Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694120 | XP_003607966.1 | 91.901 | 284 | 23 | 0 | 1 | 284 | 1 | 284 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694120 | G7JL76 | 91.901 | 284 | 23 | 0 | 1 | 284 | 1 | 284 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611410 | Msa0694120 | 0.826215 | 3.065194e-54 | -8.615850e-47 |
| Msa0651840 | Msa0694120 | 0.954389 | 3.303396e-112 | -8.615850e-47 |
| Msa0689940 | Msa0694120 | -0.801448 | 8.960727e-49 | -8.615850e-47 |
| Msa0694120 | Msa1130820 | -0.805126 | 1.551672e-49 | -8.615850e-47 |
| Msa0694120 | Msa1406670 | -0.802138 | 6.467744e-49 | -8.615850e-47 |
| Msa0694120 | Msa1448870 | -0.801361 | 9.335722e-49 | -8.615850e-47 |
| Msa0415950 | Msa0694120 | -0.808888 | 2.482644e-50 | -8.615850e-47 |
| Msa0438480 | Msa0694120 | 0.812332 | 4.471254e-51 | -8.615850e-47 |
| Msa0480250 | Msa0694120 | -0.801532 | 8.613413e-49 | -8.615850e-47 |
| Msa0512360 | Msa0694120 | 0.823055 | 1.701716e-53 | -8.615850e-47 |
| Msa0578470 | Msa0694120 | 0.857043 | 2.135655e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694120 | MtrunA17_Chr4g0044801 | 91.901 | 284 | 23 | 0 | 1 | 284 | 1 | 284 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAACGACGAACAGATTT+TGG | 0.138569 | 4_4:-63395957 | None:intergenic |
| CGGCGACGCCGCTCCGTTTA+AGG | 0.175878 | 4_4:+63393039 | Msa0694120:CDS |
| GTCATATCTTAGTTCTTTAG+AGG | 0.270733 | 4_4:+63394073 | Msa0694120:CDS |
| TTTCAAGCTTGATCTTCTTC+TGG | 0.301755 | 4_4:-63394339 | None:intergenic |
| CTGTTCGTCGTTGCATTCTC+AGG | 0.311602 | 4_4:+63395964 | Msa0694120:CDS |
| AATTCATGGCCTTCATTCTC+TGG | 0.332105 | 4_4:-63395903 | None:intergenic |
| GCAGCATGCCCATGGCTAAA+AGG | 0.335052 | 4_4:+63395698 | Msa0694120:CDS |
| AAACCATGGCCATAGGTATT+AGG | 0.345657 | 4_4:-63394460 | None:intergenic |
| GCTGATTCTCATGTTGTTGC+AGG | 0.351005 | 4_4:+63394388 | Msa0694120:CDS |
| TATGAGCAGGTTGTCCCATT+TGG | 0.359262 | 4_4:+63395837 | Msa0694120:intron |
| GGAGGTGTTGTCGGCGGTGG+TGG | 0.380119 | 4_4:-63393017 | None:intergenic |
| TTTGGGACACGGAAACTCTC+TGG | 0.384612 | 4_4:-63395939 | None:intergenic |
| CATGGGCATGCTGCTTGAAC+TGG | 0.388086 | 4_4:-63395689 | None:intergenic |
| TCAGCTGCGCTCTCTAACAT+AGG | 0.395468 | 4_4:-63394370 | None:intergenic |
| CTGACCTGCCTATGCATACT+AGG | 0.400834 | 4_4:-63394197 | None:intergenic |
| TTATCTACCATTGCAGGTCC+TGG | 0.408276 | 4_4:-63394418 | None:intergenic |
| CAAGCTTTATCTACCATTGC+AGG | 0.411265 | 4_4:-63394424 | None:intergenic |
| GGTGTTGTCGGCGGTGGTGG+CGG | 0.431602 | 4_4:-63393014 | None:intergenic |
| GTTCTATACATTTACGTGGT+TGG | 0.433133 | 4_4:+63394120 | Msa0694120:CDS |
| TTTGGAAAGTTTCAGACTGC+TGG | 0.436663 | 4_4:+63395855 | Msa0694120:CDS |
| GCAGTCTGAAACTTTCCAAA+TGG | 0.443560 | 4_4:-63395852 | None:intergenic |
| GTTGTCGGCGGTGGTGGCGG+AGG | 0.447565 | 4_4:-63393011 | None:intergenic |
| GAGTGTGAAGTTACCTTAAA+CGG | 0.448421 | 4_4:-63393052 | None:intergenic |
| GGCGTCGCCGGAGGTGTTGT+CGG | 0.454876 | 4_4:-63393026 | None:intergenic |
| GAGTCGGATTGCAGTACTAT+AGG | 0.456476 | 4_4:+63394577 | Msa0694120:CDS |
| GGCGGTGGTGGCGGAGGAGT+CGG | 0.456643 | 4_4:-63393005 | None:intergenic |
| GCCGGAGGTGTTGTCGGCGG+TGG | 0.470695 | 4_4:-63393020 | None:intergenic |
| GTGGTTGGAGCTTTCACAGT+AGG | 0.478766 | 4_4:+63394135 | Msa0694120:CDS |
| ACCACCGCCGACAACACCTC+CGG | 0.486058 | 4_4:+63393019 | Msa0694120:CDS |
| TGGTTGGAGCTTTCACAGTA+GGG | 0.495797 | 4_4:+63394136 | Msa0694120:CDS |
| CTTAAACGGAGCGGCGTCGC+CGG | 0.497093 | 4_4:-63393038 | None:intergenic |
| GGAGTTGAGATAGCAATTCA+TGG | 0.498699 | 4_4:-63395917 | None:intergenic |
| CAGCTGCGCTCTCTAACATA+GGG | 0.501825 | 4_4:-63394369 | None:intergenic |
| CGGAGGGGAACGTCGGCGAA+TGG | 0.504995 | 4_4:-63392952 | None:intergenic |
| CTGAGAGAGCCTAATACCTA+TGG | 0.510196 | 4_4:+63394451 | Msa0694120:CDS |
| TACTCCTAGTATGCATAGGC+AGG | 0.513247 | 4_4:+63394193 | Msa0694120:CDS |
| TTGGGACACGGAAACTCTCT+GGG | 0.514398 | 4_4:-63395938 | None:intergenic |
| TACTGCAATCCGACTCTGCA+TGG | 0.515249 | 4_4:-63394570 | None:intergenic |
| GATCTGTCCAGCGTCTAGAC+TGG | 0.525092 | 4_4:-63394040 | None:intergenic |
| CAGTCTGAAACTTTCCAAAT+GGG | 0.540796 | 4_4:-63395851 | None:intergenic |
| TTGCTTCTCCACACAACTTG+CGG | 0.541525 | 4_4:-63394539 | None:intergenic |
| ACAACTTGCGGCTGACATGT+TGG | 0.543608 | 4_4:-63394527 | None:intergenic |
| CGAGTCAACTCGAGATCGGA+GGG | 0.545950 | 4_4:-63392968 | None:intergenic |
| CATGTCAGCCGCAAGTTGTG+TGG | 0.549493 | 4_4:+63394531 | Msa0694120:CDS |
| CCATGGTTTACTTTGCGACA+AGG | 0.556300 | 4_4:+63394474 | Msa0694120:CDS |
| AAACGGAGCGGCGTCGCCGG+AGG | 0.558507 | 4_4:-63393035 | None:intergenic |
| AATGGAGATTACGACGGAGA+GGG | 0.566235 | 4_4:-63392934 | None:intergenic |
| GGCAAATGCTGAACTCCCGC+TGG | 0.566895 | 4_4:-63394506 | None:intergenic |
| ACAAGGAGATTCATGCCAGC+GGG | 0.569007 | 4_4:+63394491 | Msa0694120:CDS |
| CAGTTCAAGCAGCATGCCCA+TGG | 0.569164 | 4_4:+63395690 | Msa0694120:CDS |
| GTTGTTGCAGGAAGTGAACC+AGG | 0.570158 | 4_4:+63394400 | Msa0694120:CDS |
| GGTCAGTGATCAGAACTTCA+AGG | 0.574496 | 4_4:+63395657 | Msa0694120:CDS |
| AATTCAACACCAGAGAATGA+AGG | 0.581399 | 4_4:+63395894 | Msa0694120:CDS |
| CAGTCTCTAGCTCTACAAGA+TGG | 0.583005 | 4_4:+63394313 | Msa0694120:intron |
| GGAGCGAGTCAACTCGAGAT+CGG | 0.583129 | 4_4:-63392972 | None:intergenic |
| GCAAAGTAAACCATGGCCAT+AGG | 0.584823 | 4_4:-63394467 | None:intergenic |
| AAAATACTCCTAGTATGCAT+AGG | 0.589165 | 4_4:+63394189 | Msa0694120:CDS |
| TGTTCGTCGTTGCATTCTCA+GGG | 0.590260 | 4_4:+63395965 | Msa0694120:CDS |
| CATCGTTCTATACATTTACG+TGG | 0.590322 | 4_4:+63394116 | Msa0694120:CDS |
| AAGTGAACCAGGACCTGCAA+TGG | 0.591458 | 4_4:+63394411 | Msa0694120:CDS |
| TAAATTCCACAGTACTTGAT+CGG | 0.594214 | 4_4:-63395752 | None:intergenic |
| GAGCCTAATACCTATGGCCA+TGG | 0.597384 | 4_4:+63394457 | Msa0694120:CDS |
| GCGAGTCAACTCGAGATCGG+AGG | 0.597744 | 4_4:-63392969 | None:intergenic |
| GACAAGGAGATTCATGCCAG+CGG | 0.608297 | 4_4:+63394490 | Msa0694120:CDS |
| GTCGTTGCATTCTCAGGGAT+AGG | 0.613936 | 4_4:+63395970 | Msa0694120:CDS |
| ATGTTCATTCCATGCAGAGT+CGG | 0.633709 | 4_4:+63394561 | Msa0694120:CDS |
| TCGAGATCGGAGGGGAACGT+CGG | 0.640659 | 4_4:-63392959 | None:intergenic |
| ACCAGGACCAGTCTAGACGC+TGG | 0.642505 | 4_4:+63394033 | Msa0694120:intron |
| TTGAAGACTGATGCAGCTGA+TGG | 0.643170 | 4_4:+63395721 | Msa0694120:CDS |
| GTCGCCGGAGGTGTTGTCGG+CGG | 0.654122 | 4_4:-63393023 | None:intergenic |
| CCTTGTCGCAAAGTAAACCA+TGG | 0.676849 | 4_4:-63394474 | None:intergenic |
| GAATGGAGATTACGACGGAG+AGG | 0.689455 | 4_4:-63392935 | None:intergenic |
| AGCTGCGCTCTCTAACATAG+GGG | 0.693425 | 4_4:-63394368 | None:intergenic |
| TGAAGTTACCTTAAACGGAG+CGG | 0.719373 | 4_4:-63393047 | None:intergenic |
| TCGGCGAATGGAGATTACGA+CGG | 0.740365 | 4_4:-63392940 | None:intergenic |
| GAGTCAACTCGAGATCGGAG+GGG | 0.744449 | 4_4:-63392967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTAATATCTAATAT+TGG | + | chr4_4:63393779-63393798 | Msa0694120:intron | 10.0% |
| !!! | ATCATTTTAGTAAATTGTTT+CGG | + | chr4_4:63393502-63393521 | Msa0694120:intron | 15.0% |
| !! | CTTTGAATATTAACATTTAA+AGG | + | chr4_4:63394973-63394992 | Msa0694120:intron | 15.0% |
| !!! | TTTTTTATTTGTCATATTAG+AGG | + | chr4_4:63395636-63395655 | Msa0694120:intron | 15.0% |
| !!! | TATGCTTCGATTTTTTTTTA+TGG | + | chr4_4:63393126-63393145 | Msa0694120:intron | 20.0% |
| !! | GTATAATTTATACATCTGTA+TGG | + | chr4_4:63393436-63393455 | Msa0694120:intron | 20.0% |
| !! | GAATGTAAAAAGAACAAATA+AGG | + | chr4_4:63393643-63393662 | Msa0694120:intron | 20.0% |
| !!! | TAAGGAAAATCATTTTGAAA+AGG | + | chr4_4:63393661-63393680 | Msa0694120:intron | 20.0% |
| !!! | TTTTTGATTGCTTGTAAATT+TGG | + | chr4_4:63393984-63394003 | Msa0694120:intron | 20.0% |
| !!! | TTAATTCTAAATTTTGTACC+AGG | + | chr4_4:63394016-63394035 | Msa0694120:intron | 20.0% |
| !!! | ATTTAAGTTTCTCTAAACAT+TGG | + | chr4_4:63394778-63394797 | Msa0694120:intron | 20.0% |
| !! | AATGTATGACATAAATTTGT+TGG | + | chr4_4:63395235-63395254 | Msa0694120:intron | 20.0% |
| !!! | CTGTATTTAAATGAGTTTTA+TGG | + | chr4_4:63395428-63395447 | Msa0694120:intron | 20.0% |
| !!! | AAATAGTTTAAAAGCATAGT+GGG | - | chr4_4:63395505-63395524 | None:intergenic | 20.0% |
| !!! | AAAATAGTTTAAAAGCATAG+TGG | - | chr4_4:63395506-63395525 | None:intergenic | 20.0% |
| !! | AATCTCAAGTAAATTTGAAT+GGG | + | chr4_4:63395790-63395809 | Msa0694120:intron | 20.0% |
| ! | AAAACATAAACTCTAAACCA+CGG | - | chr4_4:63393315-63393334 | None:intergenic | 25.0% |
| ! | CAGAGATATTGAGATATTAT+AGG | - | chr4_4:63393858-63393877 | None:intergenic | 25.0% |
| ! | CTATAATATCTCAATATCTC+TGG | + | chr4_4:63393856-63393875 | Msa0694120:intron | 25.0% |
| ! | ATTGTCAATTTCAAACTCTT+GGG | - | chr4_4:63393936-63393955 | None:intergenic | 25.0% |
| ! | TATTGTCAATTTCAAACTCT+TGG | - | chr4_4:63393937-63393956 | None:intergenic | 25.0% |
| !!! | ATAATAAAGAGTGTCTATCA+TGG | + | chr4_4:63393954-63393973 | Msa0694120:intron | 25.0% |
| !!! | TAATAAAGAGTGTCTATCAT+GGG | + | chr4_4:63393955-63393974 | Msa0694120:intron | 25.0% |
| ! | ATTATCACACATAAACACAA+TGG | - | chr4_4:63394246-63394265 | None:intergenic | 25.0% |
| !! | AAAAAGGCTTTGATTATACT+GGG | - | chr4_4:63394275-63394294 | None:intergenic | 25.0% |
| !! | TAAAAAGGCTTTGATTATAC+TGG | - | chr4_4:63394276-63394295 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAGGGATAAAA+AGG | - | chr4_4:63394291-63394310 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTTTTTGCATGT+TGG | + | chr4_4:63394610-63394629 | Msa0694120:intron | 25.0% |
| !! | TATTTAGTTTAAATGACCAC+TGG | + | chr4_4:63394814-63394833 | Msa0694120:intron | 25.0% |
| !!! | CCAAGAGAGTTTTTATTTAT+GGG | + | chr4_4:63395035-63395054 | Msa0694120:intron | 25.0% |
| ! | GCCTTTATAGATTTACATTT+GGG | + | chr4_4:63395076-63395095 | Msa0694120:intron | 25.0% |
| ! | ACCCAAATGTAAATCTATAA+AGG | - | chr4_4:63395080-63395099 | None:intergenic | 25.0% |
| ! | TTTATGGTCCTTTAAATAAG+TGG | + | chr4_4:63395444-63395463 | Msa0694120:intron | 25.0% |
| ! | CTTGAAAACCACTTATTTAA+AGG | - | chr4_4:63395455-63395474 | None:intergenic | 25.0% |
| !! | AATAGTTTAAAAGCATAGTG+GGG | - | chr4_4:63395504-63395523 | None:intergenic | 25.0% |
| ! | AATTTACTTGAGATTGTTTC+AGG | - | chr4_4:63395785-63395804 | None:intergenic | 25.0% |
| ! | CAATCTCAAGTAAATTTGAA+TGG | + | chr4_4:63395789-63395808 | Msa0694120:intron | 25.0% |
| ! | GAAAAAATTGCGAGTTTTTG+TGG | + | chr4_4:63393150-63393169 | Msa0694120:intron | 30.0% |
| !! | TTATATCCATGAGCTTGTTT+TGG | + | chr4_4:63393541-63393560 | Msa0694120:intron | 30.0% |
| CTCTGATTGTTAACAGAAAA+TGG | - | chr4_4:63393589-63393608 | None:intergenic | 30.0% | |
| TTGTCAATTTCAAACTCTTG+GGG | - | chr4_4:63393935-63393954 | None:intergenic | 30.0% | |
| ! | GTCATATCTTAGTTCTTTAG+AGG | + | chr4_4:63394073-63394092 | Msa0694120:CDS | 30.0% |
| AAAATACTCCTAGTATGCAT+AGG | + | chr4_4:63394189-63394208 | Msa0694120:CDS | 30.0% | |
| GAGACTGAAAGGAAAAAAAA+GGG | - | chr4_4:63394300-63394319 | None:intergenic | 30.0% | |
| AGAGACTGAAAGGAAAAAAA+AGG | - | chr4_4:63394301-63394320 | None:intergenic | 30.0% | |
| AAAACAACATCTTGTGTACA+AGG | - | chr4_4:63394688-63394707 | None:intergenic | 30.0% | |
| ACTATATGCATATACCTTGA+GGG | - | chr4_4:63394720-63394739 | None:intergenic | 30.0% | |
| TAACTGATATGCAATGTCTA+TGG | - | chr4_4:63394851-63394870 | None:intergenic | 30.0% | |
| !! | GCCAAGAGAGTTTTTATTTA+TGG | + | chr4_4:63395034-63395053 | Msa0694120:intron | 30.0% |
| CCCATAAATAAAAACTCTCT+TGG | - | chr4_4:63395038-63395057 | None:intergenic | 30.0% | |
| GGCCTTTATAGATTTACATT+TGG | + | chr4_4:63395075-63395094 | Msa0694120:intron | 30.0% | |
| ! | TTCTTTTTATGCTTTGACAG+TGG | + | chr4_4:63395100-63395119 | Msa0694120:intron | 30.0% |
| ! | TCTTTTTATGCTTTGACAGT+GGG | + | chr4_4:63395101-63395120 | Msa0694120:intron | 30.0% |
| TAGTTATGTATAAAGCCTTG+TGG | - | chr4_4:63395157-63395176 | None:intergenic | 30.0% | |
| TTGATTCACTTCTCATAGAA+AGG | - | chr4_4:63395287-63395306 | None:intergenic | 30.0% | |
| CTAATAGTTCAGTTTACTTG+AGG | - | chr4_4:63395312-63395331 | None:intergenic | 30.0% | |
| AATATCACAACCTTATTCCT+GGG | - | chr4_4:63395603-63395622 | None:intergenic | 30.0% | |
| AAATATCACAACCTTATTCC+TGG | - | chr4_4:63395604-63395623 | None:intergenic | 30.0% | |
| TAAATTCCACAGTACTTGAT+CGG | - | chr4_4:63395755-63395774 | None:intergenic | 30.0% | |
| GAGTGTGAAGTTACCTTAAA+CGG | - | chr4_4:63393055-63393074 | None:intergenic | 35.0% | |
| ! | TAGAAGATCTGAAACTGCTA+AGG | + | chr4_4:63393380-63393399 | Msa0694120:intron | 35.0% |
| TAAGGATTGAGGTTTAACTG+TGG | + | chr4_4:63393398-63393417 | Msa0694120:intron | 35.0% | |
| TCAAATCCAAAACAAGCTCA+TGG | - | chr4_4:63393550-63393569 | None:intergenic | 35.0% | |
| TTCATGACTCAACTCATGAA+AGG | + | chr4_4:63393621-63393640 | Msa0694120:intron | 35.0% | |
| AAGAGATTTCGTACCATTGT+TGG | + | chr4_4:63393743-63393762 | Msa0694120:intron | 35.0% | |
| CATCGTTCTATACATTTACG+TGG | + | chr4_4:63394116-63394135 | Msa0694120:CDS | 35.0% | |
| GTTCTATACATTTACGTGGT+TGG | + | chr4_4:63394120-63394139 | Msa0694120:CDS | 35.0% | |
| TTTCAAGCTTGATCTTCTTC+TGG | - | chr4_4:63394342-63394361 | None:intergenic | 35.0% | |
| GACTATATGCATATACCTTG+AGG | - | chr4_4:63394721-63394740 | None:intergenic | 35.0% | |
| ! | TTTCCTGCAGTAAAAGCTTT+TGG | + | chr4_4:63394880-63394899 | Msa0694120:intron | 35.0% |
| ! | ATTCCAAAAGCTTTTACTGC+AGG | - | chr4_4:63394886-63394905 | None:intergenic | 35.0% |
| TGTTGTAATGTATGCTGCAA+TGG | + | chr4_4:63394917-63394936 | Msa0694120:intron | 35.0% | |
| !! | ATGTATGCTGCAATGGATTA+AGG | + | chr4_4:63394924-63394943 | Msa0694120:intron | 35.0% |
| !! | TGTATGCTGCAATGGATTAA+GGG | + | chr4_4:63394925-63394944 | Msa0694120:intron | 35.0% |
| ! | GGATTAAGGGGGTTAAATTT+TGG | + | chr4_4:63394938-63394957 | Msa0694120:intron | 35.0% |
| !!! | TGACAGTGGGTTTTTTAATG+TGG | + | chr4_4:63395114-63395133 | Msa0694120:intron | 35.0% |
| !!! | AGTGGGTTTTTTAATGTGGA+TGG | + | chr4_4:63395118-63395137 | Msa0694120:intron | 35.0% |
| CAATTAGAGCAAGAGAACAA+AGG | - | chr4_4:63395194-63395213 | None:intergenic | 35.0% | |
| ACTGAACTATTAGATCATCC+AGG | + | chr4_4:63395319-63395338 | Msa0694120:intron | 35.0% | |
| CTGAACTATTAGATCATCCA+GGG | + | chr4_4:63395320-63395339 | Msa0694120:intron | 35.0% | |
| !!! | ATTGTGATAGTTTTTTGCCC+AGG | + | chr4_4:63395583-63395602 | Msa0694120:intron | 35.0% |
| !!! | TAGTTTTTTGCCCAGGAATA+AGG | + | chr4_4:63395590-63395609 | Msa0694120:intron | 35.0% |
| ! | TTCATGTTCCTTTTATGAGC+AGG | + | chr4_4:63395824-63395843 | Msa0694120:intron | 35.0% |
| ! | CAGTCTGAAACTTTCCAAAT+GGG | - | chr4_4:63395854-63395873 | None:intergenic | 35.0% |
| AATTCAACACCAGAGAATGA+AGG | + | chr4_4:63395894-63395913 | Msa0694120:CDS | 35.0% | |
| TGAAGTTACCTTAAACGGAG+CGG | - | chr4_4:63393050-63393069 | None:intergenic | 40.0% | |
| GAACAACAGTCTCATTCACA+CGG | - | chr4_4:63393185-63393204 | None:intergenic | 40.0% | |
| TCTCGAAATTGTGCTTTGCA+TGG | + | chr4_4:63393278-63393297 | Msa0694120:intron | 40.0% | |
| ! | TCTGAAACTGCTAAGGATTG+AGG | + | chr4_4:63393387-63393406 | Msa0694120:intron | 40.0% |
| ACACAATGGAGACTCTAAAC+TGG | - | chr4_4:63394232-63394251 | None:intergenic | 40.0% | |
| TTGTAGAGCTAGAGACTGAA+AGG | - | chr4_4:63394311-63394330 | None:intergenic | 40.0% | |
| ! | CAAGCTTTATCTACCATTGC+AGG | - | chr4_4:63394427-63394446 | None:intergenic | 40.0% |
| AAACCATGGCCATAGGTATT+AGG | - | chr4_4:63394463-63394482 | None:intergenic | 40.0% | |
| ATGTTCATTCCATGCAGAGT+CGG | + | chr4_4:63394561-63394580 | Msa0694120:CDS | 40.0% | |
| TACAAGGTGCAAGAAAAGAC+AGG | - | chr4_4:63394672-63394691 | None:intergenic | 40.0% | |
| TATGGCATTGTTTAAGCCAG+TGG | - | chr4_4:63394833-63394852 | None:intergenic | 40.0% | |
| !! | GTATGCTGCAATGGATTAAG+GGG | + | chr4_4:63394926-63394945 | Msa0694120:intron | 40.0% |
| !! | TATGCTGCAATGGATTAAGG+GGG | + | chr4_4:63394927-63394946 | Msa0694120:intron | 40.0% |
| !! | GGTTTATTGACTCTTCCACA+AGG | + | chr4_4:63395139-63395158 | Msa0694120:intron | 40.0% |
| ! | TTTTGCAAGACTATTCCACG+TGG | + | chr4_4:63395523-63395542 | Msa0694120:intron | 40.0% |
| TTTGCAAGACTATTCCACGT+GGG | + | chr4_4:63395524-63395543 | Msa0694120:intron | 40.0% | |
| ! | GTCTTCAACCTTTTAGCCAT+GGG | - | chr4_4:63395709-63395728 | None:intergenic | 40.0% |
| ! | AGTCTTCAACCTTTTAGCCA+TGG | - | chr4_4:63395710-63395729 | None:intergenic | 40.0% |
| ! | GCAGTCTGAAACTTTCCAAA+TGG | - | chr4_4:63395855-63395874 | None:intergenic | 40.0% |
| TTTGGAAAGTTTCAGACTGC+TGG | + | chr4_4:63395855-63395874 | Msa0694120:CDS | 40.0% | |
| AATTCATGGCCTTCATTCTC+TGG | - | chr4_4:63395906-63395925 | None:intergenic | 40.0% | |
| GGAGTTGAGATAGCAATTCA+TGG | - | chr4_4:63395920-63395939 | None:intergenic | 40.0% | |
| ! | TGCAACGACGAACAGATTTT+GGG | - | chr4_4:63395959-63395978 | None:intergenic | 40.0% |
| ! | ATGCAACGACGAACAGATTT+TGG | - | chr4_4:63395960-63395979 | None:intergenic | 40.0% |
| AATGGAGATTACGACGGAGA+GGG | - | chr4_4:63392937-63392956 | None:intergenic | 45.0% | |
| TGTTCCTGTAAACAGCTGCT+TGG | + | chr4_4:63393200-63393219 | Msa0694120:intron | 45.0% | |
| GTTCCTGTAAACAGCTGCTT+GGG | + | chr4_4:63393201-63393220 | Msa0694120:intron | 45.0% | |
| AAACCCAAGCAGCTGTTTAC+AGG | - | chr4_4:63393207-63393226 | None:intergenic | 45.0% | |
| CCAAGACTATGAGCCAACAA+TGG | - | chr4_4:63393759-63393778 | None:intergenic | 45.0% | |
| !! | CCATTGTTGGCTCATAGTCT+TGG | + | chr4_4:63393756-63393775 | Msa0694120:intron | 45.0% |
| TGGTTGGAGCTTTCACAGTA+GGG | + | chr4_4:63394136-63394155 | Msa0694120:CDS | 45.0% | |
| TACTCCTAGTATGCATAGGC+AGG | + | chr4_4:63394193-63394212 | Msa0694120:CDS | 45.0% | |
| !! | CAGTCTCTAGCTCTACAAGA+TGG | + | chr4_4:63394313-63394332 | Msa0694120:intron | 45.0% |
| ! | GCTGATTCTCATGTTGTTGC+AGG | + | chr4_4:63394388-63394407 | Msa0694120:CDS | 45.0% |
| TTATCTACCATTGCAGGTCC+TGG | - | chr4_4:63394421-63394440 | None:intergenic | 45.0% | |
| CTGAGAGAGCCTAATACCTA+TGG | + | chr4_4:63394451-63394470 | Msa0694120:CDS | 45.0% | |
| GCAAAGTAAACCATGGCCAT+AGG | - | chr4_4:63394470-63394489 | None:intergenic | 45.0% | |
| CCTTGTCGCAAAGTAAACCA+TGG | - | chr4_4:63394477-63394496 | None:intergenic | 45.0% | |
| CCATGGTTTACTTTGCGACA+AGG | + | chr4_4:63394474-63394493 | Msa0694120:CDS | 45.0% | |
| TTGCTTCTCCACACAACTTG+CGG | - | chr4_4:63394542-63394561 | None:intergenic | 45.0% | |
| GAGTCGGATTGCAGTACTAT+AGG | + | chr4_4:63394577-63394596 | Msa0694120:CDS | 45.0% | |
| ! | GTTTTTCATGCTCACCCTCA+AGG | + | chr4_4:63394703-63394722 | Msa0694120:intron | 45.0% |
| TGGGACTAGAGTATGATGCA+TGG | + | chr4_4:63395054-63395073 | Msa0694120:intron | 45.0% | |
| GAACAAAGGCTCAGGTATCA+TGG | - | chr4_4:63395180-63395199 | None:intergenic | 45.0% | |
| TTAGATCATCCAGGGACAGA+AGG | + | chr4_4:63395328-63395347 | Msa0694120:intron | 45.0% | |
| AAGATTGTTCCTTCTGTCCC+TGG | - | chr4_4:63395340-63395359 | None:intergenic | 45.0% | |
| TAGAATTAGTATCGCCCACG+TGG | - | chr4_4:63395541-63395560 | None:intergenic | 45.0% | |
| GGTCAGTGATCAGAACTTCA+AGG | + | chr4_4:63395657-63395676 | Msa0694120:CDS | 45.0% | |
| TTGAAGACTGATGCAGCTGA+TGG | + | chr4_4:63395721-63395740 | Msa0694120:CDS | 45.0% | |
| TGGGACAACCTGCTCATAAA+AGG | - | chr4_4:63395835-63395854 | None:intergenic | 45.0% | |
| TATGAGCAGGTTGTCCCATT+TGG | + | chr4_4:63395837-63395856 | Msa0694120:intron | 45.0% | |
| !!! | GACGAACAGATTTTGGGACA+CGG | - | chr4_4:63395953-63395972 | None:intergenic | 45.0% |
| TGTTCGTCGTTGCATTCTCA+GGG | + | chr4_4:63395965-63395984 | Msa0694120:CDS | 45.0% | |
| GAATGGAGATTACGACGGAG+AGG | - | chr4_4:63392938-63392957 | None:intergenic | 50.0% | |
| TCGGCGAATGGAGATTACGA+CGG | - | chr4_4:63392943-63392962 | None:intergenic | 50.0% | |
| GGAGGAGTCGGAAAAAGAAG+CGG | - | chr4_4:63392996-63393015 | None:intergenic | 50.0% | |
| AACAGTCTCATTCACACGGC+TGG | - | chr4_4:63393181-63393200 | None:intergenic | 50.0% | |
| GTGGTTGGAGCTTTCACAGT+AGG | + | chr4_4:63394135-63394154 | Msa0694120:CDS | 50.0% | |
| CTGACCTGCCTATGCATACT+AGG | - | chr4_4:63394200-63394219 | None:intergenic | 50.0% | |
| AGCTGCGCTCTCTAACATAG+GGG | - | chr4_4:63394371-63394390 | None:intergenic | 50.0% | |
| CAGCTGCGCTCTCTAACATA+GGG | - | chr4_4:63394372-63394391 | None:intergenic | 50.0% | |
| TCAGCTGCGCTCTCTAACAT+AGG | - | chr4_4:63394373-63394392 | None:intergenic | 50.0% | |
| GTTGTTGCAGGAAGTGAACC+AGG | + | chr4_4:63394400-63394419 | Msa0694120:CDS | 50.0% | |
| AAGTGAACCAGGACCTGCAA+TGG | + | chr4_4:63394411-63394430 | Msa0694120:CDS | 50.0% | |
| GAGCCTAATACCTATGGCCA+TGG | + | chr4_4:63394457-63394476 | Msa0694120:CDS | 50.0% | |
| GACAAGGAGATTCATGCCAG+CGG | + | chr4_4:63394490-63394509 | Msa0694120:CDS | 50.0% | |
| ACAAGGAGATTCATGCCAGC+GGG | + | chr4_4:63394491-63394510 | Msa0694120:CDS | 50.0% | |
| ACAACTTGCGGCTGACATGT+TGG | - | chr4_4:63394530-63394549 | None:intergenic | 50.0% | |
| TACTGCAATCCGACTCTGCA+TGG | - | chr4_4:63394573-63394592 | None:intergenic | 50.0% | |
| CCAGTGTACGTCAATCAGCA+GGG | + | chr4_4:63395009-63395028 | Msa0694120:intron | 50.0% | |
| CAGTGTACGTCAATCAGCAG+GGG | + | chr4_4:63395010-63395029 | Msa0694120:intron | 50.0% | |
| GAGCAAGAGAACAAAGGCTC+AGG | - | chr4_4:63395188-63395207 | None:intergenic | 50.0% | |
| !! | CAAGCACCGATCAAGTACTG+TGG | + | chr4_4:63395746-63395765 | Msa0694120:intron | 50.0% |
| TTGGGACACGGAAACTCTCT+GGG | - | chr4_4:63395941-63395960 | None:intergenic | 50.0% | |
| ! | TTTGGGACACGGAAACTCTC+TGG | - | chr4_4:63395942-63395961 | None:intergenic | 50.0% |
| CTGTTCGTCGTTGCATTCTC+AGG | + | chr4_4:63395964-63395983 | Msa0694120:CDS | 50.0% | |
| GTCGTTGCATTCTCAGGGAT+AGG | + | chr4_4:63395970-63395989 | Msa0694120:CDS | 50.0% | |
| GAGTCAACTCGAGATCGGAG+GGG | - | chr4_4:63392970-63392989 | None:intergenic | 55.0% | |
| CGAGTCAACTCGAGATCGGA+GGG | - | chr4_4:63392971-63392990 | None:intergenic | 55.0% | |
| GGAGCGAGTCAACTCGAGAT+CGG | - | chr4_4:63392975-63392994 | None:intergenic | 55.0% | |
| GCATGGCGATTAAGCTTCCG+TGG | + | chr4_4:63393295-63393314 | Msa0694120:intron | 55.0% | |
| GATCTGTCCAGCGTCTAGAC+TGG | - | chr4_4:63394043-63394062 | None:intergenic | 55.0% | |
| CATGTCAGCCGCAAGTTGTG+TGG | + | chr4_4:63394531-63394550 | Msa0694120:CDS | 55.0% | |
| GCTGATTGACGTACACTGGC+TGG | - | chr4_4:63395008-63395027 | None:intergenic | 55.0% | |
| GCCAGTGTACGTCAATCAGC+AGG | + | chr4_4:63395008-63395027 | Msa0694120:intron | 55.0% | |
| ! | CCCTGCTGATTGACGTACAC+TGG | - | chr4_4:63395012-63395031 | None:intergenic | 55.0% |
| ! | CATGGGCATGCTGCTTGAAC+TGG | - | chr4_4:63395692-63395711 | None:intergenic | 55.0% |
| CAGTTCAAGCAGCATGCCCA+TGG | + | chr4_4:63395690-63395709 | Msa0694120:CDS | 55.0% | |
| GCAGCATGCCCATGGCTAAA+AGG | + | chr4_4:63395698-63395717 | Msa0694120:CDS | 55.0% | |
| TCGAGATCGGAGGGGAACGT+CGG | - | chr4_4:63392962-63392981 | None:intergenic | 60.0% | |
| GCGAGTCAACTCGAGATCGG+AGG | - | chr4_4:63392972-63392991 | None:intergenic | 60.0% | |
| ACCAGGACCAGTCTAGACGC+TGG | + | chr4_4:63394033-63394052 | Msa0694120:intron | 60.0% | |
| ! | TCCAGCGTCTAGACTGGTCC+TGG | - | chr4_4:63394037-63394056 | None:intergenic | 60.0% |
| GGCAAATGCTGAACTCCCGC+TGG | - | chr4_4:63394509-63394528 | None:intergenic | 60.0% | |
| ACCACCGCCGACAACACCTC+CGG | + | chr4_4:63393019-63393038 | Msa0694120:CDS | 65.0% | |
| CTTAAACGGAGCGGCGTCGC+CGG | - | chr4_4:63393041-63393060 | None:intergenic | 65.0% | |
| CGGAGGGGAACGTCGGCGAA+TGG | - | chr4_4:63392955-63392974 | None:intergenic | 70.0% | |
| ! | GGTGTTGTCGGCGGTGGTGG+CGG | - | chr4_4:63393017-63393036 | None:intergenic | 70.0% |
| !! | GGAGGTGTTGTCGGCGGTGG+TGG | - | chr4_4:63393020-63393039 | None:intergenic | 70.0% |
| !! | GTCGCCGGAGGTGTTGTCGG+CGG | - | chr4_4:63393026-63393045 | None:intergenic | 70.0% |
| !! | GGCGTCGCCGGAGGTGTTGT+CGG | - | chr4_4:63393029-63393048 | None:intergenic | 70.0% |
| CGGCGACGCCGCTCCGTTTA+AGG | + | chr4_4:63393039-63393058 | Msa0694120:CDS | 70.0% | |
| !! | GGCGGTGGTGGCGGAGGAGT+CGG | - | chr4_4:63393008-63393027 | None:intergenic | 75.0% |
| !! | GTTGTCGGCGGTGGTGGCGG+AGG | - | chr4_4:63393014-63393033 | None:intergenic | 75.0% |
| !! | GCCGGAGGTGTTGTCGGCGG+TGG | - | chr4_4:63393023-63393042 | None:intergenic | 75.0% |
| AAACGGAGCGGCGTCGCCGG+AGG | - | chr4_4:63393038-63393057 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 63392920 | 63395995 | 63392920 | ID=Msa0694120;Name=Msa0694120 |
| chr4_4 | mRNA | 63392920 | 63395995 | 63392920 | ID=Msa0694120-mRNA-1;Parent=Msa0694120;Name=Msa0694120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|284 |
| chr4_4 | exon | 63392920 | 63393060 | 63392920 | ID=Msa0694120-mRNA-1:exon:17849;Parent=Msa0694120-mRNA-1 |
| chr4_4 | exon | 63394038 | 63394214 | 63394038 | ID=Msa0694120-mRNA-1:exon:17850;Parent=Msa0694120-mRNA-1 |
| chr4_4 | exon | 63394316 | 63394598 | 63394316 | ID=Msa0694120-mRNA-1:exon:17851;Parent=Msa0694120-mRNA-1 |
| chr4_4 | exon | 63395656 | 63395759 | 63395656 | ID=Msa0694120-mRNA-1:exon:17852;Parent=Msa0694120-mRNA-1 |
| chr4_4 | exon | 63395846 | 63395995 | 63395846 | ID=Msa0694120-mRNA-1:exon:17853;Parent=Msa0694120-mRNA-1 |
| chr4_4 | CDS | 63392920 | 63393060 | 63392920 | ID=Msa0694120-mRNA-1:cds;Parent=Msa0694120-mRNA-1 |
| chr4_4 | CDS | 63394038 | 63394214 | 63394038 | ID=Msa0694120-mRNA-1:cds;Parent=Msa0694120-mRNA-1 |
| chr4_4 | CDS | 63394316 | 63394598 | 63394316 | ID=Msa0694120-mRNA-1:cds;Parent=Msa0694120-mRNA-1 |
| chr4_4 | CDS | 63395656 | 63395759 | 63395656 | ID=Msa0694120-mRNA-1:cds;Parent=Msa0694120-mRNA-1 |
| chr4_4 | CDS | 63395846 | 63395995 | 63395846 | ID=Msa0694120-mRNA-1:cds;Parent=Msa0694120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
