Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651840 | XP_003607966.1 | 92.254 | 284 | 22 | 0 | 1 | 284 | 1 | 284 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651840 | G7JL76 | 92.254 | 284 | 22 | 0 | 1 | 284 | 1 | 284 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611410 | Msa0651840 | 0.842978 | 1.858388e-58 | -8.615850e-47 |
| Msa0651840 | Msa0694120 | 0.954389 | 3.303396e-112 | -8.615850e-47 |
| Msa0651840 | Msa1130820 | -0.803836 | 2.882930e-49 | -8.615850e-47 |
| Msa0483770 | Msa0651840 | 0.800952 | 1.132280e-48 | -8.615850e-47 |
| Msa0512360 | Msa0651840 | 0.807680 | 4.489754e-50 | -8.615850e-47 |
| Msa0578470 | Msa0651840 | 0.895772 | 6.975187e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651840 | MtrunA17_Chr4g0044801 | 92.254 | 284 | 22 | 0 | 1 | 284 | 1 | 284 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAACGACGAACAGATTT+TGG | 0.138569 | 4_3:-59356471 | None:intergenic |
| CGGCGACGCCGCTCCGTTTA+AGG | 0.175878 | 4_3:+59353555 | Msa0651840:CDS |
| GTCATATCTTAGTTCTTTAG+AGG | 0.270733 | 4_3:+59354589 | Msa0651840:CDS |
| TTTCAAGCTTGATCTTCTTC+TGG | 0.301755 | 4_3:-59354855 | None:intergenic |
| CTGTTCGTCGTTGCATTCTC+AGG | 0.311602 | 4_3:+59356478 | Msa0651840:CDS |
| AATTCATGGCCTTCATTCTC+TGG | 0.332105 | 4_3:-59356417 | None:intergenic |
| GCAGCATGCCCATGGCTAAA+AGG | 0.335052 | 4_3:+59356212 | Msa0651840:CDS |
| GCTGATTCTCATGTTGTTGC+AGG | 0.351005 | 4_3:+59354904 | Msa0651840:CDS |
| AAACCATGGTCATAGGTATT+AGG | 0.356119 | 4_3:-59354976 | None:intergenic |
| TATGAGCAGGTTGTCCCATT+TGG | 0.359262 | 4_3:+59356351 | Msa0651840:intron |
| GGAGGTGTTGTCGGCGGTGG+TGG | 0.380119 | 4_3:-59353533 | None:intergenic |
| TTTGGGACACGGAAACTCTC+TGG | 0.384612 | 4_3:-59356453 | None:intergenic |
| CATGGGCATGCTGCTTGAAC+TGG | 0.388086 | 4_3:-59356203 | None:intergenic |
| TCAGCTGCGCTCTCTAACAT+AGG | 0.395468 | 4_3:-59354886 | None:intergenic |
| CTGACCTGCCTATGCATACT+AGG | 0.400834 | 4_3:-59354713 | None:intergenic |
| TTATCTACCATTGCAGGTCC+TGG | 0.408276 | 4_3:-59354934 | None:intergenic |
| CAAGCTTTATCTACCATTGC+AGG | 0.411265 | 4_3:-59354940 | None:intergenic |
| GCAAAGTAAACCATGGTCAT+AGG | 0.430258 | 4_3:-59354983 | None:intergenic |
| GGTGTTGTCGGCGGTGGTGG+CGG | 0.431602 | 4_3:-59353530 | None:intergenic |
| GTTCTATACATTTACGTGGT+TGG | 0.433133 | 4_3:+59354636 | Msa0651840:CDS |
| TTTGGAAAGTTTCAGACTGC+TGG | 0.436663 | 4_3:+59356369 | Msa0651840:CDS |
| GCAGTCTGAAACTTTCCAAA+TGG | 0.443560 | 4_3:-59356366 | None:intergenic |
| GTTGTCGGCGGTGGTGGCGG+AGG | 0.447565 | 4_3:-59353527 | None:intergenic |
| GAGTGTGAAGTTACCTTAAA+CGG | 0.448421 | 4_3:-59353568 | None:intergenic |
| GGCGTCGCCGGAGGTGTTGT+CGG | 0.454876 | 4_3:-59353542 | None:intergenic |
| GAGTCGGATTGCAGTACTAT+AGG | 0.456476 | 4_3:+59355093 | Msa0651840:CDS |
| GGCGGTGGTGGCGGAGGAGT+CGG | 0.456643 | 4_3:-59353521 | None:intergenic |
| GCCGGAGGTGTTGTCGGCGG+TGG | 0.470695 | 4_3:-59353536 | None:intergenic |
| GTGGTTGGAGCTTTCACAGT+AGG | 0.478766 | 4_3:+59354651 | Msa0651840:CDS |
| ACCACCGCCGACAACACCTC+CGG | 0.486058 | 4_3:+59353535 | Msa0651840:CDS |
| TGGTTGGAGCTTTCACAGTA+GGG | 0.495797 | 4_3:+59354652 | Msa0651840:CDS |
| CTTAAACGGAGCGGCGTCGC+CGG | 0.497093 | 4_3:-59353554 | None:intergenic |
| GGAGTTGAGATAGCAATTCA+TGG | 0.498699 | 4_3:-59356431 | None:intergenic |
| CAGCTGCGCTCTCTAACATA+GGG | 0.501825 | 4_3:-59354885 | None:intergenic |
| CGGAGGGGAACGTCGGCGAA+TGG | 0.504995 | 4_3:-59353468 | None:intergenic |
| TACTCCTAGTATGCATAGGC+AGG | 0.513247 | 4_3:+59354709 | Msa0651840:CDS |
| TTGGGACACGGAAACTCTCT+GGG | 0.514398 | 4_3:-59356452 | None:intergenic |
| TACTGCAATCCGACTCTGCA+TGG | 0.515249 | 4_3:-59355086 | None:intergenic |
| GATCTGTCCAGCGTCTAGAC+TGG | 0.525092 | 4_3:-59354556 | None:intergenic |
| CAGTCTGAAACTTTCCAAAT+GGG | 0.540796 | 4_3:-59356365 | None:intergenic |
| TTGCTTCTCCACACAACTTG+CGG | 0.541525 | 4_3:-59355055 | None:intergenic |
| ACAACTTGCGGCTGACATGT+TGG | 0.543608 | 4_3:-59355043 | None:intergenic |
| CGAGTCAACTCGAGATCGGA+GGG | 0.545950 | 4_3:-59353484 | None:intergenic |
| CATGTCAGCCGCAAGTTGTG+TGG | 0.549493 | 4_3:+59355047 | Msa0651840:CDS |
| AAACGGAGCGGCGTCGCCGG+AGG | 0.558507 | 4_3:-59353551 | None:intergenic |
| AATGGAGATTACGACGGAGA+GGG | 0.566235 | 4_3:-59353450 | None:intergenic |
| GGCAAATGCTGAACTCCCGC+TGG | 0.566895 | 4_3:-59355022 | None:intergenic |
| CCATGGTTTACTTTGCGACA+AGG | 0.568719 | 4_3:+59354990 | Msa0651840:CDS |
| ACAAGGAGATTCATGCCAGC+GGG | 0.569007 | 4_3:+59355007 | Msa0651840:CDS |
| CAGTTCAAGCAGCATGCCCA+TGG | 0.569164 | 4_3:+59356204 | Msa0651840:CDS |
| GTTGTTGCAGGAAGTGAACC+AGG | 0.570158 | 4_3:+59354916 | Msa0651840:CDS |
| GGTCAGTGATCAGAACTTCA+AGG | 0.574496 | 4_3:+59356171 | Msa0651840:CDS |
| AATTCAACACCAGAGAATGA+AGG | 0.581399 | 4_3:+59356408 | Msa0651840:CDS |
| CAGTCTCTAGCTCTACAAGA+TGG | 0.583005 | 4_3:+59354829 | Msa0651840:intron |
| GGAGCGAGTCAACTCGAGAT+CGG | 0.583129 | 4_3:-59353488 | None:intergenic |
| AAAATACTCCTAGTATGCAT+AGG | 0.589165 | 4_3:+59354705 | Msa0651840:CDS |
| TGTTCGTCGTTGCATTCTCA+GGG | 0.590260 | 4_3:+59356479 | Msa0651840:CDS |
| CATCGTTCTATACATTTACG+TGG | 0.590322 | 4_3:+59354632 | Msa0651840:CDS |
| AAGTGAACCAGGACCTGCAA+TGG | 0.591458 | 4_3:+59354927 | Msa0651840:CDS |
| TAAATTCCACAGTACTTGAT+CGG | 0.594214 | 4_3:-59356266 | None:intergenic |
| GCGAGTCAACTCGAGATCGG+AGG | 0.597744 | 4_3:-59353485 | None:intergenic |
| GAGCCTAATACCTATGACCA+TGG | 0.605194 | 4_3:+59354973 | Msa0651840:CDS |
| GACAAGGAGATTCATGCCAG+CGG | 0.608297 | 4_3:+59355006 | Msa0651840:CDS |
| GTCGTTGCATTCTCAGGGAT+AGG | 0.613936 | 4_3:+59356484 | Msa0651840:CDS |
| ATGTTCATTCCATGCAGAGT+CGG | 0.633709 | 4_3:+59355077 | Msa0651840:CDS |
| TCGAGATCGGAGGGGAACGT+CGG | 0.640659 | 4_3:-59353475 | None:intergenic |
| ACCAGGACCAGTCTAGACGC+TGG | 0.642505 | 4_3:+59354549 | Msa0651840:intron |
| TTGAAGACTGATGCAGCTGA+TGG | 0.643170 | 4_3:+59356235 | Msa0651840:CDS |
| GTCGCCGGAGGTGTTGTCGG+CGG | 0.654122 | 4_3:-59353539 | None:intergenic |
| CCTTGTCGCAAAGTAAACCA+TGG | 0.678411 | 4_3:-59354990 | None:intergenic |
| GAATGGAGATTACGACGGAG+AGG | 0.689455 | 4_3:-59353451 | None:intergenic |
| AGCTGCGCTCTCTAACATAG+GGG | 0.693425 | 4_3:-59354884 | None:intergenic |
| TGAAGTTACCTTAAACGGAG+CGG | 0.719373 | 4_3:-59353563 | None:intergenic |
| TCGGCGAATGGAGATTACGA+CGG | 0.740365 | 4_3:-59353456 | None:intergenic |
| GAGTCAACTCGAGATCGGAG+GGG | 0.744449 | 4_3:-59353483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTAATATCTAATAT+TGG | + | chr4_3:59354295-59354314 | Msa0651840:intron | 10.0% |
| !!! | ATCATTTTAGTAAATTGTTT+CGG | + | chr4_3:59354018-59354037 | Msa0651840:intron | 15.0% |
| !! | CTTTGAATATTAACATTTAA+AGG | + | chr4_3:59355487-59355506 | Msa0651840:intron | 15.0% |
| !!! | TTTTTTATTTGTCATATTAG+AGG | + | chr4_3:59356150-59356169 | Msa0651840:intron | 15.0% |
| !!! | TATGCTTCGATTTTTTTTTA+TGG | + | chr4_3:59353642-59353661 | Msa0651840:intron | 20.0% |
| !! | GTATAATTTATACATCTGTA+TGG | + | chr4_3:59353952-59353971 | Msa0651840:intron | 20.0% |
| !! | GAATGTAAAAAGAACAAATA+AGG | + | chr4_3:59354159-59354178 | Msa0651840:intron | 20.0% |
| !!! | TAAGGAAAATCATTTTGAAA+AGG | + | chr4_3:59354177-59354196 | Msa0651840:intron | 20.0% |
| !!! | TTTTTGATTGCTTGTAAATT+TGG | + | chr4_3:59354500-59354519 | Msa0651840:intron | 20.0% |
| !!! | TTAATTCTAAATTTTGTACC+AGG | + | chr4_3:59354532-59354551 | Msa0651840:intron | 20.0% |
| !!! | ATTTAAGTTTCTCTAAACAT+TGG | + | chr4_3:59355292-59355311 | Msa0651840:intron | 20.0% |
| !!! | ACATTTTATTCAATGTATTC+TGG | - | chr4_3:59355734-59355753 | None:intergenic | 20.0% |
| !! | AATGTATGACATAAATTTGT+TGG | + | chr4_3:59355749-59355768 | Msa0651840:intron | 20.0% |
| !!! | CTGTATTTAAATGAGTTTTA+TGG | + | chr4_3:59355942-59355961 | Msa0651840:intron | 20.0% |
| !!! | AAATAGTTTAAAAGCATAGT+GGG | - | chr4_3:59356019-59356038 | None:intergenic | 20.0% |
| !!! | AAAATAGTTTAAAAGCATAG+TGG | - | chr4_3:59356020-59356039 | None:intergenic | 20.0% |
| !! | AATCTCAAGTAAATTTGAAT+GGG | + | chr4_3:59356304-59356323 | Msa0651840:intron | 20.0% |
| ! | AAAACATAAACTCTAAACCA+CGG | - | chr4_3:59353831-59353850 | None:intergenic | 25.0% |
| ! | CAGAGATATTGAGATATTAT+AGG | - | chr4_3:59354374-59354393 | None:intergenic | 25.0% |
| ! | CTATAATATCTCAATATCTC+TGG | + | chr4_3:59354372-59354391 | Msa0651840:intron | 25.0% |
| ! | ATTGTCAATTTCAAACTCTT+GGG | - | chr4_3:59354452-59354471 | None:intergenic | 25.0% |
| ! | TATTGTCAATTTCAAACTCT+TGG | - | chr4_3:59354453-59354472 | None:intergenic | 25.0% |
| !!! | ATAATAAAGAGTGTCTATCA+TGG | + | chr4_3:59354470-59354489 | Msa0651840:intron | 25.0% |
| !!! | TAATAAAGAGTGTCTATCAT+GGG | + | chr4_3:59354471-59354490 | Msa0651840:intron | 25.0% |
| ! | ATTATCACACATAAACACAA+TGG | - | chr4_3:59354762-59354781 | None:intergenic | 25.0% |
| !! | AAAAAGGCTTTGATTATACT+GGG | - | chr4_3:59354791-59354810 | None:intergenic | 25.0% |
| !! | TAAAAAGGCTTTGATTATAC+TGG | - | chr4_3:59354792-59354811 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAGGGATAAAA+AGG | - | chr4_3:59354807-59354826 | None:intergenic | 25.0% |
| !!! | TACTTTTTCTTTTTGCATGT+TGG | + | chr4_3:59355126-59355145 | Msa0651840:intron | 25.0% |
| !! | TATTTAGTTTAAATGACCAC+TGG | + | chr4_3:59355328-59355347 | Msa0651840:intron | 25.0% |
| !!! | CCAAGAGAGTTTTTATTTAT+GGG | + | chr4_3:59355549-59355568 | Msa0651840:intron | 25.0% |
| ! | GCCTTTATAGATTTACATTT+GGG | + | chr4_3:59355590-59355609 | Msa0651840:intron | 25.0% |
| ! | ACCCAAATGTAAATCTATAA+AGG | - | chr4_3:59355594-59355613 | None:intergenic | 25.0% |
| ! | TTGATTCATTTCTCATAGAA+AGG | - | chr4_3:59355801-59355820 | None:intergenic | 25.0% |
| ! | TTTATGGTCCTTTAAATAAG+TGG | + | chr4_3:59355958-59355977 | Msa0651840:intron | 25.0% |
| ! | CTTGAAAACCACTTATTTAA+AGG | - | chr4_3:59355969-59355988 | None:intergenic | 25.0% |
| !! | AATAGTTTAAAAGCATAGTG+GGG | - | chr4_3:59356018-59356037 | None:intergenic | 25.0% |
| ! | AATTTACTTGAGATTGTTTC+AGG | - | chr4_3:59356299-59356318 | None:intergenic | 25.0% |
| ! | CAATCTCAAGTAAATTTGAA+TGG | + | chr4_3:59356303-59356322 | Msa0651840:intron | 25.0% |
| ! | GAAAAAATTGCGAGTTTTTG+TGG | + | chr4_3:59353666-59353685 | Msa0651840:intron | 30.0% |
| ! | TAGAAGATCTGAAATTGCTA+AGG | + | chr4_3:59353896-59353915 | Msa0651840:intron | 30.0% |
| !! | TTATATCCATGAGCTTGTTT+TGG | + | chr4_3:59354057-59354076 | Msa0651840:intron | 30.0% |
| CTCTGATTGTTAACAGAAAA+TGG | - | chr4_3:59354105-59354124 | None:intergenic | 30.0% | |
| TTGTCAATTTCAAACTCTTG+GGG | - | chr4_3:59354451-59354470 | None:intergenic | 30.0% | |
| ! | GTCATATCTTAGTTCTTTAG+AGG | + | chr4_3:59354589-59354608 | Msa0651840:CDS | 30.0% |
| AAAATACTCCTAGTATGCAT+AGG | + | chr4_3:59354705-59354724 | Msa0651840:CDS | 30.0% | |
| GAGACTGAAAGGAAAAAAAA+GGG | - | chr4_3:59354816-59354835 | None:intergenic | 30.0% | |
| AGAGACTGAAAGGAAAAAAA+AGG | - | chr4_3:59354817-59354836 | None:intergenic | 30.0% | |
| AAAACAACATCTTGTGTACA+AGG | - | chr4_3:59355204-59355223 | None:intergenic | 30.0% | |
| ACTATATGCATATACCTTGA+GGG | - | chr4_3:59355236-59355255 | None:intergenic | 30.0% | |
| TAACTGATATGCAATGTCTA+TGG | - | chr4_3:59355365-59355384 | None:intergenic | 30.0% | |
| !! | GCCAAGAGAGTTTTTATTTA+TGG | + | chr4_3:59355548-59355567 | Msa0651840:intron | 30.0% |
| CCCATAAATAAAAACTCTCT+TGG | - | chr4_3:59355552-59355571 | None:intergenic | 30.0% | |
| GGCCTTTATAGATTTACATT+TGG | + | chr4_3:59355589-59355608 | Msa0651840:intron | 30.0% | |
| ! | TTCTTTTTATGCTTTGACAG+TGG | + | chr4_3:59355614-59355633 | Msa0651840:intron | 30.0% |
| ! | TCTTTTTATGCTTTGACAGT+GGG | + | chr4_3:59355615-59355634 | Msa0651840:intron | 30.0% |
| TAGTTATGTATAAAGCCTTG+TGG | - | chr4_3:59355671-59355690 | None:intergenic | 30.0% | |
| CTAATAGTTCAGTTTACTTG+AGG | - | chr4_3:59355826-59355845 | None:intergenic | 30.0% | |
| AATATCACAACCTTATTCCT+GGG | - | chr4_3:59356117-59356136 | None:intergenic | 30.0% | |
| AAATATCACAACCTTATTCC+TGG | - | chr4_3:59356118-59356137 | None:intergenic | 30.0% | |
| TAAATTCCACAGTACTTGAT+CGG | - | chr4_3:59356269-59356288 | None:intergenic | 30.0% | |
| GAGTGTGAAGTTACCTTAAA+CGG | - | chr4_3:59353571-59353590 | None:intergenic | 35.0% | |
| ! | TCTGAAATTGCTAAGGATTG+AGG | + | chr4_3:59353903-59353922 | Msa0651840:intron | 35.0% |
| TAAGGATTGAGGTTTAACTG+TGG | + | chr4_3:59353914-59353933 | Msa0651840:intron | 35.0% | |
| TCAAATCCAAAACAAGCTCA+TGG | - | chr4_3:59354066-59354085 | None:intergenic | 35.0% | |
| TTCATGACTCAACTCATGAA+AGG | + | chr4_3:59354137-59354156 | Msa0651840:intron | 35.0% | |
| AAGAGATTTCGTACCATTGT+TGG | + | chr4_3:59354259-59354278 | Msa0651840:intron | 35.0% | |
| CATCGTTCTATACATTTACG+TGG | + | chr4_3:59354632-59354651 | Msa0651840:CDS | 35.0% | |
| GTTCTATACATTTACGTGGT+TGG | + | chr4_3:59354636-59354655 | Msa0651840:CDS | 35.0% | |
| TTTCAAGCTTGATCTTCTTC+TGG | - | chr4_3:59354858-59354877 | None:intergenic | 35.0% | |
| AAACCATGGTCATAGGTATT+AGG | - | chr4_3:59354979-59354998 | None:intergenic | 35.0% | |
| GACTATATGCATATACCTTG+AGG | - | chr4_3:59355237-59355256 | None:intergenic | 35.0% | |
| ! | TTTCCTGCAGTAAAAGCTTT+TGG | + | chr4_3:59355394-59355413 | Msa0651840:intron | 35.0% |
| ! | ATTCCAAAAGCTTTTACTGC+AGG | - | chr4_3:59355400-59355419 | None:intergenic | 35.0% |
| TGTTGTAATGTATGCTGCAA+TGG | + | chr4_3:59355431-59355450 | Msa0651840:intron | 35.0% | |
| !! | ATGTATGCTGCAATGGATTA+AGG | + | chr4_3:59355438-59355457 | Msa0651840:intron | 35.0% |
| !! | TGTATGCTGCAATGGATTAA+GGG | + | chr4_3:59355439-59355458 | Msa0651840:intron | 35.0% |
| ! | GGATTAAGGGGGTTAAATTT+TGG | + | chr4_3:59355452-59355471 | Msa0651840:intron | 35.0% |
| !!! | TGACAGTGGGTTTTTTAATG+TGG | + | chr4_3:59355628-59355647 | Msa0651840:intron | 35.0% |
| !!! | AGTGGGTTTTTTAATGTGGA+TGG | + | chr4_3:59355632-59355651 | Msa0651840:intron | 35.0% |
| CAATTAGAGCAAGAGAACAA+GGG | - | chr4_3:59355708-59355727 | None:intergenic | 35.0% | |
| TCAATTAGAGCAAGAGAACA+AGG | - | chr4_3:59355709-59355728 | None:intergenic | 35.0% | |
| ACTGAACTATTAGATCATCC+AGG | + | chr4_3:59355833-59355852 | Msa0651840:intron | 35.0% | |
| CTGAACTATTAGATCATCCA+GGG | + | chr4_3:59355834-59355853 | Msa0651840:intron | 35.0% | |
| !!! | ATTGTGATAGTTTTTTGCCC+AGG | + | chr4_3:59356097-59356116 | Msa0651840:intron | 35.0% |
| !!! | TAGTTTTTTGCCCAGGAATA+AGG | + | chr4_3:59356104-59356123 | Msa0651840:intron | 35.0% |
| ! | TTCATGTTCCTTTTATGAGC+AGG | + | chr4_3:59356338-59356357 | Msa0651840:intron | 35.0% |
| ! | CAGTCTGAAACTTTCCAAAT+GGG | - | chr4_3:59356368-59356387 | None:intergenic | 35.0% |
| AATTCAACACCAGAGAATGA+AGG | + | chr4_3:59356408-59356427 | Msa0651840:CDS | 35.0% | |
| TGAAGTTACCTTAAACGGAG+CGG | - | chr4_3:59353566-59353585 | None:intergenic | 40.0% | |
| GAACAACAGTCTCATTCACA+CGG | - | chr4_3:59353701-59353720 | None:intergenic | 40.0% | |
| TCTCGAAATTGTGCTTTGCA+TGG | + | chr4_3:59353794-59353813 | Msa0651840:intron | 40.0% | |
| ACACAATGGAGACTCTAAAC+TGG | - | chr4_3:59354748-59354767 | None:intergenic | 40.0% | |
| TTGTAGAGCTAGAGACTGAA+AGG | - | chr4_3:59354827-59354846 | None:intergenic | 40.0% | |
| ! | CAAGCTTTATCTACCATTGC+AGG | - | chr4_3:59354943-59354962 | None:intergenic | 40.0% |
| GCAAAGTAAACCATGGTCAT+AGG | - | chr4_3:59354986-59355005 | None:intergenic | 40.0% | |
| ATGTTCATTCCATGCAGAGT+CGG | + | chr4_3:59355077-59355096 | Msa0651840:CDS | 40.0% | |
| TACAAGGTGCAAGAAAAGAC+AGG | - | chr4_3:59355188-59355207 | None:intergenic | 40.0% | |
| TATGGCATTGTTTAAGCCAG+TGG | - | chr4_3:59355347-59355366 | None:intergenic | 40.0% | |
| !! | GTATGCTGCAATGGATTAAG+GGG | + | chr4_3:59355440-59355459 | Msa0651840:intron | 40.0% |
| !! | TATGCTGCAATGGATTAAGG+GGG | + | chr4_3:59355441-59355460 | Msa0651840:intron | 40.0% |
| !! | GGTTTATTGACTCTTCCACA+AGG | + | chr4_3:59355653-59355672 | Msa0651840:intron | 40.0% |
| ! | TTTTGCAAGACTATTCCACG+TGG | + | chr4_3:59356037-59356056 | Msa0651840:intron | 40.0% |
| TTTGCAAGACTATTCCACGT+GGG | + | chr4_3:59356038-59356057 | Msa0651840:intron | 40.0% | |
| ! | GTCTTCAACCTTTTAGCCAT+GGG | - | chr4_3:59356223-59356242 | None:intergenic | 40.0% |
| ! | AGTCTTCAACCTTTTAGCCA+TGG | - | chr4_3:59356224-59356243 | None:intergenic | 40.0% |
| ! | GCAGTCTGAAACTTTCCAAA+TGG | - | chr4_3:59356369-59356388 | None:intergenic | 40.0% |
| TTTGGAAAGTTTCAGACTGC+TGG | + | chr4_3:59356369-59356388 | Msa0651840:CDS | 40.0% | |
| AATTCATGGCCTTCATTCTC+TGG | - | chr4_3:59356420-59356439 | None:intergenic | 40.0% | |
| GGAGTTGAGATAGCAATTCA+TGG | - | chr4_3:59356434-59356453 | None:intergenic | 40.0% | |
| ! | TGCAACGACGAACAGATTTT+GGG | - | chr4_3:59356473-59356492 | None:intergenic | 40.0% |
| ! | ATGCAACGACGAACAGATTT+TGG | - | chr4_3:59356474-59356493 | None:intergenic | 40.0% |
| AATGGAGATTACGACGGAGA+GGG | - | chr4_3:59353453-59353472 | None:intergenic | 45.0% | |
| TGTTCCTGTAAACAGCTGCT+TGG | + | chr4_3:59353716-59353735 | Msa0651840:intron | 45.0% | |
| GTTCCTGTAAACAGCTGCTT+GGG | + | chr4_3:59353717-59353736 | Msa0651840:intron | 45.0% | |
| AAACCCAAGCAGCTGTTTAC+AGG | - | chr4_3:59353723-59353742 | None:intergenic | 45.0% | |
| CCAAGACTATGAGCCAACAA+TGG | - | chr4_3:59354275-59354294 | None:intergenic | 45.0% | |
| !! | CCATTGTTGGCTCATAGTCT+TGG | + | chr4_3:59354272-59354291 | Msa0651840:intron | 45.0% |
| TGGTTGGAGCTTTCACAGTA+GGG | + | chr4_3:59354652-59354671 | Msa0651840:CDS | 45.0% | |
| TACTCCTAGTATGCATAGGC+AGG | + | chr4_3:59354709-59354728 | Msa0651840:CDS | 45.0% | |
| !! | CAGTCTCTAGCTCTACAAGA+TGG | + | chr4_3:59354829-59354848 | Msa0651840:intron | 45.0% |
| ! | GCTGATTCTCATGTTGTTGC+AGG | + | chr4_3:59354904-59354923 | Msa0651840:CDS | 45.0% |
| TTATCTACCATTGCAGGTCC+TGG | - | chr4_3:59354937-59354956 | None:intergenic | 45.0% | |
| GAGCCTAATACCTATGACCA+TGG | + | chr4_3:59354973-59354992 | Msa0651840:CDS | 45.0% | |
| CCTTGTCGCAAAGTAAACCA+TGG | - | chr4_3:59354993-59355012 | None:intergenic | 45.0% | |
| CCATGGTTTACTTTGCGACA+AGG | + | chr4_3:59354990-59355009 | Msa0651840:CDS | 45.0% | |
| TTGCTTCTCCACACAACTTG+CGG | - | chr4_3:59355058-59355077 | None:intergenic | 45.0% | |
| GAGTCGGATTGCAGTACTAT+AGG | + | chr4_3:59355093-59355112 | Msa0651840:CDS | 45.0% | |
| ! | GTTTTTCATGCTCACCCTCA+AGG | + | chr4_3:59355219-59355238 | Msa0651840:intron | 45.0% |
| CCAGTGTACATCAATCAGCA+GGG | + | chr4_3:59355523-59355542 | Msa0651840:intron | 45.0% | |
| CAGTGTACATCAATCAGCAG+GGG | + | chr4_3:59355524-59355543 | Msa0651840:intron | 45.0% | |
| TGGGACTAGAGTATGATGCA+TGG | + | chr4_3:59355568-59355587 | Msa0651840:intron | 45.0% | |
| TTAGATCATCCAGGGACAGA+AGG | + | chr4_3:59355842-59355861 | Msa0651840:intron | 45.0% | |
| AAGATTGTTCCTTCTGTCCC+TGG | - | chr4_3:59355854-59355873 | None:intergenic | 45.0% | |
| TAGAATTAGTATCGCCCACG+TGG | - | chr4_3:59356055-59356074 | None:intergenic | 45.0% | |
| GGTCAGTGATCAGAACTTCA+AGG | + | chr4_3:59356171-59356190 | Msa0651840:CDS | 45.0% | |
| TTGAAGACTGATGCAGCTGA+TGG | + | chr4_3:59356235-59356254 | Msa0651840:CDS | 45.0% | |
| TGGGACAACCTGCTCATAAA+AGG | - | chr4_3:59356349-59356368 | None:intergenic | 45.0% | |
| TATGAGCAGGTTGTCCCATT+TGG | + | chr4_3:59356351-59356370 | Msa0651840:intron | 45.0% | |
| !!! | GACGAACAGATTTTGGGACA+CGG | - | chr4_3:59356467-59356486 | None:intergenic | 45.0% |
| TGTTCGTCGTTGCATTCTCA+GGG | + | chr4_3:59356479-59356498 | Msa0651840:CDS | 45.0% | |
| GAATGGAGATTACGACGGAG+AGG | - | chr4_3:59353454-59353473 | None:intergenic | 50.0% | |
| TCGGCGAATGGAGATTACGA+CGG | - | chr4_3:59353459-59353478 | None:intergenic | 50.0% | |
| GGAGGAGTCGGAAAAAGAAG+CGG | - | chr4_3:59353512-59353531 | None:intergenic | 50.0% | |
| AACAGTCTCATTCACACGGC+TGG | - | chr4_3:59353697-59353716 | None:intergenic | 50.0% | |
| GTGGTTGGAGCTTTCACAGT+AGG | + | chr4_3:59354651-59354670 | Msa0651840:CDS | 50.0% | |
| CTGACCTGCCTATGCATACT+AGG | - | chr4_3:59354716-59354735 | None:intergenic | 50.0% | |
| AGCTGCGCTCTCTAACATAG+GGG | - | chr4_3:59354887-59354906 | None:intergenic | 50.0% | |
| CAGCTGCGCTCTCTAACATA+GGG | - | chr4_3:59354888-59354907 | None:intergenic | 50.0% | |
| TCAGCTGCGCTCTCTAACAT+AGG | - | chr4_3:59354889-59354908 | None:intergenic | 50.0% | |
| GTTGTTGCAGGAAGTGAACC+AGG | + | chr4_3:59354916-59354935 | Msa0651840:CDS | 50.0% | |
| AAGTGAACCAGGACCTGCAA+TGG | + | chr4_3:59354927-59354946 | Msa0651840:CDS | 50.0% | |
| GACAAGGAGATTCATGCCAG+CGG | + | chr4_3:59355006-59355025 | Msa0651840:CDS | 50.0% | |
| ACAAGGAGATTCATGCCAGC+GGG | + | chr4_3:59355007-59355026 | Msa0651840:CDS | 50.0% | |
| ACAACTTGCGGCTGACATGT+TGG | - | chr4_3:59355046-59355065 | None:intergenic | 50.0% | |
| TACTGCAATCCGACTCTGCA+TGG | - | chr4_3:59355089-59355108 | None:intergenic | 50.0% | |
| GCTGATTGATGTACACTGGC+TGG | - | chr4_3:59355522-59355541 | None:intergenic | 50.0% | |
| GCCAGTGTACATCAATCAGC+AGG | + | chr4_3:59355522-59355541 | Msa0651840:intron | 50.0% | |
| ! | CCCTGCTGATTGATGTACAC+TGG | - | chr4_3:59355526-59355545 | None:intergenic | 50.0% |
| GAACAAGGGCTCAGGTATCA+TGG | - | chr4_3:59355694-59355713 | None:intergenic | 50.0% | |
| !! | CAAGCACCGATCAAGTACTG+TGG | + | chr4_3:59356260-59356279 | Msa0651840:intron | 50.0% |
| TTGGGACACGGAAACTCTCT+GGG | - | chr4_3:59356455-59356474 | None:intergenic | 50.0% | |
| ! | TTTGGGACACGGAAACTCTC+TGG | - | chr4_3:59356456-59356475 | None:intergenic | 50.0% |
| CTGTTCGTCGTTGCATTCTC+AGG | + | chr4_3:59356478-59356497 | Msa0651840:CDS | 50.0% | |
| GTCGTTGCATTCTCAGGGAT+AGG | + | chr4_3:59356484-59356503 | Msa0651840:CDS | 50.0% | |
| GAGTCAACTCGAGATCGGAG+GGG | - | chr4_3:59353486-59353505 | None:intergenic | 55.0% | |
| CGAGTCAACTCGAGATCGGA+GGG | - | chr4_3:59353487-59353506 | None:intergenic | 55.0% | |
| GGAGCGAGTCAACTCGAGAT+CGG | - | chr4_3:59353491-59353510 | None:intergenic | 55.0% | |
| GCATGGCGATTAAGCTTCCG+TGG | + | chr4_3:59353811-59353830 | Msa0651840:intron | 55.0% | |
| GATCTGTCCAGCGTCTAGAC+TGG | - | chr4_3:59354559-59354578 | None:intergenic | 55.0% | |
| CATGTCAGCCGCAAGTTGTG+TGG | + | chr4_3:59355047-59355066 | Msa0651840:CDS | 55.0% | |
| GAGCAAGAGAACAAGGGCTC+AGG | - | chr4_3:59355702-59355721 | None:intergenic | 55.0% | |
| ! | CATGGGCATGCTGCTTGAAC+TGG | - | chr4_3:59356206-59356225 | None:intergenic | 55.0% |
| CAGTTCAAGCAGCATGCCCA+TGG | + | chr4_3:59356204-59356223 | Msa0651840:CDS | 55.0% | |
| GCAGCATGCCCATGGCTAAA+AGG | + | chr4_3:59356212-59356231 | Msa0651840:CDS | 55.0% | |
| TCGAGATCGGAGGGGAACGT+CGG | - | chr4_3:59353478-59353497 | None:intergenic | 60.0% | |
| GCGAGTCAACTCGAGATCGG+AGG | - | chr4_3:59353488-59353507 | None:intergenic | 60.0% | |
| ACCAGGACCAGTCTAGACGC+TGG | + | chr4_3:59354549-59354568 | Msa0651840:intron | 60.0% | |
| ! | TCCAGCGTCTAGACTGGTCC+TGG | - | chr4_3:59354553-59354572 | None:intergenic | 60.0% |
| GGCAAATGCTGAACTCCCGC+TGG | - | chr4_3:59355025-59355044 | None:intergenic | 60.0% | |
| ACCACCGCCGACAACACCTC+CGG | + | chr4_3:59353535-59353554 | Msa0651840:CDS | 65.0% | |
| CTTAAACGGAGCGGCGTCGC+CGG | - | chr4_3:59353557-59353576 | None:intergenic | 65.0% | |
| CGGAGGGGAACGTCGGCGAA+TGG | - | chr4_3:59353471-59353490 | None:intergenic | 70.0% | |
| ! | GGTGTTGTCGGCGGTGGTGG+CGG | - | chr4_3:59353533-59353552 | None:intergenic | 70.0% |
| !! | GGAGGTGTTGTCGGCGGTGG+TGG | - | chr4_3:59353536-59353555 | None:intergenic | 70.0% |
| !! | GTCGCCGGAGGTGTTGTCGG+CGG | - | chr4_3:59353542-59353561 | None:intergenic | 70.0% |
| !! | GGCGTCGCCGGAGGTGTTGT+CGG | - | chr4_3:59353545-59353564 | None:intergenic | 70.0% |
| CGGCGACGCCGCTCCGTTTA+AGG | + | chr4_3:59353555-59353574 | Msa0651840:CDS | 70.0% | |
| !! | GGCGGTGGTGGCGGAGGAGT+CGG | - | chr4_3:59353524-59353543 | None:intergenic | 75.0% |
| !! | GTTGTCGGCGGTGGTGGCGG+AGG | - | chr4_3:59353530-59353549 | None:intergenic | 75.0% |
| !! | GCCGGAGGTGTTGTCGGCGG+TGG | - | chr4_3:59353539-59353558 | None:intergenic | 75.0% |
| AAACGGAGCGGCGTCGCCGG+AGG | - | chr4_3:59353554-59353573 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59353436 | 59356509 | 59353436 | ID=Msa0651840;Name=Msa0651840 |
| chr4_3 | mRNA | 59353436 | 59356509 | 59353436 | ID=Msa0651840-mRNA-1;Parent=Msa0651840;Name=Msa0651840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|284 |
| chr4_3 | exon | 59353436 | 59353576 | 59353436 | ID=Msa0651840-mRNA-1:exon:15860;Parent=Msa0651840-mRNA-1 |
| chr4_3 | exon | 59354554 | 59354730 | 59354554 | ID=Msa0651840-mRNA-1:exon:15861;Parent=Msa0651840-mRNA-1 |
| chr4_3 | exon | 59354832 | 59355114 | 59354832 | ID=Msa0651840-mRNA-1:exon:15862;Parent=Msa0651840-mRNA-1 |
| chr4_3 | exon | 59356170 | 59356273 | 59356170 | ID=Msa0651840-mRNA-1:exon:15863;Parent=Msa0651840-mRNA-1 |
| chr4_3 | exon | 59356360 | 59356509 | 59356360 | ID=Msa0651840-mRNA-1:exon:15864;Parent=Msa0651840-mRNA-1 |
| chr4_3 | CDS | 59353436 | 59353576 | 59353436 | ID=Msa0651840-mRNA-1:cds;Parent=Msa0651840-mRNA-1 |
| chr4_3 | CDS | 59354554 | 59354730 | 59354554 | ID=Msa0651840-mRNA-1:cds;Parent=Msa0651840-mRNA-1 |
| chr4_3 | CDS | 59354832 | 59355114 | 59354832 | ID=Msa0651840-mRNA-1:cds;Parent=Msa0651840-mRNA-1 |
| chr4_3 | CDS | 59356170 | 59356273 | 59356170 | ID=Msa0651840-mRNA-1:cds;Parent=Msa0651840-mRNA-1 |
| chr4_3 | CDS | 59356360 | 59356509 | 59356360 | ID=Msa0651840-mRNA-1:cds;Parent=Msa0651840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
