AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983800 MtrunA17_Chr4g0045091 92.439 410 4 1 1 383 1 410 0.0 766
Msa0983800 MtrunA17_Chr3g0133761 44.938 405 188 7 11 383 5 406 6.97e-110 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983800 AT2G15695.1 51.064 423 155 8 9 383 2 420 5.17e-136 395
Msa0983800 AT5G44250.1 42.611 406 193 10 11 383 5 403 4.11e-101 305
Msa0983800 AT5G44250.2 45.277 307 157 7 81 383 3 302 3.81e-84 258

Find 114 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTGTCTTCAGAATTT+TGG 0.059999 6_4:-27077890 Msa0983800:intron
CTAGATGTTACAAGTGATTT+TGG 0.148183 6_4:-27078157 Msa0983800:CDS
TTGTTTAGGAACTGTGTTTC+TGG 0.150597 6_4:-27078202 Msa0983800:CDS
AGCTGCTGTGAGCCATTTAT+TGG 0.192871 6_4:-27077613 Msa0983800:CDS
AATTCACGTGTTTCGCTTAC+TGG 0.198836 6_4:-27080766 Msa0983800:five_prime_UTR
CCTAAAACTAAAGGCCAATT+TGG 0.228837 6_4:-27081001 Msa0983800:five_prime_UTR
TCCCAACCTTCAACATTCTT+TGG 0.240471 6_4:+27077273 None:intergenic
ATGCGTTTAATTCCTCTAAA+AGG 0.247530 6_4:+27077204 None:intergenic
GTTGACCTTTACTCCTCTTT+AGG 0.255986 6_4:-27080591 Msa0983800:CDS
GATATGAATATGATAGATTT+TGG 0.260174 6_4:-27077080 Msa0983800:three_prime_UTR
ACTTACTGTTAGAAATAAAC+TGG 0.276365 6_4:-27076862 Msa0983800:three_prime_UTR
TCCTTTGTCTCGTAAAATTC+AGG 0.280019 6_4:+27077104 None:intergenic
TCTGGACATATATATGATTC+TGG 0.283472 6_4:-27078184 Msa0983800:CDS
CGCTGTGAGCGCTGATGCTT+GGG 0.291912 6_4:+27077328 None:intergenic
AACAACAATGATAGAGAATC+TGG 0.310572 6_4:-27077399 Msa0983800:CDS
AGTTCCACAAAACCTGTTAC+AGG 0.311517 6_4:-27080619 Msa0983800:CDS
ATATATTTGTGGGAATAAAT+AGG 0.316543 6_4:-27076696 Msa0983800:three_prime_UTR
GACCATCAAAGCTTGTTTCT+TGG 0.325748 6_4:-27078093 Msa0983800:CDS
GTTGAATTTGAAGATTGATA+TGG 0.338521 6_4:-27076984 Msa0983800:three_prime_UTR
GGTCAACGAATTCCTGTAAC+AGG 0.339829 6_4:+27080607 None:intergenic
AATAAGAATGAATAATAAAA+TGG 0.342130 6_4:+27080943 None:intergenic
GGTAATATAATTGTTTGAAA+TGG 0.347177 6_4:-27076809 Msa0983800:three_prime_UTR
ACACGGCCTTCTCCAATAAA+TGG 0.355167 6_4:+27077601 None:intergenic
AGCATGACTGTCAATTGTTT+AGG 0.377794 6_4:-27078216 Msa0983800:CDS
ATCAGCGCTCACAGCGTCCT+TGG 0.388256 6_4:-27077321 Msa0983800:CDS
GAGTTTGACAGAAGTTGATA+TGG 0.397401 6_4:-27076578 Msa0983800:three_prime_UTR
ACCATCAAAGCTTGTTTCTT+GGG 0.398334 6_4:-27078092 Msa0983800:CDS
TCCGAACATAAAATGAGAAA+TGG 0.399424 6_4:+27077863 None:intergenic
GTAGCAAAGTCTGTTGCATC+TGG 0.399698 6_4:-27078070 Msa0983800:CDS
TAGACACTGGATATCCAAAT+TGG 0.403204 6_4:+27080987 None:intergenic
ACCCAAGAAACAAGCTTTGA+TGG 0.403500 6_4:+27078091 None:intergenic
GGCTCACAGCAGCTCTGTAT+TGG 0.405682 6_4:+27077622 None:intergenic
AATCTCAATCAGCTGATCAT+TGG 0.409867 6_4:-27078018 Msa0983800:CDS
GCCGGCCGTTGTATCGTATC+TGG 0.415002 6_4:-27077046 Msa0983800:three_prime_UTR
ACCTTTACTCCTCTTTAGGT+TGG 0.415566 6_4:-27080587 Msa0983800:CDS
CGAGAAAGAACTGGTATTGA+TGG 0.422478 6_4:-27077549 Msa0983800:CDS
GTAAGAAAAGCAGAATATTC+CGG 0.423883 6_4:-27076629 Msa0983800:three_prime_UTR
GAATCGTTGTAATCTTTGCT+TGG 0.425804 6_4:-27080647 Msa0983800:CDS
TGATTGCCGTAGATATAAAC+AGG 0.428325 6_4:-27076933 Msa0983800:three_prime_UTR
AGAAACAAGCTTTGATGGTC+CGG 0.428964 6_4:+27078096 None:intergenic
AATCGTTGTAATCTTTGCTT+GGG 0.431280 6_4:-27080646 Msa0983800:CDS
ACGCTGTGAGCGCTGATGCT+TGG 0.436180 6_4:+27077327 None:intergenic
TCAGCGCTCACAGCGTCCTT+GGG 0.444207 6_4:-27077320 Msa0983800:CDS
TACGAGGCGGTAACATCTAC+TGG 0.455529 6_4:-27080698 Msa0983800:CDS
ATCGCTATGCGTGGAGTTGA+AGG 0.456928 6_4:-27080729 Msa0983800:exon
TGAGGAAAGTGCGGTGCCAT+TGG 0.467523 6_4:-27078869 Msa0983800:CDS
AATTAATTGCAACTTTCTGC+AGG 0.468910 6_4:+27077493 None:intergenic
TGATCACCTGTTTATATCTA+CGG 0.470526 6_4:+27076927 None:intergenic
ATAATTGTTGTCACTCAGAA+AGG 0.471723 6_4:-27076898 Msa0983800:three_prime_UTR
TGGGAAGCTAGGAGCACAAA+CGG 0.476633 6_4:+27077347 None:intergenic
TTGTGTCTGTATATATTTGT+GGG 0.477753 6_4:-27076706 Msa0983800:three_prime_UTR
TTGTTATGTCCTGCTGAACT+AGG 0.479809 6_4:+27077417 None:intergenic
TAACAGTGATGGCTTTGAAT+CGG 0.486402 6_4:+27080846 None:intergenic
TCCAAAGAATGTTGAAGGTT+GGG 0.486461 6_4:-27077274 Msa0983800:CDS
AAGAGAATTCCAACCTAAAG+AGG 0.487518 6_4:+27080578 None:intergenic
AAAGTCTGTTGCATCTGGTT+TGG 0.487705 6_4:-27078065 Msa0983800:CDS
GGTTGCGATGATTCAACTAT+CGG 0.504787 6_4:-27077014 Msa0983800:three_prime_UTR
TGTGTTCCAAAGAATGTTGA+AGG 0.505151 6_4:-27077279 Msa0983800:CDS
TCTTCTTTCTGTTCGTCCCG+TGG 0.505476 6_4:+27077372 None:intergenic
TAATTGTTGTCACTCAGAAA+GGG 0.506377 6_4:-27076897 Msa0983800:three_prime_UTR
TTTAGAGGAATTAAACGCAT+TGG 0.506775 6_4:-27077201 Msa0983800:CDS
ATTCACGTGTTTCGCTTACT+GGG 0.507630 6_4:-27080765 Msa0983800:five_prime_UTR
TCCAACCTAAAGAGGAGTAA+AGG 0.510951 6_4:+27080586 None:intergenic
AATAATAAAATGGTGGGTGA+TGG 0.512020 6_4:+27080953 None:intergenic
ACAGCAGCTCTGTATTGGAT+TGG 0.516355 6_4:+27077627 None:intergenic
ATACTTGAACGAGAAAGAAC+TGG 0.518031 6_4:-27077558 Msa0983800:CDS
GAAACAAGCTTTGATGGTCC+GGG 0.522040 6_4:+27078097 None:intergenic
AAAACACTCCCTAAAACTAA+AGG 0.522198 6_4:-27081010 Msa0983800:five_prime_UTR
AAATCACTTGTAACATCTAG+TGG 0.525521 6_4:+27078160 None:intergenic
ATGCACAGCTCCACTCAACT+TGG 0.526381 6_4:-27078333 Msa0983800:intron
TCAATCAGCTGATCATTGGC+AGG 0.527299 6_4:-27078014 Msa0983800:CDS
AAGAATGAATAATAAAATGG+TGG 0.527859 6_4:+27080946 None:intergenic
TCAAACAATTATATTACCTA+GGG 0.531119 6_4:+27076814 None:intergenic
GCGCTGATGCTTGGGAAGCT+AGG 0.531134 6_4:+27077336 None:intergenic
TTTGTGTCTGTATATATTTG+TGG 0.536831 6_4:-27076707 Msa0983800:three_prime_UTR
AACTGGGTGATGTTTGACTA+AGG 0.537810 6_4:-27076845 Msa0983800:three_prime_UTR
CTCTTCATCCAGGTTCAATG+AGG 0.542042 6_4:-27078887 Msa0983800:intron
CCTTCCATTGCAAAAGTGCC+CGG 0.550129 6_4:-27078115 Msa0983800:CDS
GTTGCGATGATTCAACTATC+GGG 0.555172 6_4:-27077013 Msa0983800:three_prime_UTR
TTCCAAAGAATGTTGAAGGT+TGG 0.557791 6_4:-27077275 Msa0983800:CDS
TGTGAGCCATTTATTGGAGA+AGG 0.562192 6_4:-27077607 Msa0983800:CDS
GCCAGATACGATACAACGGC+CGG 0.565479 6_4:+27077045 None:intergenic
TTCAAACAATTATATTACCT+AGG 0.572767 6_4:+27076813 None:intergenic
AATTGCATTACCAAGTTGAG+TGG 0.572964 6_4:+27078323 None:intergenic
CAATCAGAAAATAACAGTGA+TGG 0.574090 6_4:+27080835 None:intergenic
GGGAAGCTAGGAGCACAAAC+GGG 0.575953 6_4:+27077348 None:intergenic
GAATAAATAGGCCATGTTTG+AGG 0.576240 6_4:-27076684 Msa0983800:three_prime_UTR
AGAATGAATAATAAAATGGT+GGG 0.578892 6_4:+27080947 None:intergenic
ATAGAGAATCTGGGATTCCA+CGG 0.590079 6_4:-27077389 Msa0983800:CDS
TTAAACGCATTGGTCGCTCT+AGG 0.593892 6_4:-27077191 Msa0983800:CDS
ACAGAAGTTGATATGGCGTA+TGG 0.600105 6_4:-27076571 Msa0983800:three_prime_UTR
TTGTCACTCAGAAAGGGGAG+TGG 0.607190 6_4:-27076891 Msa0983800:three_prime_UTR
ATACAAATGCAGCTTAGTGA+AGG 0.607255 6_4:-27078359 Msa0983800:intron
ACGAGGCGGTAACATCTACT+GGG 0.608927 6_4:-27080697 Msa0983800:CDS
AAACACGACACTGATTTCAA+AGG 0.610001 6_4:-27080669 Msa0983800:CDS
ACAACAATGATAGAGAATCT+GGG 0.610595 6_4:-27077398 Msa0983800:CDS
AATTGTTGTCACTCAGAAAG+GGG 0.610604 6_4:-27076896 Msa0983800:three_prime_UTR
GTTGAAGGTTGTGCCGTACG+AGG 0.611614 6_4:-27080714 Msa0983800:CDS
ATAATAAAATGGTGGGTGAT+GGG 0.612121 6_4:+27080954 None:intergenic
TCTCATATCATCGCTATGCG+TGG 0.615765 6_4:-27080738 Msa0983800:exon
TATCGTATCTGGCAGTGCAA+TGG 0.622553 6_4:-27077035 Msa0983800:three_prime_UTR
GTAGATGTTACCGCCTCGTA+CGG 0.628127 6_4:+27080701 None:intergenic
TTTGTGGGAATCGGAATGGG+AGG 0.631152 6_4:-27077239 Msa0983800:CDS
TAGAGAATCTGGGATTCCAC+GGG 0.635772 6_4:-27077388 Msa0983800:CDS
AATCAAACAAAGTAAAACAC+CGG 0.640359 6_4:+27076610 None:intergenic
GACTAAGGTAACTACTCCCT+AGG 0.640949 6_4:-27076830 Msa0983800:three_prime_UTR
CTTACTGTTAGAAATAAACT+GGG 0.641712 6_4:-27076861 Msa0983800:three_prime_UTR
CTGAGAAGCTCATCTCACGT+TGG 0.660450 6_4:-27077755 Msa0983800:intron
GAAGGTTGTGCCGTACGAGG+CGG 0.663173 6_4:-27080711 Msa0983800:CDS
CAGGTTCAATGAGGAAAGTG+CGG 0.674947 6_4:-27078878 Msa0983800:CDS
TGGAAGGGTGTAGAGAAAAG+CGG 0.685152 6_4:+27078131 None:intergenic
GGGTGATGCTGAGTAGACAC+TGG 0.688398 6_4:+27080974 None:intergenic
CACTGCCAGATACGATACAA+CGG 0.709393 6_4:+27077041 None:intergenic
CGAGGCGGTAACATCTACTG+GGG 0.743069 6_4:-27080696 Msa0983800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAATGAATAATAAAA+TGG + chr6_4:27076640-27076659 None:intergenic 10.0%
!!! AATCTTTGTTTAGTAATTTT+TGG - chr6_4:27077216-27077235 Msa0983800:CDS 15.0%
!! TTGTCAATTTACAATTAATT+AGG - chr6_4:27078810-27078829 Msa0983800:intron 15.0%
!! AGAATGAATAATAAAATGGT+GGG + chr6_4:27076636-27076655 None:intergenic 20.0%
!! AAGAATGAATAATAAAATGG+TGG + chr6_4:27076637-27076656 None:intergenic 20.0%
!!! TGAAGCTTTTTTTTTTTCTA+TGG + chr6_4:27076772-27076791 None:intergenic 20.0%
!!! CATTTTTTTTTCAATTTCGT+TGG - chr6_4:27077079-27077098 Msa0983800:three_prime_UTR 20.0%
!! AATAGAATTATTGGATTTAG+AGG - chr6_4:27077108-27077127 Msa0983800:three_prime_UTR 20.0%
!!! AGTATAATCATGTATGATTT+TGG - chr6_4:27077247-27077266 Msa0983800:CDS 20.0%
!!! CGATCAGAATTATTATATTT+TGG - chr6_4:27077306-27077325 Msa0983800:CDS 20.0%
!!! TCAGAATTATTATATTTTGG+AGG - chr6_4:27077309-27077328 Msa0983800:CDS 20.0%
!! ACTTGTGAAATTAAGAATAT+GGG - chr6_4:27077765-27077784 Msa0983800:CDS 20.0%
!!! GATTTCATTTTTATTCCTAT+AGG - chr6_4:27077900-27077919 Msa0983800:intron 20.0%
!!! TAATGATATTTAGAATGACA+AGG - chr6_4:27078049-27078068 Msa0983800:CDS 20.0%
!!! AATATTTTTAGAGTTGGTTA+GGG + chr6_4:27078283-27078302 None:intergenic 20.0%
!!! ATTCTGAATATTTTTAGAGT+TGG + chr6_4:27078289-27078308 None:intergenic 20.0%
!!! ACACGTTATTTTTTTGAATA+AGG - chr6_4:27078589-27078608 Msa0983800:intron 20.0%
!! TTCATACCAAAGATAAAAAT+TGG + chr6_4:27079140-27079159 None:intergenic 20.0%
!! TGAATTAATAAATTCCACAA+TGG + chr6_4:27079331-27079350 None:intergenic 20.0%
!! TAGTTATTATTATCTGATTC+AGG - chr6_4:27079914-27079933 Msa0983800:intron 20.0%
!!! GATATGAATATGATAGATTT+TGG - chr6_4:27080500-27080519 Msa0983800:intron 20.0%
!! TCAAACAATTATATTACCTA+GGG + chr6_4:27080769-27080788 None:intergenic 20.0%
!! TTCAAACAATTATATTACCT+AGG + chr6_4:27080770-27080789 None:intergenic 20.0%
!! GGTAATATAATTGTTTGAAA+TGG - chr6_4:27080771-27080790 Msa0983800:five_prime_UTR 20.0%
!! ATATATTTGTGGGAATAAAT+AGG - chr6_4:27080884-27080903 Msa0983800:five_prime_UTR 20.0%
! AATCCAATAATTCTATTCCA+TGG + chr6_4:27077105-27077124 None:intergenic 25.0%
! AATTTGCGAAGTTAATAGAT+AGG - chr6_4:27077582-27077601 Msa0983800:CDS 25.0%
! AATAAGTTACTCCAAAGATT+GGG - chr6_4:27077675-27077694 Msa0983800:intron 25.0%
! GACTTGTGAAATTAAGAATA+TGG - chr6_4:27077764-27077783 Msa0983800:CDS 25.0%
!! CAAGATTCAATGCTATATTT+TGG + chr6_4:27077836-27077855 None:intergenic 25.0%
!!! ATATTTTTAGAGTTGGTTAG+GGG + chr6_4:27078282-27078301 None:intergenic 25.0%
!!! GAATATTTTTAGAGTTGGTT+AGG + chr6_4:27078284-27078303 None:intergenic 25.0%
! TAACTTACAAGTATACTGAT+AGG + chr6_4:27078481-27078500 None:intergenic 25.0%
! GTATTTGTAAGAACAGATTT+AGG + chr6_4:27078527-27078546 None:intergenic 25.0%
! ATAACCAACTAAGTATCTAT+TGG - chr6_4:27078564-27078583 Msa0983800:intron 25.0%
! TCAAAAACATAAAATGCCAA+TGG + chr6_4:27078730-27078749 None:intergenic 25.0%
!!! TGTTTTTGATGAACTTATTG+AGG - chr6_4:27078741-27078760 Msa0983800:intron 25.0%
!!! CAATAGAAGAAACTTTTTCT+TGG - chr6_4:27078873-27078892 Msa0983800:CDS 25.0%
!! ACTTGTTAAGAAATCAAAAG+AGG + chr6_4:27078967-27078986 None:intergenic 25.0%
! TTTAAGTGAAAAGATTGCTT+TGG - chr6_4:27079010-27079029 Msa0983800:intron 25.0%
! TTAAGTGAAAAGATTGCTTT+GGG - chr6_4:27079011-27079030 Msa0983800:intron 25.0%
!! AGTCATCCAATTTTTATCTT+TGG - chr6_4:27079131-27079150 Msa0983800:intron 25.0%
!! ATTGTTGTCTTCAGAATTTT+GGG - chr6_4:27079691-27079710 Msa0983800:intron 25.0%
!! TCCATTTCTCATTTTATGTT+CGG - chr6_4:27079716-27079735 Msa0983800:intron 25.0%
! GTTGAATTTGAAGATTGATA+TGG - chr6_4:27080596-27080615 Msa0983800:CDS 25.0%
! ACTTACTGTTAGAAATAAAC+TGG - chr6_4:27080718-27080737 Msa0983800:CDS 25.0%
! CTTACTGTTAGAAATAAACT+GGG - chr6_4:27080719-27080738 Msa0983800:CDS 25.0%
!! TTTTCTTTTTGACAATTCTG+AGG - chr6_4:27080820-27080839 Msa0983800:five_prime_UTR 25.0%
! TTTGTGTCTGTATATATTTG+TGG - chr6_4:27080873-27080892 Msa0983800:five_prime_UTR 25.0%
! TTGTGTCTGTATATATTTGT+GGG - chr6_4:27080874-27080893 Msa0983800:five_prime_UTR 25.0%
! AATCAAACAAAGTAAAACAC+CGG + chr6_4:27080973-27080992 None:intergenic 25.0%
AAAACACTCCCTAAAACTAA+AGG - chr6_4:27076570-27076589 Msa0983800:three_prime_UTR 30.0%
!!! CAAATTGGCCTTTAGTTTTA+GGG + chr6_4:27076581-27076600 None:intergenic 30.0%
!! ATAATAAAATGGTGGGTGAT+GGG + chr6_4:27076629-27076648 None:intergenic 30.0%
!! AATAATAAAATGGTGGGTGA+TGG + chr6_4:27076630-27076649 None:intergenic 30.0%
CAATCAGAAAATAACAGTGA+TGG + chr6_4:27076748-27076767 None:intergenic 30.0%
AATCGTTGTAATCTTTGCTT+GGG - chr6_4:27076934-27076953 Msa0983800:three_prime_UTR 30.0%
!! TTTAGAGGTTGATAGATTGA+TGG - chr6_4:27077123-27077142 Msa0983800:three_prime_UTR 30.0%
!! TTAGAGGTTGATAGATTGAT+GGG - chr6_4:27077124-27077143 Msa0983800:three_prime_UTR 30.0%
! ATGTTGTGTACTTAGTTCTT+TGG - chr6_4:27077278-27077297 Msa0983800:CDS 30.0%
!! TCCTTCTAGTTAAGTGTTTT+TGG - chr6_4:27077341-27077360 Msa0983800:CDS 30.0%
!! CCTTCTAGTTAAGTGTTTTT+GGG - chr6_4:27077342-27077361 Msa0983800:CDS 30.0%
TATAACCATTCCAAATGGTT+AGG + chr6_4:27077426-27077445 None:intergenic 30.0%
TATAGCAACAAAAACTACCT+TGG - chr6_4:27077442-27077461 Msa0983800:CDS 30.0%
AGACAACTAATGCTAAGAAA+AGG + chr6_4:27077534-27077553 None:intergenic 30.0%
! TTTTCTTAGCATTAGTTGTC+TGG - chr6_4:27077533-27077552 Msa0983800:CDS 30.0%
AGAAAGTAGAAACTATATGC+TGG - chr6_4:27077609-27077628 Msa0983800:CDS 30.0%
CTTATTCTACTCTCAACAAA+TGG + chr6_4:27077661-27077680 None:intergenic 30.0%
GAATAAGTTACTCCAAAGAT+TGG - chr6_4:27077674-27077693 Msa0983800:intron 30.0%
GTGAAATTAAGAATATGGGT+AGG - chr6_4:27077769-27077788 Msa0983800:CDS 30.0%
AATTAAGAATATGGGTAGGT+TGG - chr6_4:27077773-27077792 Msa0983800:CDS 30.0%
TGTTTAGTTGCTTCAATTTC+TGG - chr6_4:27077952-27077971 Msa0983800:intron 30.0%
ATATACTAATATGCTGTTGC+GGG + chr6_4:27078099-27078118 None:intergenic 30.0%
CATATACTAATATGCTGTTG+CGG + chr6_4:27078100-27078119 None:intergenic 30.0%
!!! TCCTTTTTTATTTTCCACCA+CGG + chr6_4:27078193-27078212 None:intergenic 30.0%
TGGTGGAAAATAAAAAAGGA+AGG - chr6_4:27078193-27078212 Msa0983800:CDS 30.0%
GGTGGAAAATAAAAAAGGAA+GGG - chr6_4:27078194-27078213 Msa0983800:CDS 30.0%
CTTGTAAGTTATATGTAGCT+TGG - chr6_4:27078490-27078509 Msa0983800:intron 30.0%
GTAACCAATAGATACTTAGT+TGG + chr6_4:27078571-27078590 None:intergenic 30.0%
AGGTGAGCACAAATTTAATA+CGG + chr6_4:27078621-27078640 None:intergenic 30.0%
! CTGAAATAATTTGTACAGAC+AGG + chr6_4:27079103-27079122 None:intergenic 30.0%
CTGTCTGTACAAATTATTTC+AGG - chr6_4:27079101-27079120 Msa0983800:intron 30.0%
! TTGAAGTTGTGTATGTCTTT+TGG - chr6_4:27079169-27079188 Msa0983800:intron 30.0%
! TGAAGTTGTGTATGTCTTTT+GGG - chr6_4:27079170-27079189 Msa0983800:intron 30.0%
GTATGGAAAGCAATTATAGT+AGG + chr6_4:27079205-27079224 None:intergenic 30.0%
TCTGGACATATATATGATTC+TGG - chr6_4:27079396-27079415 Msa0983800:intron 30.0%
AAATCACTTGTAACATCTAG+TGG + chr6_4:27079423-27079442 None:intergenic 30.0%
! CTAGATGTTACAAGTGATTT+TGG - chr6_4:27079423-27079442 Msa0983800:intron 30.0%
CTGAAGACAACAATGAAATT+AGG + chr6_4:27079685-27079704 None:intergenic 30.0%
! CATTGTTGTCTTCAGAATTT+TGG - chr6_4:27079690-27079709 Msa0983800:intron 30.0%
! TTGTTGTCTTCAGAATTTTG+GGG - chr6_4:27079692-27079711 Msa0983800:intron 30.0%
TCCGAACATAAAATGAGAAA+TGG + chr6_4:27079720-27079739 None:intergenic 30.0%
ACCCATGTTAAATTATGTTC+TGG - chr6_4:27079858-27079877 Msa0983800:intron 30.0%
GCCAGAACATAATTTAACAT+GGG + chr6_4:27079862-27079881 None:intergenic 30.0%
TGCCAGAACATAATTTAACA+TGG + chr6_4:27079863-27079882 None:intergenic 30.0%
AATTAATTGCAACTTTCTGC+AGG + chr6_4:27080090-27080109 None:intergenic 30.0%
AACAACAATGATAGAGAATC+TGG - chr6_4:27080181-27080200 Msa0983800:intron 30.0%
ACAACAATGATAGAGAATCT+GGG - chr6_4:27080182-27080201 Msa0983800:intron 30.0%
! ATGTGAAATTTTGTGGGAAT+CGG - chr6_4:27080332-27080351 Msa0983800:intron 30.0%
ATGCGTTTAATTCCTCTAAA+AGG + chr6_4:27080379-27080398 None:intergenic 30.0%
TTTAGAGGAATTAAACGCAT+TGG - chr6_4:27080379-27080398 Msa0983800:intron 30.0%
TGATCACCTGTTTATATCTA+CGG + chr6_4:27080656-27080675 None:intergenic 30.0%
ATAATTGTTGTCACTCAGAA+AGG - chr6_4:27080682-27080701 Msa0983800:CDS 30.0%
TAATTGTTGTCACTCAGAAA+GGG - chr6_4:27080683-27080702 Msa0983800:CDS 30.0%
AAATGGAAAAAGATGAACTG+AGG - chr6_4:27080788-27080807 Msa0983800:five_prime_UTR 30.0%
!!! CAATTTTTTAGCCTCAAACA+TGG + chr6_4:27080910-27080929 None:intergenic 30.0%
GTAAGAAAAGCAGAATATTC+CGG - chr6_4:27080951-27080970 Msa0983800:five_prime_UTR 30.0%
!!! CCAAATTGGCCTTTAGTTTT+AGG + chr6_4:27076582-27076601 None:intergenic 35.0%
CCTAAAACTAAAGGCCAATT+TGG - chr6_4:27076579-27076598 Msa0983800:three_prime_UTR 35.0%
TAGACACTGGATATCCAAAT+TGG + chr6_4:27076596-27076615 None:intergenic 35.0%
!! TAACAGTGATGGCTTTGAAT+CGG + chr6_4:27076737-27076756 None:intergenic 35.0%
!! AAACACGACACTGATTTCAA+AGG - chr6_4:27076911-27076930 Msa0983800:three_prime_UTR 35.0%
GAATCGTTGTAATCTTTGCT+TGG - chr6_4:27076933-27076952 Msa0983800:three_prime_UTR 35.0%
! AATTCCTGTAACAGGTTTTG+TGG + chr6_4:27076968-27076987 None:intergenic 35.0%
AAGAGAATTCCAACCTAAAG+AGG + chr6_4:27077005-27077024 None:intergenic 35.0%
CTAGAAAAGAGAAACTTACG+CGG + chr6_4:27077050-27077069 None:intergenic 35.0%
!! TTTTTCAATTTCGTTGGCCA+TGG - chr6_4:27077085-27077104 Msa0983800:three_prime_UTR 35.0%
TGGCCATGGAATAGAATTAT+TGG - chr6_4:27077099-27077118 Msa0983800:three_prime_UTR 35.0%
CCCAAAAACACTTAACTAGA+AGG + chr6_4:27077345-27077364 None:intergenic 35.0%
GTTATGTTTGCCTAACCATT+TGG - chr6_4:27077413-27077432 Msa0983800:CDS 35.0%
GTTGCTATAACCATTCCAAA+TGG + chr6_4:27077431-27077450 None:intergenic 35.0%
TCAAACATTTGATCGTATGC+TGG - chr6_4:27077506-27077525 Msa0983800:CDS 35.0%
TTGCGAAGTTAATAGATAGG+TGG - chr6_4:27077585-27077604 Msa0983800:CDS 35.0%
CTAGTCTCTTACATTCCTAT+AGG + chr6_4:27077918-27077937 None:intergenic 35.0%
! ACCGTGGTGGAAAATAAAAA+AGG - chr6_4:27078189-27078208 Msa0983800:CDS 35.0%
!! GGGAATATTTTCTCTGGTTT+AGG + chr6_4:27078262-27078281 None:intergenic 35.0%
AAGTATACTGATAGGACACT+TGG + chr6_4:27078473-27078492 None:intergenic 35.0%
TGAGCACAAATTTAATACGG+TGG + chr6_4:27078618-27078637 None:intergenic 35.0%
! TCACAATTTTCTCTTCATCC+AGG - chr6_4:27078683-27078702 Msa0983800:intron 35.0%
ACCTATGACTATGACACTTA+GGG + chr6_4:27078991-27079010 None:intergenic 35.0%
AACCTATGACTATGACACTT+AGG + chr6_4:27078992-27079011 None:intergenic 35.0%
GAAAAAGAAGCAAACACAAC+AGG + chr6_4:27079066-27079085 None:intergenic 35.0%
! TGTTTGCTTCTTTTTCTGCT+GGG - chr6_4:27079070-27079089 Msa0983800:intron 35.0%
! GAAGTTGTGTATGTCTTTTG+GGG - chr6_4:27079171-27079190 Msa0983800:intron 35.0%
TTCACTAAGCTGCATTTGTA+TGG + chr6_4:27079222-27079241 None:intergenic 35.0%
ATACAAATGCAGCTTAGTGA+AGG - chr6_4:27079221-27079240 Msa0983800:intron 35.0%
! AATTGCATTACCAAGTTGAG+TGG + chr6_4:27079260-27079279 None:intergenic 35.0%
ATCAATCAAAGTAGAAAGCG+AGG + chr6_4:27079289-27079308 None:intergenic 35.0%
GCTTTCTACTTTGATTGATG+TGG - chr6_4:27079290-27079309 Msa0983800:intron 35.0%
AGCATGACTGTCAATTGTTT+AGG - chr6_4:27079364-27079383 Msa0983800:intron 35.0%
TTGTTTAGGAACTGTGTTTC+TGG - chr6_4:27079378-27079397 Msa0983800:intron 35.0%
! ACCATCAAAGCTTGTTTCTT+GGG - chr6_4:27079488-27079507 Msa0983800:intron 35.0%
AATCTCAATCAGCTGATCAT+TGG - chr6_4:27079562-27079581 Msa0983800:intron 35.0%
AGTAATCTATCTTGACCATC+TGG - chr6_4:27079609-27079628 Msa0983800:intron 35.0%
GAATGTTTAGTGGCATGTTT+CGG - chr6_4:27079631-27079650 Msa0983800:intron 35.0%
! TTTTCGTGAATACGTTGACA+CGG + chr6_4:27079999-27080018 None:intergenic 35.0%
ATACTTGAACGAGAAAGAAC+TGG - chr6_4:27080022-27080041 Msa0983800:intron 35.0%
!!! AGTTTTAGAAGAGTTGCAGT+GGG - chr6_4:27080118-27080137 Msa0983800:intron 35.0%
TGTGTTCCAAAGAATGTTGA+AGG - chr6_4:27080301-27080320 Msa0983800:intron 35.0%
TTCCAAAGAATGTTGAAGGT+TGG - chr6_4:27080305-27080324 Msa0983800:intron 35.0%
TCCAAAGAATGTTGAAGGTT+GGG - chr6_4:27080306-27080325 Msa0983800:intron 35.0%
! TGGGATGATGTGAAATTTTG+TGG - chr6_4:27080325-27080344 Msa0983800:intron 35.0%
! GGGATGATGTGAAATTTTGT+GGG - chr6_4:27080326-27080345 Msa0983800:intron 35.0%
! AAATTTTGTGGGAATCGGAA+TGG - chr6_4:27080337-27080356 Msa0983800:intron 35.0%
! AATTTTGTGGGAATCGGAAT+GGG - chr6_4:27080338-27080357 Msa0983800:intron 35.0%
! TCCTGAATTTTACGAGACAA+AGG - chr6_4:27080475-27080494 Msa0983800:intron 35.0%
TCCTTTGTCTCGTAAAATTC+AGG + chr6_4:27080479-27080498 None:intergenic 35.0%
! TGAATTTTACGAGACAAAGG+AGG - chr6_4:27080478-27080497 Msa0983800:intron 35.0%
!! ATAGATTTTGGTGCAACAGT+GGG - chr6_4:27080512-27080531 Msa0983800:intron 35.0%
TGATTGCCGTAGATATAAAC+AGG - chr6_4:27080647-27080666 Msa0983800:CDS 35.0%
AATTGTTGTCACTCAGAAAG+GGG - chr6_4:27080684-27080703 Msa0983800:CDS 35.0%
!!! TTTTTGACAATTCTGAGGTG+AGG - chr6_4:27080825-27080844 Msa0983800:five_prime_UTR 35.0%
GAATAAATAGGCCATGTTTG+AGG - chr6_4:27080896-27080915 Msa0983800:five_prime_UTR 35.0%
!! GAGTTTGACAGAAGTTGATA+TGG - chr6_4:27081002-27081021 Msa0983800:five_prime_UTR 35.0%
AATTCACGTGTTTCGCTTAC+TGG - chr6_4:27076814-27076833 Msa0983800:three_prime_UTR 40.0%
ATTCACGTGTTTCGCTTACT+GGG - chr6_4:27076815-27076834 Msa0983800:three_prime_UTR 40.0%
AGTTCCACAAAACCTGTTAC+AGG - chr6_4:27076961-27076980 Msa0983800:three_prime_UTR 40.0%
GTTGACCTTTACTCCTCTTT+AGG - chr6_4:27076989-27077008 Msa0983800:three_prime_UTR 40.0%
ACCTTTACTCCTCTTTAGGT+TGG - chr6_4:27076993-27077012 Msa0983800:three_prime_UTR 40.0%
TCCAACCTAAAGAGGAGTAA+AGG + chr6_4:27076997-27077016 None:intergenic 40.0%
!! GGTTGATAGATTGATGGGTT+TGG - chr6_4:27077129-27077148 Msa0983800:three_prime_UTR 40.0%
TTTGCCTTAAGCTTGTGAGA+GGG - chr6_4:27077371-27077390 Msa0983800:CDS 40.0%
GTTTGCCTAACCATTTGGAA+TGG - chr6_4:27077418-27077437 Msa0983800:CDS 40.0%
! AACATGCAAAGCATCATCCA+AGG + chr6_4:27077462-27077481 None:intergenic 40.0%
AAGTTACTCCAAAGATTGGG+TGG - chr6_4:27077678-27077697 Msa0983800:intron 40.0%
AGTTACTCCAAAGATTGGGT+GGG - chr6_4:27077679-27077698 Msa0983800:intron 40.0%
TTACTAACCCACCCAATCTT+TGG + chr6_4:27077689-27077708 None:intergenic 40.0%
TGAATCTTGTAAGACAGCCA+TGG - chr6_4:27077847-27077866 Msa0983800:CDS 40.0%
GTTAGAAGTTCTCGAAACTC+TGG + chr6_4:27078225-27078244 None:intergenic 40.0%
! GGTTAGGGGAATATTTTCTC+TGG + chr6_4:27078268-27078287 None:intergenic 40.0%
AGAGGATGAGTTAGTTAGTG+AGG + chr6_4:27078356-27078375 None:intergenic 40.0%
TTGCACGAAGGAAAAAAGGT+GGG + chr6_4:27078388-27078407 None:intergenic 40.0%
TTTGCACGAAGGAAAAAAGG+TGG + chr6_4:27078389-27078408 None:intergenic 40.0%
AGGTTTGCACGAAGGAAAAA+AGG + chr6_4:27078392-27078411 None:intergenic 40.0%
TACACCAAACCAATGAGTCA+AGG + chr6_4:27078641-27078660 None:intergenic 40.0%
!! GGTTTGGTGTACAATACTGA+TGG - chr6_4:27078650-27078669 Msa0983800:intron 40.0%
AAAATGCTAACAAGCACCCT+TGG - chr6_4:27078833-27078852 Msa0983800:intron 40.0%
AAATGCTAACAAGCACCCTT+GGG - chr6_4:27078834-27078853 Msa0983800:intron 40.0%
! GTGTTTGCTTCTTTTTCTGC+TGG - chr6_4:27079069-27079088 Msa0983800:intron 40.0%
! TGATGTGGTTTTCTACATCG+CGG - chr6_4:27079305-27079324 Msa0983800:intron 40.0%
! AGAAACAAGCTTTGATGGTC+CGG + chr6_4:27079487-27079506 None:intergenic 40.0%
! GACCATCAAAGCTTGTTTCT+TGG - chr6_4:27079487-27079506 Msa0983800:intron 40.0%
! ACCCAAGAAACAAGCTTTGA+TGG + chr6_4:27079492-27079511 None:intergenic 40.0%
AAAGTCTGTTGCATCTGGTT+TGG - chr6_4:27079515-27079534 Msa0983800:intron 40.0%
! TGACCATCTGGAATGTTTAG+TGG - chr6_4:27079621-27079640 Msa0983800:intron 40.0%
ATGCCACTAAACATTCCAGA+TGG + chr6_4:27079627-27079646 None:intergenic 40.0%
TGTGAGCCATTTATTGGAGA+AGG - chr6_4:27079973-27079992 Msa0983800:intron 40.0%
! CGAGAAAGAACTGGTATTGA+TGG - chr6_4:27080031-27080050 Msa0983800:intron 40.0%
!!! GAGTTTTAGAAGAGTTGCAG+TGG - chr6_4:27080117-27080136 Msa0983800:intron 40.0%
CTGAACTAGGCAAAAAGAAG+TGG + chr6_4:27080153-27080172 None:intergenic 40.0%
! TTCTTTTTGCCTAGTTCAGC+AGG - chr6_4:27080154-27080173 Msa0983800:intron 40.0%
TTGTTATGTCCTGCTGAACT+AGG + chr6_4:27080166-27080185 None:intergenic 40.0%
! ATAGAGAATCTGGGATTCCA+CGG - chr6_4:27080191-27080210 Msa0983800:intron 40.0%
CGTCAAAAAGAAATTGCCCA+AGG + chr6_4:27080279-27080298 None:intergenic 40.0%
TCCCAACCTTCAACATTCTT+TGG + chr6_4:27080310-27080329 None:intergenic 40.0%
!! GATAGATTTTGGTGCAACAG+TGG - chr6_4:27080511-27080530 Msa0983800:intron 40.0%
GGTTGCGATGATTCAACTAT+CGG - chr6_4:27080566-27080585 Msa0983800:CDS 40.0%
GTTGCGATGATTCAACTATC+GGG - chr6_4:27080567-27080586 Msa0983800:CDS 40.0%
AACTGGGTGATGTTTGACTA+AGG - chr6_4:27080735-27080754 Msa0983800:exon 40.0%
!! ACAGAAGTTGATATGGCGTA+TGG - chr6_4:27081009-27081028 Msa0983800:five_prime_UTR 40.0%
TCTCATATCATCGCTATGCG+TGG - chr6_4:27076842-27076861 Msa0983800:three_prime_UTR 45.0%
GGTCAACGAATTCCTGTAAC+AGG + chr6_4:27076976-27076995 None:intergenic 45.0%
!! GATGGGTTTGGTGTTACTTG+TGG - chr6_4:27077141-27077160 Msa0983800:three_prime_UTR 45.0%
!! GGTTTGGTGTTACTTGTGGA+TGG - chr6_4:27077145-27077164 Msa0983800:three_prime_UTR 45.0%
CTTTGCCTTAAGCTTGTGAG+AGG - chr6_4:27077370-27077389 Msa0983800:CDS 45.0%
TTGCCTTAAGCTTGTGAGAG+GGG - chr6_4:27077372-27077391 Msa0983800:CDS 45.0%
! AACTATATGCTGGTCTGCTC+TGG - chr6_4:27077619-27077638 Msa0983800:CDS 45.0%
! AGAATATGGGTAGGTTGGAG+AGG - chr6_4:27077778-27077797 Msa0983800:CDS 45.0%
AAGTGTTCCAGCTGAATCCA+TGG + chr6_4:27077867-27077886 None:intergenic 45.0%
!! GGTTTAGGAGCATTTAGCTC+TGG + chr6_4:27078247-27078266 None:intergenic 45.0%
TGTGCACCAATCTCATGTGA+GGG + chr6_4:27078333-27078352 None:intergenic 45.0%
AAGGAAAAAAGGTGGGGCAA+GGG + chr6_4:27078381-27078400 None:intergenic 45.0%
TGCACGAAGGAAAAAAGGTG+GGG + chr6_4:27078387-27078406 None:intergenic 45.0%
TTGTGCTCACCTTGACTCAT+TGG - chr6_4:27078629-27078648 Msa0983800:intron 45.0%
! CTCACCTTGACTCATTGGTT+TGG - chr6_4:27078634-27078653 Msa0983800:intron 45.0%
CTCTTCATCCAGGTTCAATG+AGG - chr6_4:27078693-27078712 Msa0983800:intron 45.0%
CAGGTTCAATGAGGAAAGTG+CGG - chr6_4:27078702-27078721 Msa0983800:intron 45.0%
AATGCTAACAAGCACCCTTG+GGG - chr6_4:27078835-27078854 Msa0983800:intron 45.0%
CTTCTAAACAAGTGCCCCAA+GGG + chr6_4:27078852-27078871 None:intergenic 45.0%
ACTTCTAAACAAGTGCCCCA+AGG + chr6_4:27078853-27078872 None:intergenic 45.0%
GCCCTAAGTGTCATAGTCAT+AGG - chr6_4:27078987-27079006 Msa0983800:intron 45.0%
! AAGATTGCTTTGGGTTACGC+AGG - chr6_4:27079020-27079039 Msa0983800:intron 45.0%
GAAGCAAACACAACAGGACA+TGG + chr6_4:27079060-27079079 None:intergenic 45.0%
! TGGAAGGGTGTAGAGAAAAG+CGG + chr6_4:27079452-27079471 None:intergenic 45.0%
! GAAACAAGCTTTGATGGTCC+GGG + chr6_4:27079486-27079505 None:intergenic 45.0%
GTAGCAAAGTCTGTTGCATC+TGG - chr6_4:27079510-27079529 Msa0983800:intron 45.0%
TCAATCAGCTGATCATTGGC+AGG - chr6_4:27079566-27079585 Msa0983800:intron 45.0%
ACAGCAGCTCTGTATTGGAT+TGG + chr6_4:27079956-27079975 None:intergenic 45.0%
AGCTGCTGTGAGCCATTTAT+TGG - chr6_4:27079967-27079986 Msa0983800:intron 45.0%
ACACGGCCTTCTCCAATAAA+TGG + chr6_4:27079982-27080001 None:intergenic 45.0%
GGCAAAAAGAAGTGGTCACT+TGG + chr6_4:27080145-27080164 None:intergenic 45.0%
! TAGAGAATCTGGGATTCCAC+GGG - chr6_4:27080192-27080211 Msa0983800:intron 45.0%
! TCACGTGTGTCACCTTTTAG+AGG - chr6_4:27080364-27080383 Msa0983800:intron 45.0%
! TTAAACGCATTGGTCGCTCT+AGG - chr6_4:27080389-27080408 Msa0983800:intron 45.0%
CACTGCCAGATACGATACAA+CGG + chr6_4:27080542-27080561 None:intergenic 45.0%
TATCGTATCTGGCAGTGCAA+TGG - chr6_4:27080545-27080564 Msa0983800:intron 45.0%
GACTAAGGTAACTACTCCCT+AGG - chr6_4:27080750-27080769 Msa0983800:five_prime_UTR 45.0%
ATCGCTATGCGTGGAGTTGA+AGG - chr6_4:27076851-27076870 Msa0983800:three_prime_UTR 50.0%
GTAGATGTTACCGCCTCGTA+CGG + chr6_4:27076882-27076901 None:intergenic 50.0%
TACGAGGCGGTAACATCTAC+TGG - chr6_4:27076882-27076901 Msa0983800:three_prime_UTR 50.0%
ACGAGGCGGTAACATCTACT+GGG - chr6_4:27076883-27076902 Msa0983800:three_prime_UTR 50.0%
TCTGCTCTGGCAACTTGAAC+AGG - chr6_4:27077632-27077651 Msa0983800:CDS 50.0%
CTGCTCTGGCAACTTGAACA+GGG - chr6_4:27077633-27077652 Msa0983800:CDS 50.0%
TGCTCTGGCAACTTGAACAG+GGG - chr6_4:27077634-27077653 Msa0983800:CDS 50.0%
AAGACAGCCATGGATTCAGC+TGG - chr6_4:27077857-27077876 Msa0983800:CDS 50.0%
GGATTCAGCTGGAACACTTG+TGG - chr6_4:27077868-27077887 Msa0983800:CDS 50.0%
TTCAGCTGGAACACTTGTGG+AGG - chr6_4:27077871-27077890 Msa0983800:CDS 50.0%
TCAGCTGGAACACTTGTGGA+GGG - chr6_4:27077872-27077891 Msa0983800:CDS 50.0%
CAATCTCATGTGAGGGGGTT+GGG + chr6_4:27078326-27078345 None:intergenic 50.0%
TGCACCAATCTCATGTGAGG+GGG + chr6_4:27078331-27078350 None:intergenic 50.0%
GTGCACCAATCTCATGTGAG+GGG + chr6_4:27078332-27078351 None:intergenic 50.0%
GTGTGCACCAATCTCATGTG+AGG + chr6_4:27078334-27078353 None:intergenic 50.0%
AGGAAAAAAGGTGGGGCAAG+GGG + chr6_4:27078380-27078399 None:intergenic 50.0%
GAAGGAAAAAAGGTGGGGCA+AGG + chr6_4:27078382-27078401 None:intergenic 50.0%
! CTTCTGGAAGGTTTGCACGA+AGG + chr6_4:27078400-27078419 None:intergenic 50.0%
AAACCTTCCAGAAGCTGGCT+CGG - chr6_4:27078406-27078425 Msa0983800:intron 50.0%
CCATGGTGAGCTAAGCAATG+GGG + chr6_4:27078441-27078460 None:intergenic 50.0%
CCCATGGTGAGCTAAGCAAT+GGG + chr6_4:27078442-27078461 None:intergenic 50.0%
CCCATTGCTTAGCTCACCAT+GGG - chr6_4:27078439-27078458 Msa0983800:intron 50.0%
! CTTAGCTCACCATGGGCTAT+AGG - chr6_4:27078446-27078465 Msa0983800:intron 50.0%
ACACTTGGACCTATAGCCCA+TGG + chr6_4:27078458-27078477 None:intergenic 50.0%
CGCACTTTCCTCATTGAACC+TGG + chr6_4:27078704-27078723 None:intergenic 50.0%
! TTTGGGTTACGCAGGTGCTA+AGG - chr6_4:27079028-27079047 Msa0983800:intron 50.0%
TTACGCAGGTGCTAAGGACT+AGG - chr6_4:27079034-27079053 Msa0983800:intron 50.0%
ATGCACAGCTCCACTCAACT+TGG - chr6_4:27079247-27079266 Msa0983800:intron 50.0%
TTTCTACATCGCGGCCATTG+TGG - chr6_4:27079314-27079333 Msa0983800:intron 50.0%
! CGGGCACTTTTGCAATGGAA+GGG + chr6_4:27079467-27079486 None:intergenic 50.0%
!! CCTTCCATTGCAAAAGTGCC+CGG - chr6_4:27079465-27079484 Msa0983800:intron 50.0%
CTGAGAAGCTCATCTCACGT+TGG - chr6_4:27079825-27079844 Msa0983800:intron 50.0%
TCTTCTTTCTGTTCGTCCCG+TGG + chr6_4:27080211-27080230 None:intergenic 50.0%
! TGGGAAGCTAGGAGCACAAA+CGG + chr6_4:27080236-27080255 None:intergenic 50.0%
TTTGTGGGAATCGGAATGGG+AGG - chr6_4:27080341-27080360 Msa0983800:intron 50.0%
!! ATTTTGGTGCAACAGTGGGC+CGG - chr6_4:27080516-27080535 Msa0983800:intron 50.0%
TTGTCACTCAGAAAGGGGAG+TGG - chr6_4:27080689-27080708 Msa0983800:CDS 50.0%
GGGTGATGCTGAGTAGACAC+TGG + chr6_4:27076609-27076628 None:intergenic 55.0%
GTTGAAGGTTGTGCCGTACG+AGG - chr6_4:27076866-27076885 Msa0983800:three_prime_UTR 55.0%
CGAGGCGGTAACATCTACTG+GGG - chr6_4:27076884-27076903 Msa0983800:three_prime_UTR 55.0%
GCTCCCCTCTCACAAGCTTA+AGG + chr6_4:27077378-27077397 None:intergenic 55.0%
TGAGCTCAAGAGCTCTACCG+TGG - chr6_4:27078173-27078192 Msa0983800:CDS 55.0%
!! AGGGGGTTGGGTAGTGGAAA+GGG + chr6_4:27078314-27078333 None:intergenic 55.0%
CCAATCTCATGTGAGGGGGT+TGG + chr6_4:27078327-27078346 None:intergenic 55.0%
CCAACCCCCTCACATGAGAT+TGG - chr6_4:27078324-27078343 Msa0983800:intron 55.0%
GGAAAAAAGGTGGGGCAAGG+GGG + chr6_4:27078379-27078398 None:intergenic 55.0%
CGTGCAAACCTTCCAGAAGC+TGG - chr6_4:27078401-27078420 Msa0983800:intron 55.0%
! AACCTTCCAGAAGCTGGCTC+GGG - chr6_4:27078407-27078426 Msa0983800:intron 55.0%
CCCCATTGCTTAGCTCACCA+TGG - chr6_4:27078438-27078457 Msa0983800:intron 55.0%
GCCCATGGTGAGCTAAGCAA+TGG + chr6_4:27078443-27078462 None:intergenic 55.0%
!! TGAGGAAAGTGCGGTGCCAT+TGG - chr6_4:27078711-27078730 Msa0983800:intron 55.0%
! CCGGGCACTTTTGCAATGGA+AGG + chr6_4:27079468-27079487 None:intergenic 55.0%
! TGGTCCGGGCACTTTTGCAA+TGG + chr6_4:27079472-27079491 None:intergenic 55.0%
GGCTCACAGCAGCTCTGTAT+TGG + chr6_4:27079961-27079980 None:intergenic 55.0%
! GGGAAGCTAGGAGCACAAAC+GGG + chr6_4:27080235-27080254 None:intergenic 55.0%
GCCAGATACGATACAACGGC+CGG + chr6_4:27080538-27080557 None:intergenic 55.0%
GAAGGTTGTGCCGTACGAGG+CGG - chr6_4:27076869-27076888 Msa0983800:three_prime_UTR 60.0%
GCTCAAGAGCTCTACCGTGG+TGG - chr6_4:27078176-27078195 Msa0983800:CDS 60.0%
!! GGGGGTTGGGTAGTGGAAAG+GGG + chr6_4:27078313-27078332 None:intergenic 60.0%
!! GAGGGGGTTGGGTAGTGGAA+AGG + chr6_4:27078315-27078334 None:intergenic 60.0%
CATGTGAGGGGGTTGGGTAG+TGG + chr6_4:27078320-27078339 None:intergenic 60.0%
! GCGCTGATGCTTGGGAAGCT+AGG + chr6_4:27080247-27080266 None:intergenic 60.0%
!! CGCTGTGAGCGCTGATGCTT+GGG + chr6_4:27080255-27080274 None:intergenic 60.0%
!! ACGCTGTGAGCGCTGATGCT+TGG + chr6_4:27080256-27080275 None:intergenic 60.0%
ATCAGCGCTCACAGCGTCCT+TGG - chr6_4:27080259-27080278 Msa0983800:intron 60.0%
TCAGCGCTCACAGCGTCCTT+GGG - chr6_4:27080260-27080279 Msa0983800:intron 60.0%
GCCGGCCGTTGTATCGTATC+TGG - chr6_4:27080534-27080553 Msa0983800:intron 60.0%
AAAGGTGGGGCAAGGGGGAG+AGG + chr6_4:27078374-27078393 None:intergenic 65.0%
AGCCCGAGCCAGCTTCTGGA+AGG + chr6_4:27078412-27078431 None:intergenic 65.0%
!! TTCCAGAAGCTGGCTCGGGC+TGG - chr6_4:27078411-27078430 Msa0983800:intron 65.0%
AACCAGCCCGAGCCAGCTTC+TGG + chr6_4:27078416-27078435 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 27076568 27081034 27076568 ID=Msa0983800;Name=Msa0983800
chr6_4 mRNA 27076568 27081034 27076568 ID=Msa0983800-mRNA-1;Parent=Msa0983800;Name=Msa0983800-mRNA-1;_AED=0.21;_eAED=0.21;_QI=289|0.8|1|1|1|1|6|617|383
chr6_4 exon 27076568 27077666 27076568 ID=Msa0983800-mRNA-1:exon:7704;Parent=Msa0983800-mRNA-1
chr6_4 exon 27077756 27077897 27077756 ID=Msa0983800-mRNA-1:exon:7703;Parent=Msa0983800-mRNA-1
chr6_4 exon 27077997 27078236 27077997 ID=Msa0983800-mRNA-1:exon:7702;Parent=Msa0983800-mRNA-1
chr6_4 exon 27078334 27078369 27078334 ID=Msa0983800-mRNA-1:exon:7701;Parent=Msa0983800-mRNA-1
chr6_4 exon 27078840 27078897 27078840 ID=Msa0983800-mRNA-1:exon:7700;Parent=Msa0983800-mRNA-1
chr6_4 exon 27080552 27081034 27080552 ID=Msa0983800-mRNA-1:exon:7699;Parent=Msa0983800-mRNA-1
chr6_4 five_prime_UTR 27080746 27081034 27080746 ID=Msa0983800-mRNA-1:five_prime_utr;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27080552 27080745 27080552 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27078840 27078897 27078840 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27078334 27078369 27078334 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27077997 27078236 27077997 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27077756 27077897 27077756 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 CDS 27077185 27077666 27077185 ID=Msa0983800-mRNA-1:cds;Parent=Msa0983800-mRNA-1
chr6_4 three_prime_UTR 27076568 27077184 27076568 ID=Msa0983800-mRNA-1:three_prime_utr;Parent=Msa0983800-mRNA-1
Gene Sequence

>Msa0983800

ATGCGTGGAGTTGAAGGTTGTGCCGTACGAGGCGGTAACATCTACTGGGGAAGAAAACACGACACTGATTTCAAAGGAATCGTTGTAATCTTTGCTTGGGTTTCAGTTCCACAAAACCTGTTACAGGAATTCGTTGACCTTTACTCCTCTTTAGGTTGGAATTCTCTTGTTTGTTATGCTCATTATCTATCCGCGTTCAATGAGGAAAGTGCGGTGCCATTGGCATTTTATGTTTTTGATGAACTTATTGAGCTTAGTGAAGGAAGATGCACAGCTCCACTCAACTTGCATGACTGTCAATTGTTTAGGAACTGTGTTTCTGGACATATATATGATTCTGGTCCACTAGATGTTACAAGTGATTTTGGCTTCCGCTTTTCTCTACACCCTTCCATTGCAAAAGTGCCCGGACCATCAAAGCTTGTTTCTTGGGTAGCAAAGTCTGTTGCATCTGGTTTGGATGCTTTATACTTGACTAGATTTGAATCTCAATCAGCTGATCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGGGCTCCATTTCTCATTTTATGTTCGGAGAATGATGAACTTGTGAGATATCAAAGTATCTATGATTTTGCTCAACGATTACGCAATCTCAACGCTGATGTCAATCTTGTAAATCTGAGAAGCTCATCTCACGTTGGTCATTATGAACATCATCCAATCCAATACAGAGCTGCTGTGAGCCATTTATTGGAGAAGGCCGTGTCAACGTATTCACGAAAAGTTATACTTGAACGAGAAAGAACTGGTATTGATGGTACGCACGACGAGATATCTGAGTTAATCTGTGACCTGCAGAAAGTTGCAATTAATTCAAATGAGAGTTTTAGAAGAGTTGCAGTGGGACCAAGTGACCACTTCTTTTTGCCTAGTTCAGCAGGACATAACAACAATGATAGAGAATCTGGGATTCCACGGGACGAACAGAAAGAAGAACCCGTTTGTGCTCCTAGCTTCCCAAGCATCAGCGCTCACAGCGTCCTTGGGCAATTTCTTTTTGACGTTTGTGTTCCAAAGAATGTTGAAGGTTGGGATGATGTGAAATTTTGTGGGAATCGGAATGGGAGGTCACGTGTGTCACCTTTTAGAGGAATTAAACGCATTGGTCGCTCTAGGTTATGA
Protein sequence

>Msa0983800

MRGVEGCAVRGGNIYWGRKHDTDFKGIVVIFAWVSVPQNLLQEFVDLYSSLGWNSLVCYAHYLSAFNEESAVPLAFYVFDELIELSEGRCTAPLNLHDCQLFRNCVSGHIYDSGPLDVTSDFGFRFSLHPSIAKVPGPSKLVSWVAKSVASGLDALYLTRFESQSADHWQALYSSVNFGAPFLILCSENDELVRYQSIYDFAQRLRNLNADVNLVNLRSSSHVGHYEHHPIQYRAAVSHLLEKAVSTYSRKVILERERTGIDGTHDEISELICDLQKVAINSNESFRRVAVGPSDHFFLPSSAGHNNNDRESGIPRDEQKEEPVCAPSFPSISAHSVLGQFLFDVCVPKNVEGWDDVKFCGNRNGRSRVSPFRGIKRIGRSRL*