Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339560 | XP_003591776.2 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339560 | sp|B9RAJ0|DNPEP_RICCO | 55.624 | 489 | 194 | 6 | 55 | 524 | 6 | 490 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339560 | G7I369 | 97.148 | 526 | 14 | 1 | 1 | 525 | 1 | 526 | 0.0 | 1063 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001420 | Msa1339560 | 0.807238 | 5.571640e-50 | -8.615850e-47 |
| Msa0001540 | Msa1339560 | 0.802942 | 4.414404e-49 | -8.615850e-47 |
| Msa0611960 | Msa1339560 | 0.802589 | 5.223153e-49 | -8.615850e-47 |
| Msa0630090 | Msa1339560 | 0.800264 | 1.563533e-48 | -8.615850e-47 |
| Msa0813310 | Msa1339560 | 0.810737 | 9.933079e-51 | -8.615850e-47 |
| Msa0141770 | Msa1339560 | 0.809954 | 1.465333e-50 | -8.615850e-47 |
| Msa1243860 | Msa1339560 | 0.803903 | 2.791226e-49 | -8.615850e-47 |
| Msa1337950 | Msa1339560 | 0.803118 | 4.060192e-49 | -8.615850e-47 |
| Msa1339560 | Msa1375600 | 0.808376 | 3.192214e-50 | -8.615850e-47 |
| Msa0373950 | Msa1339560 | 0.811563 | 6.575021e-51 | -8.615850e-47 |
| Msa0380440 | Msa1339560 | 0.818749 | 1.666015e-52 | -8.615850e-47 |
| Msa0429560 | Msa1339560 | 0.814311 | 1.643529e-51 | -8.615850e-47 |
| Msa0434630 | Msa1339560 | 0.802136 | 6.474220e-49 | -8.615850e-47 |
| Msa0476150 | Msa1339560 | 0.801890 | 7.274429e-49 | -8.615850e-47 |
| Msa0294170 | Msa1339560 | 0.800003 | 1.767065e-48 | -8.615850e-47 |
| Msa1206440 | Msa1339560 | 0.838799 | 2.320659e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339560 | MtrunA17_Chr1g0198491 | 94.455 | 541 | 14 | 2 | 1 | 525 | 1 | 541 | 0.0 | 1051 |
| Msa1339560 | MtrunA17_Chr3g0116281 | 55.021 | 478 | 196 | 5 | 61 | 524 | 9 | 481 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339560 | AT5G04710.1 | 78.216 | 482 | 99 | 3 | 46 | 524 | 47 | 525 | 0.0 | 802 |
| Msa1339560 | AT5G60160.1 | 58.193 | 476 | 183 | 5 | 61 | 524 | 5 | 476 | 0.0 | 580 |
Find 134 sgRNAs with CRISPR-Local
Find 454 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTTATCTGCAAAATT+TGG | 0.136182 | tig0003352:+50655 | None:intergenic |
| AGAAGATGAGTCTCAAAATT+TGG | 0.216625 | tig0003352:+53571 | None:intergenic |
| TGGTGCACCCACCATGTTTC+AGG | 0.245589 | tig0003352:-51463 | Msa1339560:CDS |
| TTGCCTGAGTTGGAAGGTTT+TGG | 0.257427 | tig0003352:+50521 | None:intergenic |
| CATTAAAACGATTAGAATCT+TGG | 0.283821 | tig0003352:-48879 | Msa1339560:three_prime_UTR |
| AAGAGTAGGAATACGCAAAA+TGG | 0.284264 | tig0003352:+54388 | None:intergenic |
| GATAGGGATTTGAGTGTTGC+AGG | 0.304340 | tig0003352:-54473 | Msa1339560:CDS |
| CGAATGAAGTGTGATGAATT+TGG | 0.317750 | tig0003352:+55803 | None:intergenic |
| CACTCGTAATATGTCTTGTT+TGG | 0.323205 | tig0003352:-55494 | Msa1339560:CDS |
| TCTAACAGTGTCTGCAGATA+TGG | 0.338378 | tig0003352:-50692 | Msa1339560:intron |
| TATGGCATACTTGGTTTGAT+AGG | 0.339877 | tig0003352:-54490 | Msa1339560:CDS |
| AGACTTATGGAGGTGGGTTA+TGG | 0.344088 | tig0003352:-54508 | Msa1339560:CDS |
| TTGTGAATCTCCGGATGATT+TGG | 0.367388 | tig0003352:-51996 | Msa1339560:CDS |
| GAACTTTCTTCCCTAGCATT+TGG | 0.367591 | tig0003352:-48977 | Msa1339560:three_prime_UTR |
| AATTTGGTTTGAAACCTTCC+TGG | 0.386938 | tig0003352:+53587 | None:intergenic |
| ATGGTAAATGTTCAGACTTA+TGG | 0.394816 | tig0003352:-54521 | Msa1339560:CDS |
| TAGGTCCAATACTCGCTTCT+GGG | 0.407232 | tig0003352:-49954 | Msa1339560:CDS |
| TTTGTTCTTAATTTATTAGC+AGG | 0.410447 | tig0003352:-48851 | Msa1339560:three_prime_UTR |
| ATAGGTCCAATACTCGCTTC+TGG | 0.410477 | tig0003352:-49955 | Msa1339560:CDS |
| GTGGAACTAGAATAGGATAT+TGG | 0.413689 | tig0003352:-49059 | Msa1339560:three_prime_UTR |
| TGTTTGGTTGCTTTCGCCGT+TGG | 0.416471 | tig0003352:-55478 | Msa1339560:CDS |
| GTTAACAATGGAAACGGATT+GGG | 0.417308 | tig0003352:+55739 | None:intergenic |
| TCGATTATCTCAACGAATCT+TGG | 0.417500 | tig0003352:-55709 | Msa1339560:CDS |
| GTTGATGCCATGTTTCTGAC+TGG | 0.436244 | tig0003352:+55920 | None:intergenic |
| ATAGTTGTGTTTACTGAGGA+AGG | 0.437899 | tig0003352:-49089 | Msa1339560:three_prime_UTR |
| TTTCTTCCCTAGCATTTGGT+TGG | 0.441117 | tig0003352:-48973 | Msa1339560:three_prime_UTR |
| TTCAAGTTATTGCGCATTGA+GGG | 0.445171 | tig0003352:-52032 | Msa1339560:CDS |
| GAGGTGGGTTATGGCATACT+TGG | 0.446649 | tig0003352:-54499 | Msa1339560:CDS |
| GAAGGCTTCTTCTTATATGA+TGG | 0.447361 | tig0003352:-54540 | Msa1339560:CDS |
| GAGACGTATAGTTGCGAGCT+TGG | 0.450006 | tig0003352:-51436 | Msa1339560:CDS |
| CCAATACTCGCTTCTGGGGT+TGG | 0.454012 | tig0003352:-49949 | Msa1339560:CDS |
| ACAAGTCCTTTCTGCAACTC+TGG | 0.460030 | tig0003352:+50619 | None:intergenic |
| TCAGATTCTGCTCAAGGAGC+TGG | 0.464972 | tig0003352:-51483 | Msa1339560:CDS |
| GAATGAAGTGTGATGAATTT+GGG | 0.466763 | tig0003352:+55804 | None:intergenic |
| CTACTCACTGTAGGAATTCG+TGG | 0.467627 | tig0003352:-50007 | Msa1339560:intron |
| CGTTAACAATGGAAACGGAT+TGG | 0.469284 | tig0003352:+55738 | None:intergenic |
| GGTGCTAGTGGAACTAGAAT+AGG | 0.471894 | tig0003352:-49066 | Msa1339560:three_prime_UTR |
| GGAAGAAAGTTCATTTGCTA+AGG | 0.472814 | tig0003352:+48988 | None:intergenic |
| ATGGCATACTTGGTTTGATA+GGG | 0.475833 | tig0003352:-54489 | Msa1339560:CDS |
| TGAAGGTACGATGTGGGTAA+TGG | 0.478279 | tig0003352:-54629 | Msa1339560:intron |
| ACTATACGCCAATCATTTCT+CGG | 0.479951 | tig0003352:-51378 | Msa1339560:intron |
| CTCTTGCCATTCATCTTGAC+CGG | 0.486089 | tig0003352:-54370 | Msa1339560:intron |
| AGATTGCGGTAGCGAAGAAA+TGG | 0.489273 | tig0003352:+55827 | None:intergenic |
| CAGTGGATGATGAGAAGCTT+TGG | 0.489869 | tig0003352:+53480 | None:intergenic |
| AGTAACGTCCACCTGGTTTG+AGG | 0.492439 | tig0003352:+55521 | None:intergenic |
| CAAAATTTGGATGAACTCCA+TGG | 0.496480 | tig0003352:+50668 | None:intergenic |
| TGTTGACTCTTGTGAATCTC+CGG | 0.497372 | tig0003352:-52005 | Msa1339560:CDS |
| CCAACCCCAGAAGCGAGTAT+TGG | 0.498498 | tig0003352:+49949 | None:intergenic |
| AGAGTAGGAATACGCAAAAT+GGG | 0.505031 | tig0003352:+54389 | None:intergenic |
| GCATAATCCAACCAAATGCT+AGG | 0.505418 | tig0003352:+48966 | None:intergenic |
| CTTCAAGTTATTGCGCATTG+AGG | 0.506033 | tig0003352:-52033 | Msa1339560:CDS |
| ATGGTATACCGAGAAATGAT+TGG | 0.506590 | tig0003352:+51370 | None:intergenic |
| GATACTCAACCTAGCTGCCT+TGG | 0.507943 | tig0003352:-52103 | Msa1339560:CDS |
| TTGCTCAACTTTCAATGCAC+AGG | 0.508431 | tig0003352:-49903 | Msa1339560:intron |
| GCAGTATAAGAGAAATATGT+GGG | 0.509854 | tig0003352:-49231 | Msa1339560:intron |
| TTCTTAATGAAAATGAAGAA+TGG | 0.509917 | tig0003352:-55546 | Msa1339560:CDS |
| TGGCTAGCGAACAAGCGATT+CGG | 0.514344 | tig0003352:-51976 | Msa1339560:CDS |
| AGTTGTGTTTACTGAGGAAG+GGG | 0.516610 | tig0003352:-49087 | Msa1339560:three_prime_UTR |
| TAGAGAGGAATTGCCTGAGT+TGG | 0.517382 | tig0003352:+50511 | None:intergenic |
| TGGACTCATTTCCACGCCAC+AGG | 0.517508 | tig0003352:-55689 | Msa1339560:intron |
| AATGTATTAACAAATGCTCT+CGG | 0.518734 | tig0003352:+48898 | None:intergenic |
| TGAGTGATGGAGATGAAGAA+TGG | 0.519262 | tig0003352:+55873 | None:intergenic |
| CAATTCCACAGTCAACTGTT+CGG | 0.521152 | tig0003352:+49923 | None:intergenic |
| ACTCAACCTAGCTGCCTTGG+AGG | 0.522687 | tig0003352:-52100 | Msa1339560:CDS |
| AGAAGCGAGTATTGGACCTA+TGG | 0.522950 | tig0003352:+49957 | None:intergenic |
| TAGTTGTGTTTACTGAGGAA+GGG | 0.525027 | tig0003352:-49088 | Msa1339560:three_prime_UTR |
| TCATCATCCACTGCTTATGC+AGG | 0.526925 | tig0003352:-53470 | Msa1339560:intron |
| TTGATGCCATGTTTCTGACT+GGG | 0.529382 | tig0003352:+55921 | None:intergenic |
| TGCCATGTTTCTGACTGGGT+GGG | 0.535192 | tig0003352:+55925 | None:intergenic |
| AATCCAAAACCTTCCAACTC+AGG | 0.535938 | tig0003352:-50524 | Msa1339560:intron |
| TTCCACTGGTAGCATAGCGC+TGG | 0.536045 | tig0003352:+50578 | None:intergenic |
| ATAGTACCGGTCAAGATGAA+TGG | 0.542404 | tig0003352:+54364 | None:intergenic |
| TAGCGAAGAAATGGTGATGA+TGG | 0.542884 | tig0003352:+55836 | None:intergenic |
| TTGAGGTTGAGTTTGAGTGA+TGG | 0.543547 | tig0003352:+55860 | None:intergenic |
| TTTGCACCTCCAAGGCAGCT+AGG | 0.544081 | tig0003352:+52094 | None:intergenic |
| GTCCTTTCTGCAACTCTGGT+CGG | 0.548950 | tig0003352:+50623 | None:intergenic |
| TGCAGTATAAGAGAAATATG+TGG | 0.550194 | tig0003352:-49232 | Msa1339560:intron |
| GTGGGTTCAGATTCTGCTCA+AGG | 0.551999 | tig0003352:-51489 | Msa1339560:CDS |
| GTTAGAAATGACATGGGATG+CGG | 0.553592 | tig0003352:-49985 | Msa1339560:CDS |
| GCAAATAACTATGTTGGTGA+AGG | 0.554402 | tig0003352:-51414 | Msa1339560:CDS |
| AATGTTCAGACTTATGGAGG+TGG | 0.554687 | tig0003352:-54515 | Msa1339560:CDS |
| ATTGTTTAGCACAGTGAACC+AGG | 0.556386 | tig0003352:-53605 | Msa1339560:intron |
| CAGATCGTTAACAATGGAAA+CGG | 0.561661 | tig0003352:+55733 | None:intergenic |
| TCGAGTTTCATCGAGAGTAA+AGG | 0.562438 | tig0003352:+53547 | None:intergenic |
| TACTGAGGAAGGGGTGCTAG+TGG | 0.566593 | tig0003352:-49078 | Msa1339560:three_prime_UTR |
| GCTCGCAACTATACGTCTCA+TGG | 0.570595 | tig0003352:+51440 | None:intergenic |
| GAGGAATTGCCTGAGTTGGA+AGG | 0.571426 | tig0003352:+50515 | None:intergenic |
| GCCGAAAACAGCGTCAGTGA+AGG | 0.571596 | tig0003352:-54558 | Msa1339560:CDS |
| ATGCCATGTTTCTGACTGGG+TGG | 0.571839 | tig0003352:+55924 | None:intergenic |
| TGTTCGCTAGCCAAATCATC+CGG | 0.572626 | tig0003352:+51986 | None:intergenic |
| AAGAAGAGATGTGATTCCAC+TGG | 0.575695 | tig0003352:+50564 | None:intergenic |
| ATGGGATGCGGATCAACCAT+AGG | 0.581725 | tig0003352:-49973 | Msa1339560:CDS |
| ATTCATTGTTTGCACCTCCA+AGG | 0.583178 | tig0003352:+52086 | None:intergenic |
| AAACGACAACTAATCGCAGC+TGG | 0.584683 | tig0003352:-55577 | Msa1339560:CDS |
| GGTTGCTCTGTTTGACAATG+AGG | 0.587175 | tig0003352:-51951 | Msa1339560:CDS |
| CACCGACCAGAGTTGCAGAA+AGG | 0.588992 | tig0003352:-50625 | Msa1339560:CDS |
| ACGTCTCATGGCCTGAAACA+TGG | 0.589765 | tig0003352:+51452 | None:intergenic |
| TTCGGCTTCAGTTTCAGACA+TGG | 0.589778 | tig0003352:+54575 | None:intergenic |
| TGTTGTTGAAGGTACGATGT+GGG | 0.589808 | tig0003352:-54635 | Msa1339560:intron |
| GAAATGGTGATGATGGTTTG+AGG | 0.591381 | tig0003352:+55843 | None:intergenic |
| GTGAAGAAGTAACGTCCACC+TGG | 0.592016 | tig0003352:+55514 | None:intergenic |
| ATGTTCAGACTTATGGAGGT+GGG | 0.592042 | tig0003352:-54514 | Msa1339560:CDS |
| ATTCGTGGTTAGAAATGACA+TGG | 0.593807 | tig0003352:-49992 | Msa1339560:CDS |
| GTGTCTGCAGATATGGCCCA+TGG | 0.599082 | tig0003352:-50685 | Msa1339560:CDS |
| CATAATCCAACCAAATGCTA+GGG | 0.600259 | tig0003352:+48967 | None:intergenic |
| TCAAGATGAATGGCAAGAGT+AGG | 0.611001 | tig0003352:+54374 | None:intergenic |
| TATTATAGTTGTGTTTACTG+AGG | 0.616793 | tig0003352:-49093 | Msa1339560:three_prime_UTR |
| TTTAGCACAGTGAACCAGGA+AGG | 0.619667 | tig0003352:-53601 | Msa1339560:intron |
| ATCGAGCAGATCGTTAACAA+TGG | 0.623163 | tig0003352:+55727 | None:intergenic |
| AAAATTTGGATGAACTCCAT+GGG | 0.626689 | tig0003352:+50669 | None:intergenic |
| AGCTTGGCAAATAACTATGT+TGG | 0.628527 | tig0003352:-51420 | Msa1339560:CDS |
| CTTTCTGCAACTCTGGTCGG+TGG | 0.630101 | tig0003352:+50626 | None:intergenic |
| TTGTTGTTGAAGGTACGATG+TGG | 0.636225 | tig0003352:-54636 | Msa1339560:intron |
| GTGATGAATTTGGGAGATTG+CGG | 0.637552 | tig0003352:+55813 | None:intergenic |
| AGGTCCAATACTCGCTTCTG+GGG | 0.638373 | tig0003352:-49953 | Msa1339560:CDS |
| AACCAGCGCTATGCTACCAG+TGG | 0.640942 | tig0003352:-50580 | Msa1339560:CDS |
| GTAAATGTTCAGACTTATGG+AGG | 0.649065 | tig0003352:-54518 | Msa1339560:CDS |
| AACCCACCCAGTCAGAAACA+TGG | 0.652324 | tig0003352:-55927 | Msa1339560:exon |
| CATAGACAAGATGCTGACTG+TGG | 0.652971 | tig0003352:-49149 | Msa1339560:CDS |
| TAGCGAACAAGCGATTCGGA+TGG | 0.653246 | tig0003352:-51972 | Msa1339560:CDS |
| TGCTCTGTTTGACAATGAGG+AGG | 0.654956 | tig0003352:-51948 | Msa1339560:intron |
| GAAGAATGGAACCTCAAACC+AGG | 0.655104 | tig0003352:-55532 | Msa1339560:CDS |
| CTCATGGCCTGAAACATGGT+GGG | 0.659072 | tig0003352:+51456 | None:intergenic |
| ATACGTACCTGCATAAGCAG+TGG | 0.663270 | tig0003352:+53463 | None:intergenic |
| GAAGAATGGAGAAGAATGTG+CGG | 0.674419 | tig0003352:+55887 | None:intergenic |
| TGCTCTCGGAGCAAATAGAG+AGG | 0.675399 | tig0003352:+48912 | None:intergenic |
| GAATGAAGGTACCTGTGGCG+TGG | 0.675955 | tig0003352:+55678 | None:intergenic |
| TTTACTCTCGATGAAACTCG+AGG | 0.679371 | tig0003352:-53545 | Msa1339560:CDS |
| GGCATCCGAACAGTTGACTG+TGG | 0.693632 | tig0003352:-49928 | Msa1339560:CDS |
| TTCGTGGTTAGAAATGACAT+GGG | 0.700502 | tig0003352:-49991 | Msa1339560:CDS |
| GAATGGAACCTCAAACCAGG+TGG | 0.708230 | tig0003352:-55529 | Msa1339560:CDS |
| TCTCATGGCCTGAAACATGG+TGG | 0.711165 | tig0003352:+51455 | None:intergenic |
| TGTCAACTACTATTGCATCA+CGG | 0.718438 | tig0003352:+55964 | None:intergenic |
| CAACTACTATTGCATCACGG+TGG | 0.752235 | tig0003352:+55967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGATATTTGTAAAAAA+AGG | + | tig0003352:50672-50691 | None:intergenic | 10.0% |
| !!! | ATATGTTCTAAAAAAATTAT+TGG | + | tig0003352:51498-51517 | None:intergenic | 10.0% |
| !! | TATGCTATATATAAAAAAAT+AGG | + | tig0003352:54738-54757 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTGTATCT+GGG | - | tig0003352:55085-55104 | Msa1339560:intron | 10.0% |
| !! | TAAATTGACTATAAATAATC+AGG | + | tig0003352:49496-49515 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAATTATTGGTA+AGG | + | tig0003352:51493-51512 | None:intergenic | 15.0% |
| !! | TAGCAATTTCAATTTATATT+TGG | + | tig0003352:51646-51665 | None:intergenic | 15.0% |
| !!! | ATTATTTCGGAAATTTTAAA+AGG | - | tig0003352:51995-52014 | Msa1339560:CDS | 15.0% |
| !! | ATTCGATTATTAAATTGTAA+TGG | + | tig0003352:52102-52121 | None:intergenic | 15.0% |
| !! | AATTTAATAATCGAATGAAT+TGG | - | tig0003352:52106-52125 | Msa1339560:CDS | 15.0% |
| !! | TAAATATTCATTCATAGAAA+GGG | - | tig0003352:52183-52202 | Msa1339560:intron | 15.0% |
| !!! | AATTTTTGTAAAGCAATTAA+AGG | - | tig0003352:52272-52291 | Msa1339560:intron | 15.0% |
| !! | AATATCCAAAATAATAAACA+CGG | + | tig0003352:52423-52442 | None:intergenic | 15.0% |
| !!! | AACAATGAATTTATTTTTTC+TGG | - | tig0003352:52725-52744 | Msa1339560:intron | 15.0% |
| !! | ATAAATAGGATATATCATAA+AGG | + | tig0003352:53202-53221 | None:intergenic | 15.0% |
| !! | ATTTGTCATAAATTTATAAG+AGG | + | tig0003352:53454-53473 | None:intergenic | 15.0% |
| !!! | ATAAAAAAATAGGAGATTTT+GGG | + | tig0003352:54728-54747 | None:intergenic | 15.0% |
| !!! | TATAAAAAAATAGGAGATTT+TGG | + | tig0003352:54729-54748 | None:intergenic | 15.0% |
| !! | TATATAGCATAGATTTATTA+AGG | - | tig0003352:54747-54766 | Msa1339560:intron | 15.0% |
| !! | CAGATACAAAAAAAAAAAAA+AGG | + | tig0003352:55086-55105 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTTTTGTATC+TGG | - | tig0003352:55084-55103 | Msa1339560:intron | 15.0% |
| !!! | GAAAATTGATATTTTTTTTC+TGG | + | tig0003352:55119-55138 | None:intergenic | 15.0% |
| !!! | ATCAATTTTCAATATTTATG+AGG | - | tig0003352:55129-55148 | Msa1339560:intron | 15.0% |
| !!! | ATTCTTCATTTTCATTAAGA+AGG | + | tig0003352:49253-49272 | None:intergenic | 20.0% |
| !! | TTCTTAATGAAAATGAAGAA+TGG | - | tig0003352:49252-49271 | Msa1339560:intron | 20.0% |
| !! | TCAAAATTATATCACTTACT+AGG | - | tig0003352:49519-49538 | Msa1339560:intron | 20.0% |
| !!! | TTTTAACTTTACTGAATATG+TGG | - | tig0003352:49776-49795 | Msa1339560:intron | 20.0% |
| !!! | CTAATTTGCTTATGAAATTT+TGG | - | tig0003352:49840-49859 | Msa1339560:intron | 20.0% |
| !!! | TTGTTTTCATAAGCTTTTTT+TGG | + | tig0003352:50644-50663 | None:intergenic | 20.0% |
| !! | ATTCATCAAACTAAACATTA+TGG | - | tig0003352:50779-50798 | Msa1339560:intron | 20.0% |
| !! | AGTTAATTATAAGCAAATAC+CGG | - | tig0003352:51022-51041 | Msa1339560:intron | 20.0% |
| !! | AGGAATACAAAATATGTATA+AGG | + | tig0003352:52075-52094 | None:intergenic | 20.0% |
| !! | GTAAATATTCATTCATAGAA+AGG | - | tig0003352:52182-52201 | Msa1339560:intron | 20.0% |
| !!! | TAGATAAATAATGGAAAAAG+AGG | - | tig0003352:52310-52329 | Msa1339560:intron | 20.0% |
| !!! | GTGTTTATTATTTTGGATAT+TGG | - | tig0003352:52422-52441 | Msa1339560:intron | 20.0% |
| !! | TATCTGAAAATTAAACACAA+GGG | + | tig0003352:52615-52634 | None:intergenic | 20.0% |
| !! | ATATCTGAAAATTAAACACA+AGG | + | tig0003352:52616-52635 | None:intergenic | 20.0% |
| !!! | CTATGATTTTTTTCTTTTAG+GGG | + | tig0003352:53128-53147 | None:intergenic | 20.0% |
| !!! | GCTATGATTTTTTTCTTTTA+GGG | + | tig0003352:53129-53148 | None:intergenic | 20.0% |
| !!! | TGCTATGATTTTTTTCTTTT+AGG | + | tig0003352:53130-53149 | None:intergenic | 20.0% |
| !! | AAAAAAATCATAGCAATCAT+CGG | - | tig0003352:53135-53154 | Msa1339560:intron | 20.0% |
| !!! | AAATTATGGATTAGTTAAAG+AGG | - | tig0003352:53592-53611 | Msa1339560:CDS | 20.0% |
| !!! | AATTATGGATTAGTTAAAGA+GGG | - | tig0003352:53593-53612 | Msa1339560:CDS | 20.0% |
| !!! | TTATACATGAATTTGTTTCA+GGG | - | tig0003352:53866-53885 | Msa1339560:intron | 20.0% |
| !! | CAATACAAAAGTTAATTTAG+TGG | + | tig0003352:54082-54101 | None:intergenic | 20.0% |
| !! | ATACTAGCAAAAATTATGAA+TGG | - | tig0003352:54484-54503 | Msa1339560:CDS | 20.0% |
| !!! | AAAGATAAACATGATTTGTT+GGG | + | tig0003352:54581-54600 | None:intergenic | 20.0% |
| !!! | AAAAGATAAACATGATTTGT+TGG | + | tig0003352:54582-54601 | None:intergenic | 20.0% |
| !! | TATTATATTTGCCATATTGT+TGG | + | tig0003352:54614-54633 | None:intergenic | 20.0% |
| !!! | TTCCTATAGTAATGTTTTTT+TGG | + | tig0003352:54665-54684 | None:intergenic | 20.0% |
| !!! | TAAAGGTTTTGATAAGTTAT+TGG | + | tig0003352:54959-54978 | None:intergenic | 20.0% |
| !! | TTTGTTCTTAATTTATTAGC+AGG | - | tig0003352:55947-55966 | Msa1339560:five_prime_UTR | 20.0% |
| ! | AATATGGAGAATAATAGCAA+TGG | + | tig0003352:49145-49164 | None:intergenic | 25.0% |
| ! | AGTTAAGTGATATAACTCAT+TGG | + | tig0003352:49575-49594 | None:intergenic | 25.0% |
| !!! | TTTGCTTATGAAATTTTGGT+TGG | - | tig0003352:49844-49863 | Msa1339560:intron | 25.0% |
| !!! | TTGCTTATGAAATTTTGGTT+GGG | - | tig0003352:49845-49864 | Msa1339560:intron | 25.0% |
| ! | GTTGCAATTATAATTGTACA+TGG | + | tig0003352:49892-49911 | None:intergenic | 25.0% |
| ! | ACATCAATGTTAGTTCATTA+AGG | + | tig0003352:49956-49975 | None:intergenic | 25.0% |
| ! | TTAATGAACTAACATTGATG+TGG | - | tig0003352:49955-49974 | Msa1339560:CDS | 25.0% |
| !! | ATATGTAATAGCCTCTATTT+TGG | - | tig0003352:50015-50034 | Msa1339560:intron | 25.0% |
| !! | TATGTAATAGCCTCTATTTT+GGG | - | tig0003352:50016-50035 | Msa1339560:intron | 25.0% |
| !! | TTGTTATTATTATCTGCTGA+TGG | - | tig0003352:50113-50132 | Msa1339560:intron | 25.0% |
| ! | GATGATAGTTAGTTAGTATT+AGG | + | tig0003352:50746-50765 | None:intergenic | 25.0% |
| ! | CCTGTAGAACATTATTATTT+CGG | - | tig0003352:51982-52001 | Msa1339560:CDS | 25.0% |
| !! | AAAATCACAGAATTTTCCAT+GGG | + | tig0003352:52029-52048 | None:intergenic | 25.0% |
| !!! | TATTAAATTGTAATGGACTG+AGG | + | tig0003352:52095-52114 | None:intergenic | 25.0% |
| ! | AGTCAAATAAGTTTATCTCT+TGG | - | tig0003352:52457-52476 | Msa1339560:intron | 25.0% |
| ! | TAGCAATTGATATTGTACAA+TGG | - | tig0003352:52485-52504 | Msa1339560:intron | 25.0% |
| ! | AGCAATTGATATTGTACAAT+GGG | - | tig0003352:52486-52505 | Msa1339560:intron | 25.0% |
| !! | TAATTTTCAGATATTGTCAG+AGG | - | tig0003352:52622-52641 | Msa1339560:intron | 25.0% |
| ! | GATATATCCTATTTATGAGT+TGG | - | tig0003352:53206-53225 | Msa1339560:intron | 25.0% |
| ! | CATTATACCAACTCATAAAT+AGG | + | tig0003352:53216-53235 | None:intergenic | 25.0% |
| ! | GTCATAAATTTATAAGAGGA+TGG | + | tig0003352:53450-53469 | None:intergenic | 25.0% |
| ! | TCAGTACTTCAATCTTATTA+AGG | - | tig0003352:53688-53707 | Msa1339560:intron | 25.0% |
| ! | CAGTACTTCAATCTTATTAA+GGG | - | tig0003352:53689-53708 | Msa1339560:intron | 25.0% |
| ! | AGTACTTCAATCTTATTAAG+GGG | - | tig0003352:53690-53709 | Msa1339560:intron | 25.0% |
| ! | CAAAAACAGAATAAATGCTA+GGG | + | tig0003352:53738-53757 | None:intergenic | 25.0% |
| ! | TTCTGTTTACTAGATCTATT+GGG | - | tig0003352:53765-53784 | Msa1339560:intron | 25.0% |
| !! | GGGATGTCAATTTAAATTTT+TGG | - | tig0003352:53785-53804 | Msa1339560:intron | 25.0% |
| !! | CTTATACATGAATTTGTTTC+AGG | - | tig0003352:53865-53884 | Msa1339560:intron | 25.0% |
| !!! | TCTCTTCTTTTTAAAGAAGT+TGG | - | tig0003352:54248-54267 | Msa1339560:intron | 25.0% |
| !!! | CTCTTCTTTTTAAAGAAGTT+GGG | - | tig0003352:54249-54268 | Msa1339560:intron | 25.0% |
| ! | CAAAATGAGAAATAATAGAG+AGG | + | tig0003352:54305-54324 | None:intergenic | 25.0% |
| !! | TCTATTGCTAGAGATTATTT+TGG | + | tig0003352:54424-54443 | None:intergenic | 25.0% |
| !!! | CTATAGTAATGTTTTTTTGG+TGG | + | tig0003352:54662-54681 | None:intergenic | 25.0% |
| ! | CACCAAAAAAACATTACTAT+AGG | - | tig0003352:54660-54679 | Msa1339560:intron | 25.0% |
| !! | GGTTACAATTTATACCTTTT+CGG | + | tig0003352:55012-55031 | None:intergenic | 25.0% |
| ! | TAAGACAGAGAAGAAATTAA+GGG | + | tig0003352:55406-55425 | None:intergenic | 25.0% |
| ! | ATAAGACAGAGAAGAAATTA+AGG | + | tig0003352:55407-55426 | None:intergenic | 25.0% |
| !! | AGAAAAAACCATTCTGAAAA+AGG | - | tig0003352:55458-55477 | Msa1339560:intron | 25.0% |
| !!! | TAACAATTCCTTTTTCAGAA+TGG | + | tig0003352:55469-55488 | None:intergenic | 25.0% |
| ! | GACAATCTATATAATATCCT+TGG | + | tig0003352:55525-55544 | None:intergenic | 25.0% |
| ! | TATTATAGTTGTGTTTACTG+AGG | - | tig0003352:55705-55724 | Msa1339560:CDS | 25.0% |
| !!! | TTTTAGGATAACTTTGTTCT+CGG | + | tig0003352:55790-55809 | None:intergenic | 25.0% |
| ! | AATGTATTAACAAATGCTCT+CGG | + | tig0003352:55903-55922 | None:intergenic | 25.0% |
| ! | CATTAAAACGATTAGAATCT+TGG | - | tig0003352:55919-55938 | Msa1339560:exon | 25.0% |
| GAATGAAGTGTGATGAATTT+GGG | + | tig0003352:48997-49016 | None:intergenic | 30.0% | |
| GAATAATAGCAATGGAATGA+AGG | + | tig0003352:49137-49156 | None:intergenic | 30.0% | |
| TTGGAGATTTACTTGTAATG+TGG | + | tig0003352:49368-49387 | None:intergenic | 30.0% | |
| ACAGTAAGCGATATAATTCA+AGG | + | tig0003352:49608-49627 | None:intergenic | 30.0% | |
| ACATCAATGCTACCATATTT+GGG | - | tig0003352:49816-49835 | Msa1339560:intron | 30.0% | |
| AAGCAAATTAGTCCCAAATA+TGG | + | tig0003352:49831-49850 | None:intergenic | 30.0% | |
| ! | ATTGTACATGGACTAATTAC+TGG | + | tig0003352:49880-49899 | None:intergenic | 30.0% |
| ! | CTGATTTGCCTTAGAAATTT+AGG | + | tig0003352:49932-49951 | None:intergenic | 30.0% |
| ! | ATGTAATAGCCTCTATTTTG+GGG | - | tig0003352:50017-50036 | Msa1339560:intron | 30.0% |
| CAAGAGTGAATAAGCATAAT+TGG | + | tig0003352:50096-50115 | None:intergenic | 30.0% | |
| ATGGTAAATGTTCAGACTTA+TGG | - | tig0003352:50277-50296 | Msa1339560:intron | 30.0% | |
| ATGAATGTGAGTTATAGTAC+CGG | + | tig0003352:50450-50469 | None:intergenic | 30.0% | |
| TTCAATTACAACTCCTACTT+AGG | - | tig0003352:50498-50517 | Msa1339560:intron | 30.0% | |
| CTAACAATAAAAACAGGCTA+TGG | + | tig0003352:50617-50636 | None:intergenic | 30.0% | |
| AGTTAGTATTAGGTCATGTT+TGG | + | tig0003352:50736-50755 | None:intergenic | 30.0% | |
| ACATGCATTACAAATCATAG+GGG | + | tig0003352:50881-50900 | None:intergenic | 30.0% | |
| CACATGCATTACAAATCATA+GGG | + | tig0003352:50882-50901 | None:intergenic | 30.0% | |
| ACACATGCATTACAAATCAT+AGG | + | tig0003352:50883-50902 | None:intergenic | 30.0% | |
| GATGAATAAATCAGTGGTTA+AGG | + | tig0003352:50921-50940 | None:intergenic | 30.0% | |
| !! | ACCACTGATTTATTCATCAA+TGG | - | tig0003352:50923-50942 | Msa1339560:intron | 30.0% |
| ACCATTGATGAATAAATCAG+TGG | + | tig0003352:50927-50946 | None:intergenic | 30.0% | |
| ! | AGGATAGAACAAATGTTTTC+CGG | + | tig0003352:51044-51063 | None:intergenic | 30.0% |
| AAACATTTGTTCTATCCTTG+AGG | - | tig0003352:51046-51065 | Msa1339560:intron | 30.0% | |
| AACATTTGTTCTATCCTTGA+GGG | - | tig0003352:51047-51066 | Msa1339560:intron | 30.0% | |
| AGAAGATGAGTCTCAAAATT+TGG | + | tig0003352:51230-51249 | None:intergenic | 30.0% | |
| TTCAAACTCAAGTCAAAAGA+AGG | + | tig0003352:51368-51387 | None:intergenic | 30.0% | |
| TGTTCATGAATTCAAACTAG+TGG | - | tig0003352:51431-51450 | Msa1339560:CDS | 30.0% | |
| AATTATTGGTAAGGTATGCA+TGG | + | tig0003352:51484-51503 | None:intergenic | 30.0% | |
| AAGAAATCGATAGTTGTAGA+TGG | + | tig0003352:51544-51563 | None:intergenic | 30.0% | |
| TTCTATCTTCTACTGAATCT+AGG | + | tig0003352:51598-51617 | None:intergenic | 30.0% | |
| GCTATATACTATAGTTCCTT+AGG | - | tig0003352:51662-51681 | Msa1339560:intron | 30.0% | |
| AGATATCTATGTTGTACCTA+AGG | + | tig0003352:51681-51700 | None:intergenic | 30.0% | |
| !!! | TAGTTGGTTTTCCTATTCTT+CGG | - | tig0003352:51782-51801 | Msa1339560:intron | 30.0% |
| CCGAAATAATAATGTTCTAC+AGG | + | tig0003352:51985-52004 | None:intergenic | 30.0% | |
| ! | GAAAATCACAGAATTTTCCA+TGG | + | tig0003352:52030-52049 | None:intergenic | 30.0% |
| ! | GATTTTCTTAACCAATGTCT+TGG | - | tig0003352:52043-52062 | Msa1339560:CDS | 30.0% |
| TAAGGAAAATACCAAGACAT+TGG | + | tig0003352:52057-52076 | None:intergenic | 30.0% | |
| ATATTCGCATGCATTTCAAT+AGG | + | tig0003352:52147-52166 | None:intergenic | 30.0% | |
| GCAGAGTAGTAGATAAATAA+TGG | - | tig0003352:52301-52320 | Msa1339560:intron | 30.0% | |
| TGAATTCAAGTGTCATCATT+GGG | + | tig0003352:52397-52416 | None:intergenic | 30.0% | |
| ATGAATTCAAGTGTCATCAT+TGG | + | tig0003352:52398-52417 | None:intergenic | 30.0% | |
| ! | CATAGCCGTGTTTATTATTT+TGG | - | tig0003352:52415-52434 | Msa1339560:intron | 30.0% |
| ! | TCTTTTGCACACTTAAGTAT+CGG | - | tig0003352:52913-52932 | Msa1339560:intron | 30.0% |
| TTTCCATCAGTTTGAAAGAA+CGG | + | tig0003352:53075-53094 | None:intergenic | 30.0% | |
| TAGCTATGCTCTATAATAGA+AGG | + | tig0003352:53549-53568 | None:intergenic | 30.0% | |
| TCCTAAGAAAGCTCAAATTA+TGG | - | tig0003352:53578-53597 | Msa1339560:CDS | 30.0% | |
| TCCATAATTTGAGCTTTCTT+AGG | + | tig0003352:53582-53601 | None:intergenic | 30.0% | |
| ATGGCTGAAATTGATAAAAG+AGG | - | tig0003352:53632-53651 | Msa1339560:intron | 30.0% | |
| !! | AGATTGAAGTACTGAACAAA+TGG | + | tig0003352:53683-53702 | None:intergenic | 30.0% |
| CCAAAAACAGAATAAATGCT+AGG | + | tig0003352:53739-53758 | None:intergenic | 30.0% | |
| ! | CCTAGCATTTATTCTGTTTT+TGG | - | tig0003352:53736-53755 | Msa1339560:intron | 30.0% |
| CTTCTGTTTACTAGATCTAT+TGG | - | tig0003352:53764-53783 | Msa1339560:intron | 30.0% | |
| ATATTGCAGGACGAAATTAT+CGG | + | tig0003352:53906-53925 | None:intergenic | 30.0% | |
| ! | TGATAAAAGAGCACATTCAA+TGG | - | tig0003352:53972-53991 | Msa1339560:intron | 30.0% |
| AAAATTTGGATGAACTCCAT+GGG | + | tig0003352:54132-54151 | None:intergenic | 30.0% | |
| TCATGCTTATCTGCAAAATT+TGG | + | tig0003352:54146-54165 | None:intergenic | 30.0% | |
| TTTCAATGTCACCAACAATA+TGG | - | tig0003352:54600-54619 | Msa1339560:CDS | 30.0% | |
| ! | CTATAGGAAAATTTGTTCAG+TGG | - | tig0003352:54676-54695 | Msa1339560:intron | 30.0% |
| !! | AAAAATAGGAGATTTTGGGT+TGG | + | tig0003352:54724-54743 | None:intergenic | 30.0% |
| ! | ATATTTTGTCTACTCACTGT+AGG | - | tig0003352:54782-54801 | Msa1339560:intron | 30.0% |
| CATATGACAAGGTTTCATAA+AGG | + | tig0003352:54976-54995 | None:intergenic | 30.0% | |
| GTATAAATTGTAACCATGTC+TGG | - | tig0003352:55017-55036 | Msa1339560:intron | 30.0% | |
| !! | TGAGGTTTGACTTAATCTTT+TGG | - | tig0003352:55147-55166 | Msa1339560:intron | 30.0% |
| !!! | TGACTTAATCTTTTGGAATC+AGG | - | tig0003352:55154-55173 | Msa1339560:intron | 30.0% |
| !!! | AATCTTTTGGAATCAGGTAT+TGG | - | tig0003352:55160-55179 | Msa1339560:intron | 30.0% |
| GTAAGGCAACAAATATTGAA+TGG | + | tig0003352:55262-55281 | None:intergenic | 30.0% | |
| ! | AATATTTGTTGCCTTACTCT+TGG | - | tig0003352:55265-55284 | Msa1339560:intron | 30.0% |
| CATATATAATATTAGCCGAG+CGG | + | tig0003352:55379-55398 | None:intergenic | 30.0% | |
| AAGACAGAGAAGAAATTAAG+GGG | + | tig0003352:55405-55424 | None:intergenic | 30.0% | |
| ! | CTATATAATATCCTTGGTGT+AGG | + | tig0003352:55519-55538 | None:intergenic | 30.0% |
| TGCAGTATAAGAGAAATATG+TGG | - | tig0003352:55566-55585 | Msa1339560:CDS | 30.0% | |
| GCAGTATAAGAGAAATATGT+GGG | - | tig0003352:55567-55586 | Msa1339560:CDS | 30.0% | |
| !! | AGTTCATTTGCTAAGGTTTT+AGG | + | tig0003352:55806-55825 | None:intergenic | 30.0% |
| TGTCAACTACTATTGCATCA+CGG | + | tig0003352:48837-48856 | None:intergenic | 35.0% | |
| CGAATGAAGTGTGATGAATT+TGG | + | tig0003352:48998-49017 | None:intergenic | 35.0% | |
| !! | TTTTGAAGATGTGGAATTGG+TGG | + | tig0003352:49038-49057 | None:intergenic | 35.0% |
| !! | GGATTTTGAAGATGTGGAAT+TGG | + | tig0003352:49041-49060 | None:intergenic | 35.0% |
| ! | GTTAACAATGGAAACGGATT+GGG | + | tig0003352:49062-49081 | None:intergenic | 35.0% |
| CAGATCGTTAACAATGGAAA+CGG | + | tig0003352:49068-49087 | None:intergenic | 35.0% | |
| TCGATTATCTCAACGAATCT+TGG | - | tig0003352:49089-49108 | Msa1339560:three_prime_UTR | 35.0% | |
| ! | GGAAGGGTATAAATGGAATA+TGG | + | tig0003352:49161-49180 | None:intergenic | 35.0% |
| ! | TTCAGAAGGAAGGGTATAAA+TGG | + | tig0003352:49168-49187 | None:intergenic | 35.0% |
| !! | AAGGTTAGTTTCAGAAGGAA+GGG | + | tig0003352:49177-49196 | None:intergenic | 35.0% |
| !! | AAAGGTTAGTTTCAGAAGGA+AGG | + | tig0003352:49178-49197 | None:intergenic | 35.0% |
| ! | CACTCGTAATATGTCTTGTT+TGG | - | tig0003352:49304-49323 | Msa1339560:intron | 35.0% |
| !! | TGAAACTCACTTTTGTCCAA+CGG | + | tig0003352:49339-49358 | None:intergenic | 35.0% |
| CTCGACATAATTCAAAATCG+TGG | + | tig0003352:49443-49462 | None:intergenic | 35.0% | |
| ! | TTCTACTAACTTGTAAGGAC+TGG | + | tig0003352:49635-49654 | None:intergenic | 35.0% |
| AGTCCTTACAAGTTAGTAGA+AGG | - | tig0003352:49634-49653 | Msa1339560:intron | 35.0% | |
| TTAGTAGAAGGACCAAGTTA+TGG | - | tig0003352:49646-49665 | Msa1339560:intron | 35.0% | |
| TAGTAGAAGGACCAAGTTAT+GGG | - | tig0003352:49647-49666 | Msa1339560:intron | 35.0% | |
| TTGCCTATTCGCAAATTACA+AGG | - | tig0003352:49695-49714 | Msa1339560:intron | 35.0% | |
| TGCCTATTCGCAAATTACAA+GGG | - | tig0003352:49696-49715 | Msa1339560:intron | 35.0% | |
| !! | CAAATATGGTAGCATTGATG+TGG | + | tig0003352:49817-49836 | None:intergenic | 35.0% |
| CACATCAATGCTACCATATT+TGG | - | tig0003352:49815-49834 | Msa1339560:intron | 35.0% | |
| CTTAGAAATTTAGGTCATCG+GGG | + | tig0003352:49923-49942 | None:intergenic | 35.0% | |
| CCTTAGAAATTTAGGTCATC+GGG | + | tig0003352:49924-49943 | None:intergenic | 35.0% | |
| GCCTTAGAAATTTAGGTCAT+CGG | + | tig0003352:49925-49944 | None:intergenic | 35.0% | |
| CAAATACATCCCCAAAATAG+AGG | + | tig0003352:50029-50048 | None:intergenic | 35.0% | |
| !! | TTATTATCTGCTGATGGACT+TGG | - | tig0003352:50119-50138 | Msa1339560:intron | 35.0% |
| !! | TGCTTTGTTGTTGTTGTTGA+AGG | - | tig0003352:50152-50171 | Msa1339560:intron | 35.0% |
| GAAGGCTTCTTCTTATATGA+TGG | - | tig0003352:50258-50277 | Msa1339560:intron | 35.0% | |
| GTAAATGTTCAGACTTATGG+AGG | - | tig0003352:50280-50299 | Msa1339560:intron | 35.0% | |
| ! | TATGGCATACTTGGTTTGAT+AGG | - | tig0003352:50308-50327 | Msa1339560:intron | 35.0% |
| ! | ATGGCATACTTGGTTTGATA+GGG | - | tig0003352:50309-50328 | Msa1339560:intron | 35.0% |
| AGAGTAGGAATACGCAAAAT+GGG | + | tig0003352:50412-50431 | None:intergenic | 35.0% | |
| AAGAGTAGGAATACGCAAAA+TGG | + | tig0003352:50413-50432 | None:intergenic | 35.0% | |
| CTTGTGATGAGACTGTTTAT+CGG | - | tig0003352:50565-50584 | Msa1339560:CDS | 35.0% | |
| GGAGAGCTAACAATAAAAAC+AGG | + | tig0003352:50623-50642 | None:intergenic | 35.0% | |
| CTAAACATTATGGTTCAGTG+AGG | - | tig0003352:50789-50808 | Msa1339560:intron | 35.0% | |
| AATCAGTGGTTAAGGACTTA+AGG | + | tig0003352:50913-50932 | None:intergenic | 35.0% | |
| TGGTTAATCACTTACTTCAG+AGG | - | tig0003352:50943-50962 | Msa1339560:intron | 35.0% | |
| ACAATGAAACACACATGAGA+CGG | + | tig0003352:51178-51197 | None:intergenic | 35.0% | |
| !! | AATTTGGTTTGAAACCTTCC+TGG | + | tig0003352:51214-51233 | None:intergenic | 35.0% |
| GAACACGAAAGATTGTTCAA+AGG | + | tig0003352:51416-51435 | None:intergenic | 35.0% | |
| CTGTACTACGAGGAAAAAAT+GGG | + | tig0003352:51575-51594 | None:intergenic | 35.0% | |
| ATAGGAAAACCAACTATAGC+AGG | + | tig0003352:51778-51797 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCCTATTCTTC+GGG | - | tig0003352:51783-51802 | Msa1339560:intron | 35.0% |
| ATCACAACCAGATATCAGTA+TGG | - | tig0003352:51811-51830 | Msa1339560:intron | 35.0% | |
| TACAGTACCATACTGATATC+TGG | + | tig0003352:51821-51840 | None:intergenic | 35.0% | |
| GCAATAACAACTCAAGAATG+TGG | + | tig0003352:51865-51884 | None:intergenic | 35.0% | |
| CATTGAGACCTTTCAAATCA+CGG | - | tig0003352:51900-51919 | Msa1339560:intron | 35.0% | |
| ATTGAGACCTTTCAAATCAC+GGG | - | tig0003352:51901-51920 | Msa1339560:intron | 35.0% | |
| TATAAGACCCGTGATTTGAA+AGG | + | tig0003352:51911-51930 | None:intergenic | 35.0% | |
| ! | AAATCACGGGTCTTATACTT+GGG | - | tig0003352:51914-51933 | Msa1339560:intron | 35.0% |
| TGAAATGCATGCGAATATGT+TGG | - | tig0003352:52149-52168 | Msa1339560:CDS | 35.0% | |
| !! | CAAAGAGCATTATGTGGAAT+TGG | - | tig0003352:52336-52355 | Msa1339560:intron | 35.0% |
| GCAAGCTACATTTAATGTCA+GGG | + | tig0003352:52561-52580 | None:intergenic | 35.0% | |
| AGCAAGCTACATTTAATGTC+AGG | + | tig0003352:52562-52581 | None:intergenic | 35.0% | |
| ! | TTCAAGTTATTGCGCATTGA+GGG | - | tig0003352:52766-52785 | Msa1339560:intron | 35.0% |
| GAAAGAACGGTTTATTGCAT+AGG | + | tig0003352:53062-53081 | None:intergenic | 35.0% | |
| AAACCGTTCTTTCAAACTGA+TGG | - | tig0003352:53069-53088 | Msa1339560:intron | 35.0% | |
| AGCTTGGCAAATAACTATGT+TGG | - | tig0003352:53378-53397 | Msa1339560:intron | 35.0% | |
| ! | GCAAATAACTATGTTGGTGA+AGG | - | tig0003352:53384-53403 | Msa1339560:intron | 35.0% |
| ACTATACGCCAATCATTTCT+CGG | - | tig0003352:53420-53439 | Msa1339560:intron | 35.0% | |
| ATGGTATACCGAGAAATGAT+TGG | + | tig0003352:53431-53450 | None:intergenic | 35.0% | |
| TGCGTGTAATTCCAACATTA+AGG | - | tig0003352:53498-53517 | Msa1339560:CDS | 35.0% | |
| GCGTGTAATTCCAACATTAA+GGG | - | tig0003352:53499-53518 | Msa1339560:CDS | 35.0% | |
| TTGCAATCAACCCTTAATGT+TGG | + | tig0003352:53512-53531 | None:intergenic | 35.0% | |
| !! | TGGATTAGTTAAAGAGGGTA+TGG | - | tig0003352:53598-53617 | Msa1339560:CDS | 35.0% |
| !! | GGATTAGTTAAAGAGGGTAT+GGG | - | tig0003352:53599-53618 | Msa1339560:CDS | 35.0% |
| ! | GATTAGTTAAAGAGGGTATG+GGG | - | tig0003352:53600-53619 | Msa1339560:intron | 35.0% |
| ! | TAAGGGGTGTAATGTGATTA+AGG | - | tig0003352:53706-53725 | Msa1339560:intron | 35.0% |
| GATAATTTCGTCCTGCAATA+TGG | - | tig0003352:53905-53924 | Msa1339560:intron | 35.0% | |
| TCATGGGAGACAACAAATTA+CGG | + | tig0003352:54045-54064 | None:intergenic | 35.0% | |
| TCTCCCATGATATTCTGAAT+GGG | - | tig0003352:54055-54074 | Msa1339560:intron | 35.0% | |
| CAAAATTTGGATGAACTCCA+TGG | + | tig0003352:54133-54152 | None:intergenic | 35.0% | |
| ATTCGTGGTTAGAAATGACA+TGG | - | tig0003352:54806-54825 | Msa1339560:intron | 35.0% | |
| TTCGTGGTTAGAAATGACAT+GGG | - | tig0003352:54807-54826 | Msa1339560:intron | 35.0% | |
| ! | CAAATATTGAATGGTAACGC+AGG | + | tig0003352:55253-55272 | None:intergenic | 35.0% |
| ATCTAGACATGCTTCACAAT+TGG | - | tig0003352:55327-55346 | Msa1339560:intron | 35.0% | |
| AGACAGAGAAGAAATTAAGG+GGG | + | tig0003352:55404-55423 | None:intergenic | 35.0% | |
| ATAGTTGTGTTTACTGAGGA+AGG | - | tig0003352:55709-55728 | Msa1339560:CDS | 35.0% | |
| TAGTTGTGTTTACTGAGGAA+GGG | - | tig0003352:55710-55729 | Msa1339560:CDS | 35.0% | |
| GTGGAACTAGAATAGGATAT+TGG | - | tig0003352:55739-55758 | Msa1339560:CDS | 35.0% | |
| ! | GGAAGAAAGTTCATTTGCTA+AGG | + | tig0003352:55813-55832 | None:intergenic | 35.0% |
| CATAATCCAACCAAATGCTA+GGG | + | tig0003352:55834-55853 | None:intergenic | 35.0% | |
| ! | TTGATGCCATGTTTCTGACT+GGG | + | tig0003352:48880-48899 | None:intergenic | 40.0% |
| GAAGAATGGAGAAGAATGTG+CGG | + | tig0003352:48914-48933 | None:intergenic | 40.0% | |
| ! | TGAGTGATGGAGATGAAGAA+TGG | + | tig0003352:48928-48947 | None:intergenic | 40.0% |
| TTGAGGTTGAGTTTGAGTGA+TGG | + | tig0003352:48941-48960 | None:intergenic | 40.0% | |
| !! | GAAATGGTGATGATGGTTTG+AGG | + | tig0003352:48958-48977 | None:intergenic | 40.0% |
| ! | TAGCGAAGAAATGGTGATGA+TGG | + | tig0003352:48965-48984 | None:intergenic | 40.0% |
| GTGATGAATTTGGGAGATTG+CGG | + | tig0003352:48988-49007 | None:intergenic | 40.0% | |
| !! | GGATTGGGATTTTGAAGATG+TGG | + | tig0003352:49047-49066 | None:intergenic | 40.0% |
| CGTTAACAATGGAAACGGAT+TGG | + | tig0003352:49063-49082 | None:intergenic | 40.0% | |
| ATCGAGCAGATCGTTAACAA+TGG | + | tig0003352:49074-49093 | None:intergenic | 40.0% | |
| !! | GCGAAAAGGTTAGTTTCAGA+AGG | + | tig0003352:49182-49201 | None:intergenic | 40.0% |
| ! | ATCGACTCCTACAATTTCAG+GGG | + | tig0003352:49397-49416 | None:intergenic | 40.0% |
| ! | GATCGACTCCTACAATTTCA+GGG | + | tig0003352:49398-49417 | None:intergenic | 40.0% |
| ! | TGATCGACTCCTACAATTTC+AGG | + | tig0003352:49399-49418 | None:intergenic | 40.0% |
| TGTCGAGCAACTTGATCATT+TGG | - | tig0003352:49456-49475 | Msa1339560:intron | 40.0% | |
| ! | GGTCCTTCTACTAACTTGTA+AGG | + | tig0003352:49640-49659 | None:intergenic | 40.0% |
| TTGAATGACGTCCCATAACT+TGG | + | tig0003352:49661-49680 | None:intergenic | 40.0% | |
| TATGGGACGTCATTCAAAAC+AGG | - | tig0003352:49664-49683 | Msa1339560:intron | 40.0% | |
| ATGGGACGTCATTCAAAACA+GGG | - | tig0003352:49665-49684 | Msa1339560:intron | 40.0% | |
| ! | CACCCTTGTAATTTGCGAAT+AGG | + | tig0003352:49701-49720 | None:intergenic | 40.0% |
| TTGATGTGGAATCTACGTAG+AGG | + | tig0003352:49803-49822 | None:intergenic | 40.0% | |
| CCCGATGACCTAAATTTCTA+AGG | - | tig0003352:49921-49940 | Msa1339560:CDS | 40.0% | |
| TGCGATATGTTTAGTCAACG+TGG | - | tig0003352:49991-50010 | Msa1339560:CDS | 40.0% | |
| ! | GACTGCTGCTTACAATTTCT+AGG | - | tig0003352:50069-50088 | Msa1339560:intron | 40.0% |
| ! | TTGTTGTTGAAGGTACGATG+TGG | - | tig0003352:50162-50181 | Msa1339560:intron | 40.0% |
| ! | TGTTGTTGAAGGTACGATGT+GGG | - | tig0003352:50163-50182 | Msa1339560:intron | 40.0% |
| AATGTTCAGACTTATGGAGG+TGG | - | tig0003352:50283-50302 | Msa1339560:intron | 40.0% | |
| ATGTTCAGACTTATGGAGGT+GGG | - | tig0003352:50284-50303 | Msa1339560:intron | 40.0% | |
| TCAAGATGAATGGCAAGAGT+AGG | + | tig0003352:50427-50446 | None:intergenic | 40.0% | |
| !! | ATAGTACCGGTCAAGATGAA+TGG | + | tig0003352:50437-50456 | None:intergenic | 40.0% |
| AACTCCTACTTAGGCTTCTT+TGG | - | tig0003352:50507-50526 | Msa1339560:intron | 40.0% | |
| CAATCCAAAGAAGCCTAAGT+AGG | + | tig0003352:50514-50533 | None:intergenic | 40.0% | |
| TTGAGACTACTGCTCACTTT+AGG | + | tig0003352:50822-50841 | None:intergenic | 40.0% | |
| AAAACCAGACATTTCCCTCA+AGG | + | tig0003352:51064-51083 | None:intergenic | 40.0% | |
| ATTGTTTAGCACAGTGAACC+AGG | - | tig0003352:51193-51212 | Msa1339560:intron | 40.0% | |
| TCGAGTTTCATCGAGAGTAA+AGG | + | tig0003352:51254-51273 | None:intergenic | 40.0% | |
| TTTACTCTCGATGAAACTCG+AGG | - | tig0003352:51253-51272 | Msa1339560:intron | 40.0% | |
| GCTGTACTACGAGGAAAAAA+TGG | + | tig0003352:51576-51595 | None:intergenic | 40.0% | |
| AAGAAACATCATTCAGAGCC+TGG | - | tig0003352:51715-51734 | Msa1339560:intron | 40.0% | |
| ! | CAAATCACGGGTCTTATACT+TGG | - | tig0003352:51913-51932 | Msa1339560:intron | 40.0% |
| GTTGTGCTAACTGTGATCTT+AGG | - | tig0003352:51936-51955 | Msa1339560:intron | 40.0% | |
| TGTGATCTTAGGAAGAGCAA+TGG | - | tig0003352:51947-51966 | Msa1339560:intron | 40.0% | |
| CTTAGGAAGAGCAATGGTTA+AGG | - | tig0003352:51953-51972 | Msa1339560:CDS | 40.0% | |
| ! | TTAAAAGGTGCACTTTCCCA+TGG | - | tig0003352:52010-52029 | Msa1339560:CDS | 40.0% |
| ATGCATGCGAATATGTTGGA+AGG | - | tig0003352:52153-52172 | Msa1339560:CDS | 40.0% | |
| TAGAAAGGGATGATTGCTTG+AGG | - | tig0003352:52197-52216 | Msa1339560:intron | 40.0% | |
| AGAAAGGGATGATTGCTTGA+GGG | - | tig0003352:52198-52217 | Msa1339560:intron | 40.0% | |
| !! | AGGCATCAAAGAGCATTATG+TGG | - | tig0003352:52330-52349 | Msa1339560:intron | 40.0% |
| ! | AAGACCACTGGTACTTGTTA+AGG | + | tig0003352:52367-52386 | None:intergenic | 40.0% |
| TGTACAATTCCATTCCAGCA+TGG | + | tig0003352:52512-52531 | None:intergenic | 40.0% | |
| ATTCATTGTTTGCACCTCCA+AGG | + | tig0003352:52715-52734 | None:intergenic | 40.0% | |
| ! | CTTCAAGTTATTGCGCATTG+AGG | - | tig0003352:52765-52784 | Msa1339560:intron | 40.0% |
| !! | TGTTGACTCTTGTGAATCTC+CGG | - | tig0003352:52793-52812 | Msa1339560:intron | 40.0% |
| TTGTGAATCTCCGGATGATT+TGG | - | tig0003352:52802-52821 | Msa1339560:intron | 40.0% | |
| ! | GGGTATGGGGTTTGAAATAA+TGG | - | tig0003352:53613-53632 | Msa1339560:intron | 40.0% |
| TGACAAACTCTCCATATTGC+AGG | + | tig0003352:53919-53938 | None:intergenic | 40.0% | |
| CATGGGAGACAACAAATTAC+GGG | + | tig0003352:54044-54063 | None:intergenic | 40.0% | |
| GTCTCCCATGATATTCTGAA+TGG | - | tig0003352:54054-54073 | Msa1339560:intron | 40.0% | |
| GGTCCCATTCAGAATATCAT+GGG | + | tig0003352:54061-54080 | None:intergenic | 40.0% | |
| TGGTCCCATTCAGAATATCA+TGG | + | tig0003352:54062-54081 | None:intergenic | 40.0% | |
| TCTAACAGTGTCTGCAGATA+TGG | - | tig0003352:54106-54125 | Msa1339560:intron | 40.0% | |
| AAGAAGAGATGTGATTCCAC+TGG | + | tig0003352:54237-54256 | None:intergenic | 40.0% | |
| AATCCAAAACCTTCCAACTC+AGG | - | tig0003352:54274-54293 | Msa1339560:intron | 40.0% | |
| GTTAGAAATGACATGGGATG+CGG | - | tig0003352:54813-54832 | Msa1339560:intron | 40.0% | |
| CAATTCCACAGTCAACTGTT+CGG | + | tig0003352:54878-54897 | None:intergenic | 40.0% | |
| TTGCTCAACTTTCAATGCAC+AGG | - | tig0003352:54895-54914 | Msa1339560:intron | 40.0% | |
| TGAAACCTTGTCATATGCTC+AGG | - | tig0003352:54979-54998 | Msa1339560:intron | 40.0% | |
| !!! | TTTTGGAATCAGGTATTGGC+TGG | - | tig0003352:55164-55183 | Msa1339560:intron | 40.0% |
| ! | ATATTGAATGGTAACGCAGG+TGG | + | tig0003352:55250-55269 | None:intergenic | 40.0% |
| AATTGGAAATACGAGCACCA+TGG | - | tig0003352:55344-55363 | Msa1339560:intron | 40.0% | |
| AGTTGTGTTTACTGAGGAAG+GGG | - | tig0003352:55711-55730 | Msa1339560:CDS | 40.0% | |
| GAACTTTCTTCCCTAGCATT+TGG | - | tig0003352:55821-55840 | Msa1339560:CDS | 40.0% | |
| TTTCTTCCCTAGCATTTGGT+TGG | - | tig0003352:55825-55844 | Msa1339560:CDS | 40.0% | |
| GCATAATCCAACCAAATGCT+AGG | + | tig0003352:55835-55854 | None:intergenic | 40.0% | |
| ! | GTTGATGCCATGTTTCTGAC+TGG | + | tig0003352:48881-48900 | None:intergenic | 45.0% |
| AGATTGCGGTAGCGAAGAAA+TGG | + | tig0003352:48974-48993 | None:intergenic | 45.0% | |
| !! | CAATGGAATGAAGGTACCTG+TGG | + | tig0003352:49128-49147 | None:intergenic | 45.0% |
| AAACGACAACTAATCGCAGC+TGG | - | tig0003352:49221-49240 | Msa1339560:CDS | 45.0% | |
| GAAGAATGGAACCTCAAACC+AGG | - | tig0003352:49266-49285 | Msa1339560:intron | 45.0% | |
| ACAATTTCAGGGGGGCAAAT+TGG | + | tig0003352:49387-49406 | None:intergenic | 45.0% | |
| ATTTGCCCCCCTGAAATTGT+AGG | - | tig0003352:49387-49406 | Msa1339560:intron | 45.0% | |
| TCGACTCCTACAATTTCAGG+GGG | + | tig0003352:49396-49415 | None:intergenic | 45.0% | |
| GGAGTCGATCATTTACGAGT+AGG | - | tig0003352:49408-49427 | Msa1339560:intron | 45.0% | |
| TCGACAACACCTCCAATTTC+TGG | - | tig0003352:49728-49747 | Msa1339560:intron | 45.0% | |
| CGACAACACCTCCAATTTCT+GGG | - | tig0003352:49729-49748 | Msa1339560:intron | 45.0% | |
| GACAACACCTCCAATTTCTG+GGG | - | tig0003352:49730-49749 | Msa1339560:intron | 45.0% | |
| ! | ACAACACCTCCAATTTCTGG+GGG | - | tig0003352:49731-49750 | Msa1339560:intron | 45.0% |
| AATTCACCCCCAGAAATTGG+AGG | + | tig0003352:49740-49759 | None:intergenic | 45.0% | |
| ! | TCCAATTTCTGGGGGTGAAT+TGG | - | tig0003352:49739-49758 | Msa1339560:intron | 45.0% |
| ACCAATTCACCCCCAGAAAT+TGG | + | tig0003352:49743-49762 | None:intergenic | 45.0% | |
| ! | AATTTCTGGGGGTGAATTGG+TGG | - | tig0003352:49742-49761 | Msa1339560:intron | 45.0% |
| !! | ATCTGCTGATGGACTTGGAA+TGG | - | tig0003352:50124-50143 | Msa1339560:intron | 45.0% |
| ! | TGAAGGTACGATGTGGGTAA+TGG | - | tig0003352:50169-50188 | Msa1339560:intron | 45.0% |
| TTCGGCTTCAGTTTCAGACA+TGG | + | tig0003352:50226-50245 | None:intergenic | 45.0% | |
| !! | AGACTTATGGAGGTGGGTTA+TGG | - | tig0003352:50290-50309 | Msa1339560:intron | 45.0% |
| ! | GATAGGGATTTGAGTGTTGC+AGG | - | tig0003352:50325-50344 | Msa1339560:intron | 45.0% |
| CTCTTGCCATTCATCTTGAC+CGG | - | tig0003352:50428-50447 | Msa1339560:intron | 45.0% | |
| CTATCCTTGAGGGAAATGTC+TGG | - | tig0003352:51057-51076 | Msa1339560:intron | 45.0% | |
| !!! | GTTGCCCTAGCGTTGTTTTT+TGG | - | tig0003352:51089-51108 | Msa1339560:intron | 45.0% |
| CGAGCCAAAAAACAACGCTA+GGG | + | tig0003352:51096-51115 | None:intergenic | 45.0% | |
| ACGAGCCAAAAAACAACGCT+AGG | + | tig0003352:51097-51116 | None:intergenic | 45.0% | |
| TTTAGCACAGTGAACCAGGA+AGG | - | tig0003352:51197-51216 | Msa1339560:intron | 45.0% | |
| CAGTGGATGATGAGAAGCTT+TGG | + | tig0003352:51321-51340 | None:intergenic | 45.0% | |
| TCATCATCCACTGCTTATGC+AGG | - | tig0003352:51328-51347 | Msa1339560:intron | 45.0% | |
| ATACGTACCTGCATAAGCAG+TGG | + | tig0003352:51338-51357 | None:intergenic | 45.0% | |
| TGAATCTAGGCTGTACTACG+AGG | + | tig0003352:51585-51604 | None:intergenic | 45.0% | |
| ! | AGCCTGGCATGGCAATTTTA+GGG | - | tig0003352:51731-51750 | Msa1339560:intron | 45.0% |
| TTCCCTAAAATTGCCATGCC+AGG | + | tig0003352:51736-51755 | None:intergenic | 45.0% | |
| GTTACTCTGCCTGCTATAGT+TGG | - | tig0003352:51766-51785 | Msa1339560:intron | 45.0% | |
| GTGATCAAGACCCGAAGAAT+AGG | + | tig0003352:51796-51815 | None:intergenic | 45.0% | |
| CATGCGAATATGTTGGAAGG+TGG | - | tig0003352:52156-52175 | Msa1339560:CDS | 45.0% | |
| AGTGCCTTAACAAGTACCAG+TGG | - | tig0003352:52360-52379 | Msa1339560:intron | 45.0% | |
| ! | AAGTACCAGTGGTCTTGACA+AGG | - | tig0003352:52371-52390 | Msa1339560:intron | 45.0% |
| TATTGTACAATGGGCCATGC+TGG | - | tig0003352:52495-52514 | Msa1339560:intron | 45.0% | |
| TGTTCGCTAGCCAAATCATC+CGG | + | tig0003352:52815-52834 | None:intergenic | 45.0% | |
| GGTTGCTCTGTTTGACAATG+AGG | - | tig0003352:52847-52866 | Msa1339560:intron | 45.0% | |
| TGCTCTGTTTGACAATGAGG+AGG | - | tig0003352:52850-52869 | Msa1339560:intron | 45.0% | |
| AGCATCAGTTGTGAGAACAG+CGG | + | tig0003352:52959-52978 | None:intergenic | 45.0% | |
| ATAGCAATCATCGGTAGCGT+GGG | - | tig0003352:53144-53163 | Msa1339560:intron | 45.0% | |
| AAACAGCAGTGGTTAGACGT+AGG | + | tig0003352:53287-53306 | None:intergenic | 45.0% | |
| ! | ACGTCTAACCACTGCTGTTT+AGG | - | tig0003352:53287-53306 | Msa1339560:intron | 45.0% |
| ! | TCTAACCACTGCTGTTTAGG+TGG | - | tig0003352:53290-53309 | Msa1339560:intron | 45.0% |
| ! | CTAACCACTGCTGTTTAGGT+GGG | - | tig0003352:53291-53310 | Msa1339560:intron | 45.0% |
| TACTGAACAAATGGTTGCCG+TGG | + | tig0003352:53674-53693 | None:intergenic | 45.0% | |
| ACAAGTCCTTTCTGCAACTC+TGG | + | tig0003352:54182-54201 | None:intergenic | 45.0% | |
| !! | TTGCCTGAGTTGGAAGGTTT+TGG | + | tig0003352:54280-54299 | None:intergenic | 45.0% |
| TAGAGAGGAATTGCCTGAGT+TGG | + | tig0003352:54290-54309 | None:intergenic | 45.0% | |
| CTACTCACTGTAGGAATTCG+TGG | - | tig0003352:54791-54810 | Msa1339560:intron | 45.0% | |
| !! | AGAAGCGAGTATTGGACCTA+TGG | + | tig0003352:54844-54863 | None:intergenic | 45.0% |
| ATAGGTCCAATACTCGCTTC+TGG | - | tig0003352:54843-54862 | Msa1339560:intron | 45.0% | |
| TAGGTCCAATACTCGCTTCT+GGG | - | tig0003352:54844-54863 | Msa1339560:intron | 45.0% | |
| TCAAGCCTGAGCATATGACA+AGG | + | tig0003352:54987-55006 | None:intergenic | 45.0% | |
| TTGTAACCATGTCTGGCTGT+TGG | - | tig0003352:55024-55043 | Msa1339560:intron | 45.0% | |
| TGGTGTAGGTCAGAGATGAA+TGG | + | tig0003352:55505-55524 | None:intergenic | 45.0% | |
| TTCATCTCTGACCTACACCA+AGG | - | tig0003352:55505-55524 | Msa1339560:CDS | 45.0% | |
| ! | CATAGACAAGATGCTGACTG+TGG | - | tig0003352:55649-55668 | Msa1339560:intron | 45.0% |
| GGTGCTAGTGGAACTAGAAT+AGG | - | tig0003352:55732-55751 | Msa1339560:CDS | 45.0% | |
| !! | AATTATTAATGAAAAATATA+AGG | - | tig0003352:50840-50859 | Msa1339560:intron | 5.0% |
| !! | ATTATTAATGAAAAATATAA+GGG | - | tig0003352:50841-50860 | Msa1339560:intron | 5.0% |
| AACCCACCCAGTCAGAAACA+TGG | - | tig0003352:48871-48890 | Msa1339560:three_prime_UTR | 50.0% | |
| ! | TGCCATGTTTCTGACTGGGT+GGG | + | tig0003352:48876-48895 | None:intergenic | 50.0% |
| ! | ATGCCATGTTTCTGACTGGG+TGG | + | tig0003352:48877-48896 | None:intergenic | 50.0% |
| GAATGGAACCTCAAACCAGG+TGG | - | tig0003352:49269-49288 | Msa1339560:intron | 50.0% | |
| ! | AGTAACGTCCACCTGGTTTG+AGG | + | tig0003352:49280-49299 | None:intergenic | 50.0% |
| GTGAAGAAGTAACGTCCACC+TGG | + | tig0003352:49287-49306 | None:intergenic | 50.0% | |
| ! | TGTTTGGTTGCTTTCGCCGT+TGG | - | tig0003352:49320-49339 | Msa1339560:intron | 50.0% |
| CGACTCCTACAATTTCAGGG+GGG | + | tig0003352:49395-49414 | None:intergenic | 50.0% | |
| !! | GCCTTCACTGACGCTGTTTT+CGG | + | tig0003352:50244-50263 | None:intergenic | 50.0% |
| !! | GAGGTGGGTTATGGCATACT+TGG | - | tig0003352:50299-50318 | Msa1339560:intron | 50.0% |
| ACATCATTCAGAGCCTGGCA+TGG | - | tig0003352:51720-51739 | Msa1339560:intron | 50.0% | |
| ! | GAGCCTGGCATGGCAATTTT+AGG | - | tig0003352:51730-51749 | Msa1339560:intron | 50.0% |
| TACAATGGGCCATGCTGGAA+TGG | - | tig0003352:52500-52519 | Msa1339560:intron | 50.0% | |
| GATACTCAACCTAGCTGCCT+TGG | - | tig0003352:52695-52714 | Msa1339560:intron | 50.0% | |
| TGGCTAGCGAACAAGCGATT+CGG | - | tig0003352:52822-52841 | Msa1339560:intron | 50.0% | |
| ! | TAGCGAACAAGCGATTCGGA+TGG | - | tig0003352:52826-52845 | Msa1339560:intron | 50.0% |
| GCATCAGTTGTGAGAACAGC+GGG | + | tig0003352:52958-52977 | None:intergenic | 50.0% | |
| CATAGCAATCATCGGTAGCG+TGG | - | tig0003352:53143-53162 | Msa1339560:intron | 50.0% | |
| TGAACCCACCTAAACAGCAG+TGG | + | tig0003352:53298-53317 | None:intergenic | 50.0% | |
| GTGGGTTCAGATTCTGCTCA+AGG | - | tig0003352:53309-53328 | Msa1339560:intron | 50.0% | |
| TCAGATTCTGCTCAAGGAGC+TGG | - | tig0003352:53315-53334 | Msa1339560:intron | 50.0% | |
| CTCATGGCCTGAAACATGGT+GGG | + | tig0003352:53345-53364 | None:intergenic | 50.0% | |
| TCTCATGGCCTGAAACATGG+TGG | + | tig0003352:53346-53365 | None:intergenic | 50.0% | |
| ACGTCTCATGGCCTGAAACA+TGG | + | tig0003352:53349-53368 | None:intergenic | 50.0% | |
| GCTCGCAACTATACGTCTCA+TGG | + | tig0003352:53361-53380 | None:intergenic | 50.0% | |
| GAGACGTATAGTTGCGAGCT+TGG | - | tig0003352:53362-53381 | Msa1339560:intron | 50.0% | |
| ! | GTCTCAAGCTGTTTCAGCCA+CGG | - | tig0003352:53654-53673 | Msa1339560:intron | 50.0% |
| GTCCTTTCTGCAACTCTGGT+CGG | + | tig0003352:54178-54197 | None:intergenic | 50.0% | |
| ! | GAGGAATTGCCTGAGTTGGA+AGG | + | tig0003352:54286-54305 | None:intergenic | 50.0% |
| ATGGGATGCGGATCAACCAT+AGG | - | tig0003352:54825-54844 | Msa1339560:intron | 50.0% | |
| AGGTCCAATACTCGCTTCTG+GGG | - | tig0003352:54845-54864 | Msa1339560:intron | 50.0% | |
| GCTCAGGCTTGATACCGAAA+AGG | - | tig0003352:54995-55014 | Msa1339560:intron | 50.0% | |
| CAAGAACCAACAGCCAGACA+TGG | + | tig0003352:55033-55052 | None:intergenic | 50.0% | |
| AACGCAGGTGGAGGTTTCAA+CGG | + | tig0003352:55238-55257 | None:intergenic | 50.0% | |
| ! | TTGAATGGTAACGCAGGTGG+AGG | + | tig0003352:55247-55266 | None:intergenic | 50.0% |
| ! | ACGTGGTTTGGCCAAGAGTA+AGG | + | tig0003352:55279-55298 | None:intergenic | 50.0% |
| TTACTCTTGGCCAAACCACG+TGG | - | tig0003352:55278-55297 | Msa1339560:intron | 50.0% | |
| TACTCTTGGCCAAACCACGT+GGG | - | tig0003352:55279-55298 | Msa1339560:intron | 50.0% | |
| AATTCAACCTAGTGCCCACG+TGG | + | tig0003352:55296-55315 | None:intergenic | 50.0% | |
| CCATGGAAATACATGCCGCT+CGG | - | tig0003352:55361-55380 | Msa1339560:intron | 50.0% | |
| TGCTCTCGGAGCAAATAGAG+AGG | + | tig0003352:55889-55908 | None:intergenic | 50.0% | |
| TGGACTCATTTCCACGCCAC+AGG | - | tig0003352:49109-49128 | Msa1339560:three_prime_UTR | 55.0% | |
| !! | GAATGAAGGTACCTGTGGCG+TGG | + | tig0003352:49123-49142 | None:intergenic | 55.0% |
| CAGCTGCACACGAAGCGAAA+AGG | + | tig0003352:49196-49215 | None:intergenic | 55.0% | |
| GCCGAAAACAGCGTCAGTGA+AGG | - | tig0003352:50240-50259 | Msa1339560:intron | 55.0% | |
| GGGATGATTGCTTGAGGGCA+AGG | - | tig0003352:52203-52222 | Msa1339560:intron | 55.0% | |
| ! | TTGGGCCTTGTCAAGACCAC+TGG | + | tig0003352:52379-52398 | None:intergenic | 55.0% |
| ACTCAACCTAGCTGCCTTGG+AGG | - | tig0003352:52698-52717 | Msa1339560:intron | 55.0% | |
| TTTGCACCTCCAAGGCAGCT+AGG | + | tig0003352:52707-52726 | None:intergenic | 55.0% | |
| TGGTGCACCCACCATGTTTC+AGG | - | tig0003352:53335-53354 | Msa1339560:intron | 55.0% | |
| GTGTCTGCAGATATGGCCCA+TGG | - | tig0003352:54113-54132 | Msa1339560:intron | 55.0% | |
| CTTTCTGCAACTCTGGTCGG+TGG | + | tig0003352:54175-54194 | None:intergenic | 55.0% | |
| CACCGACCAGAGTTGCAGAA+AGG | - | tig0003352:54173-54192 | Msa1339560:intron | 55.0% | |
| AACCAGCGCTATGCTACCAG+TGG | - | tig0003352:54218-54237 | Msa1339560:intron | 55.0% | |
| TTCCACTGGTAGCATAGCGC+TGG | + | tig0003352:54223-54242 | None:intergenic | 55.0% | |
| CCAACCCCAGAAGCGAGTAT+TGG | + | tig0003352:54852-54871 | None:intergenic | 55.0% | |
| !! | CCAATACTCGCTTCTGGGGT+TGG | - | tig0003352:54849-54868 | Msa1339560:intron | 55.0% |
| GGCATCCGAACAGTTGACTG+TGG | - | tig0003352:54870-54889 | Msa1339560:intron | 55.0% | |
| AACCTAGTGCCCACGTGGTT+TGG | + | tig0003352:55291-55310 | None:intergenic | 55.0% | |
| CCGAGCGGCATGTATTTCCA+TGG | + | tig0003352:55364-55383 | None:intergenic | 55.0% | |
| !! | TACTGAGGAAGGGGTGCTAG+TGG | - | tig0003352:55720-55739 | Msa1339560:CDS | 55.0% |
| GGCCAAACCACGTGGGCACT+AGG | - | tig0003352:55286-55305 | Msa1339560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003352 | gene | 48834 | 55986 | 48834 | ID=Msa1339560;Name=Msa1339560 |
| tig0003352 | mRNA | 48834 | 55986 | 48834 | ID=Msa1339560-mRNA-1;Parent=Msa1339560;Name=Msa1339560-mRNA-1;_AED=0.13;_eAED=0.13;_QI=56|1|1|1|1|1|9|307|525 |
| tig0003352 | exon | 48834 | 49249 | 48834 | ID=Msa1339560-mRNA-1:exon:2187;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 49904 | 50016 | 49904 | ID=Msa1339560-mRNA-1:exon:2186;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 50525 | 50706 | 50525 | ID=Msa1339560-mRNA-1:exon:2185;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 51379 | 51511 | 51379 | ID=Msa1339560-mRNA-1:exon:2184;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 51949 | 52188 | 51949 | ID=Msa1339560-mRNA-1:exon:2183;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 53471 | 53618 | 53471 | ID=Msa1339560-mRNA-1:exon:2182;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 54371 | 54646 | 54371 | ID=Msa1339560-mRNA-1:exon:2181;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 55472 | 55607 | 55472 | ID=Msa1339560-mRNA-1:exon:2180;Parent=Msa1339560-mRNA-1 |
| tig0003352 | exon | 55690 | 55986 | 55690 | ID=Msa1339560-mRNA-1:exon:2179;Parent=Msa1339560-mRNA-1 |
| tig0003352 | five_prime_UTR | 55931 | 55986 | 55931 | ID=Msa1339560-mRNA-1:five_prime_utr;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 55690 | 55930 | 55690 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 55472 | 55607 | 55472 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 54371 | 54646 | 54371 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 53471 | 53618 | 53471 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 51949 | 52188 | 51949 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 51379 | 51511 | 51379 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 50525 | 50706 | 50525 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 49904 | 50016 | 49904 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | CDS | 49141 | 49249 | 49141 | ID=Msa1339560-mRNA-1:cds;Parent=Msa1339560-mRNA-1 |
| tig0003352 | three_prime_UTR | 48834 | 49140 | 48834 | ID=Msa1339560-mRNA-1:three_prime_utr;Parent=Msa1339560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
