AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611610 MtrunA17_Chr4g0045091 99.024 410 4 0 1 410 1 410 0.0 836
Msa0611610 MtrunA17_Chr3g0133761 48.768 406 198 6 11 410 5 406 6.59e-130 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611610 AT2G15695.1 54.374 423 168 7 9 410 2 420 4.87e-155 444
Msa0611610 AT5G44250.1 46.305 406 205 8 11 410 5 403 5.10e-120 355
Msa0611610 AT5G44250.2 45.955 309 156 7 106 410 1 302 5.61e-86 264

Find 120 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTGTCTTCAGAATTT+TGG 0.059999 4_2:-59865696 Msa0611610:intron
CTAGATGTTACAAGTGATTT+TGG 0.148183 4_2:-59865963 Msa0611610:CDS
TTGTTTAGGAACTGTGTTTC+TGG 0.150597 4_2:-59866008 Msa0611610:CDS
AGCTGCTGTGAGCCATTTAT+TGG 0.192871 4_2:-59865419 Msa0611610:CDS
AATTCACGTGTTTCGCTTAC+TGG 0.198836 4_2:-59868547 Msa0611610:five_prime_UTR
CCTAAAACTAAAGGCCAATT+TGG 0.216009 4_2:-59868787 Msa0611610:five_prime_UTR
CTGTCTGTACAAATTATTTC+AGG 0.229050 4_2:-59866285 Msa0611610:intron
TCCCAACCTTCAACATTCTT+TGG 0.240471 4_2:+59865079 None:intergenic
ATGCGTTTAATTCCTCTAAA+AGG 0.247530 4_2:+59865010 None:intergenic
GTTGACCTTTACTCCTCTTT+AGG 0.255986 4_2:-59868372 Msa0611610:CDS
GATATGAATATGATAGATTT+TGG 0.260174 4_2:-59864886 Msa0611610:three_prime_UTR
ACTTACTGTTAGAAATAAAC+TGG 0.276365 4_2:-59864668 Msa0611610:three_prime_UTR
TCCTTTGTCTCGTAAAATTC+AGG 0.280019 4_2:+59864910 None:intergenic
TCTGGACATATATATGATTC+TGG 0.283472 4_2:-59865990 Msa0611610:CDS
CGCTGTGAGCGCTGATGCTT+GGG 0.291912 4_2:+59865134 None:intergenic
AACAACAATGATAGAGAATC+TGG 0.310572 4_2:-59865205 Msa0611610:CDS
AGTTCCACAAAACCTGTTAC+AGG 0.311517 4_2:-59868400 Msa0611610:CDS
ATATATTTGTGGGAATAAAT+AGG 0.316543 4_2:-59864502 Msa0611610:three_prime_UTR
GACCATCAAAGCTTGTTTCT+TGG 0.325748 4_2:-59865899 Msa0611610:CDS
GTTGAATTTGAAGATTGATA+TGG 0.338521 4_2:-59864790 Msa0611610:three_prime_UTR
GGTCAACGAATTCCTGTAAC+AGG 0.339829 4_2:+59868388 None:intergenic
AATAAGAATGAATAATAAAA+TGG 0.342130 4_2:+59868729 None:intergenic
ACACGGCCTTCTCCAATAAA+TGG 0.355167 4_2:+59865407 None:intergenic
GGTAATATAATTGTTTGAAA+TGG 0.357649 4_2:-59864615 Msa0611610:three_prime_UTR
AGCATGACTGTCAATTGTTT+AGG 0.377794 4_2:-59866022 Msa0611610:CDS
ATCAGCGCTCACAGCGTCCT+TGG 0.388256 4_2:-59865127 Msa0611610:CDS
GAGTTTGACAGAAGTTGATA+TGG 0.397401 4_2:-59864384 Msa0611610:three_prime_UTR
ACCATCAAAGCTTGTTTCTT+GGG 0.398334 4_2:-59865898 Msa0611610:CDS
TCCGAACATAAAATGAGAAA+TGG 0.399424 4_2:+59865669 None:intergenic
GTAGCAAAGTCTGTTGCATC+TGG 0.399698 4_2:-59865876 Msa0611610:CDS
TAGACACTGGATATCCAAAT+TGG 0.403204 4_2:+59868773 None:intergenic
ACCCAAGAAACAAGCTTTGA+TGG 0.403500 4_2:+59865897 None:intergenic
GGCTCACAGCAGCTCTGTAT+TGG 0.405682 4_2:+59865428 None:intergenic
AATCTCAATCAGCTGATCAT+TGG 0.409867 4_2:-59865824 Msa0611610:CDS
ACCTTTACTCCTCTTTAGGT+TGG 0.415566 4_2:-59868368 Msa0611610:CDS
CGAGAAAGAACTGGTATTGA+TGG 0.422478 4_2:-59865355 Msa0611610:CDS
GTAAGAAAAGCAGAATATTC+CGG 0.423883 4_2:-59864435 Msa0611610:three_prime_UTR
GAATCGTTGTAATCTTTGCT+TGG 0.425804 4_2:-59868428 Msa0611610:CDS
TGATTGCCGTAGATATAAAC+AGG 0.428325 4_2:-59864739 Msa0611610:three_prime_UTR
AGAAACAAGCTTTGATGGTC+CGG 0.428964 4_2:+59865902 None:intergenic
AATCGTTGTAATCTTTGCTT+GGG 0.431280 4_2:-59868427 Msa0611610:CDS
ACGCTGTGAGCGCTGATGCT+TGG 0.436180 4_2:+59865133 None:intergenic
TCAGCGCTCACAGCGTCCTT+GGG 0.444207 4_2:-59865126 Msa0611610:CDS
CTGAAATAATTTGTACAGAC+AGG 0.451620 4_2:+59866286 None:intergenic
TACGAGGCGGTAACATCTAC+TGG 0.455529 4_2:-59868479 Msa0611610:CDS
ATCGCTATGCGTGGAGTTGA+AGG 0.456928 4_2:-59868510 Msa0611610:exon
ATAATTGTTGTCACTCAGAA+AGG 0.465152 4_2:-59864704 Msa0611610:three_prime_UTR
TGAGGAAAGTGCGGTGCCAT+TGG 0.467523 4_2:-59866681 Msa0611610:CDS
AATTAATTGCAACTTTCTGC+AGG 0.468910 4_2:+59865299 None:intergenic
TGATCACCTGTTTATATCTA+CGG 0.470526 4_2:+59864733 None:intergenic
TGGGAAGCTAGGAGCACAAA+CGG 0.476633 4_2:+59865153 None:intergenic
TTGTGTCTGTATATATTTGT+GGG 0.477753 4_2:-59864512 Msa0611610:three_prime_UTR
TTGTTATGTCCTGCTGAACT+AGG 0.479809 4_2:+59865223 None:intergenic
TAATTGTTGTCACTCAGAAA+GGG 0.483083 4_2:-59864703 Msa0611610:three_prime_UTR
TCCAAAGAATGTTGAAGGTT+GGG 0.486461 4_2:-59865080 Msa0611610:CDS
AAGAGAATTCCAACCTAAAG+AGG 0.487518 4_2:+59868359 None:intergenic
AAAGTCTGTTGCATCTGGTT+TGG 0.487705 4_2:-59865871 Msa0611610:CDS
GGTTGCGATGATTCAACTAT+CGG 0.504787 4_2:-59864820 Msa0611610:three_prime_UTR
TGTGTTCCAAAGAATGTTGA+AGG 0.505151 4_2:-59865085 Msa0611610:CDS
TCTTCTTTCTGTTCGTCCCG+TGG 0.505476 4_2:+59865178 None:intergenic
TTTAGAGGAATTAAACGCAT+TGG 0.506775 4_2:-59865007 Msa0611610:CDS
ATTCACGTGTTTCGCTTACT+GGG 0.507630 4_2:-59868546 Msa0611610:five_prime_UTR
TCCAACCTAAAGAGGAGTAA+AGG 0.510951 4_2:+59868367 None:intergenic
AATAATAAAATGGTGGGTGA+TGG 0.512020 4_2:+59868739 None:intergenic
ACAGCAGCTCTGTATTGGAT+TGG 0.516355 4_2:+59865433 None:intergenic
ATACTTGAACGAGAAAGAAC+TGG 0.518031 4_2:-59865364 Msa0611610:CDS
GAAACAAGCTTTGATGGTCC+GGG 0.522040 4_2:+59865903 None:intergenic
AAATCACTTGTAACATCTAG+TGG 0.525521 4_2:+59865966 None:intergenic
ATGCACAGCTCCACTCAACT+TGG 0.526381 4_2:-59866139 Msa0611610:intron
TCAATCAGCTGATCATTGGC+AGG 0.527299 4_2:-59865820 Msa0611610:CDS
AAGAATGAATAATAAAATGG+TGG 0.527859 4_2:+59868732 None:intergenic
TTTGGGTTACGCAGGTGCTA+AGG 0.530778 4_2:-59866358 Msa0611610:intron
TCAAACAATTATATTACCTA+GGG 0.531119 4_2:+59864620 None:intergenic
GCGCTGATGCTTGGGAAGCT+AGG 0.531134 4_2:+59865142 None:intergenic
TTTGTGTCTGTATATATTTG+TGG 0.536831 4_2:-59864513 Msa0611610:three_prime_UTR
AACTGGGTGATGTTTGACTA+AGG 0.537810 4_2:-59864651 Msa0611610:three_prime_UTR
TTACGCAGGTGCTAAGGACT+AGG 0.538684 4_2:-59866352 Msa0611610:intron
CTCTTCATCCAGGTTCAATG+AGG 0.542042 4_2:-59866699 Msa0611610:intron
CCTTCCATTGCAAAAGTGCC+CGG 0.550129 4_2:-59865921 Msa0611610:CDS
ACACGAATCCCTAAAACTAA+AGG 0.551875 4_2:-59868796 Msa0611610:five_prime_UTR
GCCACATACGATACAACGGC+CGG 0.555070 4_2:+59864851 None:intergenic
GTTGCGATGATTCAACTATC+GGG 0.555172 4_2:-59864819 Msa0611610:three_prime_UTR
TTCCAAAGAATGTTGAAGGT+TGG 0.557791 4_2:-59865081 Msa0611610:CDS
ACAGAAGTTGATATGGCGTA+CGG 0.559442 4_2:-59864377 Msa0611610:three_prime_UTR
TGTGAGCCATTTATTGGAGA+AGG 0.562192 4_2:-59865413 Msa0611610:CDS
TTCAAACAATTATATTACCT+AGG 0.572767 4_2:+59864619 None:intergenic
AATTGCATTACCAAGTTGAG+TGG 0.572964 4_2:+59866129 None:intergenic
GGGAAGCTAGGAGCACAAAC+GGG 0.575953 4_2:+59865154 None:intergenic
GAATAAATAGGCCATGTTTG+AGG 0.576240 4_2:-59864490 Msa0611610:three_prime_UTR
GCCGGCCGTTGTATCGTATG+TGG 0.576515 4_2:-59864852 Msa0611610:three_prime_UTR
AGAATGAATAATAAAATGGT+GGG 0.578892 4_2:+59868733 None:intergenic
CAATCAGAAAATAACAGTGA+TGG 0.582559 4_2:+59868621 None:intergenic
ATAGAGAATCTGGGATTCCA+CGG 0.590079 4_2:-59865195 Msa0611610:CDS
TTAAACGCATTGGTCGCTCT+AGG 0.593892 4_2:-59864997 Msa0611610:CDS
AATTGTTGTCACTCAGAAAG+GGG 0.597182 4_2:-59864702 Msa0611610:three_prime_UTR
GAAGCAAACACAACAGGACA+TGG 0.602944 4_2:+59866329 None:intergenic
ATACAAATGCAGCTTAGTGA+AGG 0.607255 4_2:-59866165 Msa0611610:intron
ACGAGGCGGTAACATCTACT+GGG 0.608927 4_2:-59868478 Msa0611610:CDS
AAACACGACACTGATTTCAA+AGG 0.610001 4_2:-59868450 Msa0611610:CDS
ACAACAATGATAGAGAATCT+GGG 0.610595 4_2:-59865204 Msa0611610:CDS
GTTGAAGGTTGTGCCGTACG+AGG 0.611614 4_2:-59868495 Msa0611610:CDS
ATAATAAAATGGTGGGTGAT+GGG 0.612121 4_2:+59868740 None:intergenic
TATCGTATGTGGCAGTGCAA+TGG 0.614155 4_2:-59864841 Msa0611610:three_prime_UTR
TCTCATATCATCGCTATGCG+TGG 0.615765 4_2:-59868519 Msa0611610:exon
GTAGATGTTACCGCCTCGTA+CGG 0.628127 4_2:+59868482 None:intergenic
ATTGTTGTCACTCAGAAAGG+GGG 0.629465 4_2:-59864701 Msa0611610:three_prime_UTR
TTTGTGGGAATCGGAATGGG+AGG 0.631152 4_2:-59865045 Msa0611610:CDS
TAGAGAATCTGGGATTCCAC+GGG 0.635772 4_2:-59865194 Msa0611610:CDS
AATCAAACAAAGTAAAACAC+CGG 0.640359 4_2:+59864416 None:intergenic
GACTAAGGTAACTACTCCCT+AGG 0.640949 4_2:-59864636 Msa0611610:three_prime_UTR
CTTACTGTTAGAAATAAACT+GGG 0.641712 4_2:-59864667 Msa0611610:three_prime_UTR
AAATGGAGAAAGATGTACTG+AGG 0.652160 4_2:-59864598 Msa0611610:three_prime_UTR
CTGAGAAGCTCATCTCACGT+TGG 0.660450 4_2:-59865561 Msa0611610:intron
CACTGCCACATACGATACAA+CGG 0.663114 4_2:+59864847 None:intergenic
GAAGGTTGTGCCGTACGAGG+CGG 0.663173 4_2:-59868492 Msa0611610:CDS
CAGGTTCAATGAGGAAAGTG+CGG 0.674947 4_2:-59866690 Msa0611610:CDS
TTGTTGTCACTCAGAAAGGG+GGG 0.681187 4_2:-59864700 Msa0611610:three_prime_UTR
TGGAAGGGTGTAGAGAAAAG+CGG 0.685152 4_2:+59865937 None:intergenic
GGGTGATGCTGAGTAGACAC+TGG 0.688398 4_2:+59868760 None:intergenic
CGAGGCGGTAACATCTACTG+GGG 0.743069 4_2:-59868477 Msa0611610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAATGAATAATAAAA+TGG + chr4_2:59864452-59864471 None:intergenic 10.0%
!!! TTTTTTTTTTTTTCTTTCTA+TGG + chr4_2:59864584-59864603 None:intergenic 10.0%
!!! AATCTTTGTTTAGTAATTTT+TGG - chr4_2:59865033-59865052 Msa0611610:CDS 15.0%
!! TTGTCAATTTACAATTAATT+AGG - chr4_2:59866596-59866615 Msa0611610:intron 15.0%
!! AGAATGAATAATAAAATGGT+GGG + chr4_2:59864448-59864467 None:intergenic 20.0%
!! AAGAATGAATAATAAAATGG+TGG + chr4_2:59864449-59864468 None:intergenic 20.0%
!!! CATTTTTTTTTCAATTTCGT+TGG - chr4_2:59864896-59864915 Msa0611610:three_prime_UTR 20.0%
!! AATAGAATTATTGGATTTAG+AGG - chr4_2:59864925-59864944 Msa0611610:three_prime_UTR 20.0%
!!! AGTATAATCATGTATGATTT+TGG - chr4_2:59865064-59865083 Msa0611610:CDS 20.0%
!!! CGATCAGAATTATTATATTT+TGG - chr4_2:59865123-59865142 Msa0611610:CDS 20.0%
!!! TCAGAATTATTATATTTTGG+AGG - chr4_2:59865126-59865145 Msa0611610:CDS 20.0%
!! ACTTGTGAAATTAAGAATAT+GGG - chr4_2:59865549-59865568 Msa0611610:intron 20.0%
!!! GATTTCATTTTTATTCCTAT+AGG - chr4_2:59865684-59865703 Msa0611610:CDS 20.0%
!!! TAATGATATTTAGAATGACA+AGG - chr4_2:59865833-59865852 Msa0611610:CDS 20.0%
!!! AATATTTTTAGAGTTGGTTA+GGG + chr4_2:59866067-59866086 None:intergenic 20.0%
!!! ATTCTGAATATTTTTAGAGT+TGG + chr4_2:59866073-59866092 None:intergenic 20.0%
!!! ACACGTTATTTTTTTGAATA+AGG - chr4_2:59866375-59866394 Msa0611610:intron 20.0%
!! TTCATACCAAAGATAAAAAT+TGG + chr4_2:59866932-59866951 None:intergenic 20.0%
!! TGAATTAATAAATTCCACAA+TGG + chr4_2:59867123-59867142 None:intergenic 20.0%
!! AAAAAATAAAAACCGAAACA+TGG + chr4_2:59867438-59867457 None:intergenic 20.0%
!! TAGTTATTATTATCTGATTC+AGG - chr4_2:59867706-59867725 Msa0611610:intron 20.0%
!!! GATATGAATATGATAGATTT+TGG - chr4_2:59868292-59868311 Msa0611610:intron 20.0%
!! TCAAACAATTATATTACCTA+GGG + chr4_2:59868561-59868580 None:intergenic 20.0%
!! TTCAAACAATTATATTACCT+AGG + chr4_2:59868562-59868581 None:intergenic 20.0%
!! GGTAATATAATTGTTTGAAA+TGG - chr4_2:59868563-59868582 Msa0611610:five_prime_UTR 20.0%
!! ATATATTTGTGGGAATAAAT+AGG - chr4_2:59868676-59868695 Msa0611610:five_prime_UTR 20.0%
! AATCCAATAATTCTATTCCA+TGG + chr4_2:59864922-59864941 None:intergenic 25.0%
! AAATTTGCGAGTTAATAGAT+AGG - chr4_2:59865398-59865417 Msa0611610:CDS 25.0%
! CTTATTCTATTCTCAACAAA+TGG + chr4_2:59865477-59865496 None:intergenic 25.0%
! AATAAGTTACTCCAAAGATT+GGG - chr4_2:59865491-59865510 Msa0611610:intron 25.0%
! GACTTGTGAAATTAAGAATA+TGG - chr4_2:59865548-59865567 Msa0611610:intron 25.0%
!! CAAGATTCAATGCTATATTT+TGG + chr4_2:59865620-59865639 None:intergenic 25.0%
!!! ATATTTTTAGAGTTGGTTAG+GGG + chr4_2:59866066-59866085 None:intergenic 25.0%
!!! GAATATTTTTAGAGTTGGTT+AGG + chr4_2:59866068-59866087 None:intergenic 25.0%
! TAACTTACAAGTATACTGAT+AGG + chr4_2:59866267-59866286 None:intergenic 25.0%
! GTATTTGTAAGAACAGATTT+AGG + chr4_2:59866313-59866332 None:intergenic 25.0%
! ATAACCAACTAAGTATCTAT+TGG - chr4_2:59866350-59866369 Msa0611610:intron 25.0%
! AGGTGAGTACAAATTTAATA+CGG + chr4_2:59866407-59866426 None:intergenic 25.0%
! TCAAAAACATAAAATGCCAA+TGG + chr4_2:59866516-59866535 None:intergenic 25.0%
!!! TGTTTTTGATGAACTTATTG+AGG - chr4_2:59866527-59866546 Msa0611610:intron 25.0%
!!! CAATAGAAGAAACTTTTTCT+TGG - chr4_2:59866659-59866678 Msa0611610:CDS 25.0%
!! ACTTGTTAAGAAATCAAAAG+AGG + chr4_2:59866753-59866772 None:intergenic 25.0%
! TTTAAGTGAAAAGATTGCTT+TGG - chr4_2:59866802-59866821 Msa0611610:intron 25.0%
! TTAAGTGAAAAGATTGCTTT+GGG - chr4_2:59866803-59866822 Msa0611610:intron 25.0%
!! AGTCATCCAATTTTTATCTT+TGG - chr4_2:59866923-59866942 Msa0611610:intron 25.0%
!! ATTGTTGTCTTCAGAATTTT+GGG - chr4_2:59867483-59867502 Msa0611610:intron 25.0%
!! TCCATTTCTCATTTTATGTT+CGG - chr4_2:59867508-59867527 Msa0611610:intron 25.0%
! GTTGAATTTGAAGATTGATA+TGG - chr4_2:59868388-59868407 Msa0611610:CDS 25.0%
! ACTTACTGTTAGAAATAAAC+TGG - chr4_2:59868510-59868529 Msa0611610:exon 25.0%
! CTTACTGTTAGAAATAAACT+GGG - chr4_2:59868511-59868530 Msa0611610:exon 25.0%
!! TTTTCTTTTTGACAATTCTG+AGG - chr4_2:59868612-59868631 Msa0611610:five_prime_UTR 25.0%
! TTTGTGTCTGTATATATTTG+TGG - chr4_2:59868665-59868684 Msa0611610:five_prime_UTR 25.0%
! TTGTGTCTGTATATATTTGT+GGG - chr4_2:59868666-59868685 Msa0611610:five_prime_UTR 25.0%
! AATCAAACAAAGTAAAACAC+CGG + chr4_2:59868765-59868784 None:intergenic 25.0%
!!! CAAATTGGCCTTTAGTTTTA+GGG + chr4_2:59864393-59864412 None:intergenic 30.0%
!! ATAATAAAATGGTGGGTGAT+GGG + chr4_2:59864441-59864460 None:intergenic 30.0%
!! AATAATAAAATGGTGGGTGA+TGG + chr4_2:59864442-59864461 None:intergenic 30.0%
!!! TAACAGTGATGGTTTTGAAT+CGG + chr4_2:59864549-59864568 None:intergenic 30.0%
CAATCAGAAAATAACAGTGA+TGG + chr4_2:59864560-59864579 None:intergenic 30.0%
AATCGTTGTAATCTTTGCTT+GGG - chr4_2:59864751-59864770 Msa0611610:three_prime_UTR 30.0%
!! TTTAGAGGTTGATAGATTGA+TGG - chr4_2:59864940-59864959 Msa0611610:three_prime_UTR 30.0%
!! TTAGAGGTTGATAGATTGAT+GGG - chr4_2:59864941-59864960 Msa0611610:three_prime_UTR 30.0%
! ATGTTGTGTACTTAGTTCTT+TGG - chr4_2:59865095-59865114 Msa0611610:CDS 30.0%
!! TCCTTCTAGTTAAGTGTTTT+TGG - chr4_2:59865158-59865177 Msa0611610:CDS 30.0%
!! CCTTCTAGTTAAGTGTTTTT+GGG - chr4_2:59865159-59865178 Msa0611610:CDS 30.0%
TATAACCATTCCAAATGGTT+AGG + chr4_2:59865243-59865262 None:intergenic 30.0%
TATAGCAACAAAAACTACCT+TGG - chr4_2:59865259-59865278 Msa0611610:CDS 30.0%
AGACAACTAATGCTAAGAAA+AGG + chr4_2:59865351-59865370 None:intergenic 30.0%
! TTTTCTTAGCATTAGTTGTC+TGG - chr4_2:59865350-59865369 Msa0611610:CDS 30.0%
AGAAAGTAGAAACTATATGC+TGG - chr4_2:59865425-59865444 Msa0611610:CDS 30.0%
GAATAAGTTACTCCAAAGAT+TGG - chr4_2:59865490-59865509 Msa0611610:intron 30.0%
GTGAAATTAAGAATATGGGT+AGG - chr4_2:59865553-59865572 Msa0611610:intron 30.0%
AATTAAGAATATGGGTAGGT+TGG - chr4_2:59865557-59865576 Msa0611610:intron 30.0%
TGTTTAGTTGCTTCAATTTC+TGG - chr4_2:59865736-59865755 Msa0611610:intron 30.0%
ATATACTAATATGCTGTTGC+GGG + chr4_2:59865883-59865902 None:intergenic 30.0%
CATATACTAATATGCTGTTG+CGG + chr4_2:59865884-59865903 None:intergenic 30.0%
!!! TCCTTTTTTATTTTCCACCA+CGG + chr4_2:59865977-59865996 None:intergenic 30.0%
TGGTGGAAAATAAAAAAGGA+AGG - chr4_2:59865977-59865996 Msa0611610:CDS 30.0%
GGTGGAAAATAAAAAAGGAA+GGG - chr4_2:59865978-59865997 Msa0611610:CDS 30.0%
CTTGTAAGTTATATGTAGCT+TGG - chr4_2:59866276-59866295 Msa0611610:intron 30.0%
GTAACCAATAGATACTTAGT+TGG + chr4_2:59866357-59866376 None:intergenic 30.0%
TGAGTACAAATTTAATACGG+TGG + chr4_2:59866404-59866423 None:intergenic 30.0%
! CTGAAATAATTTGTACAGAC+AGG + chr4_2:59866895-59866914 None:intergenic 30.0%
CTGTCTGTACAAATTATTTC+AGG - chr4_2:59866893-59866912 Msa0611610:intron 30.0%
! TTGAAGTTGTGTATGTCTTT+TGG - chr4_2:59866961-59866980 Msa0611610:intron 30.0%
! TGAAGTTGTGTATGTCTTTT+GGG - chr4_2:59866962-59866981 Msa0611610:intron 30.0%
GTATGGAAAGCAATTATAGT+AGG + chr4_2:59866997-59867016 None:intergenic 30.0%
TCTGGACATATATATGATTC+TGG - chr4_2:59867188-59867207 Msa0611610:intron 30.0%
AAATCACTTGTAACATCTAG+TGG + chr4_2:59867215-59867234 None:intergenic 30.0%
! CTAGATGTTACAAGTGATTT+TGG - chr4_2:59867215-59867234 Msa0611610:intron 30.0%
CTGAAGACAACAATGAAATT+AGG + chr4_2:59867477-59867496 None:intergenic 30.0%
! CATTGTTGTCTTCAGAATTT+TGG - chr4_2:59867482-59867501 Msa0611610:intron 30.0%
! TTGTTGTCTTCAGAATTTTG+GGG - chr4_2:59867484-59867503 Msa0611610:intron 30.0%
TCCGAACATAAAATGAGAAA+TGG + chr4_2:59867512-59867531 None:intergenic 30.0%
ACCCATGTTAAATTATGTTC+TGG - chr4_2:59867650-59867669 Msa0611610:intron 30.0%
GCCAGAACATAATTTAACAT+GGG + chr4_2:59867654-59867673 None:intergenic 30.0%
TGCCAGAACATAATTTAACA+TGG + chr4_2:59867655-59867674 None:intergenic 30.0%
AATTAATTGCAACTTTCTGC+AGG + chr4_2:59867882-59867901 None:intergenic 30.0%
AACAACAATGATAGAGAATC+TGG - chr4_2:59867973-59867992 Msa0611610:intron 30.0%
ACAACAATGATAGAGAATCT+GGG - chr4_2:59867974-59867993 Msa0611610:intron 30.0%
! ATGTGAAATTTTGTGGGAAT+CGG - chr4_2:59868124-59868143 Msa0611610:intron 30.0%
ATGCGTTTAATTCCTCTAAA+AGG + chr4_2:59868171-59868190 None:intergenic 30.0%
TTTAGAGGAATTAAACGCAT+TGG - chr4_2:59868171-59868190 Msa0611610:intron 30.0%
TGATCACCTGTTTATATCTA+CGG + chr4_2:59868448-59868467 None:intergenic 30.0%
ATAATTGTTGTCACTCAGAA+AGG - chr4_2:59868474-59868493 Msa0611610:CDS 30.0%
TAATTGTTGTCACTCAGAAA+GGG - chr4_2:59868475-59868494 Msa0611610:CDS 30.0%
!!! CAATTTTTTAGCCTCAAACA+TGG + chr4_2:59868702-59868721 None:intergenic 30.0%
GTAAGAAAAGCAGAATATTC+CGG - chr4_2:59868743-59868762 Msa0611610:five_prime_UTR 30.0%
ACACGAATCCCTAAAACTAA+AGG - chr4_2:59864382-59864401 Msa0611610:three_prime_UTR 35.0%
!!! CCAAATTGGCCTTTAGTTTT+AGG + chr4_2:59864394-59864413 None:intergenic 35.0%
CCTAAAACTAAAGGCCAATT+TGG - chr4_2:59864391-59864410 Msa0611610:three_prime_UTR 35.0%
TAGACACTGGATATCCAAAT+TGG + chr4_2:59864408-59864427 None:intergenic 35.0%
!! AAACACGACACTGATTTCAA+AGG - chr4_2:59864728-59864747 Msa0611610:three_prime_UTR 35.0%
GAATCGTTGTAATCTTTGCT+TGG - chr4_2:59864750-59864769 Msa0611610:three_prime_UTR 35.0%
! AATTCCTGTAACAGGTTTTG+TGG + chr4_2:59864785-59864804 None:intergenic 35.0%
AAGAGAATTCCAACCTAAAG+AGG + chr4_2:59864822-59864841 None:intergenic 35.0%
CTAGAAAAGAGAAACTTACG+CGG + chr4_2:59864867-59864886 None:intergenic 35.0%
!! TTTTTCAATTTCGTTGGCCA+TGG - chr4_2:59864902-59864921 Msa0611610:three_prime_UTR 35.0%
TGGCCATGGAATAGAATTAT+TGG - chr4_2:59864916-59864935 Msa0611610:three_prime_UTR 35.0%
CCCAAAAACACTTAACTAGA+AGG + chr4_2:59865162-59865181 None:intergenic 35.0%
GTTATGTTTGCCTAACCATT+TGG - chr4_2:59865230-59865249 Msa0611610:CDS 35.0%
GTTGCTATAACCATTCCAAA+TGG + chr4_2:59865248-59865267 None:intergenic 35.0%
TTTGCGAGTTAATAGATAGG+TGG - chr4_2:59865401-59865420 Msa0611610:CDS 35.0%
CTAGTCTCTTACATTCCTAT+AGG + chr4_2:59865702-59865721 None:intergenic 35.0%
! ACCGTGGTGGAAAATAAAAA+AGG - chr4_2:59865973-59865992 Msa0611610:CDS 35.0%
!! GGGAATATTTTCTCTGGTTT+AGG + chr4_2:59866046-59866065 None:intergenic 35.0%
AAGTATACTGATAGGACACT+TGG + chr4_2:59866259-59866278 None:intergenic 35.0%
! TCACAATTTTCTCTTCATCC+AGG - chr4_2:59866469-59866488 Msa0611610:intron 35.0%
GACTATGACTATGACACTTA+GGG + chr4_2:59866777-59866796 None:intergenic 35.0%
TGACTATGACTATGACACTT+AGG + chr4_2:59866778-59866797 None:intergenic 35.0%
AGTGTCATAGTCATAGTCAT+AGG - chr4_2:59866779-59866798 Msa0611610:intron 35.0%
GAAAAAGAAGCAAACACAAC+AGG + chr4_2:59866858-59866877 None:intergenic 35.0%
! TGTTTGCTTCTTTTTCTGCT+GGG - chr4_2:59866862-59866881 Msa0611610:intron 35.0%
! GAAGTTGTGTATGTCTTTTG+GGG - chr4_2:59866963-59866982 Msa0611610:intron 35.0%
TTCACTAAGCTGCATTTGTA+TGG + chr4_2:59867014-59867033 None:intergenic 35.0%
ATACAAATGCAGCTTAGTGA+AGG - chr4_2:59867013-59867032 Msa0611610:intron 35.0%
! AATTGCATTACCAAGTTGAG+TGG + chr4_2:59867052-59867071 None:intergenic 35.0%
ATCAATCAAAGTAGAAAGCG+AGG + chr4_2:59867081-59867100 None:intergenic 35.0%
GCTTTCTACTTTGATTGATG+TGG - chr4_2:59867082-59867101 Msa0611610:intron 35.0%
AGCATGACTGTCAATTGTTT+AGG - chr4_2:59867156-59867175 Msa0611610:intron 35.0%
TTGTTTAGGAACTGTGTTTC+TGG - chr4_2:59867170-59867189 Msa0611610:intron 35.0%
! ACCATCAAAGCTTGTTTCTT+GGG - chr4_2:59867280-59867299 Msa0611610:intron 35.0%
AATCTCAATCAGCTGATCAT+TGG - chr4_2:59867354-59867373 Msa0611610:intron 35.0%
AGTAATCTATCTTGACCATC+TGG - chr4_2:59867401-59867420 Msa0611610:intron 35.0%
GAATGTTTAGTGCCATGTTT+CGG - chr4_2:59867423-59867442 Msa0611610:intron 35.0%
! TTTTCGTGAATACGTTGACA+CGG + chr4_2:59867791-59867810 None:intergenic 35.0%
ATACTTGAACGAGAAAGAAC+TGG - chr4_2:59867814-59867833 Msa0611610:intron 35.0%
!!! AGTTTTAGAAGAGTTGCAGT+GGG - chr4_2:59867910-59867929 Msa0611610:intron 35.0%
TGTGTTCCAAAGAATGTTGA+AGG - chr4_2:59868093-59868112 Msa0611610:intron 35.0%
TTCCAAAGAATGTTGAAGGT+TGG - chr4_2:59868097-59868116 Msa0611610:intron 35.0%
TCCAAAGAATGTTGAAGGTT+GGG - chr4_2:59868098-59868117 Msa0611610:intron 35.0%
! TGGGATGATGTGAAATTTTG+TGG - chr4_2:59868117-59868136 Msa0611610:intron 35.0%
! GGGATGATGTGAAATTTTGT+GGG - chr4_2:59868118-59868137 Msa0611610:intron 35.0%
! AAATTTTGTGGGAATCGGAA+TGG - chr4_2:59868129-59868148 Msa0611610:intron 35.0%
! AATTTTGTGGGAATCGGAAT+GGG - chr4_2:59868130-59868149 Msa0611610:intron 35.0%
! TCCTGAATTTTACGAGACAA+AGG - chr4_2:59868267-59868286 Msa0611610:intron 35.0%
TCCTTTGTCTCGTAAAATTC+AGG + chr4_2:59868271-59868290 None:intergenic 35.0%
! TGAATTTTACGAGACAAAGG+AGG - chr4_2:59868270-59868289 Msa0611610:intron 35.0%
!! ATAGATTTTGGTGCAACAGT+GGG - chr4_2:59868304-59868323 Msa0611610:intron 35.0%
TGATTGCCGTAGATATAAAC+AGG - chr4_2:59868439-59868458 Msa0611610:CDS 35.0%
AATTGTTGTCACTCAGAAAG+GGG - chr4_2:59868476-59868495 Msa0611610:CDS 35.0%
AAATGGAGAAAGATGTACTG+AGG - chr4_2:59868580-59868599 Msa0611610:five_prime_UTR 35.0%
!!! TTTTTGACAATTCTGAGGTG+AGG - chr4_2:59868617-59868636 Msa0611610:five_prime_UTR 35.0%
GAATAAATAGGCCATGTTTG+AGG - chr4_2:59868688-59868707 Msa0611610:five_prime_UTR 35.0%
!! GAGTTTGACAGAAGTTGATA+TGG - chr4_2:59868794-59868813 Msa0611610:five_prime_UTR 35.0%
AATTCACGTGTTTCGCTTAC+TGG - chr4_2:59864631-59864650 Msa0611610:three_prime_UTR 40.0%
ATTCACGTGTTTCGCTTACT+GGG - chr4_2:59864632-59864651 Msa0611610:three_prime_UTR 40.0%
AGTTCCACAAAACCTGTTAC+AGG - chr4_2:59864778-59864797 Msa0611610:three_prime_UTR 40.0%
GTTGACCTTTACTCCTCTTT+AGG - chr4_2:59864806-59864825 Msa0611610:three_prime_UTR 40.0%
ACCTTTACTCCTCTTTAGGT+TGG - chr4_2:59864810-59864829 Msa0611610:three_prime_UTR 40.0%
TCCAACCTAAAGAGGAGTAA+AGG + chr4_2:59864814-59864833 None:intergenic 40.0%
!! GGTTGATAGATTGATGGGTT+TGG - chr4_2:59864946-59864965 Msa0611610:three_prime_UTR 40.0%
TTTGCCTTAAGCTTGTGAGA+GGG - chr4_2:59865188-59865207 Msa0611610:CDS 40.0%
GTTTGCCTAACCATTTGGAA+TGG - chr4_2:59865235-59865254 Msa0611610:CDS 40.0%
! AACATGCAAAGCATCATCCA+AGG + chr4_2:59865279-59865298 None:intergenic 40.0%
TCAAACGTTTGATCGTATGC+TGG - chr4_2:59865323-59865342 Msa0611610:CDS 40.0%
AAGTTACTCCAAAGATTGGG+TGG - chr4_2:59865494-59865513 Msa0611610:intron 40.0%
AGTTACTCCAAAGATTGGGT+GGG - chr4_2:59865495-59865514 Msa0611610:intron 40.0%
TTACTAACCCACCCAATCTT+TGG + chr4_2:59865505-59865524 None:intergenic 40.0%
TGAATCTTGTAAGACAGCCA+TGG - chr4_2:59865631-59865650 Msa0611610:CDS 40.0%
GTTAGAAGTTCTCGAAACTC+TGG + chr4_2:59866009-59866028 None:intergenic 40.0%
! GGTTAGGGGAATATTTTCTC+TGG + chr4_2:59866052-59866071 None:intergenic 40.0%
AGAGGATGAGTTAGTTAGTG+AGG + chr4_2:59866140-59866159 None:intergenic 40.0%
CACGAAGGGAAAAAAATGTG+GGG + chr4_2:59866171-59866190 None:intergenic 40.0%
GCACGAAGGGAAAAAAATGT+GGG + chr4_2:59866172-59866191 None:intergenic 40.0%
TGCACGAAGGGAAAAAAATG+TGG + chr4_2:59866173-59866192 None:intergenic 40.0%
TTGTACTCACCTTGACTCAT+TGG - chr4_2:59866415-59866434 Msa0611610:intron 40.0%
TACACCAAACCAATGAGTCA+AGG + chr4_2:59866427-59866446 None:intergenic 40.0%
!! GGTTTGGTGTACAATACTGA+TGG - chr4_2:59866436-59866455 Msa0611610:intron 40.0%
AAAATGCTAACAAGCACCCT+TGG - chr4_2:59866619-59866638 Msa0611610:intron 40.0%
AAATGCTAACAAGCACCCTT+GGG - chr4_2:59866620-59866639 Msa0611610:intron 40.0%
! GTGTTTGCTTCTTTTTCTGC+TGG - chr4_2:59866861-59866880 Msa0611610:intron 40.0%
! TGATGTGGTTTTCTACATCG+CGG - chr4_2:59867097-59867116 Msa0611610:intron 40.0%
! AGAAACAAGCTTTGATGGTC+CGG + chr4_2:59867279-59867298 None:intergenic 40.0%
! GACCATCAAAGCTTGTTTCT+TGG - chr4_2:59867279-59867298 Msa0611610:intron 40.0%
! ACCCAAGAAACAAGCTTTGA+TGG + chr4_2:59867284-59867303 None:intergenic 40.0%
AAAGTCTGTTGCATCTGGTT+TGG - chr4_2:59867307-59867326 Msa0611610:intron 40.0%
ATGGCACTAAACATTCCAGA+TGG + chr4_2:59867419-59867438 None:intergenic 40.0%
TGTGAGCCATTTATTGGAGA+AGG - chr4_2:59867765-59867784 Msa0611610:intron 40.0%
! CGAGAAAGAACTGGTATTGA+TGG - chr4_2:59867823-59867842 Msa0611610:intron 40.0%
!!! GAGTTTTAGAAGAGTTGCAG+TGG - chr4_2:59867909-59867928 Msa0611610:intron 40.0%
CTGAACTAGGCAAAAAGAAG+TGG + chr4_2:59867945-59867964 None:intergenic 40.0%
! TTCTTTTTGCCTAGTTCAGC+AGG - chr4_2:59867946-59867965 Msa0611610:intron 40.0%
TTGTTATGTCCTGCTGAACT+AGG + chr4_2:59867958-59867977 None:intergenic 40.0%
! ATAGAGAATCTGGGATTCCA+CGG - chr4_2:59867983-59868002 Msa0611610:intron 40.0%
CGTCAAAAAGAAATTGCCCA+AGG + chr4_2:59868071-59868090 None:intergenic 40.0%
TCCCAACCTTCAACATTCTT+TGG + chr4_2:59868102-59868121 None:intergenic 40.0%
!! GATAGATTTTGGTGCAACAG+TGG - chr4_2:59868303-59868322 Msa0611610:intron 40.0%
GGTTGCGATGATTCAACTAT+CGG - chr4_2:59868358-59868377 Msa0611610:CDS 40.0%
GTTGCGATGATTCAACTATC+GGG - chr4_2:59868359-59868378 Msa0611610:CDS 40.0%
ATTGTTGTCACTCAGAAAGG+GGG - chr4_2:59868477-59868496 Msa0611610:CDS 40.0%
AACTGGGTGATGTTTGACTA+AGG - chr4_2:59868527-59868546 Msa0611610:five_prime_UTR 40.0%
!! ACAGAAGTTGATATGGCGTA+CGG - chr4_2:59868801-59868820 Msa0611610:five_prime_UTR 40.0%
TCTCATATCATCGCTATGCG+TGG - chr4_2:59864659-59864678 Msa0611610:three_prime_UTR 45.0%
GGTCAACGAATTCCTGTAAC+AGG + chr4_2:59864793-59864812 None:intergenic 45.0%
!! GATGGGTTTGGTGTTACTTG+TGG - chr4_2:59864958-59864977 Msa0611610:three_prime_UTR 45.0%
!! GGTTTGGTGTTACTTGTGGA+TGG - chr4_2:59864962-59864981 Msa0611610:three_prime_UTR 45.0%
CTTTGCCTTAAGCTTGTGAG+AGG - chr4_2:59865187-59865206 Msa0611610:CDS 45.0%
TTGCCTTAAGCTTGTGAGAG+GGG - chr4_2:59865189-59865208 Msa0611610:CDS 45.0%
! AACTATATGCTGGTCTGCTC+TGG - chr4_2:59865435-59865454 Msa0611610:CDS 45.0%
! AGAATATGGGTAGGTTGGAG+AGG - chr4_2:59865562-59865581 Msa0611610:CDS 45.0%
AAGTGTTCCAGCTGAATCCA+TGG + chr4_2:59865651-59865670 None:intergenic 45.0%
!! GGTTTAGGAGCATTTAGCTC+TGG + chr4_2:59866031-59866050 None:intergenic 45.0%
TGTGCACCAATCTCATGTGA+GGG + chr4_2:59866117-59866136 None:intergenic 45.0%
GAAAAAAATGTGGGGCAAGG+GGG + chr4_2:59866163-59866182 None:intergenic 45.0%
GGAAAAAAATGTGGGGCAAG+GGG + chr4_2:59866164-59866183 None:intergenic 45.0%
GGGAAAAAAATGTGGGGCAA+GGG + chr4_2:59866165-59866184 None:intergenic 45.0%
AGGGAAAAAAATGTGGGGCA+AGG + chr4_2:59866166-59866185 None:intergenic 45.0%
! TTCTGGAAGGTTTGCACGAA+GGG + chr4_2:59866185-59866204 None:intergenic 45.0%
CTTAGCTCACCATGGGATAT+AGG - chr4_2:59866232-59866251 Msa0611610:intron 45.0%
ACACTTGGACCTATATCCCA+TGG + chr4_2:59866244-59866263 None:intergenic 45.0%
! CTCACCTTGACTCATTGGTT+TGG - chr4_2:59866420-59866439 Msa0611610:intron 45.0%
CTCTTCATCCAGGTTCAATG+AGG - chr4_2:59866479-59866498 Msa0611610:intron 45.0%
CAGGTTCAATGAGGAAAGTG+CGG - chr4_2:59866488-59866507 Msa0611610:intron 45.0%
AATGCTAACAAGCACCCTTG+GGG - chr4_2:59866621-59866640 Msa0611610:intron 45.0%
CTTCTAAACAAGTGCCCCAA+GGG + chr4_2:59866638-59866657 None:intergenic 45.0%
ACTTCTAAACAAGTGCCCCA+AGG + chr4_2:59866639-59866658 None:intergenic 45.0%
! AAGATTGCTTTGGGTTACGC+AGG - chr4_2:59866812-59866831 Msa0611610:intron 45.0%
GAAGCAAACACAACAGGACA+TGG + chr4_2:59866852-59866871 None:intergenic 45.0%
! TGGAAGGGTGTAGAGAAAAG+CGG + chr4_2:59867244-59867263 None:intergenic 45.0%
! GAAACAAGCTTTGATGGTCC+GGG + chr4_2:59867278-59867297 None:intergenic 45.0%
GTAGCAAAGTCTGTTGCATC+TGG - chr4_2:59867302-59867321 Msa0611610:intron 45.0%
TCAATCAGCTGATCATTGGC+AGG - chr4_2:59867358-59867377 Msa0611610:intron 45.0%
ACAGCAGCTCTGTATTGGAT+TGG + chr4_2:59867748-59867767 None:intergenic 45.0%
AGCTGCTGTGAGCCATTTAT+TGG - chr4_2:59867759-59867778 Msa0611610:intron 45.0%
ACACGGCCTTCTCCAATAAA+TGG + chr4_2:59867774-59867793 None:intergenic 45.0%
GGCAAAAAGAAGTGGTCACT+TGG + chr4_2:59867937-59867956 None:intergenic 45.0%
! TAGAGAATCTGGGATTCCAC+GGG - chr4_2:59867984-59868003 Msa0611610:intron 45.0%
! TCACGTGTGTCACCTTTTAG+AGG - chr4_2:59868156-59868175 Msa0611610:intron 45.0%
! TTAAACGCATTGGTCGCTCT+AGG - chr4_2:59868181-59868200 Msa0611610:intron 45.0%
CACTGCCACATACGATACAA+CGG + chr4_2:59868334-59868353 None:intergenic 45.0%
TATCGTATGTGGCAGTGCAA+TGG - chr4_2:59868337-59868356 Msa0611610:CDS 45.0%
TTGTTGTCACTCAGAAAGGG+GGG - chr4_2:59868478-59868497 Msa0611610:CDS 45.0%
GACTAAGGTAACTACTCCCT+AGG - chr4_2:59868542-59868561 Msa0611610:five_prime_UTR 45.0%
ATCGCTATGCGTGGAGTTGA+AGG - chr4_2:59864668-59864687 Msa0611610:three_prime_UTR 50.0%
GTAGATGTTACCGCCTCGTA+CGG + chr4_2:59864699-59864718 None:intergenic 50.0%
TACGAGGCGGTAACATCTAC+TGG - chr4_2:59864699-59864718 Msa0611610:three_prime_UTR 50.0%
ACGAGGCGGTAACATCTACT+GGG - chr4_2:59864700-59864719 Msa0611610:three_prime_UTR 50.0%
TCTGCTCTGGCAACTTGAAC+AGG - chr4_2:59865448-59865467 Msa0611610:CDS 50.0%
CTGCTCTGGCAACTTGAACA+GGG - chr4_2:59865449-59865468 Msa0611610:CDS 50.0%
TGCTCTGGCAACTTGAACAG+GGG - chr4_2:59865450-59865469 Msa0611610:CDS 50.0%
AAGACAGCCATGGATTCAGC+TGG - chr4_2:59865641-59865660 Msa0611610:CDS 50.0%
GGATTCAGCTGGAACACTTG+TGG - chr4_2:59865652-59865671 Msa0611610:CDS 50.0%
TTCAGCTGGAACACTTGTGG+AGG - chr4_2:59865655-59865674 Msa0611610:CDS 50.0%
TCAGCTGGAACACTTGTGGA+GGG - chr4_2:59865656-59865675 Msa0611610:CDS 50.0%
CAATCTCATGTGAGGGGGTT+GGG + chr4_2:59866110-59866129 None:intergenic 50.0%
TGCACCAATCTCATGTGAGG+GGG + chr4_2:59866115-59866134 None:intergenic 50.0%
GTGCACCAATCTCATGTGAG+GGG + chr4_2:59866116-59866135 None:intergenic 50.0%
GTGTGCACCAATCTCATGTG+AGG + chr4_2:59866118-59866137 None:intergenic 50.0%
! CTTCTGGAAGGTTTGCACGA+AGG + chr4_2:59866186-59866205 None:intergenic 50.0%
CCATGGTGAGCTAAGCAATG+GGG + chr4_2:59866227-59866246 None:intergenic 50.0%
CCCATGGTGAGCTAAGCAAT+GGG + chr4_2:59866228-59866247 None:intergenic 50.0%
CCCATTGCTTAGCTCACCAT+GGG - chr4_2:59866225-59866244 Msa0611610:intron 50.0%
TCCCATGGTGAGCTAAGCAA+TGG + chr4_2:59866229-59866248 None:intergenic 50.0%
CGCACTTTCCTCATTGAACC+TGG + chr4_2:59866490-59866509 None:intergenic 50.0%
! TTTGGGTTACGCAGGTGCTA+AGG - chr4_2:59866820-59866839 Msa0611610:intron 50.0%
TTACGCAGGTGCTAAGGACT+AGG - chr4_2:59866826-59866845 Msa0611610:intron 50.0%
ATGCACAGCTCCACTCAACT+TGG - chr4_2:59867039-59867058 Msa0611610:intron 50.0%
TTTCTACATCGCGGCCATTG+TGG - chr4_2:59867106-59867125 Msa0611610:intron 50.0%
! CGGGCACTTTTGCAATGGAA+GGG + chr4_2:59867259-59867278 None:intergenic 50.0%
!! CCTTCCATTGCAAAAGTGCC+CGG - chr4_2:59867257-59867276 Msa0611610:intron 50.0%
CTGAGAAGCTCATCTCACGT+TGG - chr4_2:59867617-59867636 Msa0611610:intron 50.0%
TCTTCTTTCTGTTCGTCCCG+TGG + chr4_2:59868003-59868022 None:intergenic 50.0%
! TGGGAAGCTAGGAGCACAAA+CGG + chr4_2:59868028-59868047 None:intergenic 50.0%
TTTGTGGGAATCGGAATGGG+AGG - chr4_2:59868133-59868152 Msa0611610:intron 50.0%
!! ATTTTGGTGCAACAGTGGGC+CGG - chr4_2:59868308-59868327 Msa0611610:intron 50.0%
GGGTGATGCTGAGTAGACAC+TGG + chr4_2:59864421-59864440 None:intergenic 55.0%
GTTGAAGGTTGTGCCGTACG+AGG - chr4_2:59864683-59864702 Msa0611610:three_prime_UTR 55.0%
CGAGGCGGTAACATCTACTG+GGG - chr4_2:59864701-59864720 Msa0611610:three_prime_UTR 55.0%
GCTCCCCTCTCACAAGCTTA+AGG + chr4_2:59865195-59865214 None:intergenic 55.0%
TGAGCTCAAGAGCTCTACCG+TGG - chr4_2:59865957-59865976 Msa0611610:CDS 55.0%
!! AGGGGGTTGGGTAGTGGAAA+GGG + chr4_2:59866098-59866117 None:intergenic 55.0%
CCAATCTCATGTGAGGGGGT+TGG + chr4_2:59866111-59866130 None:intergenic 55.0%
CCAACCCCCTCACATGAGAT+TGG - chr4_2:59866108-59866127 Msa0611610:intron 55.0%
CGTGCAAACCTTCCAGAAGC+TGG - chr4_2:59866187-59866206 Msa0611610:intron 55.0%
CCCCATTGCTTAGCTCACCA+TGG - chr4_2:59866224-59866243 Msa0611610:intron 55.0%
!! TGAGGAAAGTGCGGTGCCAT+TGG - chr4_2:59866497-59866516 Msa0611610:intron 55.0%
! CCGGGCACTTTTGCAATGGA+AGG + chr4_2:59867260-59867279 None:intergenic 55.0%
! TGGTCCGGGCACTTTTGCAA+TGG + chr4_2:59867264-59867283 None:intergenic 55.0%
GGCTCACAGCAGCTCTGTAT+TGG + chr4_2:59867753-59867772 None:intergenic 55.0%
! GGGAAGCTAGGAGCACAAAC+GGG + chr4_2:59868027-59868046 None:intergenic 55.0%
GCCACATACGATACAACGGC+CGG + chr4_2:59868330-59868349 None:intergenic 55.0%
TTGTCACTCAGAAAGGGGGG+TGG - chr4_2:59868481-59868500 Msa0611610:CDS 55.0%
GAAGGTTGTGCCGTACGAGG+CGG - chr4_2:59864686-59864705 Msa0611610:three_prime_UTR 60.0%
GCTCAAGAGCTCTACCGTGG+TGG - chr4_2:59865960-59865979 Msa0611610:CDS 60.0%
!! GGGGGTTGGGTAGTGGAAAG+GGG + chr4_2:59866097-59866116 None:intergenic 60.0%
!! GAGGGGGTTGGGTAGTGGAA+AGG + chr4_2:59866099-59866118 None:intergenic 60.0%
CATGTGAGGGGGTTGGGTAG+TGG + chr4_2:59866104-59866123 None:intergenic 60.0%
AAATGTGGGGCAAGGGGGAG+AGG + chr4_2:59866158-59866177 None:intergenic 60.0%
AGCACGAGCCAGCTTCTGGA+AGG + chr4_2:59866198-59866217 None:intergenic 60.0%
!! TTCCAGAAGCTGGCTCGTGC+TGG - chr4_2:59866197-59866216 Msa0611610:intron 60.0%
AACCAGCACGAGCCAGCTTC+TGG + chr4_2:59866202-59866221 None:intergenic 60.0%
! GCGCTGATGCTTGGGAAGCT+AGG + chr4_2:59868039-59868058 None:intergenic 60.0%
!! CGCTGTGAGCGCTGATGCTT+GGG + chr4_2:59868047-59868066 None:intergenic 60.0%
!! ACGCTGTGAGCGCTGATGCT+TGG + chr4_2:59868048-59868067 None:intergenic 60.0%
ATCAGCGCTCACAGCGTCCT+TGG - chr4_2:59868051-59868070 Msa0611610:intron 60.0%
TCAGCGCTCACAGCGTCCTT+GGG - chr4_2:59868052-59868071 Msa0611610:intron 60.0%
GCCGGCCGTTGTATCGTATG+TGG - chr4_2:59868326-59868345 Msa0611610:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59864374 59868826 59864374 ID=Msa0611610;Name=Msa0611610
chr4_2 mRNA 59864374 59868826 59864374 ID=Msa0611610-mRNA-1;Parent=Msa0611610;Name=Msa0611610-mRNA-1;_AED=0.20;_eAED=0.20;_QI=300|1|1|1|1|1|7|617|410
chr4_2 exon 59864374 59865472 59864374 ID=Msa0611610-mRNA-1:exon:15997;Parent=Msa0611610-mRNA-1
chr4_2 exon 59865562 59865703 59865562 ID=Msa0611610-mRNA-1:exon:15996;Parent=Msa0611610-mRNA-1
chr4_2 exon 59865803 59866042 59865803 ID=Msa0611610-mRNA-1:exon:15995;Parent=Msa0611610-mRNA-1
chr4_2 exon 59866140 59866175 59866140 ID=Msa0611610-mRNA-1:exon:15994;Parent=Msa0611610-mRNA-1
chr4_2 exon 59866286 59866366 59866286 ID=Msa0611610-mRNA-1:exon:15993;Parent=Msa0611610-mRNA-1
chr4_2 exon 59866652 59866709 59866652 ID=Msa0611610-mRNA-1:exon:15992;Parent=Msa0611610-mRNA-1
chr4_2 exon 59868333 59868826 59868333 ID=Msa0611610-mRNA-1:exon:15991;Parent=Msa0611610-mRNA-1
chr4_2 five_prime_UTR 59868527 59868826 59868527 ID=Msa0611610-mRNA-1:five_prime_utr;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59868333 59868526 59868333 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59866652 59866709 59866652 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59866286 59866366 59866286 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59866140 59866175 59866140 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59865803 59866042 59865803 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59865562 59865703 59865562 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 CDS 59864991 59865472 59864991 ID=Msa0611610-mRNA-1:cds;Parent=Msa0611610-mRNA-1
chr4_2 three_prime_UTR 59864374 59864990 59864374 ID=Msa0611610-mRNA-1:three_prime_utr;Parent=Msa0611610-mRNA-1
Gene Sequence

>Msa0611610

ATGCGTGGAGTTGAAGGTTGTGCCGTACGAGGCGGTAACATCTACTGGGGAAGAAAACACGACACTGATTTCAAAGGAATCGTTGTAATCTTTGCTTGGGTTTCAGTTCCACAAAACCTGTTACAGGAATTCGTTGACCTTTACTCCTCTTTAGGTTGGAATTCTCTTGTTTGTTATGCTCATTATCTATCCGCGTTCAATGAGGAAAGTGCGGTGCCATTGGCATTTTATGTTTTTGATGAACTTATTGAGGTGCTAAGGACTAGGCCATGTCCTGTTGTGTTTGCTTCTTTTTCTGCTGGGTCGAAAGCCTGTCTGTACAAATTATTTCAGCTTAGTGAAGGAAGATGCACAGCTCCACTCAACTTGCATGACTGTCAATTGTTTAGGAACTGTGTTTCTGGACATATATATGATTCTGGTCCACTAGATGTTACAAGTGATTTTGGCTTCCGCTTTTCTCTACACCCTTCCATTGCAAAAGTGCCCGGACCATCAAAGCTTGTTTCTTGGGTAGCAAAGTCTGTTGCATCTGGTTTGGATGCTTTATACTTGACTAGATTTGAATCTCAATCAGCTGATCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGGGCTCCATTTCTCATTTTATGTTCGGAGAATGATGAACTTGTGAGATATCAAAGTATCTATGATTTTGCTCAACGATTACGCAATCTCAACGCTGATGTCAATCTTGTAAATCTGAGAAGCTCATCTCACGTTGGTCATTATGAACATCATCCAATCCAATACAGAGCTGCTGTGAGCCATTTATTGGAGAAGGCCGTGTCAACGTATTCACGAAAAGTTATACTTGAACGAGAAAGAACTGGTATTGATGGTACGCACGACGAGATATCTGAGTTAATCTGTGACCTGCAGAAAGTTGCAATTAATTCAAATGAGAGTTTTAGAAGAGTTGCAGTGGGACCAAGTGACCACTTCTTTTTGCCTAGTTCAGCAGGACATAACAACAATGATAGAGAATCTGGGATTCCACGGGACGAACAGAAAGAAGAACCCGTTTGTGCTCCTAGCTTCCCAAGCATCAGCGCTCACAGCGTCCTTGGGCAATTTCTTTTTGACGTTTGTGTTCCAAAGAATGTTGAAGGTTGGGATGATGTGAAATTTTGTGGGAATCGGAATGGGAGGTCACGTGTGTCACCTTTTAGAGGAATTAAACGCATTGGTCGCTCTAGGTTATGA
Protein sequence

>Msa0611610

MRGVEGCAVRGGNIYWGRKHDTDFKGIVVIFAWVSVPQNLLQEFVDLYSSLGWNSLVCYAHYLSAFNEESAVPLAFYVFDELIEVLRTRPCPVVFASFSAGSKACLYKLFQLSEGRCTAPLNLHDCQLFRNCVSGHIYDSGPLDVTSDFGFRFSLHPSIAKVPGPSKLVSWVAKSVASGLDALYLTRFESQSADHWQALYSSVNFGAPFLILCSENDELVRYQSIYDFAQRLRNLNADVNLVNLRSSSHVGHYEHHPIQYRAAVSHLLEKAVSTYSRKVILERERTGIDGTHDEISELICDLQKVAINSNESFRRVAVGPSDHFFLPSSAGHNNNDRESGIPRDEQKEEPVCAPSFPSISAHSVLGQFLFDVCVPKNVEGWDDVKFCGNRNGRSRVSPFRGIKRIGRSRL*