTAATAACCTGACCG+TGG + chr1_2:15809844-15809863 Msa0059110:intron 35.0%
AAGTAAAACTAACCGGTAAC+TGG - chr1_2:15810133-15810152 None:intergenic 35.0%
ACCAATCAAGAATAAGTCTC+GGG - chr1_2:15810354-15810373 None:intergenic 35.0%
GTGAAGCTGAAAAACAATAC+TGG + chr1_2:15810384-15810403 Msa0059110:CDS 35.0%
!!! TCTCTATTTTTTGGGATCAC+CGG + chr1_2:15810501-15810520 Msa0059110:intron 35.0%
!! TATTAATACCTTTTCAGGGG+AGG + chr1_2:15810556-15810575 Msa0059110:intron 35.0%
CGTAATAGAGACAATGATTC+TGG + chr1_2:15810610-15810629 Msa0059110:CDS 35.0%
TTCAGGGTTATTTACAACAC+TGG + chr1_2:15810672-15810691 Msa0059110:three_prime_UTR 35.0%
! GAAAGAGAAGAGAGAGTGTA+GGG - chr1_2:15805248-15805267 None:intergenic 40.0%
! AGAAAGAGAAGAGAGAGTGT+AGG - chr1_2:15805249-15805268 None:intergenic 40.0%
AAATTAGAGAGTGGCGGTAT+GGG - chr1_2:15805274-15805293 None:intergenic 40.0%
TGACGAAGAAACAACCAAGA+AGG + chr1_2:15805331-15805350 Msa0059110:CDS 40.0%
AACCAAGAAGGTTATACGAC+AGG + chr1_2:15805343-15805362 Msa0059110:CDS 40.0%
AACCTGTCGTATAACCTTCT+TGG - chr1_2:15805348-15805367 None:intergenic 40.0%
TCAGTGATAGTAATCTTCCC+AGG + chr1_2:15805463-15805482 Msa0059110:CDS 40.0%
CAGTGATAGTAATCTTCCCA+GGG + chr1_2:15805464-15805483 Msa0059110:CDS 40.0%
TTGCTCAAGAAATCATCCCT+GGG - chr1_2:15805483-15805502 None:intergenic 40.0%
TTTGCTCAAGAAATCATCCC+TGG - chr1_2:15805484-15805503 None:intergenic 40.0%
! CCGGTACTTCACAATTTTAC+TGG - chr1_2:15805701-15805720 None:intergenic 40.0%
!! GTAAAATTGTGAAGTACCGG+CGG + chr1_2:15805701-15805720 Msa0059110:intron 40.0%
GTCTGGTACAACACTATTAG+TGG + chr1_2:15806224-15806243 Msa0059110:intron 40.0%
!! GGTGTGACTCGATTTTTAAG+CGG + chr1_2:15806376-15806395 Msa0059110:intron 40.0%
AATCCCCACAACACATCTTT+GGG + chr1_2:15806427-15806446 Msa0059110:intron 40.0%
TTTCAACCTAAGCACCTTAG+CGG + chr1_2:15806469-15806488 Msa0059110:intron 40.0%
CTAAAGAGTAATCTCCGCTA+AGG - chr1_2:15806486-15806505 None:intergenic 40.0%
CTTAGCGGAGATTACTCTTT+AGG + chr1_2:15806484-15806503 Msa0059110:intron 40.0%
! TCTGTTAGTGGGTAATCTGT+TGG - chr1_2:15806579-15806598 None:intergenic 40.0%
!! GTTTCGGTGCTACAAAGTTT+AGG - chr1_2:15806604-15806623 None:intergenic 40.0%
GCTTTCGATCAGACAAGTTT+CGG - chr1_2:15806620-15806639 None:intergenic 40.0%
AGTTGAACATATGCCCTTGT+GGG + chr1_2:15806799-15806818 Msa0059110:intron 40.0%
GTAGGATATCTCTGTAAGTG+GGG - chr1_2:15806895-15806914 None:intergenic 40.0%
GGTAGGATATCTCTGTAAGT+GGG - chr1_2:15806896-15806915 None:intergenic 40.0%
TGGTAGGATATCTCTGTAAG+TGG - chr1_2:15806897-15806916 None:intergenic 40.0%
!! GATGCGAAAGCATCTTAAGT+TGG + chr1_2:15807057-15807076 Msa0059110:CDS 40.0%
GTTTCTTCCTTAACATCAGC+GGG - chr1_2:15807097-15807116 None:intergenic 40.0%
TCACTCAAGCTATCAGAAGA+TGG + chr1_2:15807154-15807173 Msa0059110:CDS 40.0%
TCTAATCAGGCAACTGCAAT+AGG + chr1_2:15807252-15807271 Msa0059110:intron 40.0%
GTCGACTACAACAGTATAGA+AGG - chr1_2:15807488-15807507 None:intergenic 40.0%
TCATTCTATTCGTGCATTCC+AGG + chr1_2:15808016-15808035 Msa0059110:intron 40.0%
CATTCTATTCGTGCATTCCA+GGG + chr1_2:15808017-15808036 Msa0059110:intron 40.0%
!! TCAATTACCTCTTCTGGCTT+GGG - chr1_2:15808070-15808089 None:intergenic 40.0%
TACTGTGAAGCTTGAAGAAG+TGG + chr1_2:15808132-15808151 Msa0059110:CDS 40.0%
! CATAAAGCATCATTACTCGG+AGG - chr1_2:15808291-15808310 None:intergenic 40.0%
CTTGGTGAAAAGTTGAAGCA+TGG + chr1_2:15808327-15808346 Msa0059110:intron 40.0%
AATCTGGTATTTGAATCCCG+TGG + chr1_2:15808387-15808406 Msa0059110:intron 40.0%
! GATTTCAGGTCAACAGTGTT+CGG + chr1_2:15808530-15808549 Msa0059110:intron 40.0%
! TTTTTGTCTCCAACATGACG+GGG - chr1_2:15808559-15808578 None:intergenic 40.0%
! CTTTTTGTCTCCAACATGAC+GGG - chr1_2:15808560-15808579 None:intergenic 40.0%
GGAGACAAAAAGTTCTTCTG+TGG + chr1_2:15808568-15808587 Msa0059110:CDS 40.0%
CATCTGATGAGAACTCAACA+AGG - chr1_2:15808600-15808619 None:intergenic 40.0%
GTGAGTGATTATGATTCTCC+TGG + chr1_2:15808920-15808939 Msa0059110:intron 40.0%
TATTTGTGTTATCCTCCTCG+TGG - chr1_2:15809154-15809173 None:intergenic 40.0%
! GGGTTTTTGCTCATCTGTTT+TGG - chr1_2:15809346-15809365 None:intergenic 40.0%
GAAAACAATGGAGTGAACGA+AGG + chr1_2:15809426-15809445 Msa0059110:CDS 40.0%
GCAAGAGAAAAATAGGGTGA+AGG + chr1_2:15809476-15809495 Msa0059110:CDS 40.0%
GAGAAGAGCCTAGAAAACAA+TGG + chr1_2:15809522-15809541 Msa0059110:CDS 40.0%
GAAGAGCCTAGAAAACAATG+GGG + chr1_2:15809524-15809543 Msa0059110:CDS 40.0%
!!! CTGTTTTTTTCCCAGTTTCC+TGG - chr1_2:15809587-15809606 None:intergenic 40.0%
!! TCAGAAGTTTGGTGATGTGA+AGG + chr1_2:15809665-15809684 Msa0059110:CDS 40.0%
TAAAGATCTAAACCACGGTC+AGG - chr1_2:15809859-15809878 None:intergenic 40.0%
TTCAATATGGGAGATGAGTC+AGG + chr1_2:15810001-15810020 Msa0059110:CDS 40.0%
! GTCTGTTTGGTTCAAACAAG+AGG - chr1_2:15810331-15810350 None:intergenic 40.0%
CCAATCAAGAATAAGTCTCG+GGG - chr1_2:15810353-15810372 None:intergenic 40.0%
! TATCTTGTTTACCACGAAGC+TGG - chr1_2:15810412-15810431 None:intergenic 40.0%
!! AGAGAAAGTTTTAGCAACCG+AGG + chr1_2:15810437-15810456 Msa0059110:CDS 40.0%
!! AAAGTTTTAGCAACCGAGGA+AGG + chr1_2:15810441-15810460 Msa0059110:CDS 40.0%
!!! CTCTATTTTTTGGGATCACC+GGG + chr1_2:15810502-15810521 Msa0059110:intron 40.0%
!!! TCTATTTTTTGGGATCACCG+GGG + chr1_2:15810503-15810522 Msa0059110:intron 40.0%
TGGTTTAGTAGCTGCTTCAA+GGG + chr1_2:15810692-15810711 Msa0059110:three_prime_UTR 40.0%
GAGTAGCTGAGAACAAAATC+AGG - chr1_2:15810721-15810740 None:intergenic 40.0%
! TCAGCTACTCACAGATTTTG+TGG + chr1_2:15810731-15810750 Msa0059110:three_prime_UTR 40.0%
! CTACTCACAGATTTTGTGGT+TGG + chr1_2:15810735-15810754 Msa0059110:three_prime_UTR 40.0%
!! GAAGAGAGAGTGTAGGGTTT+TGG - chr1_2:15805242-15805261 None:intergenic 45.0%
GAAATTAGAGAGTGGCGGTA+TGG - chr1_2:15805275-15805294 None:intergenic 45.0%
! CACAATTTTACTGGTACCGC+CGG - chr1_2:15805692-15805711 None:intergenic 45.0%
ATCTTCCGTACCTGTTGCAT+AGG + chr1_2:15805929-15805948 Msa0059110:intron 45.0%
GTATACGGTACCTATGCAAC+AGG - chr1_2:15805942-15805961 None:intergenic 45.0%
GACATCGACCTATGTTGCAT+AGG - chr1_2:15805976-15805995 None:intergenic 45.0%
ATGCAACATAGGTCGATGTC+TGG + chr1_2:15805976-15805995 Msa0059110:intron 45.0%
CTATGGTGCACAAGTGAGAT+AGG + chr1_2:15806095-15806114 Msa0059110:intron 45.0%
! AAATCGAGTCACACCGACTA+AGG - chr1_2:15806371-15806390 None:intergenic 45.0%
!! TTTTTAAGCGGCTGACCTTG+TGG + chr1_2:15806388-15806407 Msa0059110:intron 45.0%
! TTTTAAGCGGCTGACCTTGT+GGG + chr1_2:15806389-15806408 Msa0059110:intron 45.0%
CAATCCCCACAACACATCTT+TGG + chr1_2:15806426-15806445 Msa0059110:intron 45.0%
ATCCCCACAACACATCTTTG+GGG + chr1_2:15806428-15806447 Msa0059110:intron 45.0%
! TAATCTCCGCTAAGGTGCTT+AGG - chr1_2:15806478-15806497 None:intergenic 45.0%
TGTCAGACACAGACATGTGT+TGG - chr1_2:15806654-15806673 None:intergenic 45.0%
TGATGTGTCAGAATCGTGTC+TGG + chr1_2:15806728-15806747 Msa0059110:intron 45.0%
TCTGGTGTTCGTGTTAGTGT+CGG + chr1_2:15806746-15806765 Msa0059110:intron 45.0%
CAACTCCTGTTGTCAACGTT+GGG - chr1_2:15806784-15806803 None:intergenic 45.0%
TCAACTCCTGTTGTCAACGT+TGG - chr1_2:15806785-15806804 None:intergenic 45.0%
GAGTTGAACATATGCCCTTG+TGG + chr1_2:15806798-15806817 Msa0059110:intron 45.0%
GTTGAACATATGCCCTTGTG+GGG + chr1_2:15806800-15806819 Msa0059110:intron 45.0%
!! TAGTTTGTTGGGATGCTCTG+TGG + chr1_2:15806849-15806868 Msa0059110:intron 45.0%
!! AGTTTGTTGGGATGCTCTGT+GGG + chr1_2:15806850-15806869 Msa0059110:intron 45.0%
ATGCTTTCGCATCCGATTGA+AGG - chr1_2:15807050-15807069 None:intergenic 45.0%
TACTAAGCCCGCTGATGTTA+AGG + chr1_2:15807087-15807106 Msa0059110:CDS 45.0%
! CTCAATTACCTCTTCTGGCT+TGG - chr1_2:15808071-15808090 None:intergenic 45.0%
ACCTGCTCAATTACCTCTTC+TGG - chr1_2:15808076-15808095 None:intergenic 45.0%
GAAGAAGTGGAGTCCTTCTT+CGG + chr1_2:15808145-15808164 Msa0059110:CDS 45.0%
CTTGGCATATTGACCGAAGA+AGG - chr1_2:15808161-15808180 None:intergenic 45.0%
CTTCTTCGGTCAATATGCCA+AGG + chr1_2:15808159-15808178 Msa0059110:CDS 45.0%
TGAAGCATGGCCTATGATTC+TGG + chr1_2:15808340-15808359 Msa0059110:intron 45.0%
CAATGGAGTGAACGAAGGAA+AGG + chr1_2:15809431-15809450 Msa0059110:CDS 45.0%
CTGTTGGGACTTTCTTCCTT+TGG + chr1_2:15809714-15809733 Msa0059110:intron 45.0%
GAGATGAGTCAGGCTTCATT+CGG + chr1_2:15810011-15810030 Msa0059110:CDS 45.0%
GCTACTCTAGATCCAGTTAC+CGG + chr1_2:15810118-15810137 Msa0059110:CDS 45.0%
AATAAGTCTCGGGGTCTGTT+TGG - chr1_2:15810344-15810363 None:intergenic 45.0%
CCCCGAGACTTATTCTTGAT+TGG + chr1_2:15810350-15810369 Msa0059110:intron 45.0%
!!! CTATTTTTTGGGATCACCGG+GGG + chr1_2:15810504-15810523 Msa0059110:intron 45.0%
! AGTTTGAGTTTCACTACCCC+CGG - chr1_2:15810523-15810542 None:intergenic 45.0%
!! TAATACCTTTTCAGGGGAGG+AGG + chr1_2:15810559-15810578 Msa0059110:intron 45.0%
AGAGACAATGATTCTGGACG+AGG + chr1_2:15810616-15810635 Msa0059110:CDS 45.0%
CTGGTTTAGTAGCTGCTTCA+AGG + chr1_2:15810691-15810710 Msa0059110:three_prime_UTR 45.0%
!!! TTTTTAAAAAATTAAAGTTT+GGG - chr1_2:15805902-15805921 None:intergenic 5.0%
!!! ATTTTTAAAAAATTAAAGTT+TGG - chr1_2:15805903-15805922 None:intergenic 5.0%
!!! ATATATATTTTTTTTTTTGA+AGG - chr1_2:15808205-15808224 None:intergenic 5.0%
!! ATATTATTATAATTTCTTAT+AGG + chr1_2:15808769-15808788 Msa0059110:intron 5.0%
CGGTACCTATGCAACAGGTA+CGG - chr1_2:15805937-15805956 None:intergenic 50.0%
TTTAAGCGGCTGACCTTGTG+GGG + chr1_2:15806390-15806409 Msa0059110:intron 50.0%
CTCCCCAAAGATGTGTTGTG+GGG - chr1_2:15806433-15806452 None:intergenic 50.0%
CCTCCCCAAAGATGTGTTGT+GGG - chr1_2:15806434-15806453 None:intergenic 50.0%
! CCACAACACATCTTTGGGGA+GGG + chr1_2:15806432-15806451 Msa0059110:intron 50.0%
! CACAACACATCTTTGGGGAG+GGG + chr1_2:15806433-15806452 Msa0059110:intron 50.0%
! TTTAGGTGAGTTGGGTCCCT+TGG + chr1_2:15806501-15806520 Msa0059110:intron 50.0%
! TTAGGTGAGTTGGGTCCCTT+GGG + chr1_2:15806502-15806521 Msa0059110:intron 50.0%
! TGTCTGATCGAAAGCGTGTC+CGG + chr1_2:15806625-15806644 Msa0059110:intron 50.0%
!! TGTTAGTGTCGGTGCTTCAC+AGG + chr1_2:15806757-15806776 Msa0059110:intron 50.0%
! AGTTGGCTCATACCCCACAA+GGG - chr1_2:15806815-15806834 None:intergenic 50.0%
! AAGTTGGCTCATACCCCACA+AGG - chr1_2:15806816-15806835 None:intergenic 50.0%
! GTTTGTTGGGATGCTCTGTG+GGG + chr1_2:15806851-15806870 Msa0059110:intron 50.0%
ATCTCTGTAAGTGGGGCCTT+TGG - chr1_2:15806888-15806907 None:intergenic 50.0%
TGCATTCCAGGGAGCAAAGT+TGG + chr1_2:15808028-15808047 Msa0059110:intron 50.0%
TGAACTTCCCAAGCCAGAAG+AGG + chr1_2:15808060-15808079 Msa0059110:CDS 50.0%
GCCAGAAGAGGTAATTGAGC+AGG + chr1_2:15808072-15808091 Msa0059110:CDS 50.0%
GCATCATTACTCGGAGGCTA+AGG - chr1_2:15808285-15808304 None:intergenic 50.0%
TGTGTTATCCTCCTCGTGGT+TGG - chr1_2:15809150-15809169 None:intergenic 50.0%
TCCTCAGCAGCAACTTCAGA+GGG - chr1_2:15809366-15809385 None:intergenic 50.0%
TTCCTCAGCAGCAACTTCAG+AGG - chr1_2:15809367-15809386 None:intergenic 50.0%
TGGAGTGAACGAAGGAAAGG+AGG + chr1_2:15809434-15809453 Msa0059110:CDS 50.0%
AACGAAGGAAAGGAGGCTGA+AGG + chr1_2:15809441-15809460 Msa0059110:CDS 50.0%
AGCCTAGAAAACAATGGGGC+AGG + chr1_2:15809528-15809547 Msa0059110:CDS 50.0%
! CACCTGCCCCATTGTTTTCT+AGG - chr1_2:15809533-15809552 None:intergenic 50.0%
GAAAACAATGGGGCAGGTGA+AGG + chr1_2:15809534-15809553 Msa0059110:CDS 50.0%
GGTGAAGGAAAGGTGACTGA+AGG + chr1_2:15809549-15809568 Msa0059110:CDS 50.0%
!! GTGACTGAAGGTGCCGAAAA+GGG + chr1_2:15809561-15809580 Msa0059110:CDS 50.0%
! TTTTCCCGTTCTCCAGCTGT+TGG + chr1_2:15809698-15809717 Msa0059110:intron 50.0%
TTTCCCGTTCTCCAGCTGTT+GGG + chr1_2:15809699-15809718 Msa0059110:intron 50.0%
AAGTCCCAACAGCTGGAGAA+CGG - chr1_2:15809706-15809725 None:intergenic 50.0%
AGGAAGAAAGTCCCAACAGC+TGG - chr1_2:15809713-15809732 None:intergenic 50.0%
! TAAGCCCCCCTTTTCCGAAA+GGG - chr1_2:15810080-15810099 None:intergenic 50.0%
TAGCAACCGAGGAAGGTAAG+TGG + chr1_2:15810448-15810467 Msa0059110:intron 50.0%
CGAGAAAAAGTGGAGTCCCG+CGG - chr1_2:15805747-15805766 None:intergenic 55.0%
TTAAGCGGCTGACCTTGTGG+GGG + chr1_2:15806391-15806410 Msa0059110:intron 55.0%
AATAGCAGTCCTCCCCCACA+AGG - chr1_2:15806406-15806425 None:intergenic 55.0%
! CCCACAACACATCTTTGGGG+AGG + chr1_2:15806431-15806450 Msa0059110:intron 55.0%
CCCTCCCCAAAGATGTGTTG+TGG - chr1_2:15806435-15806454 None:intergenic 55.0%
! CACAGACATGTGTTGGCCAC+CGG - chr1_2:15806647-15806666 None:intergenic 55.0%
CAGGTCCCAACGTTGACAAC+AGG + chr1_2:15806776-15806795 Msa0059110:intron 55.0%
TTCCAGGGAGCAAAGTTGGC+AGG + chr1_2:15808032-15808051 Msa0059110:intron 55.0%
ATCCTGCCAACTTTGCTCCC+TGG - chr1_2:15808037-15808056 None:intergenic 55.0%
!! CGGGCGCTGAGCTAGAATTA+AGG + chr1_2:15808659-15808678 Msa0059110:CDS 55.0%
AAGACTGTCTTACGCCCCAC+AGG - chr1_2:15808991-15809010 None:intergenic 55.0%
GAATGTGGGTTCCAACCACG+AGG + chr1_2:15809136-15809155 Msa0059110:CDS 55.0%
!! ACCCTCTGAAGTTGCTGCTG+AGG + chr1_2:15809362-15809381 Msa0059110:CDS 55.0%
GGAGGCTGAAGGCGAAGAAA+AGG + chr1_2:15809452-15809471 Msa0059110:CDS 55.0%
CAATGGGGCAGGTGAAGGAA+AGG + chr1_2:15809539-15809558 Msa0059110:CDS 55.0%
!! GGTGACTGAAGGTGCCGAAA+AGG + chr1_2:15809560-15809579 Msa0059110:CDS 55.0%
! CCCAGTTTCCTGGCCCTTTT+CGG - chr1_2:15809577-15809596 None:intergenic 55.0%
CCGAAAAGGGCCAGGAAACT+GGG + chr1_2:15809574-15809593 Msa0059110:CDS 55.0%
AGTCCCAACAGCTGGAGAAC+GGG - chr1_2:15809705-15809724 None:intergenic 55.0%
CGTGCTTTCTGAGCAGCTTC+AGG - chr1_2:15810046-15810065 None:intergenic 55.0%
TGCTGCAGCCCTTTCGGAAA+AGG + chr1_2:15810069-15810088 Msa0059110:CDS 55.0%
GCTGCAGCCCTTTCGGAAAA+GGG + chr1_2:15810070-15810089 Msa0059110:CDS 55.0%
CTGCAGCCCTTTCGGAAAAG+GGG + chr1_2:15810071-15810090 Msa0059110:CDS 55.0%
TGCAGCCCTTTCGGAAAAGG+GGG + chr1_2:15810072-15810091 Msa0059110:CDS 55.0%
! CTAAGCCCCCCTTTTCCGAA+AGG - chr1_2:15810081-15810100 None:intergenic 55.0%
CAATACTGGAGCCAGCTTCG+TGG + chr1_2:15810398-15810417 Msa0059110:CDS 55.0%
!! TGCGTGCCACTTACCTTCCT+CGG - chr1_2:15810457-15810476 None:intergenic 55.0%
!! ACCTTTTCAGGGGAGGAGGA+AGG + chr1_2:15810563-15810582 Msa0059110:intron 55.0%
ACCTTCCTCCTCCCCTGAAA+AGG - chr1_2:15810567-15810586 None:intergenic 55.0%
TTCAGGGGAGGAGGAAGGTA+TGG + chr1_2:15810568-15810587 Msa0059110:intron 55.0%
! GGAGGAGGAAGGTATGGTAG+AGG + chr1_2:15810574-15810593 Msa0059110:CDS 55.0%
! GGAGGAAGGTATGGTAGAGG+AGG + chr1_2:15810577-15810596 Msa0059110:CDS 55.0%
!! TGTGAAGTACCGGCGGTACC+AGG + chr1_2:15805708-15805727 Msa0059110:intron 60.0%
TTGGGTCCCTTGGGCTGACT+AGG + chr1_2:15806511-15806530 Msa0059110:intron 60.0%
TGGGTCCCTTGGGCTGACTA+GGG + chr1_2:15806512-15806531 Msa0059110:intron 60.0%
CCTGACCCTAGTCAGCCCAA+GGG - chr1_2:15806520-15806539 None:intergenic 60.0%
CCTTGGGCTGACTAGGGTCA+GGG + chr1_2:15806518-15806537 Msa0059110:intron 60.0%
TAGGGTCAGGGTAGGCCTCA+AGG + chr1_2:15806530-15806549 Msa0059110:intron 60.0%
TCAGCGCTCTGTGAGCCTTG+AGG - chr1_2:15806548-15806567 None:intergenic 60.0%
! CTGATCGAAAGCGTGTCCGG+TGG + chr1_2:15806628-15806647 Msa0059110:intron 60.0%
TGGGGCCACTGTGGTACCAA+AGG + chr1_2:15806869-15806888 Msa0059110:intron 60.0%
TGGGGCCTTTGGTACCACAG+TGG - chr1_2:15806877-15806896 None:intergenic 60.0%
GTTCGGTTGCCCCGTCATGT+TGG + chr1_2:15808547-15808566 Msa0059110:CDS 60.0%
TGTGGGTTCCAACCACGAGG+AGG + chr1_2:15809139-15809158 Msa0059110:CDS 60.0%
!! TGAAGGTGCCGAAAAGGGCC+AGG + chr1_2:15809566-15809585 Msa0059110:CDS 60.0%
GCCGAAAAGGGCCAGGAAAC+TGG + chr1_2:15809573-15809592 Msa0059110:CDS 60.0%
! ACGTGCTGCTGCAGCCCTTT+CGG + chr1_2:15810063-15810082 Msa0059110:CDS 60.0%
GCAGCCCTTTCGGAAAAGGG+GGG + chr1_2:15810073-15810092 Msa0059110:CDS 60.0%
AGGCACGTACCTGGTACCGC+CGG - chr1_2:15805720-15805739 None:intergenic 65.0%
CAGGTACGTGCCTGGTACCG+CGG + chr1_2:15805727-15805746 Msa0059110:intron 65.0%
AGGTACGTGCCTGGTACCGC+GGG + chr1_2:15805728-15805747 Msa0059110:intron 65.0%
AAGTGGAGTCCCGCGGTACC+AGG - chr1_2:15805740-15805759 None:intergenic 65.0%
CCCTTGGGCTGACTAGGGTC+AGG + chr1_2:15806517-15806536 Msa0059110:intron 65.0%
CCCTGACCCTAGTCAGCCCA+AGG - chr1_2:15806521-15806540 None:intergenic 65.0%
GGGCTGACTAGGGTCAGGGT+AGG + chr1_2:15806522-15806541 Msa0059110:intron 65.0%
GATGCTCTGTGGGGCCACTG+TGG + chr1_2:15806860-15806879 Msa0059110:intron 65.0%
GGCGGTACCAGGTACGTGCC+TGG + chr1_2:15805719-15805738 Msa0059110:intron 70.0%
CGCGGTACCAGGCACGTACC+TGG - chr1_2:15805729-15805748 None:intergenic 70.0%
AGCGGCTGACCTTGTGGGGG+AGG + chr1_2:15806394-15806413 Msa0059110:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15805210 15810931 15805210 ID=Msa0059110;Name=Msa0059110
chr1_2 mRNA 15805210 15810931 15805210 ID=Msa0059110-mRNA-1;Parent=Msa0059110;Name=Msa0059110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=104|1|1|1|1|1|10|265|473
chr1_2 exon 15805210 15805364 15805210 ID=Msa0059110-mRNA-1:exon:6409;Parent=Msa0059110-mRNA-1
chr1_2 exon 15805450 15805528 15805450 ID=Msa0059110-mRNA-1:exon:6410;Parent=Msa0059110-mRNA-1
chr1_2 exon 15807023 15807175 15807023 ID=Msa0059110-mRNA-1:exon:6411;Parent=Msa0059110-mRNA-1
chr1_2 exon 15808038 15808180 15808038 ID=Msa0059110-mRNA-1:exon:6412;Parent=Msa0059110-mRNA-1
chr1_2 exon 15808538 15808686 15808538 ID=Msa0059110-mRNA-1:exon:6413;Parent=Msa0059110-mRNA-1
chr1_2 exon 15809079 15809183 15809079 ID=Msa0059110-mRNA-1:exon:6414;Parent=Msa0059110-mRNA-1
chr1_2 exon 15809266 15809686 15809266 ID=Msa0059110-mRNA-1:exon:6415;Parent=Msa0059110-mRNA-1
chr1_2 exon 15809992 15810139 15809992 ID=Msa0059110-mRNA-1:exon:6416;Parent=Msa0059110-mRNA-1
chr1_2 exon 15810384 15810462 15810384 ID=Msa0059110-mRNA-1:exon:6417;Parent=Msa0059110-mRNA-1
chr1_2 exon 15810573 15810931 15810573 ID=Msa0059110-mRNA-1:exon:6418;Parent=Msa0059110-mRNA-1
chr1_2 five_prime_UTR 15805210 15805313 15805210 ID=Msa0059110-mRNA-1:five_prime_utr;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15805314 15805364 15805314 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15805450 15805528 15805450 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15807023 15807175 15807023 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15808038 15808180 15808038 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15808538 15808686 15808538 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15809079 15809183 15809079 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15809266 15809686 15809266 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15809992 15810139 15809992 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15810384 15810462 15810384 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 CDS 15810573 15810666 15810573 ID=Msa0059110-mRNA-1:cds;Parent=Msa0059110-mRNA-1
chr1_2 three_prime_UTR 15810667 15810931 15810667 ID=Msa0059110-mRNA-1:three_prime_utr;Parent=Msa0059110-mRNA-1
Gene Sequence

>Msa0059110

ATGGCGAAACATTCACTTGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTGAATTTTATTTCAGTGATAGTAATCTTCCCAGGGATGATTTCTTGAGCAAAACTGTCAATGAAAGTGAAGATGGAATGGTTAGTTTGGCTTTGCTTTGTTCCTTCAATCGGATGCGAAAGCATCTTAAGTTGGCTGATGATACTAAGCCCGCTGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCAGAAGATGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGGTAATTGAGCAGGTTGAGATAAGAACGATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTCGGTCAATATGCCAAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCGGGCGCTGAGCTAGAATTAAGGCCAAAGCAGGACTTTGACGCAGAAAGAGAAAAAGAATTAGAAAAGCATGAAAAATCTCGTAAGAATGTGGGTTCCAACCACGAGGAGGATAACACAAATACAGAAGAAGACTACCCTAAAGGCTTAGTTATAGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTCCAGAAAAGAATAATGACGTGACCAAAACAGATGAGCAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAAAACAATGGAGTGAACGAAGGAAAGGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATAGGGTGAAGGAAGAAAAGGAGACTGAAGTTGAAGAGAAGAGCCTAGAAAACAATGGGGCAGGTGAAGGAAAGGTGACTGAAGGTGCCGAAAAGGGCCAGGAAACTGGGAAAAAAACAGCTGTTATTTTCAAGAACGACTCAGATGTTGTCTTACGTGAAGATTTGAAGGTTGTGTTTCAGAAGTTTGGTGATGTGAAGTACATAGATTTCAATATGGGAGATGAGTCAGGCTTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGCCCTTTCGGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTTACCGGTGAAGCTGAAAAACAATACTGGAGCCAGCTTCGTGGTAAACAAGATATACGCAGAGAAAGTTTTAGCAACCGAGGAAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAATTTTCGCGTAATAGAGACAATGATTCTGGACGAGGTCGCCAAAGTAAATATAGAAAGTATTAA

Protein sequence

>Msa0059110

MAKHSLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELRPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEEDYPKGLVIAFKLKSSSDEVPEKNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVNEGKEAEGEEKEQEKNRVKEEKETEVEEKSLENNGAGEGKVTEGAEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYWSQLRGKQDIRRESFSNRGRGGGRYGRGGKFSRNRDNDSGRGRQSKYRKY*