Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611960 | XP_024638054.1 | 98.695 | 383 | 5 | 0 | 1 | 383 | 1 | 383 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611960 | sp|O81155|CYSKP_SOLTU | 81.449 | 345 | 61 | 2 | 41 | 382 | 41 | 385 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611960 | Msa0630090 | 0.804147 | 2.483788e-49 | -8.615850e-47 |
| Msa0611960 | Msa0644970 | 0.817054 | 4.023664e-52 | -8.615850e-47 |
| Msa0611960 | Msa1339560 | 0.802589 | 5.223153e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611960 | MtrunA17_Chr4g0045781 | 98.695 | 383 | 5 | 0 | 1 | 383 | 1 | 383 | 0.0 | 763 |
| Msa0611960 | MtrunA17_Chr4g0045721 | 82.507 | 343 | 57 | 1 | 41 | 383 | 25 | 364 | 0.0 | 582 |
| Msa0611960 | MtrunA17_Chr4g0045771 | 70.496 | 383 | 85 | 4 | 1 | 383 | 1 | 355 | 0.0 | 543 |
| Msa0611960 | MtrunA17_Chr5g0394491 | 73.684 | 323 | 85 | 0 | 61 | 383 | 3 | 325 | 1.24e-161 | 456 |
| Msa0611960 | MtrunA17_Chr1g0205381 | 73.684 | 323 | 85 | 0 | 61 | 383 | 3 | 325 | 5.53e-161 | 454 |
| Msa0611960 | MtrunA17_Chr1g0191041 | 73.885 | 314 | 82 | 0 | 66 | 379 | 8 | 321 | 6.24e-156 | 442 |
| Msa0611960 | MtrunA17_Chr1g0191051 | 66.879 | 314 | 104 | 0 | 66 | 379 | 7 | 320 | 2.26e-145 | 415 |
| Msa0611960 | MtrunA17_Chr7g0254401 | 60.929 | 366 | 120 | 4 | 17 | 379 | 23 | 368 | 1.75e-143 | 412 |
| Msa0611960 | MtrunA17_Chr7g0248021 | 61.059 | 321 | 125 | 0 | 61 | 381 | 56 | 376 | 8.99e-142 | 408 |
| Msa0611960 | MtrunA17_Chr1g0191061 | 58.146 | 356 | 103 | 2 | 70 | 379 | 25 | 380 | 7.38e-129 | 375 |
| Msa0611960 | MtrunA17_Chr1g0191071 | 61.798 | 267 | 95 | 2 | 114 | 379 | 1 | 261 | 2.14e-97 | 290 |
| Msa0611960 | MtrunA17_Chr5g0446431 | 26.912 | 353 | 199 | 7 | 70 | 365 | 48 | 398 | 1.07e-33 | 129 |
| Msa0611960 | MtrunA17_Chr2g0310201 | 42.754 | 138 | 43 | 6 | 130 | 240 | 6 | 134 | 2.24e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611960 | AT2G43750.1 | 82.196 | 337 | 60 | 0 | 46 | 382 | 55 | 391 | 0.0 | 542 |
| Msa0611960 | AT2G43750.2 | 82.196 | 337 | 60 | 0 | 46 | 382 | 55 | 391 | 0.0 | 542 |
| Msa0611960 | AT3G59760.1 | 81.791 | 335 | 59 | 1 | 48 | 382 | 97 | 429 | 0.0 | 540 |
| Msa0611960 | AT3G59760.3 | 81.791 | 335 | 59 | 1 | 48 | 382 | 97 | 429 | 0.0 | 540 |
| Msa0611960 | AT3G59760.2 | 81.433 | 307 | 55 | 1 | 48 | 354 | 97 | 401 | 3.92e-173 | 489 |
| Msa0611960 | AT4G14880.5 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 3.05e-154 | 437 |
| Msa0611960 | AT4G14880.3 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 3.05e-154 | 437 |
| Msa0611960 | AT4G14880.4 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 3.05e-154 | 437 |
| Msa0611960 | AT4G14880.2 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 3.05e-154 | 437 |
| Msa0611960 | AT4G14880.1 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 3.05e-154 | 437 |
| Msa0611960 | AT3G04940.1 | 68.254 | 315 | 100 | 0 | 65 | 379 | 7 | 321 | 6.77e-146 | 416 |
| Msa0611960 | AT3G04940.2 | 68.254 | 315 | 100 | 0 | 65 | 379 | 7 | 321 | 6.77e-146 | 416 |
| Msa0611960 | AT5G28020.2 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 3.06e-139 | 399 |
| Msa0611960 | AT5G28020.4 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 3.06e-139 | 399 |
| Msa0611960 | AT5G28020.1 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 3.06e-139 | 399 |
| Msa0611960 | AT5G28020.3 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 3.06e-139 | 399 |
| Msa0611960 | AT5G28020.6 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 3.06e-139 | 399 |
| Msa0611960 | AT5G28030.1 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 5.47e-136 | 391 |
| Msa0611960 | AT5G28030.4 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 5.47e-136 | 391 |
| Msa0611960 | AT5G28030.5 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 5.47e-136 | 391 |
| Msa0611960 | AT5G28030.2 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 5.47e-136 | 391 |
| Msa0611960 | AT3G61440.1 | 55.301 | 349 | 155 | 1 | 33 | 381 | 17 | 364 | 3.42e-134 | 388 |
| Msa0611960 | AT3G03630.1 | 63.636 | 319 | 106 | 1 | 62 | 380 | 95 | 403 | 6.88e-131 | 381 |
| Msa0611960 | AT3G22460.1 | 64.444 | 270 | 76 | 1 | 114 | 383 | 1 | 250 | 1.79e-121 | 352 |
| Msa0611960 | AT3G61440.2 | 61.940 | 268 | 102 | 0 | 114 | 381 | 1 | 268 | 3.68e-116 | 339 |
| Msa0611960 | AT3G61440.4 | 53.872 | 297 | 136 | 1 | 33 | 329 | 17 | 312 | 1.23e-108 | 322 |
| Msa0611960 | AT5G28030.3 | 64.344 | 244 | 87 | 0 | 66 | 309 | 7 | 250 | 1.12e-104 | 309 |
| Msa0611960 | AT3G61440.3 | 61.157 | 242 | 94 | 0 | 140 | 381 | 2 | 243 | 8.19e-103 | 304 |
| Msa0611960 | AT3G22460.2 | 72.928 | 181 | 49 | 0 | 66 | 246 | 8 | 188 | 6.22e-97 | 287 |
| Msa0611960 | AT5G28020.5 | 63.675 | 234 | 85 | 0 | 146 | 379 | 1 | 234 | 6.09e-93 | 278 |
| Msa0611960 | AT1G55880.1 | 27.348 | 362 | 203 | 6 | 62 | 365 | 36 | 395 | 4.15e-36 | 136 |
| Msa0611960 | AT1G55880.2 | 29.032 | 248 | 134 | 3 | 62 | 268 | 36 | 282 | 1.72e-31 | 122 |
Find 117 sgRNAs with CRISPR-Local
Find 449 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTGCAGCTGCATTGC+AGG | 0.091196 | 4_2:-60337554 | Msa0611960:CDS |
| GGAACTGGTGGAACCATTTC+TGG | 0.116462 | 4_2:-60339475 | Msa0611960:CDS |
| CAAATTCTGCATAATGTTAT+TGG | 0.138928 | 4_2:-60336925 | Msa0611960:three_prime_UTR |
| GGTTCAGACCAGAGAAATTT+TGG | 0.141272 | 4_2:+60342528 | None:intergenic |
| TGCTGCTAAGCTTGAGATTA+TGG | 0.213789 | 4_2:-60342133 | Msa0611960:CDS |
| TTCCGAATATCCTTGCATTT+TGG | 0.225970 | 4_2:-60337002 | Msa0611960:three_prime_UTR |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_2:-60339189 | Msa0611960:CDS |
| GAAAATGAGGGAAAGCTTAT+TGG | 0.259838 | 4_2:-60337517 | Msa0611960:CDS |
| CTCACAAAATTCAGGGTATT+GGG | 0.285360 | 4_2:-60339056 | Msa0611960:CDS |
| AAAAGTCAATGAGTTGATTA+AGG | 0.295418 | 4_2:+60342485 | None:intergenic |
| CACAGGACCTCACAAAATTC+AGG | 0.311237 | 4_2:-60339064 | Msa0611960:intron |
| AAAATGAGGGAAAGCTTATT+GGG | 0.318994 | 4_2:-60337516 | Msa0611960:CDS |
| AGACAACTGGGCCAGAGATA+TGG | 0.320313 | 4_2:-60339540 | Msa0611960:CDS |
| CACTTCTTCATCCAAATTCC+TGG | 0.322667 | 4_2:+60339020 | None:intergenic |
| GGACTAATAGAATAGGAAAA+AGG | 0.323018 | 4_2:-60342636 | Msa0611960:five_prime_UTR |
| AATGCCTGCTTCCATGAGTT+TGG | 0.334639 | 4_2:-60340214 | Msa0611960:CDS |
| GTATACACTTCAGAGTGTTT+TGG | 0.338547 | 4_2:-60340313 | Msa0611960:intron |
| ACCTTTAGAAGCTGCTATAA+AGG | 0.347698 | 4_2:+60340254 | None:intergenic |
| AATTACCTTCCCAGGTGTTA+TGG | 0.349471 | 4_2:+60341715 | None:intergenic |
| AAACGTGTAAAATTATTTCA+TGG | 0.356549 | 4_2:+60337196 | None:intergenic |
| CTCCAAAATGCAAGGATATT+CGG | 0.359869 | 4_2:+60337000 | None:intergenic |
| AAACAGGTGGGAATTTCTTC+AGG | 0.360612 | 4_2:-60337580 | Msa0611960:intron |
| GAGACCTTCGATGGTGGTTT+GGG | 0.380973 | 4_2:+60342329 | None:intergenic |
| CCGTTTACCTTGGGATTTGA+AGG | 0.382196 | 4_2:+60340051 | None:intergenic |
| CCTCACAAAATTCAGGGTAT+TGG | 0.396380 | 4_2:-60339057 | Msa0611960:CDS |
| AGCACTTCAGGAAGGCTTGC+TGG | 0.399953 | 4_2:-60338194 | Msa0611960:intron |
| GAGACGGCCTTGCATAGAAC+GGG | 0.412259 | 4_2:+60342360 | None:intergenic |
| ACTAGTGGGAACACAGGAAT+TGG | 0.412669 | 4_2:-60340282 | Msa0611960:CDS |
| TACAAAGCAAATAGCACTTC+AGG | 0.414950 | 4_2:-60338206 | Msa0611960:CDS |
| GAATCGACCGGTTCCAGAAA+TGG | 0.416931 | 4_2:+60339462 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+TGG | 0.417755 | 4_2:-60337286 | Msa0611960:CDS |
| TGAGACCTTCGATGGTGGTT+TGG | 0.419243 | 4_2:+60342328 | None:intergenic |
| CAATGAGTTGATTAAGGAAG+TGG | 0.419597 | 4_2:+60342491 | None:intergenic |
| GAAATTAGAAGCTTCTGAAC+TGG | 0.429360 | 4_2:-60337075 | Msa0611960:three_prime_UTR |
| GATTCTGGTGGAGATGGAAC+GGG | 0.429833 | 4_2:+60342389 | None:intergenic |
| AAATATCTTTCACCAAAGCT+TGG | 0.442789 | 4_2:+60337274 | None:intergenic |
| GACAACTGGGCCAGAGATAT+GGG | 0.443535 | 4_2:-60339539 | Msa0611960:CDS |
| CTTGTATCTTCCCATATCTC+TGG | 0.446743 | 4_2:+60339529 | None:intergenic |
| AATATCTTTCACCAAAGCTT+GGG | 0.452193 | 4_2:+60337275 | None:intergenic |
| TTCTATTAGTCCTAAAATTG+TGG | 0.454874 | 4_2:+60342647 | None:intergenic |
| GCCTTTATAGCAGCTTCTAA+AGG | 0.455275 | 4_2:-60340255 | Msa0611960:CDS |
| ATCTCCTCCCAAAATTTCTC+TGG | 0.456066 | 4_2:-60342536 | Msa0611960:five_prime_UTR |
| TTAGTTGCAGGGATTGGAAC+TGG | 0.459281 | 4_2:-60339490 | Msa0611960:CDS |
| GGTGGAACCATTTCTGGAAC+CGG | 0.466565 | 4_2:-60339469 | Msa0611960:CDS |
| TTCGGAAACTGTATTGTTGA+AGG | 0.468340 | 4_2:+60337018 | None:intergenic |
| GGAAGAGATTCTGGTGGAGA+TGG | 0.470662 | 4_2:+60342383 | None:intergenic |
| GAAGTGGAAGCCATTGTTGT+TGG | 0.472255 | 4_2:+60342507 | None:intergenic |
| TGATGAGGTGGAGGTGCGGC+TGG | 0.475045 | 4_2:+60342431 | None:intergenic |
| CAATCATCCACCATGCTGTA+AGG | 0.479621 | 4_2:-60337151 | Msa0611960:three_prime_UTR |
| GATGGTGGTTTGGGAATTGA+CGG | 0.489520 | 4_2:+60342338 | None:intergenic |
| AACTCGCCTTTCCAAACTCA+TGG | 0.495233 | 4_2:+60340203 | None:intergenic |
| ATTCCTGTGTTCCCACTAGT+AGG | 0.495325 | 4_2:+60340285 | None:intergenic |
| GTAAAATTATTTCATGGCTC+CGG | 0.496021 | 4_2:+60337202 | None:intergenic |
| TGCAAAGAGGCCTGAAAATG+AGG | 0.501476 | 4_2:-60337530 | Msa0611960:CDS |
| ATACTTTCAGGTGGAAAGCC+AGG | 0.503845 | 4_2:-60339177 | Msa0611960:intron |
| AAAATTCAGGGTATTGGGGC+TGG | 0.504330 | 4_2:-60339051 | Msa0611960:CDS |
| AGTTTCAATAGCTTCATCAC+TGG | 0.506395 | 4_2:+60338228 | None:intergenic |
| ATACTTGATGCTGAGAAGAA+AGG | 0.512921 | 4_2:-60341740 | Msa0611960:CDS |
| ATTCATACCCTTCGCAGCCT+CGG | 0.513025 | 4_2:+60340146 | None:intergenic |
| CTGGTTAAGTAGTGAAGAGT+GGG | 0.513841 | 4_2:+60342450 | None:intergenic |
| AGATTCTGGTGGAGATGGAA+CGG | 0.518004 | 4_2:+60342388 | None:intergenic |
| AGAATGTGAGAACATGCAAC+CGG | 0.525916 | 4_2:-60337221 | Msa0611960:CDS |
| CTTTCCAAACTCATGGAAGC+AGG | 0.527792 | 4_2:+60340210 | None:intergenic |
| ACAACAAAATTCAAAAGTAC+AGG | 0.534751 | 4_2:-60339434 | Msa0611960:intron |
| TGTTGAAGCATGTATGCATC+AGG | 0.535341 | 4_2:+60340084 | None:intergenic |
| AAGAAAGGAGCCATAACACC+TGG | 0.541723 | 4_2:-60341725 | Msa0611960:CDS |
| GAGGCTGCGAAGGGTATGAA+TGG | 0.545844 | 4_2:-60340144 | Msa0611960:CDS |
| ACTTCTTCATCCAAATTCCT+GGG | 0.547488 | 4_2:+60339021 | None:intergenic |
| CTTGTTGTAGTGTCAAAGAC+AGG | 0.551242 | 4_2:-60342107 | Msa0611960:intron |
| GGAGACGGCCTTGCATAGAA+CGG | 0.552788 | 4_2:+60342359 | None:intergenic |
| AGTCCTAAAATTGTGGATTG+TGG | 0.555974 | 4_2:+60342654 | None:intergenic |
| TATCTGAATAGCATCGCAAA+GGG | 0.561830 | 4_2:-60342171 | Msa0611960:CDS |
| TCGGAAACTGTATTGTTGAA+GGG | 0.561932 | 4_2:+60337019 | None:intergenic |
| TGACAATCCTTCAAATCCCA+AGG | 0.564606 | 4_2:-60340058 | Msa0611960:intron |
| ACAGGACCTCACAAAATTCA+GGG | 0.564642 | 4_2:-60339063 | Msa0611960:intron |
| CTGCTTCCATGAGTTTGGAA+AGG | 0.579647 | 4_2:-60340209 | Msa0611960:CDS |
| CTGCATTGCAGGTTGCAAAG+AGG | 0.579876 | 4_2:-60337543 | Msa0611960:CDS |
| AGCAATGTTGAGACCTTCGA+TGG | 0.582249 | 4_2:+60342320 | None:intergenic |
| TACAGCATGGTGGATGATTG+TGG | 0.582877 | 4_2:+60337154 | None:intergenic |
| ATGCTATTCAGATAAACCAT+TGG | 0.587114 | 4_2:+60342180 | None:intergenic |
| CATAGTCATGCCTTACAGCA+TGG | 0.588487 | 4_2:+60337141 | None:intergenic |
| AGGAGCCATAACACCTGGGA+AGG | 0.589374 | 4_2:-60341720 | Msa0611960:intron |
| AGCGAATCGGAGTGATGAGG+TGG | 0.592931 | 4_2:+60342419 | None:intergenic |
| CATTGCTGAAGATGTTACTC+AGG | 0.593016 | 4_2:-60342304 | Msa0611960:intron |
| TTAAACATGCCACTGATCAA+CGG | 0.596731 | 4_2:-60337042 | Msa0611960:three_prime_UTR |
| GAATCGGAGTGATGAGGTGG+AGG | 0.597111 | 4_2:+60342422 | None:intergenic |
| TCACAAAATTCAGGGTATTG+GGG | 0.597332 | 4_2:-60339055 | Msa0611960:CDS |
| ATTCTGGTGGAGATGGAACG+GGG | 0.597352 | 4_2:+60342390 | None:intergenic |
| GTTGAAGGGCCGTTGATCAG+TGG | 0.599793 | 4_2:+60337033 | None:intergenic |
| TTATCTGAATAGCATCGCAA+AGG | 0.601649 | 4_2:-60342172 | Msa0611960:CDS |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_2:+60339192 | None:intergenic |
| GCAAAGAGGCCTGAAAATGA+GGG | 0.613832 | 4_2:-60337529 | Msa0611960:CDS |
| GCTGGTTAAGTAGTGAAGAG+TGG | 0.614564 | 4_2:+60342449 | None:intergenic |
| GGTTTGGGAATTGACGGAGA+CGG | 0.614847 | 4_2:+60342344 | None:intergenic |
| AATTCCCAAACCACCATCGA+AGG | 0.617609 | 4_2:-60342333 | Msa0611960:CDS |
| AATGTTGAGACCTTCGATGG+TGG | 0.620157 | 4_2:+60342323 | None:intergenic |
| GCTCATTGGTAAAACACCAA+TGG | 0.623055 | 4_2:-60342196 | Msa0611960:CDS |
| TTCTGGTGGAGATGGAACGG+GGG | 0.632481 | 4_2:+60342391 | None:intergenic |
| GTTGCAGGGATTGGAACTGG+TGG | 0.633044 | 4_2:-60339487 | Msa0611960:CDS |
| CTTAGCAGCAATATTAGCAA+CGG | 0.634906 | 4_2:+60342146 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_2:-60339186 | Msa0611960:CDS |
| CTGGTCTGAACCAACAACAA+TGG | 0.656009 | 4_2:-60342517 | Msa0611960:exon |
| TCTGGTGGAGATGGAACGGG+GGG | 0.661253 | 4_2:+60342392 | None:intergenic |
| AGAAAGGAGCCATAACACCT+GGG | 0.664252 | 4_2:-60341724 | Msa0611960:CDS |
| AAGCAAATAGCACTTCAGGA+AGG | 0.667188 | 4_2:-60338202 | Msa0611960:CDS |
| GATAGCGAATCGGAGTGATG+AGG | 0.670698 | 4_2:+60342416 | None:intergenic |
| GAACCTACTAGTGGGAACAC+AGG | 0.672376 | 4_2:-60340288 | Msa0611960:CDS |
| CTGTCTTTGACACTACAACA+AGG | 0.672530 | 4_2:+60342108 | None:intergenic |
| AGACGGCCTTGCATAGAACG+GGG | 0.674721 | 4_2:+60342361 | None:intergenic |
| AGTGCTTGATGAAGTTATAG+CGG | 0.676373 | 4_2:-60339001 | Msa0611960:intron |
| AAATGAGGGAAAGCTTATTG+GGG | 0.682298 | 4_2:-60337515 | Msa0611960:intron |
| GAGATATGGGAAGATACAAG+AGG | 0.685029 | 4_2:-60339526 | Msa0611960:CDS |
| GACGGCCTTGCATAGAACGG+GGG | 0.692045 | 4_2:+60342362 | None:intergenic |
| GGAGTGATGAGGTGGAGGTG+CGG | 0.697930 | 4_2:+60342427 | None:intergenic |
| TGGTTAAGTAGTGAAGAGTG+GGG | 0.700929 | 4_2:+60342451 | None:intergenic |
| GGTTAAGTAGTGAAGAGTGG+GGG | 0.706478 | 4_2:+60342452 | None:intergenic |
| AGTCATGCCTTACAGCATGG+TGG | 0.719047 | 4_2:+60337144 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAAAATTCTGATAT+TGG | + | chr4_2:60340416-60340435 | None:intergenic | 10.0% |
| !! | AATAAACTAAAAACAGTTTA+CGG | + | chr4_2:60337560-60337579 | None:intergenic | 15.0% |
| !! | AATCTGTGTATTATTTATAT+GGG | + | chr4_2:60338952-60338971 | None:intergenic | 15.0% |
| !! | AAATCTGTGTATTATTTATA+TGG | + | chr4_2:60338953-60338972 | None:intergenic | 15.0% |
| !! | AACTAAGAATGATAAAAAAA+GGG | + | chr4_2:60339194-60339213 | None:intergenic | 15.0% |
| !! | TAACTAAGAATGATAAAAAA+AGG | + | chr4_2:60339195-60339214 | None:intergenic | 15.0% |
| !!! | TTTTAATATCAATTAAGATG+AGG | - | chr4_2:60340166-60340185 | Msa0611960:CDS | 15.0% |
| !!! | AATTTCTTTTTTTATGTATC+AGG | - | chr4_2:60340310-60340329 | Msa0611960:intron | 15.0% |
| !! | AGAAAATAACAAATATGATA+GGG | + | chr4_2:60341825-60341844 | None:intergenic | 15.0% |
| !! | TAGAAAATAACAAATATGAT+AGG | + | chr4_2:60341826-60341845 | None:intergenic | 15.0% |
| !!! | TCATATTTGTTATTTTCTAT+TGG | - | chr4_2:60341827-60341846 | Msa0611960:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTAACG+AGG | + | chr4_2:60342060-60342079 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATTCTTATGGA+TGG | - | chr4_2:60342074-60342093 | Msa0611960:intron | 15.0% |
| !! | TATGAAAATAACAGAATATA+AGG | + | chr4_2:60342126-60342145 | None:intergenic | 15.0% |
| !! | AATATCAAAAAAATGAGAAA+CGG | + | chr4_2:60342441-60342460 | None:intergenic | 15.0% |
| !!! | AATTTTAGGACTAATAGAAT+AGG | - | chr4_2:60336896-60336915 | Msa0611960:three_prime_UTR | 20.0% |
| !!! | CTTTTATATACAAACTTATG+TGG | + | chr4_2:60337709-60337728 | None:intergenic | 20.0% |
| !! | CACATAAGTTTGTATATAAA+AGG | - | chr4_2:60337707-60337726 | Msa0611960:intron | 20.0% |
| !!! | TTGTTCATTTTAATGTTCTT+TGG | - | chr4_2:60337885-60337904 | Msa0611960:intron | 20.0% |
| !!! | TTTGTTGTTGTTTTAAGTTT+GGG | + | chr4_2:60339759-60339778 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTGTTTTAAGTT+TGG | + | chr4_2:60339760-60339779 | None:intergenic | 20.0% |
| !!! | TAGTTTATTTTTCATTTGTG+TGG | - | chr4_2:60339813-60339832 | Msa0611960:intron | 20.0% |
| !!! | AGTTTATTTTTCATTTGTGT+GGG | - | chr4_2:60339814-60339833 | Msa0611960:intron | 20.0% |
| !! | GTGGTATAATATATGAAATT+TGG | - | chr4_2:60339953-60339972 | Msa0611960:intron | 20.0% |
| !!! | AAAATAGATATTTTAGTTGC+AGG | - | chr4_2:60340037-60340056 | Msa0611960:intron | 20.0% |
| !!! | AAATAGATATTTTAGTTGCA+GGG | - | chr4_2:60340038-60340057 | Msa0611960:intron | 20.0% |
| !!! | CTTTTGAATTTTGTTGTTTT+AGG | + | chr4_2:60340102-60340121 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTATCAGGTTAT+TGG | - | chr4_2:60340317-60340336 | Msa0611960:intron | 20.0% |
| !! | AACATATTAAAGCATAATGA+AGG | - | chr4_2:60341498-60341517 | Msa0611960:intron | 20.0% |
| !! | ACATATTAAAGCATAATGAA+GGG | - | chr4_2:60341499-60341518 | Msa0611960:intron | 20.0% |
| !! | ACCATATTAGAACATTATTA+AGG | - | chr4_2:60341630-60341649 | Msa0611960:intron | 20.0% |
| !! | CCATATTAGAACATTATTAA+GGG | - | chr4_2:60341631-60341650 | Msa0611960:intron | 20.0% |
| !! | TCGTAAGAGTAAAAAATATA+AGG | + | chr4_2:60342159-60342178 | None:intergenic | 20.0% |
| !! | CTGCAATATATAAAAATTGT+GGG | + | chr4_2:60342236-60342255 | None:intergenic | 20.0% |
| !! | AAACGTGTAAAATTATTTCA+TGG | + | chr4_2:60342346-60342365 | None:intergenic | 20.0% |
| !!! | ACTTTTTGATGTATTATGAA+TGG | - | chr4_2:60342568-60342587 | Msa0611960:five_prime_UTR | 20.0% |
| !!! | TGTTATTGGTTCAAAAATAA+TGG | - | chr4_2:60342628-60342647 | Msa0611960:five_prime_UTR | 20.0% |
| ! | TTCTATTAGTCCTAAAATTG+TGG | + | chr4_2:60336895-60336914 | None:intergenic | 25.0% |
| !!! | AAAAGTCAATGAGTTGATTA+AGG | + | chr4_2:60337057-60337076 | None:intergenic | 25.0% |
| !!! | CTCCGTTTTTGTTTTTTATT+CGG | - | chr4_2:60337464-60337483 | Msa0611960:intron | 25.0% |
| ! | CACCGAATAAAAAACAAAAA+CGG | + | chr4_2:60337469-60337488 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCATAAGCTATCG+TGG | + | chr4_2:60337595-60337614 | None:intergenic | 25.0% |
| ! | AGTAATTAACAATTCACACA+GGG | + | chr4_2:60338044-60338063 | None:intergenic | 25.0% |
| ! | AAGTAATTAACAATTCACAC+AGG | + | chr4_2:60338045-60338064 | None:intergenic | 25.0% |
| !!! | ACAATCATTTTTTCTTGCTA+CGG | - | chr4_2:60338099-60338118 | Msa0611960:intron | 25.0% |
| ! | TAAATTGTTGTATTATCACC+TGG | - | chr4_2:60338394-60338413 | Msa0611960:intron | 25.0% |
| ! | TAGAAACTACAACTTACTTT+AGG | - | chr4_2:60338445-60338464 | Msa0611960:intron | 25.0% |
| ! | TCTCTTATAATTGAATCACA+TGG | + | chr4_2:60338792-60338811 | None:intergenic | 25.0% |
| ! | TGATTCAATTATAAGAGAGA+AGG | - | chr4_2:60338794-60338813 | Msa0611960:intron | 25.0% |
| ! | AATTATAAGAGAGAAGGAAT+GGG | - | chr4_2:60338800-60338819 | Msa0611960:intron | 25.0% |
| !! | TAATTCTTAGTGAGTTTGTT+AGG | - | chr4_2:60338843-60338862 | Msa0611960:intron | 25.0% |
| ! | GTGTATTATTTATATGGGAA+AGG | + | chr4_2:60338947-60338966 | None:intergenic | 25.0% |
| !!! | ATTCTTAGTTAACTTGTTTC+TGG | - | chr4_2:60339204-60339223 | Msa0611960:CDS | 25.0% |
| !!! | GCTGATTTTTTCAATTACAT+GGG | + | chr4_2:60339550-60339569 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTTTCAATTACA+TGG | + | chr4_2:60339551-60339570 | None:intergenic | 25.0% |
| !!! | TTGTTGTTGTTTTAAGTTTG+GGG | + | chr4_2:60339758-60339777 | None:intergenic | 25.0% |
| ! | TGAAAAATAAACTAGTGACT+TGG | + | chr4_2:60339807-60339826 | None:intergenic | 25.0% |
| !!! | GTTTATTTTTCATTTGTGTG+GGG | - | chr4_2:60339815-60339834 | Msa0611960:intron | 25.0% |
| ! | ACAAATAAACTAAATGCCTA+AGG | + | chr4_2:60339851-60339870 | None:intergenic | 25.0% |
| !! | ACAACAAAATTCAAAAGTAC+AGG | - | chr4_2:60340105-60340124 | Msa0611960:CDS | 25.0% |
| !! | GAAACTTATTATTTCTTACC+TGG | + | chr4_2:60340383-60340402 | None:intergenic | 25.0% |
| ! | AAAAATTCTGATATTGGACT+TGG | + | chr4_2:60340410-60340429 | None:intergenic | 25.0% |
| !! | AGAAAATGCCAATATTTTCT+TGG | - | chr4_2:60340988-60341007 | Msa0611960:intron | 25.0% |
| ! | TTATTTGAGTAAGTGCATAT+CGG | - | chr4_2:60341079-60341098 | Msa0611960:intron | 25.0% |
| ! | CCCTTAATAATGTTCTAATA+TGG | + | chr4_2:60341634-60341653 | None:intergenic | 25.0% |
| ! | ATCAAATTGTATGGAATGTT+TGG | + | chr4_2:60341771-60341790 | None:intergenic | 25.0% |
| ! | AACAAATATGATAGGGATTT+GGG | + | chr4_2:60341818-60341837 | None:intergenic | 25.0% |
| ! | TAACAAATATGATAGGGATT+TGG | + | chr4_2:60341819-60341838 | None:intergenic | 25.0% |
| ! | AAAAAATTCTTATGGATGGA+TGG | - | chr4_2:60342078-60342097 | Msa0611960:intron | 25.0% |
| ! | GAAAATAACAGAATATAAGG+CGG | + | chr4_2:60342123-60342142 | None:intergenic | 25.0% |
| ! | CCTGCAATATATAAAAATTG+TGG | + | chr4_2:60342237-60342256 | None:intergenic | 25.0% |
| !! | CCACAATTTTTATATATTGC+AGG | - | chr4_2:60342234-60342253 | Msa0611960:intron | 25.0% |
| !! | GAAATAATTTTACACGTTTC+AGG | - | chr4_2:60342347-60342366 | Msa0611960:CDS | 25.0% |
| ! | CAAATTCTGCATAATGTTAT+TGG | - | chr4_2:60342614-60342633 | Msa0611960:five_prime_UTR | 25.0% |
| GGACTAATAGAATAGGAAAA+AGG | - | chr4_2:60336903-60336922 | Msa0611960:three_prime_UTR | 30.0% | |
| TAACAAGAAACAGTGTGAAA+CGG | + | chr4_2:60337262-60337281 | None:intergenic | 30.0% | |
| ATGCTATTCAGATAAACCAT+TGG | + | chr4_2:60337362-60337381 | None:intergenic | 30.0% | |
| !!! | CGTTTTTGTTTTTTATTCGG+TGG | - | chr4_2:60337467-60337486 | Msa0611960:intron | 30.0% |
| ! | ATGTTTTCTGTGAGATTGTT+TGG | - | chr4_2:60337504-60337523 | Msa0611960:intron | 30.0% |
| ! | TGTTTTCTGTGAGATTGTTT+GGG | - | chr4_2:60337505-60337524 | Msa0611960:intron | 30.0% |
| !!! | ATTTTGATTTGTTCTCTTGC+AGG | - | chr4_2:60337761-60337780 | Msa0611960:intron | 30.0% |
| AAAAAACAAATTACCTTCCC+AGG | + | chr4_2:60337835-60337854 | None:intergenic | 30.0% | |
| CTTAACACAGTTTCTGTATA+CGG | - | chr4_2:60337941-60337960 | Msa0611960:intron | 30.0% | |
| ! | AACCTATAATATGAAGGTGT+AGG | + | chr4_2:60338004-60338023 | None:intergenic | 30.0% |
| ACTGAGAACCTATAATATGA+AGG | + | chr4_2:60338010-60338029 | None:intergenic | 30.0% | |
| ACGCTAAAATTCCTTATATG+CGG | + | chr4_2:60338286-60338305 | None:intergenic | 30.0% | |
| TATTATAGGGAGGAAAAAGT+GGG | - | chr4_2:60338353-60338372 | Msa0611960:intron | 30.0% | |
| ! | ACAACTTACTTTAGGCATTT+TGG | - | chr4_2:60338453-60338472 | Msa0611960:intron | 30.0% |
| ! | CAACTTACTTTAGGCATTTT+GGG | - | chr4_2:60338454-60338473 | Msa0611960:intron | 30.0% |
| ! | AGGATTTTTACAACCACATT+GGG | - | chr4_2:60338638-60338657 | Msa0611960:intron | 30.0% |
| CAATTATAAGAGAGAAGGAA+TGG | - | chr4_2:60338799-60338818 | Msa0611960:intron | 30.0% | |
| ATCTATGTGTGAGCATTATA+TGG | - | chr4_2:60339060-60339079 | Msa0611960:CDS | 30.0% | |
| ! | TGAGCATTATATGGTTCTTT+TGG | - | chr4_2:60339069-60339088 | Msa0611960:intron | 30.0% |
| !! | TCTTTTGGAAAAGAACAATG+TGG | - | chr4_2:60339084-60339103 | Msa0611960:intron | 30.0% |
| AAAGAACAATGTGGACTTAA+TGG | - | chr4_2:60339093-60339112 | Msa0611960:intron | 30.0% | |
| AAGAACAATGTGGACTTAAT+GGG | - | chr4_2:60339094-60339113 | Msa0611960:intron | 30.0% | |
| ! | CTTTTCTTGCAGATTAATTG+CGG | - | chr4_2:60339142-60339161 | Msa0611960:intron | 30.0% |
| ! | TAGGCTGATATGCTTTTATA+TGG | + | chr4_2:60339696-60339715 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTAAGTTTGG+GGG | + | chr4_2:60339757-60339776 | None:intergenic | 30.0% |
| !!! | AGATACATTTTGAGACAACT+GGG | - | chr4_2:60339987-60340006 | Msa0611960:intron | 30.0% |
| TACAGGTAAATCATTCTCAA+TGG | - | chr4_2:60340122-60340141 | Msa0611960:CDS | 30.0% | |
| TTGATATTAAAAGACACCCA+TGG | + | chr4_2:60340158-60340177 | None:intergenic | 30.0% | |
| GGTAATATCTGCTAAATACT+TGG | - | chr4_2:60340187-60340206 | Msa0611960:CDS | 30.0% | |
| !! | TGCTAAATACTTGGTGTAAA+TGG | - | chr4_2:60340196-60340215 | Msa0611960:CDS | 30.0% |
| ! | ATTTTTAATGGAAACCGACA+AGG | + | chr4_2:60340293-60340312 | None:intergenic | 30.0% |
| GAAGATATTCTCTAATGTGT+GGG | + | chr4_2:60340703-60340722 | None:intergenic | 30.0% | |
| ! | CATTGGAGTTTTCTAAATTC+TGG | - | chr4_2:60340857-60340876 | Msa0611960:intron | 30.0% |
| ACTGAAACTAACTTCAAATG+TGG | + | chr4_2:60340919-60340938 | None:intergenic | 30.0% | |
| ! | ATTTTTCGTTAATGTGCTAC+AGG | - | chr4_2:60340944-60340963 | Msa0611960:intron | 30.0% |
| ! | TTTTTCGTTAATGTGCTACA+GGG | - | chr4_2:60340945-60340964 | Msa0611960:intron | 30.0% |
| ! | TTGGCATTTTCTATTTATCC+TGG | + | chr4_2:60340980-60340999 | None:intergenic | 30.0% |
| AGTACAGACCAAGAAAATAT+TGG | + | chr4_2:60340999-60341018 | None:intergenic | 30.0% | |
| AAGTCAGTTTAACTGATACA+AGG | - | chr4_2:60341224-60341243 | Msa0611960:intron | 30.0% | |
| GCATAAGAACTTTCATATCT+TGG | - | chr4_2:60341653-60341672 | Msa0611960:intron | 30.0% | |
| GTTAATAAGTATCCAAGCAA+TGG | - | chr4_2:60341681-60341700 | Msa0611960:intron | 30.0% | |
| AAATTGTATGGAATGTTTGG+TGG | + | chr4_2:60341768-60341787 | None:intergenic | 30.0% | |
| ACAAATATGATAGGGATTTG+GGG | + | chr4_2:60341817-60341836 | None:intergenic | 30.0% | |
| ACATAGGTGAAATCTTCATT+TGG | + | chr4_2:60341901-60341920 | None:intergenic | 30.0% | |
| AATGAAGATTTCACCTATGT+TGG | - | chr4_2:60341901-60341920 | Msa0611960:intron | 30.0% | |
| TCAAAGTATAAAGCCAACAT+AGG | + | chr4_2:60341917-60341936 | None:intergenic | 30.0% | |
| AAAATGAGGGAAAGCTTATT+GGG | - | chr4_2:60342023-60342042 | Msa0611960:intron | 30.0% | |
| AATATCTTTCACCAAAGCTT+GGG | + | chr4_2:60342267-60342286 | None:intergenic | 30.0% | |
| AAATATCTTTCACCAAAGCT+TGG | + | chr4_2:60342268-60342287 | None:intergenic | 30.0% | |
| !! | AATTTTCTGGAAAAGAACAG+TGG | + | chr4_2:60342293-60342312 | None:intergenic | 30.0% |
| GTAAAATTATTTCATGGCTC+CGG | + | chr4_2:60342340-60342359 | None:intergenic | 30.0% | |
| ! | AGTCCTAAAATTGTGGATTG+TGG | + | chr4_2:60336888-60336907 | None:intergenic | 35.0% |
| ! | GTTCAGACCAGAGAAATTTT+GGG | + | chr4_2:60337013-60337032 | None:intergenic | 35.0% |
| !! | CAATGAGTTGATTAAGGAAG+TGG | + | chr4_2:60337051-60337070 | None:intergenic | 35.0% |
| TTATCTGAATAGCATCGCAA+AGG | - | chr4_2:60337367-60337386 | Msa0611960:intron | 35.0% | |
| TATCTGAATAGCATCGCAAA+GGG | - | chr4_2:60337368-60337387 | Msa0611960:intron | 35.0% | |
| CTTAGCAGCAATATTAGCAA+CGG | + | chr4_2:60337396-60337415 | None:intergenic | 35.0% | |
| ! | TATTCGGTGGTTATGCAATA+TGG | - | chr4_2:60337480-60337499 | Msa0611960:intron | 35.0% |
| GATAAGCGTTTATCCAAACA+GGG | - | chr4_2:60337670-60337689 | Msa0611960:intron | 35.0% | |
| ACATATACCAAAACCCTGTT+TGG | + | chr4_2:60337686-60337705 | None:intergenic | 35.0% | |
| ATACTTGATGCTGAGAAGAA+AGG | - | chr4_2:60337799-60337818 | Msa0611960:intron | 35.0% | |
| CGGCAAAGTTCTCTTAAAAA+TGG | - | chr4_2:60338119-60338138 | Msa0611960:intron | 35.0% | |
| !! | ATAAGGAATTTTAGCGTTGC+AGG | - | chr4_2:60338289-60338308 | Msa0611960:intron | 35.0% |
| TGACCTAATCTGAGTTTAAG+CGG | - | chr4_2:60338320-60338339 | Msa0611960:intron | 35.0% | |
| CTATTATAGGGAGGAAAAAG+TGG | - | chr4_2:60338352-60338371 | Msa0611960:intron | 35.0% | |
| TCTACTAGACTAGGAAAAAG+AGG | - | chr4_2:60338573-60338592 | Msa0611960:intron | 35.0% | |
| CTACTAGACTAGGAAAAAGA+GGG | - | chr4_2:60338574-60338593 | Msa0611960:intron | 35.0% | |
| ! | ATAGAATGTGTTAGTTGGTG+AGG | - | chr4_2:60338610-60338629 | Msa0611960:intron | 35.0% |
| ! | GAGGATTTTTACAACCACAT+TGG | - | chr4_2:60338637-60338656 | Msa0611960:intron | 35.0% |
| ! | ATGTGGTTTGCATCAATGAT+TGG | + | chr4_2:60338682-60338701 | None:intergenic | 35.0% |
| ATCATTGATGCAAACCACAT+AGG | - | chr4_2:60338682-60338701 | Msa0611960:intron | 35.0% | |
| AGAGAATATCTCTCTTGTAC+TGG | - | chr4_2:60338866-60338885 | Msa0611960:intron | 35.0% | |
| ! | AATATCTCTCTTGTACTGGT+AGG | - | chr4_2:60338870-60338889 | Msa0611960:intron | 35.0% |
| TCTATCACACTCTTTGCTTT+AGG | - | chr4_2:60338992-60339011 | Msa0611960:intron | 35.0% | |
| !! | GTATACACTTCAGAGTGTTT+TGG | - | chr4_2:60339226-60339245 | Msa0611960:intron | 35.0% |
| ! | ACCTTTAGAAGCTGCTATAA+AGG | + | chr4_2:60339288-60339307 | None:intergenic | 35.0% |
| !!! | CGAGTTCTTTTGAAAGCATT+TGG | - | chr4_2:60339353-60339372 | Msa0611960:intron | 35.0% |
| AAACAGAAGTCACAAAGTCT+AGG | - | chr4_2:60339615-60339634 | Msa0611960:intron | 35.0% | |
| ! | TTTTATATGGTGCCTTTAGC+AGG | + | chr4_2:60339683-60339702 | None:intergenic | 35.0% |
| AGAAAAAGGAGGACAAAATG+GGG | + | chr4_2:60339726-60339745 | None:intergenic | 35.0% | |
| CAGAAAAAGGAGGACAAAAT+GGG | + | chr4_2:60339727-60339746 | None:intergenic | 35.0% | |
| TCAGAAAAAGGAGGACAAAA+TGG | + | chr4_2:60339728-60339747 | None:intergenic | 35.0% | |
| !! | ACTAGTGACTTGGTATGTTT+GGG | + | chr4_2:60339797-60339816 | None:intergenic | 35.0% |
| !! | AACTAGTGACTTGGTATGTT+TGG | + | chr4_2:60339798-60339817 | None:intergenic | 35.0% |
| TGAACTCAACTGAATGCAAA+GGG | + | chr4_2:60339879-60339898 | None:intergenic | 35.0% | |
| TTGAACTCAACTGAATGCAA+AGG | + | chr4_2:60339880-60339899 | None:intergenic | 35.0% | |
| ATAGAGTTCTACTTCTAACG+TGG | - | chr4_2:60339919-60339938 | Msa0611960:intron | 35.0% | |
| !!! | CAGATACATTTTGAGACAAC+TGG | - | chr4_2:60339986-60340005 | Msa0611960:intron | 35.0% |
| !!! | GATATTTTAGTTGCAGGGAT+TGG | - | chr4_2:60340043-60340062 | Msa0611960:intron | 35.0% |
| !!! | TTGTTGTTTTAGGAATCGAC+CGG | + | chr4_2:60340092-60340111 | None:intergenic | 35.0% |
| GATCTTTGTACTCCATATAC+TGG | - | chr4_2:60340218-60340237 | Msa0611960:CDS | 35.0% | |
| GATAAGACATGACCAGTATA+TGG | + | chr4_2:60340233-60340252 | None:intergenic | 35.0% | |
| ! | CTCACAAAATTCAGGGTATT+GGG | - | chr4_2:60340483-60340502 | Msa0611960:intron | 35.0% |
| !! | TCACAAAATTCAGGGTATTG+GGG | - | chr4_2:60340484-60340503 | Msa0611960:intron | 35.0% |
| ACTTCTTCATCCAAATTCCT+GGG | + | chr4_2:60340521-60340540 | None:intergenic | 35.0% | |
| AGTGCTTGATGAAGTTATAG+CGG | - | chr4_2:60340538-60340557 | Msa0611960:intron | 35.0% | |
| GGAAGATATTCTCTAATGTG+TGG | + | chr4_2:60340704-60340723 | None:intergenic | 35.0% | |
| ATATCTTCCGTTGACAAGAA+TGG | - | chr4_2:60340715-60340734 | Msa0611960:intron | 35.0% | |
| AACTGAAACCTATGTCTTCA+TGG | + | chr4_2:60340753-60340772 | None:intergenic | 35.0% | |
| GCAATGCTTATAGAGGTAAA+AGG | + | chr4_2:60340783-60340802 | None:intergenic | 35.0% | |
| AACAAGATAGTGTGTATGTG+CGG | + | chr4_2:60340815-60340834 | None:intergenic | 35.0% | |
| GTGAACATTCGTTCATACAT+TGG | - | chr4_2:60340840-60340859 | Msa0611960:intron | 35.0% | |
| ! | TGGAGTTTTCTAAATTCTGG+TGG | - | chr4_2:60340860-60340879 | Msa0611960:intron | 35.0% |
| ! | TACTTGTTAGAACTCAACAG+AGG | - | chr4_2:60341015-60341034 | Msa0611960:intron | 35.0% |
| ! | ACTTGTTAGAACTCAACAGA+GGG | - | chr4_2:60341016-60341035 | Msa0611960:intron | 35.0% |
| CTTACTTTACTCGAGTTAGT+TGG | + | chr4_2:60341151-60341170 | None:intergenic | 35.0% | |
| ATATCTGCCAAATCAAGACA+GGG | + | chr4_2:60341291-60341310 | None:intergenic | 35.0% | |
| AGTTTCAATAGCTTCATCAC+TGG | + | chr4_2:60341314-60341333 | None:intergenic | 35.0% | |
| TACAAAGCAAATAGCACTTC+AGG | - | chr4_2:60341333-60341352 | Msa0611960:intron | 35.0% | |
| AAAAATGCAAGTCAGGCAAA+TGG | + | chr4_2:60341397-60341416 | None:intergenic | 35.0% | |
| CACGTTAAAAAATGCAAGTC+AGG | + | chr4_2:60341404-60341423 | None:intergenic | 35.0% | |
| TGTGTAAGTGTGCATGATAT+GGG | + | chr4_2:60341435-60341454 | None:intergenic | 35.0% | |
| TTGATATGTATCCAAGCACT+TGG | - | chr4_2:60341551-60341570 | Msa0611960:intron | 35.0% | |
| TGATATGTATCCAAGCACTT+GGG | - | chr4_2:60341552-60341571 | Msa0611960:intron | 35.0% | |
| !! | CCTTGATAGTTAGCCTTTAA+GGG | + | chr4_2:60341719-60341738 | None:intergenic | 35.0% |
| CCTTAAAGGCTAACTATCAA+GGG | - | chr4_2:60341717-60341736 | Msa0611960:intron | 35.0% | |
| CTTAAAGGCTAACTATCAAG+GGG | - | chr4_2:60341718-60341737 | Msa0611960:intron | 35.0% | |
| TTAAAGGCTAACTATCAAGG+GGG | - | chr4_2:60341719-60341738 | Msa0611960:intron | 35.0% | |
| ! | TGTTTGGTGGAGTATTTAAC+TGG | + | chr4_2:60341755-60341774 | None:intergenic | 35.0% |
| CATTCCATACAATTTGATGC+AGG | - | chr4_2:60341773-60341792 | Msa0611960:intron | 35.0% | |
| AAGTCCTGCATCAAATTGTA+TGG | + | chr4_2:60341780-60341799 | None:intergenic | 35.0% | |
| TTTCCAATGGTAAGAAGGTA+AGG | + | chr4_2:60341941-60341960 | None:intergenic | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_2:60342022-60342041 | None:intergenic | 35.0% |
| GAAAATGAGGGAAAGCTTAT+TGG | - | chr4_2:60342022-60342041 | Msa0611960:intron | 35.0% | |
| AAATGAGGGAAAGCTTATTG+GGG | - | chr4_2:60342024-60342043 | Msa0611960:intron | 35.0% | |
| ! | CACATTCTTCTCGAATTTTC+TGG | + | chr4_2:60342306-60342325 | None:intergenic | 35.0% |
| GAAATTAGAAGCTTCTGAAC+TGG | - | chr4_2:60342464-60342483 | Msa0611960:CDS | 35.0% | |
| TTAAACATGCCACTGATCAA+CGG | - | chr4_2:60342497-60342516 | Msa0611960:CDS | 35.0% | |
| TCGGAAACTGTATTGTTGAA+GGG | + | chr4_2:60342523-60342542 | None:intergenic | 35.0% | |
| TTCGGAAACTGTATTGTTGA+AGG | + | chr4_2:60342524-60342543 | None:intergenic | 35.0% | |
| ! | TTCCGAATATCCTTGCATTT+TGG | - | chr4_2:60342537-60342556 | Msa0611960:five_prime_UTR | 35.0% |
| CTCCAAAATGCAAGGATATT+CGG | + | chr4_2:60342542-60342561 | None:intergenic | 35.0% | |
| ! | GAATATCCTTGCATTTTGGA+GGG | - | chr4_2:60342541-60342560 | Msa0611960:five_prime_UTR | 35.0% |
| ATCTCCTCCCAAAATTTCTC+TGG | - | chr4_2:60337003-60337022 | Msa0611960:three_prime_UTR | 40.0% | |
| ! | GGTTCAGACCAGAGAAATTT+TGG | + | chr4_2:60337014-60337033 | None:intergenic | 40.0% |
| TGGTTAAGTAGTGAAGAGTG+GGG | + | chr4_2:60337091-60337110 | None:intergenic | 40.0% | |
| CTGGTTAAGTAGTGAAGAGT+GGG | + | chr4_2:60337092-60337111 | None:intergenic | 40.0% | |
| CATTGCTGAAGATGTTACTC+AGG | - | chr4_2:60337235-60337254 | Msa0611960:CDS | 40.0% | |
| CAATGAGCTGCAGCAAAAAA+TGG | + | chr4_2:60337331-60337350 | None:intergenic | 40.0% | |
| !!! | CATTTTTTGCTGCAGCTCAT+TGG | - | chr4_2:60337329-60337348 | Msa0611960:intron | 40.0% |
| GCTCATTGGTAAAACACCAA+TGG | - | chr4_2:60337343-60337362 | Msa0611960:intron | 40.0% | |
| TGCTGCTAAGCTTGAGATTA+TGG | - | chr4_2:60337406-60337425 | Msa0611960:intron | 40.0% | |
| CTGTCTTTGACACTACAACA+AGG | + | chr4_2:60337434-60337453 | None:intergenic | 40.0% | |
| ! | CTTGTTGTAGTGTCAAAGAC+AGG | - | chr4_2:60337432-60337451 | Msa0611960:intron | 40.0% |
| ! | AAGCTATCGTGGAAAGCATA+AGG | + | chr4_2:60337584-60337603 | None:intergenic | 40.0% |
| CGATAAGCGTTTATCCAAAC+AGG | - | chr4_2:60337669-60337688 | Msa0611960:intron | 40.0% | |
| ! | CGTTTATCCAAACAGGGTTT+TGG | - | chr4_2:60337676-60337695 | Msa0611960:intron | 40.0% |
| ! | GATTTGTTCTCTTGCAGGAT+AGG | - | chr4_2:60337766-60337785 | Msa0611960:intron | 40.0% |
| AATTACCTTCCCAGGTGTTA+TGG | + | chr4_2:60337827-60337846 | None:intergenic | 40.0% | |
| CGCCTACACCTTCATATTAT+AGG | - | chr4_2:60337999-60338018 | Msa0611960:intron | 40.0% | |
| GACCTAATCTGAGTTTAAGC+GGG | - | chr4_2:60338321-60338340 | Msa0611960:intron | 40.0% | |
| ACCTAATCTGAGTTTAAGCG+GGG | - | chr4_2:60338322-60338341 | Msa0611960:intron | 40.0% | |
| AAAGTGGGACGTGTGAATAT+TGG | - | chr4_2:60338368-60338387 | Msa0611960:intron | 40.0% | |
| CTATCAGTAGATAACATGCC+AGG | + | chr4_2:60338415-60338434 | None:intergenic | 40.0% | |
| CAAGTGTCCTATCACTCTAT+CGG | + | chr4_2:60338490-60338509 | None:intergenic | 40.0% | |
| GATAGAGTGATAGGACACTT+GGG | - | chr4_2:60338489-60338508 | Msa0611960:intron | 40.0% | |
| TAGACTAGGAAAAAGAGGGT+GGG | - | chr4_2:60338578-60338597 | Msa0611960:intron | 40.0% | |
| GGAGGATAGAATGTGTTAGT+TGG | - | chr4_2:60338605-60338624 | Msa0611960:intron | 40.0% | |
| ! | ATTGGCTCATCATGATTGTC+AGG | + | chr4_2:60338664-60338683 | None:intergenic | 40.0% |
| ! | ATAGAATGTGTCAGTTGGTG+AGG | - | chr4_2:60338754-60338773 | Msa0611960:intron | 40.0% |
| CAGGTGCAGCATAAAAGAAA+AGG | + | chr4_2:60339039-60339058 | None:intergenic | 40.0% | |
| TAATGCTCACACATAGATGC+AGG | + | chr4_2:60339058-60339077 | None:intergenic | 40.0% | |
| !! | TACACTTCAGAGTGTTTTGG+TGG | - | chr4_2:60339229-60339248 | Msa0611960:intron | 40.0% |
| ! | TTTTGGTGGAACCTACTAGT+GGG | - | chr4_2:60339243-60339262 | Msa0611960:intron | 40.0% |
| GCCTTTATAGCAGCTTCTAA+AGG | - | chr4_2:60339284-60339303 | Msa0611960:intron | 40.0% | |
| TGTTGAAGCATGTATGCATC+AGG | + | chr4_2:60339458-60339477 | None:intergenic | 40.0% | |
| TGACAATCCTTCAAATCCCA+AGG | - | chr4_2:60339481-60339500 | Msa0611960:CDS | 40.0% | |
| CCTTCAAATCCCAAGGTAAA+CGG | - | chr4_2:60339488-60339507 | Msa0611960:CDS | 40.0% | |
| ! | TAGATGTTGCCGTTTACCTT+GGG | + | chr4_2:60339500-60339519 | None:intergenic | 40.0% |
| ! | TTAGATGTTGCCGTTTACCT+TGG | + | chr4_2:60339501-60339520 | None:intergenic | 40.0% |
| ! | GTGACTTCTGTTTGAAGCAT+GGG | + | chr4_2:60339608-60339627 | None:intergenic | 40.0% |
| ! | TGTGACTTCTGTTTGAAGCA+TGG | + | chr4_2:60339609-60339628 | None:intergenic | 40.0% |
| GAAGTCACAAAGTCTAGGTT+AGG | - | chr4_2:60339620-60339639 | Msa0611960:intron | 40.0% | |
| GAAAAAGGAGGACAAAATGG+GGG | + | chr4_2:60339725-60339744 | None:intergenic | 40.0% | |
| !! | CTAGTGACTTGGTATGTTTG+GGG | + | chr4_2:60339796-60339815 | None:intergenic | 40.0% |
| !!! | GTGGGGAATTTTAGTTCCTT+AGG | - | chr4_2:60339832-60339851 | Msa0611960:intron | 40.0% |
| GAACTCAACTGAATGCAAAG+GGG | + | chr4_2:60339878-60339897 | None:intergenic | 40.0% | |
| CTTGTATCTTCCCATATCTC+TGG | + | chr4_2:60340013-60340032 | None:intergenic | 40.0% | |
| GAGATATGGGAAGATACAAG+AGG | - | chr4_2:60340013-60340032 | Msa0611960:intron | 40.0% | |
| AGCAAAGCTTTCTACCTTGT+CGG | - | chr4_2:60340276-60340295 | Msa0611960:CDS | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_2:60340350-60340369 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_2:60340350-60340369 | Msa0611960:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_2:60340353-60340372 | Msa0611960:intron | 40.0% | |
| CCTGTGGTTTAGCAGAAAAA+AGG | + | chr4_2:60340461-60340480 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTCTGCTAAACCAC+AGG | - | chr4_2:60340458-60340477 | Msa0611960:intron | 40.0% |
| ACAGGACCTCACAAAATTCA+GGG | - | chr4_2:60340476-60340495 | Msa0611960:intron | 40.0% | |
| ! | CCAATACCCTGAATTTTGTG+AGG | + | chr4_2:60340485-60340504 | None:intergenic | 40.0% |
| CCTCACAAAATTCAGGGTAT+TGG | - | chr4_2:60340482-60340501 | Msa0611960:intron | 40.0% | |
| CACTTCTTCATCCAAATTCC+TGG | + | chr4_2:60340522-60340541 | None:intergenic | 40.0% | |
| TGCAAAGTCCATGAAGACAT+AGG | - | chr4_2:60340742-60340761 | Msa0611960:intron | 40.0% | |
| AGACATGGCAATGCTTATAG+AGG | + | chr4_2:60340790-60340809 | None:intergenic | 40.0% | |
| ! | AAATGTGGAGTACCACTCTT+GGG | + | chr4_2:60340904-60340923 | None:intergenic | 40.0% |
| AGTAAGTGCATATCGGATAC+AGG | - | chr4_2:60341086-60341105 | Msa0611960:intron | 40.0% | |
| TTAACTCCCCTGTCTTGATT+TGG | - | chr4_2:60341281-60341300 | Msa0611960:intron | 40.0% | |
| TATCTGCCAAATCAAGACAG+GGG | + | chr4_2:60341290-60341309 | None:intergenic | 40.0% | |
| GATATCTGCCAAATCAAGAC+AGG | + | chr4_2:60341292-60341311 | None:intergenic | 40.0% | |
| AAGCAAATAGCACTTCAGGA+AGG | - | chr4_2:60341337-60341356 | Msa0611960:intron | 40.0% | |
| CTGTGTAAGTGTGCATGATA+TGG | + | chr4_2:60341436-60341455 | None:intergenic | 40.0% | |
| GATATGTATCCAAGCACTTG+GGG | - | chr4_2:60341553-60341572 | Msa0611960:intron | 40.0% | |
| ! | ATTGTTACGCGCTACTTTGA+GGG | + | chr4_2:60341590-60341609 | None:intergenic | 40.0% |
| ! | AGGGAAGATTTTCCATTGCT+TGG | + | chr4_2:60341696-60341715 | None:intergenic | 40.0% |
| GAAAATCTTCCCTCCCTTAA+AGG | - | chr4_2:60341703-60341722 | Msa0611960:intron | 40.0% | |
| !! | GATAGTTAGCCTTTAAGGGA+GGG | + | chr4_2:60341715-60341734 | None:intergenic | 40.0% |
| !! | TGATAGTTAGCCTTTAAGGG+AGG | + | chr4_2:60341716-60341735 | None:intergenic | 40.0% |
| CCCTTAAAGGCTAACTATCA+AGG | - | chr4_2:60341716-60341735 | Msa0611960:intron | 40.0% | |
| !! | CCCTTGATAGTTAGCCTTTA+AGG | + | chr4_2:60341720-60341739 | None:intergenic | 40.0% |
| ! | GGTGGAGTATTTAACTGGTT+TGG | + | chr4_2:60341750-60341769 | None:intergenic | 40.0% |
| GATAGGGATTTGGGGATTAT+GGG | + | chr4_2:60341809-60341828 | None:intergenic | 40.0% | |
| TGATAGGGATTTGGGGATTA+TGG | + | chr4_2:60341810-60341829 | None:intergenic | 40.0% | |
| GATCCTTACCTTCTTACCAT+TGG | - | chr4_2:60341935-60341954 | Msa0611960:intron | 40.0% | |
| ! | CCTGTTTTCCAATGGTAAGA+AGG | + | chr4_2:60341946-60341965 | None:intergenic | 40.0% |
| CCTTCTTACCATTGGAAAAC+AGG | - | chr4_2:60341943-60341962 | Msa0611960:intron | 40.0% | |
| TCTTACCATTGGAAAACAGG+TGG | - | chr4_2:60341946-60341965 | Msa0611960:intron | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | - | chr4_2:60341947-60341966 | Msa0611960:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_2:60341954-60341973 | None:intergenic | 40.0% |
| AAACAGGTGGGAATTTCTTC+AGG | - | chr4_2:60341959-60341978 | Msa0611960:intron | 40.0% | |
| AGAATGTGAGAACATGCAAC+CGG | - | chr4_2:60342318-60342337 | Msa0611960:CDS | 40.0% | |
| ! | CGAATATCCTTGCATTTTGG+AGG | - | chr4_2:60342540-60342559 | Msa0611960:five_prime_UTR | 40.0% |
| ! | CAGACCAGAGAAATTTTGGG+AGG | + | chr4_2:60337010-60337029 | None:intergenic | 45.0% |
| CTGGTCTGAACCAACAACAA+TGG | - | chr4_2:60337022-60337041 | Msa0611960:three_prime_UTR | 45.0% | |
| GAAGTGGAAGCCATTGTTGT+TGG | + | chr4_2:60337035-60337054 | None:intergenic | 45.0% | |
| GGTTAAGTAGTGAAGAGTGG+GGG | + | chr4_2:60337090-60337109 | None:intergenic | 45.0% | |
| GCTGGTTAAGTAGTGAAGAG+TGG | + | chr4_2:60337093-60337112 | None:intergenic | 45.0% | |
| AGATTCTGGTGGAGATGGAA+CGG | + | chr4_2:60337154-60337173 | None:intergenic | 45.0% | |
| ! | GATGGTGGTTTGGGAATTGA+CGG | + | chr4_2:60337204-60337223 | None:intergenic | 45.0% |
| AATTCCCAAACCACCATCGA+AGG | - | chr4_2:60337206-60337225 | Msa0611960:exon | 45.0% | |
| AATGTTGAGACCTTCGATGG+TGG | + | chr4_2:60337219-60337238 | None:intergenic | 45.0% | |
| AGCAATGTTGAGACCTTCGA+TGG | + | chr4_2:60337222-60337241 | None:intergenic | 45.0% | |
| AGATTGTTTGGGAGAGCGAA+TGG | - | chr4_2:60337516-60337535 | Msa0611960:CDS | 45.0% | |
| AAGAAAGGAGCCATAACACC+TGG | - | chr4_2:60337814-60337833 | Msa0611960:intron | 45.0% | |
| AGAAAGGAGCCATAACACCT+GGG | - | chr4_2:60337815-60337834 | Msa0611960:intron | 45.0% | |
| AGAGATTCTGTTCACTGCAC+TGG | - | chr4_2:60338173-60338192 | Msa0611960:intron | 45.0% | |
| ! | TAACCAAGCCTTTTCCCACT+AGG | - | chr4_2:60338245-60338264 | Msa0611960:intron | 45.0% |
| ! | GATGGTGCTAACCGCATATA+AGG | - | chr4_2:60338272-60338291 | Msa0611960:intron | 45.0% |
| ACCCCGCTTAAACTCAGATT+AGG | + | chr4_2:60338326-60338345 | None:intergenic | 45.0% | |
| CGGGGTGTGTGACTATTATA+GGG | - | chr4_2:60338340-60338359 | Msa0611960:intron | 45.0% | |
| GGTGTGTGACTATTATAGGG+AGG | - | chr4_2:60338343-60338362 | Msa0611960:intron | 45.0% | |
| CGATAGAGTGATAGGACACT+TGG | - | chr4_2:60338488-60338507 | Msa0611960:intron | 45.0% | |
| ! | CCCAATGATTGGCTCATCAT+GGG | + | chr4_2:60338522-60338541 | None:intergenic | 45.0% |
| CCCATGATGAGCCAATCATT+GGG | - | chr4_2:60338519-60338538 | Msa0611960:intron | 45.0% | |
| CCATGATGAGCCAATCATTG+GGG | - | chr4_2:60338520-60338539 | Msa0611960:intron | 45.0% | |
| ! | AGTGGATTTGCCCCAATGAT+TGG | + | chr4_2:60338533-60338552 | None:intergenic | 45.0% |
| TCATTGGGGCAAATCCACTT+AGG | - | chr4_2:60338534-60338553 | Msa0611960:intron | 45.0% | |
| AGTCTAGTAGACCTTCCAGA+TGG | + | chr4_2:60338564-60338583 | None:intergenic | 45.0% | |
| TCTGGAAGGTCTACTAGACT+AGG | - | chr4_2:60338564-60338583 | Msa0611960:intron | 45.0% | |
| CTAGACTAGGAAAAAGAGGG+TGG | - | chr4_2:60338577-60338596 | Msa0611960:intron | 45.0% | |
| AGACTAGGAAAAAGAGGGTG+GGG | - | chr4_2:60338579-60338598 | Msa0611960:intron | 45.0% | |
| !! | ATGTGTTAGTTGGTGAGGTC+AGG | - | chr4_2:60338615-60338634 | Msa0611960:intron | 45.0% |
| GTCTAGACCTTCCAAATGGT+GGG | + | chr4_2:60338708-60338727 | None:intergenic | 45.0% | |
| AGTCTAGACCTTCCAAATGG+TGG | + | chr4_2:60338709-60338728 | None:intergenic | 45.0% | |
| CCTAGTCTAGACCTTCCAAA+TGG | + | chr4_2:60338712-60338731 | None:intergenic | 45.0% | |
| CCATTTGGAAGGTCTAGACT+AGG | - | chr4_2:60338709-60338728 | Msa0611960:intron | 45.0% | |
| AGGTCTAGACTAGGAGAAAG+AGG | - | chr4_2:60338718-60338737 | Msa0611960:intron | 45.0% | |
| GGTCTAGACTAGGAGAAAGA+GGG | - | chr4_2:60338719-60338738 | Msa0611960:intron | 45.0% | |
| TAGACTAGGAGAAAGAGGGT+GGG | - | chr4_2:60338723-60338742 | Msa0611960:intron | 45.0% | |
| GGAGGATAGAATGTGTCAGT+TGG | - | chr4_2:60338749-60338768 | Msa0611960:intron | 45.0% | |
| AAGAGAGAAGGAATGGGTAG+TGG | - | chr4_2:60338806-60338825 | Msa0611960:intron | 45.0% | |
| TGGGATCACAAATCCAGAGT+CGG | + | chr4_2:60338901-60338920 | None:intergenic | 45.0% | |
| TTCAGAGGCTCTACAGCTAT+GGG | + | chr4_2:60338920-60338939 | None:intergenic | 45.0% | |
| TATGGGAAAGGTGAGTTCAG+AGG | + | chr4_2:60338935-60338954 | None:intergenic | 45.0% | |
| !! | GTTTTGGTGGAACCTACTAG+TGG | - | chr4_2:60339242-60339261 | Msa0611960:intron | 45.0% |
| ATTCCTGTGTTCCCACTAGT+AGG | + | chr4_2:60339257-60339276 | None:intergenic | 45.0% | |
| ACTAGTGGGAACACAGGAAT+TGG | - | chr4_2:60339257-60339276 | Msa0611960:intron | 45.0% | |
| AATGCCTGCTTCCATGAGTT+TGG | - | chr4_2:60339325-60339344 | Msa0611960:intron | 45.0% | |
| CTTTCCAAACTCATGGAAGC+AGG | + | chr4_2:60339332-60339351 | None:intergenic | 45.0% | |
| CTGCTTCCATGAGTTTGGAA+AGG | - | chr4_2:60339330-60339349 | Msa0611960:intron | 45.0% | |
| AACTCGCCTTTCCAAACTCA+TGG | + | chr4_2:60339339-60339358 | None:intergenic | 45.0% | |
| CCGTTTACCTTGGGATTTGA+AGG | + | chr4_2:60339491-60339510 | None:intergenic | 45.0% | |
| TAACGTGGTGAACTGCATTG+TGG | - | chr4_2:60339934-60339953 | Msa0611960:intron | 45.0% | |
| TTAGTTGCAGGGATTGGAAC+TGG | - | chr4_2:60340049-60340068 | Msa0611960:intron | 45.0% | |
| TCAATGGCATCGTAGAACCA+TGG | - | chr4_2:60340138-60340157 | Msa0611960:CDS | 45.0% | |
| CAATGGCATCGTAGAACCAT+GGG | - | chr4_2:60340139-60340158 | Msa0611960:CDS | 45.0% | |
| ! | ATACTTTCAGGTGGAAAGCC+AGG | - | chr4_2:60340362-60340381 | Msa0611960:intron | 45.0% |
| ! | CTGAATTTTGTGAGGTCCTG+TGG | + | chr4_2:60340477-60340496 | None:intergenic | 45.0% |
| CACAGGACCTCACAAAATTC+AGG | - | chr4_2:60340475-60340494 | Msa0611960:intron | 45.0% | |
| !! | AAAATTCAGGGTATTGGGGC+TGG | - | chr4_2:60340488-60340507 | Msa0611960:intron | 45.0% |
| !!! | TGGTTTTGTGCCCAGGAATT+TGG | - | chr4_2:60340508-60340527 | Msa0611960:intron | 45.0% |
| GCACAGTCCATTCTTGTCAA+CGG | + | chr4_2:60340725-60340744 | None:intergenic | 45.0% | |
| TGTGTATGTGCGGTTAGACA+TGG | + | chr4_2:60340805-60340824 | None:intergenic | 45.0% | |
| ! | CTCTTTTCCTAACCCAAGAG+TGG | - | chr4_2:60340889-60340908 | Msa0611960:intron | 45.0% |
| ! | CAAATGTGGAGTACCACTCT+TGG | + | chr4_2:60340905-60340924 | None:intergenic | 45.0% |
| ! | GATTGTTACGCGCTACTTTG+AGG | + | chr4_2:60341591-60341610 | None:intergenic | 45.0% |
| TGCAAAGAGGCCTGAAAATG+AGG | - | chr4_2:60342009-60342028 | Msa0611960:intron | 45.0% | |
| GCAAAGAGGCCTGAAAATGA+GGG | - | chr4_2:60342010-60342029 | Msa0611960:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+TGG | - | chr4_2:60342253-60342272 | Msa0611960:intron | 45.0% | |
| !! | TACAGCATGGTGGATGATTG+TGG | + | chr4_2:60342388-60342407 | None:intergenic | 45.0% |
| CAATCATCCACCATGCTGTA+AGG | - | chr4_2:60342388-60342407 | Msa0611960:CDS | 45.0% | |
| CATAGTCATGCCTTACAGCA+TGG | + | chr4_2:60342401-60342420 | None:intergenic | 45.0% | |
| ! | GTTTTGCCCTCCAAAATGCA+AGG | + | chr4_2:60342550-60342569 | None:intergenic | 45.0% |
| !!! | ATAAAAAAAGAAATTTTTAA+TGG | + | chr4_2:60340305-60340324 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAATTCTTA+TGG | - | chr4_2:60342070-60342089 | Msa0611960:intron | 5.0% |
| GATAGCGAATCGGAGTGATG+AGG | + | chr4_2:60337126-60337145 | None:intergenic | 50.0% | |
| ATTCTGGTGGAGATGGAACG+GGG | + | chr4_2:60337152-60337171 | None:intergenic | 50.0% | |
| GATTCTGGTGGAGATGGAAC+GGG | + | chr4_2:60337153-60337172 | None:intergenic | 50.0% | |
| GGAAGAGATTCTGGTGGAGA+TGG | + | chr4_2:60337159-60337178 | None:intergenic | 50.0% | |
| TAGAACGGGGGAAGAGATTC+TGG | + | chr4_2:60337168-60337187 | None:intergenic | 50.0% | |
| GGTTTGGGAATTGACGGAGA+CGG | + | chr4_2:60337198-60337217 | None:intergenic | 50.0% | |
| ! | GAGACCTTCGATGGTGGTTT+GGG | + | chr4_2:60337213-60337232 | None:intergenic | 50.0% |
| ! | TGAGACCTTCGATGGTGGTT+TGG | + | chr4_2:60337214-60337233 | None:intergenic | 50.0% |
| ! | CAAGCCTTTTCCCACTAGGT+GGG | - | chr4_2:60338249-60338268 | Msa0611960:intron | 50.0% |
| ! | AAGCCTTTTCCCACTAGGTG+GGG | - | chr4_2:60338250-60338269 | Msa0611960:intron | 50.0% |
| GCGGGGTGTGTGACTATTAT+AGG | - | chr4_2:60338339-60338358 | Msa0611960:intron | 50.0% | |
| CCTATCACTCTATCGGAGTG+TGG | + | chr4_2:60338483-60338502 | None:intergenic | 50.0% | |
| CCACACTCCGATAGAGTGAT+AGG | - | chr4_2:60338480-60338499 | Msa0611960:intron | 50.0% | |
| ! | ATTGGCTCATCATGGGCATC+AGG | + | chr4_2:60338515-60338534 | None:intergenic | 50.0% |
| GCCCATGATGAGCCAATCAT+TGG | - | chr4_2:60338518-60338537 | Msa0611960:intron | 50.0% | |
| ! | CCCCAATGATTGGCTCATCA+TGG | + | chr4_2:60338523-60338542 | None:intergenic | 50.0% |
| ATCCACTTAGGTCCACCATC+TGG | - | chr4_2:60338546-60338565 | Msa0611960:intron | 50.0% | |
| !! | TTCCAGATGGTGGACCTAAG+TGG | + | chr4_2:60338551-60338570 | None:intergenic | 50.0% |
| ACTTAGGTCCACCATCTGGA+AGG | - | chr4_2:60338550-60338569 | Msa0611960:intron | 50.0% | |
| CTAGTAGACCTTCCAGATGG+TGG | + | chr4_2:60338561-60338580 | None:intergenic | 50.0% | |
| !! | TGTTAGTTGGTGAGGTCAGG+AGG | - | chr4_2:60338618-60338637 | Msa0611960:intron | 50.0% |
| CATGATTGTCAGGCCCAATG+TGG | + | chr4_2:60338654-60338673 | None:intergenic | 50.0% | |
| AACCACATAGGCCCACCATT+TGG | - | chr4_2:60338694-60338713 | Msa0611960:intron | 50.0% | |
| !! | TTCCAAATGGTGGGCCTATG+TGG | + | chr4_2:60338699-60338718 | None:intergenic | 50.0% |
| ACATAGGCCCACCATTTGGA+AGG | - | chr4_2:60338698-60338717 | Msa0611960:intron | 50.0% | |
| CTAGACTAGGAGAAAGAGGG+TGG | - | chr4_2:60338722-60338741 | Msa0611960:intron | 50.0% | |
| GTTCAGAGGCTCTACAGCTA+TGG | + | chr4_2:60338921-60338940 | None:intergenic | 50.0% | |
| GAACCTACTAGTGGGAACAC+AGG | - | chr4_2:60339251-60339270 | Msa0611960:intron | 50.0% | |
| !!! | AGCTGAGCTTGTTTTGACCG+AGG | - | chr4_2:60339376-60339395 | Msa0611960:intron | 50.0% |
| ATTCATACCCTTCGCAGCCT+CGG | + | chr4_2:60339396-60339415 | None:intergenic | 50.0% | |
| ATGCACGTCAGTCCTGCTAA+AGG | - | chr4_2:60339668-60339687 | Msa0611960:intron | 50.0% | |
| AAAGGAGGACAAAATGGGGG+TGG | + | chr4_2:60339722-60339741 | None:intergenic | 50.0% | |
| GGGCTTCAGTCAGAAAAAGG+AGG | + | chr4_2:60339737-60339756 | None:intergenic | 50.0% | |
| TGGGGGCTTCAGTCAGAAAA+AGG | + | chr4_2:60339740-60339759 | None:intergenic | 50.0% | |
| AGACAACTGGGCCAGAGATA+TGG | - | chr4_2:60339999-60340018 | Msa0611960:intron | 50.0% | |
| GACAACTGGGCCAGAGATAT+GGG | - | chr4_2:60340000-60340019 | Msa0611960:intron | 50.0% | |
| GGAACTGGTGGAACCATTTC+TGG | - | chr4_2:60340064-60340083 | Msa0611960:CDS | 50.0% | |
| !! | GGTGGAACCATTTCTGGAAC+CGG | - | chr4_2:60340070-60340089 | Msa0611960:CDS | 50.0% |
| ! | GAATCGACCGGTTCCAGAAA+TGG | + | chr4_2:60340080-60340099 | None:intergenic | 50.0% |
| ! | TGGAGTACCACTCTTGGGTT+AGG | + | chr4_2:60340899-60340918 | None:intergenic | 50.0% |
| ! | TACGCGCTACTTTGAGGGAA+GGG | + | chr4_2:60341585-60341604 | None:intergenic | 50.0% |
| ! | TTACGCGCTACTTTGAGGGA+AGG | + | chr4_2:60341586-60341605 | None:intergenic | 50.0% |
| CTGCATTGCAGGTTGCAAAG+AGG | - | chr4_2:60341996-60342015 | Msa0611960:intron | 50.0% | |
| AGTCATGCCTTACAGCATGG+TGG | + | chr4_2:60342398-60342417 | None:intergenic | 50.0% | |
| AGTAGTGAAGAGTGGGGGTG+CGG | + | chr4_2:60337085-60337104 | None:intergenic | 55.0% | |
| GAATCGGAGTGATGAGGTGG+AGG | + | chr4_2:60337120-60337139 | None:intergenic | 55.0% | |
| AGCGAATCGGAGTGATGAGG+TGG | + | chr4_2:60337123-60337142 | None:intergenic | 55.0% | |
| AACGGGGGGAGATAGCGAAT+CGG | + | chr4_2:60337136-60337155 | None:intergenic | 55.0% | |
| TTCTGGTGGAGATGGAACGG+GGG | + | chr4_2:60337151-60337170 | None:intergenic | 55.0% | |
| AACGGGGGAAGAGATTCTGG+TGG | + | chr4_2:60337165-60337184 | None:intergenic | 55.0% | |
| CTCTTCCCCCGTTCTATGCA+AGG | - | chr4_2:60337172-60337191 | Msa0611960:three_prime_UTR | 55.0% | |
| AGACGGCCTTGCATAGAACG+GGG | + | chr4_2:60337181-60337200 | None:intergenic | 55.0% | |
| GAGACGGCCTTGCATAGAAC+GGG | + | chr4_2:60337182-60337201 | None:intergenic | 55.0% | |
| GGAGACGGCCTTGCATAGAA+CGG | + | chr4_2:60337183-60337202 | None:intergenic | 55.0% | |
| AGGAGCCATAACACCTGGGA+AGG | - | chr4_2:60337819-60337838 | Msa0611960:intron | 55.0% | |
| CCACCTAGTGGGAAAAGGCT+TGG | + | chr4_2:60338251-60338270 | None:intergenic | 55.0% | |
| ! | CCAAGCCTTTTCCCACTAGG+TGG | - | chr4_2:60338248-60338267 | Msa0611960:intron | 55.0% |
| CATCCCCACCTAGTGGGAAA+AGG | + | chr4_2:60338256-60338275 | None:intergenic | 55.0% | |
| ! | CTTTTCCCACTAGGTGGGGA+TGG | - | chr4_2:60338254-60338273 | Msa0611960:intron | 55.0% |
| TAGCACCATCCCCACCTAGT+GGG | + | chr4_2:60338262-60338281 | None:intergenic | 55.0% | |
| TTAGCACCATCCCCACCTAG+TGG | + | chr4_2:60338263-60338282 | None:intergenic | 55.0% | |
| AGGAAAAAGAGGGTGGGGTC+AGG | - | chr4_2:60338584-60338603 | Msa0611960:intron | 55.0% | |
| AAAAAGAGGGTGGGGTCAGG+AGG | - | chr4_2:60338587-60338606 | Msa0611960:intron | 55.0% | |
| TAGGAGAAAGAGGGTGGGTC+AGG | - | chr4_2:60338728-60338747 | Msa0611960:intron | 55.0% | |
| !!! | TGTTTTGACCGAGGCTGCGA+AGG | - | chr4_2:60339385-60339404 | Msa0611960:intron | 55.0% |
| !! | GTTTTGACCGAGGCTGCGAA+GGG | - | chr4_2:60339386-60339405 | Msa0611960:intron | 55.0% |
| ! | GAGGCTGCGAAGGGTATGAA+TGG | - | chr4_2:60339395-60339414 | Msa0611960:intron | 55.0% |
| GACAAAATGGGGGTGGCAGT+AGG | + | chr4_2:60339715-60339734 | None:intergenic | 55.0% | |
| GTTGCAGGGATTGGAACTGG+TGG | - | chr4_2:60340052-60340071 | Msa0611960:intron | 55.0% | |
| GCTACAGGGACTATCTGACC+AGG | - | chr4_2:60340959-60340978 | Msa0611960:intron | 55.0% | |
| AGCACTTCAGGAAGGCTTGC+TGG | - | chr4_2:60341345-60341364 | Msa0611960:intron | 55.0% | |
| ! | CGCTACTTTGAGGGAAGGGA+AGG | + | chr4_2:60341581-60341600 | None:intergenic | 55.0% |
| GTTGAAGGGCCGTTGATCAG+TGG | + | chr4_2:60342509-60342528 | None:intergenic | 55.0% | |
| ! | GTAGTGAAGAGTGGGGGTGC+GGG | + | chr4_2:60337084-60337103 | None:intergenic | 60.0% |
| GGAGTGATGAGGTGGAGGTG+CGG | + | chr4_2:60337115-60337134 | None:intergenic | 60.0% | |
| TCTGGTGGAGATGGAACGGG+GGG | + | chr4_2:60337150-60337169 | None:intergenic | 60.0% | |
| GACGGCCTTGCATAGAACGG+GGG | + | chr4_2:60337180-60337199 | None:intergenic | 60.0% | |
| AAGGTGTAGGCGTGCAGCAC+AGG | + | chr4_2:60337991-60338010 | None:intergenic | 60.0% | |
| GAGAAAGAGGGTGGGTCAGG+AGG | - | chr4_2:60338731-60338750 | Msa0611960:intron | 60.0% | |
| CTGGTAGGAGTCTCCGACTC+TGG | - | chr4_2:60338885-60338904 | Msa0611960:intron | 60.0% | |
| !!! | TTGGGGCTGGTTTTGTGCCC+AGG | - | chr4_2:60340501-60340520 | Msa0611960:intron | 60.0% |
| GGGAAGGTTCCCCAAGTGCT+TGG | + | chr4_2:60341565-60341584 | None:intergenic | 60.0% | |
| TGCTGCTGCAGCTGCATTGC+AGG | - | chr4_2:60341985-60342004 | Msa0611960:intron | 60.0% | |
| ! | TGATGAGGTGGAGGTGCGGC+TGG | + | chr4_2:60337111-60337130 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60336883 | 60342678 | 60336883 | ID=Msa0611960;Name=Msa0611960 |
| chr4_2 | mRNA | 60336883 | 60342678 | 60336883 | ID=Msa0611960-mRNA-1;Parent=Msa0611960;Name=Msa0611960-mRNA-1;_AED=0.31;_eAED=0.31;_QI=158|1|1|1|1|1|10|330|383 |
| chr4_2 | exon | 60336883 | 60337305 | 60336883 | ID=Msa0611960-mRNA-1:exon:16265;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60337516 | 60337596 | 60337516 | ID=Msa0611960-mRNA-1:exon:16264;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60338195 | 60338254 | 60338195 | ID=Msa0611960-mRNA-1:exon:16263;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60339002 | 60339081 | 60339002 | ID=Msa0611960-mRNA-1:exon:16262;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60339178 | 60339229 | 60339178 | ID=Msa0611960-mRNA-1:exon:16261;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60339435 | 60339572 | 60339435 | ID=Msa0611960-mRNA-1:exon:16260;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60340059 | 60340322 | 60340059 | ID=Msa0611960-mRNA-1:exon:16259;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60341721 | 60341778 | 60341721 | ID=Msa0611960-mRNA-1:exon:16258;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60342108 | 60342217 | 60342108 | ID=Msa0611960-mRNA-1:exon:16257;Parent=Msa0611960-mRNA-1 |
| chr4_2 | exon | 60342305 | 60342678 | 60342305 | ID=Msa0611960-mRNA-1:exon:16256;Parent=Msa0611960-mRNA-1 |
| chr4_2 | five_prime_UTR | 60342521 | 60342678 | 60342521 | ID=Msa0611960-mRNA-1:five_prime_utr;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60342305 | 60342520 | 60342305 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60342108 | 60342217 | 60342108 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60341721 | 60341778 | 60341721 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60340059 | 60340322 | 60340059 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60339435 | 60339572 | 60339435 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60339178 | 60339229 | 60339178 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60339002 | 60339081 | 60339002 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60338195 | 60338254 | 60338195 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60337516 | 60337596 | 60337516 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | CDS | 60337213 | 60337305 | 60337213 | ID=Msa0611960-mRNA-1:cds;Parent=Msa0611960-mRNA-1 |
| chr4_2 | three_prime_UTR | 60336883 | 60337212 | 60336883 | ID=Msa0611960-mRNA-1:three_prime_utr;Parent=Msa0611960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
