Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611410 | XP_003607966.1 | 91.197 | 284 | 25 | 0 | 1 | 284 | 1 | 284 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611410 | Msa0651840 | 0.842978 | 1.858388e-58 | -8.615850e-47 |
| Msa0611410 | Msa0694120 | 0.826215 | 3.065194e-54 | -8.615850e-47 |
| Msa0519950 | Msa0611410 | 0.800614 | 1.327113e-48 | -8.615850e-47 |
| Msa0550120 | Msa0611410 | 0.804110 | 2.527703e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611410 | MtrunA17_Chr4g0044801 | 91.197 | 284 | 25 | 0 | 1 | 284 | 1 | 284 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAACGACGAACAGATTT+TGG | 0.138569 | 4_2:-59611032 | None:intergenic |
| CGGCGACGCCGCTCCGTTTA+AGG | 0.175878 | 4_2:+59608101 | Msa0611410:CDS |
| GTCATATCTTAGTTCTTTAG+AGG | 0.270733 | 4_2:+59609149 | Msa0611410:CDS |
| TTTCAAGCTTGATCTTCTTC+TGG | 0.301755 | 4_2:-59609414 | None:intergenic |
| CTGTTCGTCGTTGCATTCTC+AGG | 0.311602 | 4_2:+59611039 | Msa0611410:CDS |
| AATTCATGGCCTTCATTCTC+TGG | 0.332105 | 4_2:-59610978 | None:intergenic |
| GCAGCATGCCCATGGCTAAA+AGG | 0.335052 | 4_2:+59610773 | Msa0611410:CDS |
| GCTGATTCTCATGTTGTTGC+AGG | 0.351005 | 4_2:+59609463 | Msa0611410:CDS |
| AAACCATGGTCATAGGTATT+AGG | 0.356119 | 4_2:-59609535 | None:intergenic |
| TATGAGCAGGTTGTCCCATT+TGG | 0.359262 | 4_2:+59610912 | Msa0611410:intron |
| GGAGGTGTTGTCGGCGGTGG+TGG | 0.380119 | 4_2:-59608079 | None:intergenic |
| TTTGGGACACGGAAACTCTC+TGG | 0.384612 | 4_2:-59611014 | None:intergenic |
| CATGGGCATGCTGCTTGAAC+TGG | 0.388086 | 4_2:-59610764 | None:intergenic |
| TCAGCTGCGCTCTCTAACAT+AGG | 0.395468 | 4_2:-59609445 | None:intergenic |
| CTGACCTGCCTATGCATACT+AGG | 0.400834 | 4_2:-59609273 | None:intergenic |
| GTTCTATACATTTACATGGT+TGG | 0.408545 | 4_2:+59609196 | Msa0611410:CDS |
| TTATCTACCATTGCAGCTCC+TGG | 0.417378 | 4_2:-59609493 | None:intergenic |
| GCAAAGTAAACCATGGTCAT+AGG | 0.430258 | 4_2:-59609542 | None:intergenic |
| GGTGTTGTCGGCGGTGGTGG+CGG | 0.431602 | 4_2:-59608076 | None:intergenic |
| CATCGTTCTATACATTTACA+TGG | 0.435614 | 4_2:+59609192 | Msa0611410:CDS |
| TTTGGAAAGTTTCAGACTGC+TGG | 0.436663 | 4_2:+59610930 | Msa0611410:CDS |
| GCAGTCTGAAACTTTCCAAA+TGG | 0.443560 | 4_2:-59610927 | None:intergenic |
| GTTGTCGGCGGTGGTGGCGG+AGG | 0.447565 | 4_2:-59608073 | None:intergenic |
| GAGTGTGAAGTTACCTTAAA+CGG | 0.448421 | 4_2:-59608114 | None:intergenic |
| GGCGTCGCCGGAGGTGTTGT+CGG | 0.454876 | 4_2:-59608088 | None:intergenic |
| GAGTCGGATTGCAGTACTAT+AGG | 0.456476 | 4_2:+59609652 | Msa0611410:CDS |
| GGCGGTGGTGGCGGAGGAGT+CGG | 0.456643 | 4_2:-59608067 | None:intergenic |
| GCCGGAGGTGTTGTCGGCGG+TGG | 0.470695 | 4_2:-59608082 | None:intergenic |
| CGGAGGGGAACGTCGGCGAA+TGG | 0.473651 | 4_2:-59608014 | None:intergenic |
| ACCACCGCCGACAACACCTC+CGG | 0.486058 | 4_2:+59608081 | Msa0611410:CDS |
| ATGGTTGGAGCTTTCACAGT+AGG | 0.491144 | 4_2:+59609211 | Msa0611410:CDS |
| CTTAAACGGAGCGGCGTCGC+CGG | 0.497093 | 4_2:-59608100 | None:intergenic |
| GGAGTTGAGATAGCAATTCA+TGG | 0.498699 | 4_2:-59610992 | None:intergenic |
| CAGCTGCGCTCTCTAACATA+GGG | 0.501825 | 4_2:-59609444 | None:intergenic |
| TGGTTGGAGCTTTCACAGTA+GGG | 0.507307 | 4_2:+59609212 | Msa0611410:CDS |
| TACTCCTAGTATGCATAGGC+AGG | 0.513247 | 4_2:+59609269 | Msa0611410:CDS |
| CGAGTCAACTCGGGACCGGA+GGG | 0.514047 | 4_2:-59608030 | None:intergenic |
| TTGGGACACGGAAACTCTCT+GGG | 0.514398 | 4_2:-59611013 | None:intergenic |
| TACTGCAATCCGACTCTGCA+TGG | 0.515249 | 4_2:-59609645 | None:intergenic |
| GATCTGTCCAGCGTCTAGAC+TGG | 0.525092 | 4_2:-59609116 | None:intergenic |
| AGAAGCGGAGCGAGTCAACT+CGG | 0.527050 | 4_2:-59608040 | None:intergenic |
| GGAGCGAGTCAACTCGGGAC+CGG | 0.532546 | 4_2:-59608034 | None:intergenic |
| CAGTCTCTGGCTCTACAAGA+TGG | 0.536291 | 4_2:+59609388 | Msa0611410:intron |
| CATTCGCCGACGTTCCCCTC+CGG | 0.539419 | 4_2:+59608015 | Msa0611410:CDS |
| CAGTCTGAAACTTTCCAAAT+GGG | 0.540796 | 4_2:-59610926 | None:intergenic |
| GCGAGTCAACTCGGGACCGG+AGG | 0.541007 | 4_2:-59608031 | None:intergenic |
| TTGCTTCTCCACACAACTTG+CGG | 0.541525 | 4_2:-59609614 | None:intergenic |
| ACAACTTGCGGCTGACATGT+TGG | 0.543608 | 4_2:-59609602 | None:intergenic |
| CATGTCAGCCGCAAGTTGTG+TGG | 0.549493 | 4_2:+59609606 | Msa0611410:CDS |
| AAACGGAGCGGCGTCGCCGG+AGG | 0.558507 | 4_2:-59608097 | None:intergenic |
| AAGTGAACCAGGAGCTGCAA+TGG | 0.564449 | 4_2:+59609486 | Msa0611410:CDS |
| GGCAAATGCTGAACTCCCGC+TGG | 0.566895 | 4_2:-59609581 | None:intergenic |
| GTTGTTGCAGGAAGTGAACC+AGG | 0.568696 | 4_2:+59609475 | Msa0611410:CDS |
| CCATGGTTTACTTTGCGACA+AGG | 0.568719 | 4_2:+59609549 | Msa0611410:CDS |
| ACAAGGAGATTCATGCCAGC+GGG | 0.569007 | 4_2:+59609566 | Msa0611410:CDS |
| CAGTTCAAGCAGCATGCCCA+TGG | 0.569164 | 4_2:+59610765 | Msa0611410:CDS |
| GAAGCGGAGCGAGTCAACTC+GGG | 0.571539 | 4_2:-59608039 | None:intergenic |
| GGTCAGTGATCAGAACTTCA+AGG | 0.574496 | 4_2:+59610732 | Msa0611410:CDS |
| AGGGGAACGTCGGCGAATGG+AGG | 0.580420 | 4_2:-59608011 | None:intergenic |
| AATTCAACACCAGAGAATGA+AGG | 0.581399 | 4_2:+59610969 | Msa0611410:CDS |
| AAAATACTCCTAGTATGCAT+AGG | 0.589165 | 4_2:+59609265 | Msa0611410:CDS |
| TGTTCGTCGTTGCATTCTCA+GGG | 0.590260 | 4_2:+59611040 | Msa0611410:CDS |
| TAAATTCCACAGTACTTGAT+CGG | 0.594214 | 4_2:-59610827 | None:intergenic |
| GAGCCTAATACCTATGACCA+TGG | 0.605194 | 4_2:+59609532 | Msa0611410:CDS |
| GACAAGGAGATTCATGCCAG+CGG | 0.608297 | 4_2:+59609565 | Msa0611410:CDS |
| TCGGGACCGGAGGGGAACGT+CGG | 0.611595 | 4_2:-59608021 | None:intergenic |
| GTCGTTGCATTCTCAGGGAT+AGG | 0.613936 | 4_2:+59611045 | Msa0611410:CDS |
| AATGGAGGTTACGACGGAGA+GGG | 0.631319 | 4_2:-59607996 | None:intergenic |
| ATGTTCATTCCATGCAGAGT+CGG | 0.633709 | 4_2:+59609636 | Msa0611410:CDS |
| ACCAGGACCAGTCTAGACGC+TGG | 0.642505 | 4_2:+59609109 | Msa0611410:intron |
| TTGAAGACTGATGCAGCTGA+TGG | 0.643170 | 4_2:+59610796 | Msa0611410:CDS |
| GTCGCCGGAGGTGTTGTCGG+CGG | 0.654122 | 4_2:-59608085 | None:intergenic |
| GAATGGAGGTTACGACGGAG+AGG | 0.660383 | 4_2:-59607997 | None:intergenic |
| CCTTGTCGCAAAGTAAACCA+TGG | 0.678411 | 4_2:-59609549 | None:intergenic |
| AGCTGCGCTCTCTAACATAG+GGG | 0.693425 | 4_2:-59609443 | None:intergenic |
| TCGGCGAATGGAGGTTACGA+CGG | 0.703235 | 4_2:-59608002 | None:intergenic |
| GAGTCAACTCGGGACCGGAG+GGG | 0.705777 | 4_2:-59608029 | None:intergenic |
| TGAAGTTACCTTAAACGGAG+CGG | 0.719373 | 4_2:-59608109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTAATATCTAATAT+TGG | + | chr4_2:59608855-59608874 | Msa0611410:intron | 10.0% |
| !! | TTTGAATATTAACATTTAAA+GGG | + | chr4_2:59610049-59610068 | Msa0611410:intron | 10.0% |
| !!! | ATCATTTTAGTAAATTGTTT+CGG | + | chr4_2:59608577-59608596 | Msa0611410:intron | 15.0% |
| !! | CTTTGAATATTAACATTTAA+AGG | + | chr4_2:59610048-59610067 | Msa0611410:intron | 15.0% |
| !!! | TTTTTTATTTGTCATATTAG+AGG | + | chr4_2:59610711-59610730 | Msa0611410:intron | 15.0% |
| !!! | TGCTTCGATTTTTTTTTTTA+TGG | + | chr4_2:59608190-59608209 | Msa0611410:intron | 20.0% |
| !! | GAATGTAAAAAGAACAAATA+AGG | + | chr4_2:59608718-59608737 | Msa0611410:intron | 20.0% |
| !!! | TAAGGAAAATCATTTTGAAA+AGG | + | chr4_2:59608736-59608755 | Msa0611410:intron | 20.0% |
| !!! | TTTTTGATTGCTTGTAAATT+CGG | + | chr4_2:59609060-59609079 | Msa0611410:intron | 20.0% |
| !!! | TTAATTCTAAATTTTGTACC+AGG | + | chr4_2:59609092-59609111 | Msa0611410:intron | 20.0% |
| !! | AATTAAGTTTCTCTAAACAT+TGG | + | chr4_2:59609853-59609872 | Msa0611410:intron | 20.0% |
| !! | AATGTATGACATAAATTTGT+TGG | + | chr4_2:59610310-59610329 | Msa0611410:intron | 20.0% |
| !!! | CTGTATTTAAATGAGTTTTA+TGG | + | chr4_2:59610503-59610522 | Msa0611410:intron | 20.0% |
| !!! | AAATAGTTTAAAAGCATAGT+GGG | - | chr4_2:59610580-59610599 | None:intergenic | 20.0% |
| !!! | AAAATAGTTTAAAAGCATAG+TGG | - | chr4_2:59610581-59610600 | None:intergenic | 20.0% |
| !! | AATCTCAAGTAAATTTGAAT+GGG | + | chr4_2:59610865-59610884 | Msa0611410:intron | 20.0% |
| ! | AAAACATAAACTCTAAACCA+CGG | - | chr4_2:59608379-59608398 | None:intergenic | 25.0% |
| !! | GTATAATTTGTACATCTGTA+TGG | + | chr4_2:59608512-59608531 | Msa0611410:intron | 25.0% |
| ! | CAGAGATATTGAGATATTAT+AGG | - | chr4_2:59608934-59608953 | None:intergenic | 25.0% |
| ! | CTATAATATCTCAATATCTC+TGG | + | chr4_2:59608932-59608951 | Msa0611410:intron | 25.0% |
| ! | ATTGTCAATTTCAAACTCTT+GGG | - | chr4_2:59609012-59609031 | None:intergenic | 25.0% |
| ! | TATTGTCAATTTCAAACTCT+TGG | - | chr4_2:59609013-59609032 | None:intergenic | 25.0% |
| !!! | ATAATAAAGAGTGTCTATCA+TGG | + | chr4_2:59609030-59609049 | Msa0611410:intron | 25.0% |
| !!! | TAATAAAGAGTGTCTATCAT+GGG | + | chr4_2:59609031-59609050 | Msa0611410:intron | 25.0% |
| !!! | ATTTTTTTCCCAGTATAATC+AGG | + | chr4_2:59609340-59609359 | Msa0611410:intron | 25.0% |
| ! | AGGAAAAAAAAGGGATAAAA+AGG | - | chr4_2:59609366-59609385 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTTTTTGCATGT+TGG | + | chr4_2:59609685-59609704 | Msa0611410:intron | 25.0% |
| !! | TATTTAGTTTAAATGACCAC+TGG | + | chr4_2:59609889-59609908 | Msa0611410:intron | 25.0% |
| !!! | CCAAGAGAGTTTTTATTTAT+GGG | + | chr4_2:59610110-59610129 | Msa0611410:intron | 25.0% |
| ! | GCCTTTATAGATTTACATTT+GGG | + | chr4_2:59610151-59610170 | Msa0611410:intron | 25.0% |
| ! | ACCCAAATGTAAATCTATAA+AGG | - | chr4_2:59610155-59610174 | None:intergenic | 25.0% |
| ! | TTTATGGTCCTTTAAATAAG+TGG | + | chr4_2:59610519-59610538 | Msa0611410:intron | 25.0% |
| ! | CTTGAAAACCACTTATTTAA+AGG | - | chr4_2:59610530-59610549 | None:intergenic | 25.0% |
| !! | AATAGTTTAAAAGCATAGTG+GGG | - | chr4_2:59610579-59610598 | None:intergenic | 25.0% |
| ! | AATTTACTTGAGATTGTTTC+AGG | - | chr4_2:59610860-59610879 | None:intergenic | 25.0% |
| ! | CAATCTCAAGTAAATTTGAA+TGG | + | chr4_2:59610864-59610883 | Msa0611410:intron | 25.0% |
| ! | GAAAAAATTGCGAGTTTTTG+TGG | + | chr4_2:59608214-59608233 | Msa0611410:intron | 30.0% |
| AAATCCAAACAGCTATTTAC+AGG | - | chr4_2:59608271-59608290 | None:intergenic | 30.0% | |
| ! | TAGAAGATCTGAAATTGCTA+AGG | + | chr4_2:59608444-59608463 | Msa0611410:intron | 30.0% |
| !! | TTATATCCATGAGCTTGTTT+TGG | + | chr4_2:59608616-59608635 | Msa0611410:intron | 30.0% |
| TTGTCAATTTCAAACTCTTG+GGG | - | chr4_2:59609011-59609030 | None:intergenic | 30.0% | |
| ! | GTCATATCTTAGTTCTTTAG+AGG | + | chr4_2:59609149-59609168 | Msa0611410:CDS | 30.0% |
| CATCGTTCTATACATTTACA+TGG | + | chr4_2:59609192-59609211 | Msa0611410:CDS | 30.0% | |
| GTTCTATACATTTACATGGT+TGG | + | chr4_2:59609196-59609215 | Msa0611410:CDS | 30.0% | |
| AAAATACTCCTAGTATGCAT+AGG | + | chr4_2:59609265-59609284 | Msa0611410:CDS | 30.0% | |
| ATTACCACACATAAACACAA+TGG | - | chr4_2:59609322-59609341 | None:intergenic | 30.0% | |
| TAAAAAGGCCTGATTATACT+GGG | - | chr4_2:59609351-59609370 | None:intergenic | 30.0% | |
| ATAAAAAGGCCTGATTATAC+TGG | - | chr4_2:59609352-59609371 | None:intergenic | 30.0% | |
| GAGACTGAAAGGAAAAAAAA+GGG | - | chr4_2:59609375-59609394 | None:intergenic | 30.0% | |
| AGAGACTGAAAGGAAAAAAA+AGG | - | chr4_2:59609376-59609395 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCCTTTCAGTCTC+TGG | + | chr4_2:59609375-59609394 | Msa0611410:intron | 30.0% |
| AAAACAACATCTTGTGTACA+AGG | - | chr4_2:59609763-59609782 | None:intergenic | 30.0% | |
| ACTATATGCATATACCTTGA+GGG | - | chr4_2:59609795-59609814 | None:intergenic | 30.0% | |
| TAACTGATATGCAATGTCTA+TGG | - | chr4_2:59609926-59609945 | None:intergenic | 30.0% | |
| !! | GCCAAGAGAGTTTTTATTTA+TGG | + | chr4_2:59610109-59610128 | Msa0611410:intron | 30.0% |
| CCCATAAATAAAAACTCTCT+TGG | - | chr4_2:59610113-59610132 | None:intergenic | 30.0% | |
| GGCCTTTATAGATTTACATT+TGG | + | chr4_2:59610150-59610169 | Msa0611410:intron | 30.0% | |
| ! | TTCTTTTTATGCTTTGACAG+TGG | + | chr4_2:59610175-59610194 | Msa0611410:intron | 30.0% |
| ! | TCTTTTTATGCTTTGACAGT+GGG | + | chr4_2:59610176-59610195 | Msa0611410:intron | 30.0% |
| TAGTTATGTATAAAGCCTTG+TGG | - | chr4_2:59610232-59610251 | None:intergenic | 30.0% | |
| TTGATTCACTTCTCATAGAA+AGG | - | chr4_2:59610362-59610381 | None:intergenic | 30.0% | |
| CTAATAGTTCAGTTTACTTG+AGG | - | chr4_2:59610387-59610406 | None:intergenic | 30.0% | |
| AATATCACAACCTTATTCCT+GGG | - | chr4_2:59610678-59610697 | None:intergenic | 30.0% | |
| AAATATCACAACCTTATTCC+TGG | - | chr4_2:59610679-59610698 | None:intergenic | 30.0% | |
| TAAATTCCACAGTACTTGAT+CGG | - | chr4_2:59610830-59610849 | None:intergenic | 30.0% | |
| GAGTGTGAAGTTACCTTAAA+CGG | - | chr4_2:59608117-59608136 | None:intergenic | 35.0% | |
| TGTTCCTGTAAATAGCTGTT+TGG | + | chr4_2:59608264-59608283 | Msa0611410:intron | 35.0% | |
| AAGGATTAATGTCATAGTCG+AGG | + | chr4_2:59608463-59608482 | Msa0611410:intron | 35.0% | |
| TCAAATCCAAAACAAGCTCA+TGG | - | chr4_2:59608625-59608644 | None:intergenic | 35.0% | |
| CTCTGATTGTTAACGGAAAA+TGG | - | chr4_2:59608664-59608683 | None:intergenic | 35.0% | |
| GAGCTATCTCTGATTGTTAA+CGG | - | chr4_2:59608671-59608690 | None:intergenic | 35.0% | |
| TTCATGACTCAACTCATGAA+AGG | + | chr4_2:59608696-59608715 | Msa0611410:intron | 35.0% | |
| AAGAGATTTCGTACCATTGT+TGG | + | chr4_2:59608819-59608838 | Msa0611410:intron | 35.0% | |
| TTTCAAGCTTGATCTTCTTC+TGG | - | chr4_2:59609417-59609436 | None:intergenic | 35.0% | |
| AAACCATGGTCATAGGTATT+AGG | - | chr4_2:59609538-59609557 | None:intergenic | 35.0% | |
| GACTATATGCATATACCTTG+AGG | - | chr4_2:59609796-59609815 | None:intergenic | 35.0% | |
| ! | TTTCCTGCAGTAAAAGCTTT+TGG | + | chr4_2:59609955-59609974 | Msa0611410:intron | 35.0% |
| ! | ATTCCAAAAGCTTTTACTGC+AGG | - | chr4_2:59609961-59609980 | None:intergenic | 35.0% |
| TGTTGTAATGTATGCTGCAA+TGG | + | chr4_2:59609992-59610011 | Msa0611410:intron | 35.0% | |
| !! | ATGTATGCTGCAATGGATTA+AGG | + | chr4_2:59609999-59610018 | Msa0611410:intron | 35.0% |
| !! | TGTATGCTGCAATGGATTAA+GGG | + | chr4_2:59610000-59610019 | Msa0611410:intron | 35.0% |
| ! | GGATTAAGGGGGTTAAATTT+TGG | + | chr4_2:59610013-59610032 | Msa0611410:intron | 35.0% |
| !!! | TGACAGTGGGTTTTTTAATG+TGG | + | chr4_2:59610189-59610208 | Msa0611410:intron | 35.0% |
| !!! | AGTGGGTTTTTTAATGTGGA+TGG | + | chr4_2:59610193-59610212 | Msa0611410:intron | 35.0% |
| CAATTAGAGCAAGAGAACAA+AGG | - | chr4_2:59610269-59610288 | None:intergenic | 35.0% | |
| ACTGAACTATTAGATCATCC+AGG | + | chr4_2:59610394-59610413 | Msa0611410:intron | 35.0% | |
| CTGAACTATTAGATCATCCA+GGG | + | chr4_2:59610395-59610414 | Msa0611410:intron | 35.0% | |
| !!! | ATTGTGATAGTTTTTTGCCC+AGG | + | chr4_2:59610658-59610677 | Msa0611410:intron | 35.0% |
| !!! | TAGTTTTTTGCCCAGGAATA+AGG | + | chr4_2:59610665-59610684 | Msa0611410:intron | 35.0% |
| ! | TTCATGTTCCTTTTATGAGC+AGG | + | chr4_2:59610899-59610918 | Msa0611410:intron | 35.0% |
| ! | CAGTCTGAAACTTTCCAAAT+GGG | - | chr4_2:59610929-59610948 | None:intergenic | 35.0% |
| AATTCAACACCAGAGAATGA+AGG | + | chr4_2:59610969-59610988 | Msa0611410:CDS | 35.0% | |
| TGAAGTTACCTTAAACGGAG+CGG | - | chr4_2:59608112-59608131 | None:intergenic | 40.0% | |
| TCTCGAAATTGTGCTTTGCA+TGG | + | chr4_2:59608342-59608361 | Msa0611410:intron | 40.0% | |
| TCATAGTCGAGGTTTAACTG+TGG | + | chr4_2:59608474-59608493 | Msa0611410:intron | 40.0% | |
| ACACAATGGAGACTCTAAAC+TGG | - | chr4_2:59609308-59609327 | None:intergenic | 40.0% | |
| GTCTCCATTGTGTTTATGTG+TGG | + | chr4_2:59609315-59609334 | Msa0611410:intron | 40.0% | |
| GCAAAGTAAACCATGGTCAT+AGG | - | chr4_2:59609545-59609564 | None:intergenic | 40.0% | |
| ATGTTCATTCCATGCAGAGT+CGG | + | chr4_2:59609636-59609655 | Msa0611410:CDS | 40.0% | |
| TACAAGGTGCAAGAAAAGAC+AGG | - | chr4_2:59609747-59609766 | None:intergenic | 40.0% | |
| TATGGCATTGTTTAAGCCAG+TGG | - | chr4_2:59609908-59609927 | None:intergenic | 40.0% | |
| !! | GTATGCTGCAATGGATTAAG+GGG | + | chr4_2:59610001-59610020 | Msa0611410:intron | 40.0% |
| !! | TATGCTGCAATGGATTAAGG+GGG | + | chr4_2:59610002-59610021 | Msa0611410:intron | 40.0% |
| !! | GGTTTATTGACTCTTCCACA+AGG | + | chr4_2:59610214-59610233 | Msa0611410:intron | 40.0% |
| ! | TTTTGCAAGACTATTCCACG+TGG | + | chr4_2:59610598-59610617 | Msa0611410:intron | 40.0% |
| TTTGCAAGACTATTCCACGT+GGG | + | chr4_2:59610599-59610618 | Msa0611410:intron | 40.0% | |
| ! | GTCTTCAACCTTTTAGCCAT+GGG | - | chr4_2:59610784-59610803 | None:intergenic | 40.0% |
| ! | AGTCTTCAACCTTTTAGCCA+TGG | - | chr4_2:59610785-59610804 | None:intergenic | 40.0% |
| ! | GCAGTCTGAAACTTTCCAAA+TGG | - | chr4_2:59610930-59610949 | None:intergenic | 40.0% |
| TTTGGAAAGTTTCAGACTGC+TGG | + | chr4_2:59610930-59610949 | Msa0611410:CDS | 40.0% | |
| AATTCATGGCCTTCATTCTC+TGG | - | chr4_2:59610981-59611000 | None:intergenic | 40.0% | |
| GGAGTTGAGATAGCAATTCA+TGG | - | chr4_2:59610995-59611014 | None:intergenic | 40.0% | |
| ! | TGCAACGACGAACAGATTTT+GGG | - | chr4_2:59611034-59611053 | None:intergenic | 40.0% |
| ! | ATGCAACGACGAACAGATTT+TGG | - | chr4_2:59611035-59611054 | None:intergenic | 40.0% |
| AACAGTCTCATTCACACGAC+TGG | - | chr4_2:59608245-59608264 | None:intergenic | 45.0% | |
| CCAAGACTATGAGCCAACAA+TGG | - | chr4_2:59608835-59608854 | None:intergenic | 45.0% | |
| !! | CCATTGTTGGCTCATAGTCT+TGG | + | chr4_2:59608832-59608851 | Msa0611410:intron | 45.0% |
| ATGGTTGGAGCTTTCACAGT+AGG | + | chr4_2:59609211-59609230 | Msa0611410:CDS | 45.0% | |
| TGGTTGGAGCTTTCACAGTA+GGG | + | chr4_2:59609212-59609231 | Msa0611410:CDS | 45.0% | |
| TACTCCTAGTATGCATAGGC+AGG | + | chr4_2:59609269-59609288 | Msa0611410:CDS | 45.0% | |
| TTGTAGAGCCAGAGACTGAA+AGG | - | chr4_2:59609386-59609405 | None:intergenic | 45.0% | |
| ! | GCTGATTCTCATGTTGTTGC+AGG | + | chr4_2:59609463-59609482 | Msa0611410:CDS | 45.0% |
| TTATCTACCATTGCAGCTCC+TGG | - | chr4_2:59609496-59609515 | None:intergenic | 45.0% | |
| GAGCCTAATACCTATGACCA+TGG | + | chr4_2:59609532-59609551 | Msa0611410:CDS | 45.0% | |
| CCTTGTCGCAAAGTAAACCA+TGG | - | chr4_2:59609552-59609571 | None:intergenic | 45.0% | |
| CCATGGTTTACTTTGCGACA+AGG | + | chr4_2:59609549-59609568 | Msa0611410:CDS | 45.0% | |
| TTGCTTCTCCACACAACTTG+CGG | - | chr4_2:59609617-59609636 | None:intergenic | 45.0% | |
| GAGTCGGATTGCAGTACTAT+AGG | + | chr4_2:59609652-59609671 | Msa0611410:CDS | 45.0% | |
| ! | GTTTTTCATGCTCACCCTCA+AGG | + | chr4_2:59609778-59609797 | Msa0611410:intron | 45.0% |
| CCAGTGTACATCAATCAGCA+GGG | + | chr4_2:59610084-59610103 | Msa0611410:intron | 45.0% | |
| CAGTGTACATCAATCAGCAG+GGG | + | chr4_2:59610085-59610104 | Msa0611410:intron | 45.0% | |
| TGGGACTAGAGTATGATGCA+TGG | + | chr4_2:59610129-59610148 | Msa0611410:intron | 45.0% | |
| GAACAAAGGCTCAGGTATCA+TGG | - | chr4_2:59610255-59610274 | None:intergenic | 45.0% | |
| TTAGATCATCCAGGGACAGA+AGG | + | chr4_2:59610403-59610422 | Msa0611410:intron | 45.0% | |
| AAGATTGTTCCTTCTGTCCC+TGG | - | chr4_2:59610415-59610434 | None:intergenic | 45.0% | |
| TAGAATTAGTATCGCCCACG+TGG | - | chr4_2:59610616-59610635 | None:intergenic | 45.0% | |
| GGTCAGTGATCAGAACTTCA+AGG | + | chr4_2:59610732-59610751 | Msa0611410:CDS | 45.0% | |
| TTGAAGACTGATGCAGCTGA+TGG | + | chr4_2:59610796-59610815 | Msa0611410:CDS | 45.0% | |
| TGGGACAACCTGCTCATAAA+AGG | - | chr4_2:59610910-59610929 | None:intergenic | 45.0% | |
| TATGAGCAGGTTGTCCCATT+TGG | + | chr4_2:59610912-59610931 | Msa0611410:intron | 45.0% | |
| !!! | GACGAACAGATTTTGGGACA+CGG | - | chr4_2:59611028-59611047 | None:intergenic | 45.0% |
| TGTTCGTCGTTGCATTCTCA+GGG | + | chr4_2:59611040-59611059 | Msa0611410:CDS | 45.0% | |
| AATGGAGGTTACGACGGAGA+GGG | - | chr4_2:59607999-59608018 | None:intergenic | 50.0% | |
| GGAGGAGTCGGAAAAAGAAG+CGG | - | chr4_2:59608058-59608077 | None:intergenic | 50.0% | |
| CTGACCTGCCTATGCATACT+AGG | - | chr4_2:59609276-59609295 | None:intergenic | 50.0% | |
| !! | CAGTCTCTGGCTCTACAAGA+TGG | + | chr4_2:59609388-59609407 | Msa0611410:intron | 50.0% |
| AGCTGCGCTCTCTAACATAG+GGG | - | chr4_2:59609446-59609465 | None:intergenic | 50.0% | |
| CAGCTGCGCTCTCTAACATA+GGG | - | chr4_2:59609447-59609466 | None:intergenic | 50.0% | |
| TCAGCTGCGCTCTCTAACAT+AGG | - | chr4_2:59609448-59609467 | None:intergenic | 50.0% | |
| GTTGTTGCAGGAAGTGAACC+AGG | + | chr4_2:59609475-59609494 | Msa0611410:CDS | 50.0% | |
| AAGTGAACCAGGAGCTGCAA+TGG | + | chr4_2:59609486-59609505 | Msa0611410:CDS | 50.0% | |
| GACAAGGAGATTCATGCCAG+CGG | + | chr4_2:59609565-59609584 | Msa0611410:CDS | 50.0% | |
| ACAAGGAGATTCATGCCAGC+GGG | + | chr4_2:59609566-59609585 | Msa0611410:CDS | 50.0% | |
| ACAACTTGCGGCTGACATGT+TGG | - | chr4_2:59609605-59609624 | None:intergenic | 50.0% | |
| TACTGCAATCCGACTCTGCA+TGG | - | chr4_2:59609648-59609667 | None:intergenic | 50.0% | |
| GCTGATTGATGTACACTGGC+TGG | - | chr4_2:59610083-59610102 | None:intergenic | 50.0% | |
| GCCAGTGTACATCAATCAGC+AGG | + | chr4_2:59610083-59610102 | Msa0611410:intron | 50.0% | |
| ! | CCCTGCTGATTGATGTACAC+TGG | - | chr4_2:59610087-59610106 | None:intergenic | 50.0% |
| GAGCAAGAGAACAAAGGCTC+AGG | - | chr4_2:59610263-59610282 | None:intergenic | 50.0% | |
| !! | CAAGCACCGATCAAGTACTG+TGG | + | chr4_2:59610821-59610840 | Msa0611410:intron | 50.0% |
| TTGGGACACGGAAACTCTCT+GGG | - | chr4_2:59611016-59611035 | None:intergenic | 50.0% | |
| ! | TTTGGGACACGGAAACTCTC+TGG | - | chr4_2:59611017-59611036 | None:intergenic | 50.0% |
| CTGTTCGTCGTTGCATTCTC+AGG | + | chr4_2:59611039-59611058 | Msa0611410:CDS | 50.0% | |
| GTCGTTGCATTCTCAGGGAT+AGG | + | chr4_2:59611045-59611064 | Msa0611410:CDS | 50.0% | |
| GAATGGAGGTTACGACGGAG+AGG | - | chr4_2:59608000-59608019 | None:intergenic | 55.0% | |
| TCGGCGAATGGAGGTTACGA+CGG | - | chr4_2:59608005-59608024 | None:intergenic | 55.0% | |
| AGAAGCGGAGCGAGTCAACT+CGG | - | chr4_2:59608043-59608062 | None:intergenic | 55.0% | |
| GCATGGCGATTAAGCTTCCG+TGG | + | chr4_2:59608359-59608378 | Msa0611410:intron | 55.0% | |
| GATCTGTCCAGCGTCTAGAC+TGG | - | chr4_2:59609119-59609138 | None:intergenic | 55.0% | |
| CATGTCAGCCGCAAGTTGTG+TGG | + | chr4_2:59609606-59609625 | Msa0611410:CDS | 55.0% | |
| ! | CATGGGCATGCTGCTTGAAC+TGG | - | chr4_2:59610767-59610786 | None:intergenic | 55.0% |
| CAGTTCAAGCAGCATGCCCA+TGG | + | chr4_2:59610765-59610784 | Msa0611410:CDS | 55.0% | |
| GCAGCATGCCCATGGCTAAA+AGG | + | chr4_2:59610773-59610792 | Msa0611410:CDS | 55.0% | |
| GAAGCGGAGCGAGTCAACTC+GGG | - | chr4_2:59608042-59608061 | None:intergenic | 60.0% | |
| ACCAGGACCAGTCTAGACGC+TGG | + | chr4_2:59609109-59609128 | Msa0611410:intron | 60.0% | |
| ! | TCCAGCGTCTAGACTGGTCC+TGG | - | chr4_2:59609113-59609132 | None:intergenic | 60.0% |
| GGCAAATGCTGAACTCCCGC+TGG | - | chr4_2:59609584-59609603 | None:intergenic | 60.0% | |
| AGGGGAACGTCGGCGAATGG+AGG | - | chr4_2:59608014-59608033 | None:intergenic | 65.0% | |
| CATTCGCCGACGTTCCCCTC+CGG | + | chr4_2:59608015-59608034 | Msa0611410:CDS | 65.0% | |
| GAGTCAACTCGGGACCGGAG+GGG | - | chr4_2:59608032-59608051 | None:intergenic | 65.0% | |
| CGAGTCAACTCGGGACCGGA+GGG | - | chr4_2:59608033-59608052 | None:intergenic | 65.0% | |
| GGAGCGAGTCAACTCGGGAC+CGG | - | chr4_2:59608037-59608056 | None:intergenic | 65.0% | |
| ACCACCGCCGACAACACCTC+CGG | + | chr4_2:59608081-59608100 | Msa0611410:CDS | 65.0% | |
| CTTAAACGGAGCGGCGTCGC+CGG | - | chr4_2:59608103-59608122 | None:intergenic | 65.0% | |
| CGGAGGGGAACGTCGGCGAA+TGG | - | chr4_2:59608017-59608036 | None:intergenic | 70.0% | |
| TCGGGACCGGAGGGGAACGT+CGG | - | chr4_2:59608024-59608043 | None:intergenic | 70.0% | |
| GCGAGTCAACTCGGGACCGG+AGG | - | chr4_2:59608034-59608053 | None:intergenic | 70.0% | |
| ! | GGTGTTGTCGGCGGTGGTGG+CGG | - | chr4_2:59608079-59608098 | None:intergenic | 70.0% |
| !! | GGAGGTGTTGTCGGCGGTGG+TGG | - | chr4_2:59608082-59608101 | None:intergenic | 70.0% |
| !! | GTCGCCGGAGGTGTTGTCGG+CGG | - | chr4_2:59608088-59608107 | None:intergenic | 70.0% |
| !! | GGCGTCGCCGGAGGTGTTGT+CGG | - | chr4_2:59608091-59608110 | None:intergenic | 70.0% |
| CGGCGACGCCGCTCCGTTTA+AGG | + | chr4_2:59608101-59608120 | Msa0611410:CDS | 70.0% | |
| !! | GGCGGTGGTGGCGGAGGAGT+CGG | - | chr4_2:59608070-59608089 | None:intergenic | 75.0% |
| !! | GTTGTCGGCGGTGGTGGCGG+AGG | - | chr4_2:59608076-59608095 | None:intergenic | 75.0% |
| !! | GCCGGAGGTGTTGTCGGCGG+TGG | - | chr4_2:59608085-59608104 | None:intergenic | 75.0% |
| AAACGGAGCGGCGTCGCCGG+AGG | - | chr4_2:59608100-59608119 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59607982 | 59611070 | 59607982 | ID=Msa0611410;Name=Msa0611410 |
| chr4_2 | mRNA | 59607982 | 59611070 | 59607982 | ID=Msa0611410-mRNA-1;Parent=Msa0611410;Name=Msa0611410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|284 |
| chr4_2 | exon | 59607982 | 59608122 | 59607982 | ID=Msa0611410-mRNA-1:exon:15836;Parent=Msa0611410-mRNA-1 |
| chr4_2 | exon | 59609114 | 59609290 | 59609114 | ID=Msa0611410-mRNA-1:exon:15837;Parent=Msa0611410-mRNA-1 |
| chr4_2 | exon | 59609391 | 59609673 | 59609391 | ID=Msa0611410-mRNA-1:exon:15838;Parent=Msa0611410-mRNA-1 |
| chr4_2 | exon | 59610731 | 59610834 | 59610731 | ID=Msa0611410-mRNA-1:exon:15839;Parent=Msa0611410-mRNA-1 |
| chr4_2 | exon | 59610921 | 59611070 | 59610921 | ID=Msa0611410-mRNA-1:exon:15840;Parent=Msa0611410-mRNA-1 |
| chr4_2 | CDS | 59607982 | 59608122 | 59607982 | ID=Msa0611410-mRNA-1:cds;Parent=Msa0611410-mRNA-1 |
| chr4_2 | CDS | 59609114 | 59609290 | 59609114 | ID=Msa0611410-mRNA-1:cds;Parent=Msa0611410-mRNA-1 |
| chr4_2 | CDS | 59609391 | 59609673 | 59609391 | ID=Msa0611410-mRNA-1:cds;Parent=Msa0611410-mRNA-1 |
| chr4_2 | CDS | 59610731 | 59610834 | 59610731 | ID=Msa0611410-mRNA-1:cds;Parent=Msa0611410-mRNA-1 |
| chr4_2 | CDS | 59610921 | 59611070 | 59610921 | ID=Msa0611410-mRNA-1:cds;Parent=Msa0611410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
