AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0630090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630090 MtrunA17_Chr4g0006981 95.960 297 12 0 1 297 17 313 0.0 592
Msa0630090 MtrunA17_Chr4g0047431 47.368 114 53 2 183 296 147 253 3.89e-26 107
Msa0630090 MtrunA17_Chr4g0047431 35.758 165 87 7 133 291 334 485 3.41e-22 96.3
Msa0630090 MtrunA17_Chr4g0047431 40.385 104 59 1 188 291 277 377 4.72e-20 90.1
Msa0630090 MtrunA17_Chr2g0332591 35.417 96 59 1 196 291 55 147 7.54e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630090 AT2G38270.1 65.328 274 87 2 24 295 25 292 2.33e-132 377
Msa0630090 AT3G54900.1 43.966 116 58 2 180 291 51 163 3.12e-26 102
Msa0630090 AT4G04950.1 41.935 124 56 2 173 296 143 250 4.20e-23 99.4
Msa0630090 AT4G04950.1 41.667 96 53 1 196 291 390 482 8.12e-21 92.4
Msa0630090 AT4G04950.1 40.000 100 57 1 192 291 279 375 1.55e-17 82.8
Msa0630090 AT3G15660.2 37.500 104 62 1 193 296 62 162 1.01e-19 84.7
Msa0630090 AT3G15660.1 37.500 104 62 1 193 296 62 162 1.01e-19 84.7

Find 115 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAAGGGTAGGGGTATTT+TGG 0.149905 4_3:+11691199 None:intergenic
TTCGTGGATTGTGGGGTTTC+AGG 0.153176 4_3:+11691133 None:intergenic
GAGATCCAATGGGATTATTT+TGG 0.170759 4_3:+11691367 None:intergenic
TTTAGTTACTTCATACAATT+TGG 0.215125 4_3:-11691453 Msa0630090:five_prime_UTR
TGTTAAAACAAGACATTATT+AGG 0.248227 4_3:+11687159 None:intergenic
CACTTCACCTTTCTCATTCA+TGG 0.250244 4_3:+11687418 None:intergenic
TTGTGGGGTTTCAGGGAAAT+TGG 0.263901 4_3:+11691141 None:intergenic
TCCACATAACGGCGCACTTC+TGG 0.276069 4_3:+11687622 None:intergenic
TTGGATGAAGATTATAACTA+TGG 0.276665 4_3:-11687536 Msa0630090:CDS
TCTTACCCAAGTGGCGTTTC+CGG 0.280532 4_3:+11687772 None:intergenic
GTAGAATGTGTGGAGCATTA+AGG 0.289981 4_3:-11687312 Msa0630090:three_prime_UTR
GCGTTTCCGGATTCATTTCC+AGG 0.302092 4_3:+11687785 None:intergenic
CAAGTTGGTAAAAGAGAATA+AGG 0.302408 4_3:-11687666 Msa0630090:CDS
AACGGTGAGCTTCAGTTTAT+CGG 0.310810 4_3:-11690973 Msa0630090:CDS
CGTAGGTTTGTGGAGGACTT+AGG 0.316121 4_3:+11691165 None:intergenic
AAAGCTCCGGCACCGATTTC+CGG 0.327461 4_3:+11690914 None:intergenic
CGAAGATCAGCCTTCTTCTT+AGG 0.340552 4_3:+11687743 None:intergenic
GGATTCTCTCAGAGGGTAAT+AGG 0.345382 4_3:-11687602 Msa0630090:CDS
AACTGAGAATCTTACCTTAA+CGG 0.376842 4_3:+11690885 None:intergenic
TGTGGGGTTTCAGGGAAATT+GGG 0.378002 4_3:+11691142 None:intergenic
CTGTGGCTTTCGTGGATTGT+GGG 0.378476 4_3:+11691125 None:intergenic
TAGAATGTGTGGAGCATTAA+GGG 0.406009 4_3:-11687311 Msa0630090:three_prime_UTR
GGAAATTGGGCGTAGGTTTG+TGG 0.408651 4_3:+11691155 None:intergenic
TCGTGGATTGTGGGGTTTCA+GGG 0.413009 4_3:+11691134 None:intergenic
TGGGTCAAAGATTCTCTGTC+AGG 0.419390 4_3:+11687860 None:intergenic
CCATCCAAGACTTCCATGCT+TGG 0.419718 4_3:+11687840 None:intergenic
TACTATATAGGTTGGGGTAG+TGG 0.427837 4_3:-11687888 Msa0630090:intron
AAATCGGTGCCGGAGCTTTG+TGG 0.432512 4_3:-11690910 Msa0630090:CDS
AGCCATGACTGTGGCTTTCG+TGG 0.443786 4_3:+11691117 None:intergenic
GGAGCTTTGTGGTTCCGTTA+AGG 0.448563 4_3:-11690899 Msa0630090:intron
TGTCTCGGCACACCGGAAAT+CGG 0.455138 4_3:-11690926 Msa0630090:CDS
TGACCCAAGCATGGAAGTCT+TGG 0.456099 4_3:-11687844 Msa0630090:CDS
GTAGGTTTGTGGAGGACTTA+GGG 0.456933 4_3:+11691166 None:intergenic
AGATAAGTTGTGTAGAAGAA+AGG 0.459677 4_3:+11691250 None:intergenic
GGTAATAGGCATTCTTGAAA+AGG 0.467989 4_3:-11687588 Msa0630090:CDS
CTCGCCGGTGACTGTGACAC+CGG 0.468072 4_3:-11691061 Msa0630090:CDS
CACAGTCACCGGCGAGGTAT+CGG 0.472998 4_3:+11691068 None:intergenic
TAAGTCGAGTGTGGTATGAT+TGG 0.475007 4_3:+11691332 None:intergenic
GATTAATTCCTAAGCCCAAT+GGG 0.475998 4_3:+11691389 None:intergenic
CATCCAAGACTTCCATGCTT+GGG 0.479131 4_3:+11687841 None:intergenic
TCAGCCTTCTTCTTAGGCTG+TGG 0.482968 4_3:+11687749 None:intergenic
GTCATAAACGGCGTAAACTC+CGG 0.488911 4_3:+11690999 None:intergenic
TAGGGTGGAAATTGAGTGAA+AGG 0.489635 4_3:+11691184 None:intergenic
AAGATTATAACTATGGATTG+AGG 0.490227 4_3:-11687529 Msa0630090:CDS
TTATGAGAGTGTAGATGTAT+TGG 0.491403 4_3:-11687555 Msa0630090:CDS
GTTCCACCTGGAAATGAATC+CGG 0.492241 4_3:-11687791 Msa0630090:CDS
TCCAGAAGTGCGCCGTTATG+TGG 0.500421 4_3:-11687623 Msa0630090:CDS
AGATTATAACTATGGATTGA+GGG 0.506926 4_3:-11687528 Msa0630090:CDS
TTGAATGGTGAACTTGTTGG+TGG 0.513486 4_3:-11687458 Msa0630090:CDS
GGGTGGAATTTGAGATCCAA+TGG 0.514156 4_3:+11691356 None:intergenic
GGATTAATTCCTAAGCCCAA+TGG 0.520107 4_3:+11691388 None:intergenic
GGCACACCGGAAATCGGTGC+CGG 0.520477 4_3:-11690920 Msa0630090:CDS
TTAATCCAAAATAATCCCAT+TGG 0.520704 4_3:-11691372 Msa0630090:five_prime_UTR
TTGACATGAGGGACTAAGCT+AGG 0.521036 4_3:-11687336 Msa0630090:three_prime_UTR
GAAGAACTTCCGTCAGGTGC+CGG 0.522260 4_3:-11691018 Msa0630090:CDS
ATGAATCCGGAAACGCCACT+TGG 0.525120 4_3:-11687778 Msa0630090:CDS
CTCAACTGACCATTCATCAA+TGG 0.529549 4_3:-11691286 Msa0630090:exon
GGAAATTGAGTGAAAGGGTA+GGG 0.534882 4_3:+11691190 None:intergenic
ACCTGACGGAAGTTCTTCTC+CGG 0.535226 4_3:+11691023 None:intergenic
TAATATTGCTGCTACTGTCT+CGG 0.542229 4_3:-11690941 Msa0630090:CDS
ACTGTGGCTTTCGTGGATTG+TGG 0.544358 4_3:+11691124 None:intergenic
TTGACCTCCATGAATGAGAA+AGG 0.544715 4_3:-11687425 Msa0630090:CDS
ACCGGAGAAGAACTTCCGTC+AGG 0.546323 4_3:-11691024 Msa0630090:CDS
GTCGAGTGTGGTATGATTGG+AGG 0.551365 4_3:+11691335 None:intergenic
TGAAGAGCTCGTGGACAAGT+TGG 0.551751 4_3:-11687681 Msa0630090:CDS
TAAGGTAGTTGCATTCATCA+AGG 0.556799 4_3:-11687648 Msa0630090:CDS
TGTAGAAGAAAGGTTGATGA+TGG 0.561847 4_3:+11691260 None:intergenic
TCGAGTGTGGTATGATTGGA+GGG 0.565076 4_3:+11691336 None:intergenic
CATTAAGGGAAGAGAAATGC+AGG 0.569417 4_3:-11687297 Msa0630090:three_prime_UTR
ACAGTCATGGCTCGTCGCCA+TGG 0.572974 4_3:-11691106 Msa0630090:CDS
CCAAGCATGGAAGTCTTGGA+TGG 0.573626 4_3:-11687840 Msa0630090:CDS
GTTAGTTGCACGTGACGACC+AGG 0.575913 4_3:+11687713 None:intergenic
GGTGGAATTTGAGATCCAAT+GGG 0.577139 4_3:+11691357 None:intergenic
AAGACCACAGCCTAAGAAGA+AGG 0.577244 4_3:-11687753 Msa0630090:CDS
GAAATTGAGTGAAAGGGTAG+GGG 0.580379 4_3:+11691191 None:intergenic
GAGAATCTTTGACCCAAGCA+TGG 0.586957 4_3:-11687853 Msa0630090:CDS
AGGGTGGAAATTGAGTGAAA+GGG 0.587725 4_3:+11691185 None:intergenic
CGTCCCTCTTGAAGAGCTCG+TGG 0.588084 4_3:-11687690 Msa0630090:CDS
CACGAGCTCTTCAAGAGGGA+CGG 0.589016 4_3:+11687691 None:intergenic
TTAACGGAACCACAAAGCTC+CGG 0.589016 4_3:+11690901 None:intergenic
GTTTCAGGGAAATTGGGCGT+AGG 0.590828 4_3:+11691148 None:intergenic
AGGAACACATAAAGATCAGT+GGG 0.590962 4_3:-11687817 Msa0630090:CDS
ATCAGTGGGAAAGTTCCACC+TGG 0.600855 4_3:-11687803 Msa0630090:CDS
AAACCTCGCCGATACCTCGC+CGG 0.600972 4_3:-11691076 Msa0630090:CDS
CGTTATGTGGATTCTCTCAG+AGG 0.601281 4_3:-11687610 Msa0630090:CDS
CCGGAAAACGATGAAGTCAC+CGG 0.605528 4_3:-11691042 Msa0630090:CDS
TGGAAATTGAGTGAAAGGGT+AGG 0.607380 4_3:+11691189 None:intergenic
ATAGGCATTCTTGAAAAGGA+AGG 0.610176 4_3:-11687584 Msa0630090:CDS
CTCTGAGAGAATCCACATAA+CGG 0.611300 4_3:+11687611 None:intergenic
TTGTCCACGAGCTCTTCAAG+AGG 0.611733 4_3:+11687686 None:intergenic
TGAATCCGGAAACGCCACTT+GGG 0.613599 4_3:-11687777 Msa0630090:CDS
AAGGTAGTTGCATTCATCAA+GGG 0.614128 4_3:-11687647 Msa0630090:CDS
TGATGGTAGCCATTGATGAA+TGG 0.617322 4_3:+11691277 None:intergenic
TGTGGCTTTCGTGGATTGTG+GGG 0.623153 4_3:+11691126 None:intergenic
GAGGAACACATAAAGATCAG+TGG 0.624888 4_3:-11687818 Msa0630090:CDS
AATGAGAAAGGTGAAGTGGC+TGG 0.626698 4_3:-11687413 Msa0630090:CDS
ATCCACGAAAGCCACAGTCA+TGG 0.634713 4_3:-11691119 Msa0630090:CDS
CTGCTACTGTCTCGGCACAC+CGG 0.638462 4_3:-11690933 Msa0630090:CDS
GCGTAAACTCCGGCACCTGA+CGG 0.641237 4_3:+11691009 None:intergenic
TTCACCTTTCTCATTCATGG+AGG 0.647990 4_3:+11687421 None:intergenic
GCTGATCTTCGATTAACACC+TGG 0.649446 4_3:-11687731 Msa0630090:CDS
AATTGGGCGTAGGTTTGTGG+AGG 0.650390 4_3:+11691158 None:intergenic
AGCATGGAAGTCTTGGATGG+AGG 0.650681 4_3:-11687837 Msa0630090:CDS
GGTTTGTGGAGGACTTAGGG+TGG 0.652389 4_3:+11691169 None:intergenic
TGTCCACGAGCTCTTCAAGA+GGG 0.653430 4_3:+11687687 None:intergenic
TAAGCTAGGAGTAGAATGTG+TGG 0.654672 4_3:-11687322 Msa0630090:three_prime_UTR
GTTATGTGGATTCTCTCAGA+GGG 0.661671 4_3:-11687609 Msa0630090:CDS
TGAGAAACATAAGTCGAGTG+TGG 0.664432 4_3:+11691323 None:intergenic
CATGAATGAGAAAGGTGAAG+TGG 0.666770 4_3:-11687417 Msa0630090:CDS
TTTCCGGATTCATTTCCAGG+TGG 0.667945 4_3:+11687788 None:intergenic
AGGCTGTGGTCTTACCCAAG+TGG 0.670747 4_3:+11687763 None:intergenic
AGTGTGGTATGATTGGAGGG+TGG 0.671875 4_3:+11691339 None:intergenic
ATGGCGACGAGCCATGACTG+TGG 0.695521 4_3:+11691108 None:intergenic
CGGTGTCACAGTCACCGGCG+AGG 0.704647 4_3:+11691062 None:intergenic
TCACCGGCGAGGTATCGGCG+AGG 0.773492 4_3:+11691073 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTTAAATCTTATA+AGG + chr4_3:11687876-11687895 None:intergenic 10.0%
!!! ATTCTTTTAAATTAAATTCA+AGG - chr4_3:11691299-11691318 Msa0630090:five_prime_UTR 10.0%
!!! TTCTTTTAAATTAAATTCAA+GGG - chr4_3:11691300-11691319 Msa0630090:five_prime_UTR 10.0%
!!! ATATTGAGTTAATTTTGAAT+TGG - chr4_3:11687947-11687966 Msa0630090:intron 15.0%
!! AATTCAATTTAATAATGTGT+CGG - chr4_3:11688487-11688506 Msa0630090:intron 15.0%
!!! TTCTTTTATAGTATTTCATA+AGG - chr4_3:11688820-11688839 Msa0630090:intron 15.0%
!!! TTAAAAATGTTATTTCAAAC+AGG - chr4_3:11688950-11688969 Msa0630090:intron 15.0%
!! TGTTTGATTGTTTATAAAAT+AGG - chr4_3:11689041-11689060 Msa0630090:intron 15.0%
!! GTTTGATTGTTTATAAAATA+GGG - chr4_3:11689042-11689061 Msa0630090:intron 15.0%
!! TTTAGTTACTTCATACAATT+TGG - chr4_3:11687103-11687122 Msa0630090:three_prime_UTR 20.0%
!! ATAAAAAACAAAAATCCCAT+TGG - chr4_3:11687152-11687171 Msa0630090:three_prime_UTR 20.0%
!! TAAAAAACAAAAATCCCATT+GGG - chr4_3:11687153-11687172 Msa0630090:three_prime_UTR 20.0%
!!! TAATTGTTTAGAACAATTTG+TGG - chr4_3:11687773-11687792 Msa0630090:CDS 20.0%
!!! TTTGTAAATTTTATTGCAGT+AGG - chr4_3:11688016-11688035 Msa0630090:intron 20.0%
!! TAAAATCACATCCTTAATTT+CGG - chr4_3:11688114-11688133 Msa0630090:intron 20.0%
!!! GTCATTTTTCGAATTATAAT+CGG + chr4_3:11688465-11688484 None:intergenic 20.0%
!! TCTGCTTATTATAAGAAAAT+GGG - chr4_3:11688610-11688629 Msa0630090:intron 20.0%
!! TTATAGTATTTCATAAGGAA+AGG - chr4_3:11688825-11688844 Msa0630090:intron 20.0%
!! AAATACCATTGAAAAGATAA+AGG + chr4_3:11689496-11689515 None:intergenic 20.0%
!!! GTGAAAAATTTGCTTTAATT+TGG - chr4_3:11689537-11689556 Msa0630090:intron 20.0%
!! TGTAATATACAAACAGTATT+TGG - chr4_3:11690514-11690533 Msa0630090:intron 20.0%
!! TGTTAAAACAAGACATTATT+AGG + chr4_3:11691400-11691419 None:intergenic 20.0%
! TTAATCCAAAATAATCCCAT+TGG - chr4_3:11687184-11687203 Msa0630090:three_prime_UTR 25.0%
! ACTTGTGTATTTCAAAATTC+AGG + chr4_3:11687997-11688016 None:intergenic 25.0%
!! GTATAATAGTCTTAAAGAGT+TGG - chr4_3:11688044-11688063 Msa0630090:intron 25.0%
! TTGGTTACTCAATTGTAAAT+TGG - chr4_3:11688063-11688082 Msa0630090:intron 25.0%
! AATTTGATCCAATTTCATTG+TGG - chr4_3:11688164-11688183 Msa0630090:intron 25.0%
! ATTTGATCCAATTTCATTGT+GGG - chr4_3:11688165-11688184 Msa0630090:intron 25.0%
! AAAGCTTCAAAACAATTCTA+GGG + chr4_3:11688290-11688309 None:intergenic 25.0%
!!! TAGAATTGTTTTGAAGCTTT+GGG - chr4_3:11688290-11688309 Msa0630090:intron 25.0%
! CCATCAACATTTATTCTAAT+AGG + chr4_3:11688390-11688409 None:intergenic 25.0%
! CCTATTAGAATAAATGTTGA+TGG - chr4_3:11688387-11688406 Msa0630090:intron 25.0%
!! TAGAATAAATGTTGATGGAA+AGG - chr4_3:11688392-11688411 Msa0630090:intron 25.0%
! ACACAATACATATTTAACAC+CGG - chr4_3:11688527-11688546 Msa0630090:intron 25.0%
!! TTTGAAGCATATATATTCCT+CGG + chr4_3:11688564-11688583 None:intergenic 25.0%
! GAATATATATGCTTCAAAGA+TGG - chr4_3:11688566-11688585 Msa0630090:intron 25.0%
!! CATTTTCTTATAATAAGCAG+AGG + chr4_3:11688611-11688630 None:intergenic 25.0%
! CTCTGCTTATTATAAGAAAA+TGG - chr4_3:11688609-11688628 Msa0630090:intron 25.0%
!! AAGTTCATTTTCTATGATGA+AGG - chr4_3:11688642-11688661 Msa0630090:intron 25.0%
! TCATAAGGAAAGGAAATAAT+TGG - chr4_3:11688835-11688854 Msa0630090:intron 25.0%
! TGTTACAATGTTATTCTTGA+TGG - chr4_3:11688912-11688931 Msa0630090:intron 25.0%
!! AAAAGACAAATGCCAAATTT+TGG - chr4_3:11689067-11689086 Msa0630090:intron 25.0%
! TATGAGTTAGAACCAAAATT+TGG + chr4_3:11689082-11689101 None:intergenic 25.0%
!! ATATGATGATAGTTTGAAGT+TGG - chr4_3:11689103-11689122 Msa0630090:intron 25.0%
! TTCATGATTAACATTGGATA+GGG - chr4_3:11689290-11689309 Msa0630090:intron 25.0%
! AAATCTCCAAAAGAAATTGT+GGG + chr4_3:11690244-11690263 None:intergenic 25.0%
! AAAATCTCCAAAAGAAATTG+TGG + chr4_3:11690245-11690264 None:intergenic 25.0%
! ATTTGAAAAGTCTCAAATCA+TGG + chr4_3:11690405-11690424 None:intergenic 25.0%
! AAATGCAGAAAAAGACATAT+GGG + chr4_3:11690469-11690488 None:intergenic 25.0%
! AAAATGCAGAAAAAGACATA+TGG + chr4_3:11690470-11690489 None:intergenic 25.0%
! TGTTTGTATATTACATCTGT+AGG + chr4_3:11690509-11690528 None:intergenic 25.0%
! ATCATCAGGAAAGTAATATT+TGG + chr4_3:11690625-11690644 None:intergenic 25.0%
! ACAATGAAAAATTCATCATC+AGG + chr4_3:11690639-11690658 None:intergenic 25.0%
! TGTGAAATTGTCTACTATAT+AGG - chr4_3:11690656-11690675 Msa0630090:intron 25.0%
! AAATTGTCTACTATATAGGT+TGG - chr4_3:11690660-11690679 Msa0630090:intron 25.0%
! AATTGTCTACTATATAGGTT+GGG - chr4_3:11690661-11690680 Msa0630090:intron 25.0%
! TTGGATGAAGATTATAACTA+TGG - chr4_3:11691020-11691039 Msa0630090:CDS 25.0%
!! AAGATTATAACTATGGATTG+AGG - chr4_3:11691027-11691046 Msa0630090:CDS 25.0%
!! AGATTATAACTATGGATTGA+GGG - chr4_3:11691028-11691047 Msa0630090:CDS 25.0%
! CAAAAAGTAATTAATTGTGC+CGG - chr4_3:11691172-11691191 Msa0630090:CDS 25.0%
!!! CTACTCGGTAATATTTTTAA+TGG - chr4_3:11691423-11691442 Msa0630090:five_prime_UTR 25.0%
AGATAAGTTGTGTAGAAGAA+AGG + chr4_3:11687309-11687328 None:intergenic 30.0%
AACTGAGAATCTTACCTTAA+CGG + chr4_3:11687674-11687693 None:intergenic 30.0%
GTAACTAAGTTCGTAGAAAT+GGG + chr4_3:11688233-11688252 None:intergenic 30.0%
AGTAACTAAGTTCGTAGAAA+TGG + chr4_3:11688234-11688253 None:intergenic 30.0%
AAGCTTCAAAACAATTCTAG+GGG + chr4_3:11688289-11688308 None:intergenic 30.0%
CAAAGCTTCAAAACAATTCT+AGG + chr4_3:11688291-11688310 None:intergenic 30.0%
!!! CTAGAATTGTTTTGAAGCTT+TGG - chr4_3:11688289-11688308 Msa0630090:intron 30.0%
!! AAGCTTTGGGATATAATTGA+GGG - chr4_3:11688303-11688322 Msa0630090:intron 30.0%
TATGAATCACAAACTCAGAT+AGG - chr4_3:11688416-11688435 Msa0630090:intron 30.0%
! ATATATATTCCTCGGATTAG+GGG + chr4_3:11688556-11688575 None:intergenic 30.0%
CATATATATTCCTCGGATTA+GGG + chr4_3:11688557-11688576 None:intergenic 30.0%
ATATATGCTTCAAAGATGGA+AGG - chr4_3:11688570-11688589 Msa0630090:intron 30.0%
GATGGAAGGAAAAGAAAAAA+TGG - chr4_3:11688584-11688603 Msa0630090:intron 30.0%
TTATGATTCCCAGTGTAATT+AGG - chr4_3:11688677-11688696 Msa0630090:intron 30.0%
TTTCTTAGCCTAATTACACT+GGG + chr4_3:11688688-11688707 None:intergenic 30.0%
!! AGGCTAAGAAAGAGTATTTA+AGG - chr4_3:11688697-11688716 Msa0630090:intron 30.0%
TAATGGAAAGGATGCTTATT+AGG - chr4_3:11688791-11688810 Msa0630090:intron 30.0%
! TTATTCTTGATGGATGAAAC+TGG - chr4_3:11688922-11688941 Msa0630090:intron 30.0%
CAGGAATAGTAATTGAAACA+TGG - chr4_3:11688969-11688988 Msa0630090:intron 30.0%
!! TTGAAGTTGGTAAGAAACAT+TGG - chr4_3:11689116-11689135 Msa0630090:intron 30.0%
!! TAAGAAACATTGGTTCAGTT+TGG - chr4_3:11689126-11689145 Msa0630090:intron 30.0%
AAGGTCTATATCATCATTAC+CGG - chr4_3:11689160-11689179 Msa0630090:intron 30.0%
TTAAGAAAGGTCATAAGAGA+TGG - chr4_3:11689200-11689219 Msa0630090:intron 30.0%
! ATGGAAGAGATTCTAACTTT+TGG - chr4_3:11689219-11689238 Msa0630090:intron 30.0%
! AAGAGATTCTAACTTTTGGA+CGG - chr4_3:11689223-11689242 Msa0630090:intron 30.0%
AGAGACTTCATGATTAACAT+TGG - chr4_3:11689284-11689303 Msa0630090:intron 30.0%
CTTCATGATTAACATTGGAT+AGG - chr4_3:11689289-11689308 Msa0630090:intron 30.0%
TCATGATTAACATTGGATAG+GGG - chr4_3:11689291-11689310 Msa0630090:intron 30.0%
! ATGGATTAAGAATGGTGAAT+TGG - chr4_3:11689347-11689366 Msa0630090:intron 30.0%
TAAGAATGGTGAATTGGAAT+TGG - chr4_3:11689353-11689372 Msa0630090:intron 30.0%
!! CTTTTCAATGGTATTTTGAG+TGG - chr4_3:11689500-11689519 Msa0630090:intron 30.0%
! CAAATTTTTCACGAACTTTC+CGG + chr4_3:11689529-11689548 None:intergenic 30.0%
ATTAAAACCTTCATGCCTAA+AGG + chr4_3:11689606-11689625 None:intergenic 30.0%
!! TTAGGCATGAAGGTTTTAAT+TGG - chr4_3:11689606-11689625 Msa0630090:intron 30.0%
!!! TAGGCATGAAGGTTTTAATT+GGG - chr4_3:11689607-11689626 Msa0630090:intron 30.0%
ACTTCTTCAACACAATAAGT+GGG - chr4_3:11690158-11690177 Msa0630090:intron 30.0%
! ATATTTGGAGATTTAGAGCA+TGG + chr4_3:11690610-11690629 None:intergenic 30.0%
ATTGTCTACTATATAGGTTG+GGG - chr4_3:11690662-11690681 Msa0630090:intron 30.0%
!! CAAGTTGGTAAAAGAGAATA+AGG - chr4_3:11690890-11690909 Msa0630090:intron 30.0%
! TTATGAGAGTGTAGATGTAT+TGG - chr4_3:11691001-11691020 Msa0630090:CDS 30.0%
! CACTGAAAAAGTATAGCAAT+TGG - chr4_3:11691054-11691073 Msa0630090:CDS 30.0%
AAAAATATCTGAGGGAATGT+AGG + chr4_3:11691080-11691099 None:intergenic 30.0%
!! TTCCCTCAGATATTTTTGAA+TGG - chr4_3:11691083-11691102 Msa0630090:CDS 30.0%
CACCATTCAAAAATATCTGA+GGG + chr4_3:11691088-11691107 None:intergenic 30.0%
TCACCATTCAAAAATATCTG+AGG + chr4_3:11691089-11691108 None:intergenic 30.0%
! TTTTTGAATGGTGAACTTGT+TGG - chr4_3:11691095-11691114 Msa0630090:CDS 30.0%
AAAAGAATGTCCAAAAATGC+AGG + chr4_3:11691202-11691221 None:intergenic 30.0%
!!! CTTGTTTTAACACTTCTACT+CGG - chr4_3:11691408-11691427 Msa0630090:five_prime_UTR 30.0%
GATTAATTCCTAAGCCCAAT+GGG + chr4_3:11687170-11687189 None:intergenic 35.0%
! GAGATCCAATGGGATTATTT+TGG + chr4_3:11687192-11687211 None:intergenic 35.0%
!! TGTAGAAGAAAGGTTGATGA+TGG + chr4_3:11687299-11687318 None:intergenic 35.0%
GAGAAAAAGAGGGAAAATGA+TGG + chr4_3:11687336-11687355 None:intergenic 35.0%
!! GTATTTTGGGGAGAAAAAGA+GGG + chr4_3:11687346-11687365 None:intergenic 35.0%
TACGCCGTTTATGACAAAAA+CGG - chr4_3:11687565-11687584 Msa0630090:CDS 35.0%
!! CTCACCGTTTTTGTCATAAA+CGG + chr4_3:11687572-11687591 None:intergenic 35.0%
TAATATTGCTGCTACTGTCT+CGG - chr4_3:11687615-11687634 Msa0630090:CDS 35.0%
ACATCCTTAATTTCGGAGTT+TGG - chr4_3:11688121-11688140 Msa0630090:intron 35.0%
ATGACCAAACTCCGAAATTA+AGG + chr4_3:11688128-11688147 None:intergenic 35.0%
!! GAAGCTTTGGGATATAATTG+AGG - chr4_3:11688302-11688321 Msa0630090:intron 35.0%
!! AGCTTTGGGATATAATTGAG+GGG - chr4_3:11688304-11688323 Msa0630090:intron 35.0%
ACTCTCTCAAGGTTAAAGAA+AGG - chr4_3:11688331-11688350 Msa0630090:intron 35.0%
CTCTCTCAAGGTTAAAGAAA+GGG - chr4_3:11688332-11688351 Msa0630090:intron 35.0%
GCATATATATTCCTCGGATT+AGG + chr4_3:11688558-11688577 None:intergenic 35.0%
CTTTCTTAGCCTAATTACAC+TGG + chr4_3:11688689-11688708 None:intergenic 35.0%
TCTTCCTTTACTTCTCTACA+AGG - chr4_3:11688767-11688786 Msa0630090:intron 35.0%
CTTCCTTTACTTCTCTACAA+GGG - chr4_3:11688768-11688787 Msa0630090:intron 35.0%
TTACCCTTGTAGAGAAGTAA+AGG + chr4_3:11688774-11688793 None:intergenic 35.0%
TTACTTCTCTACAAGGGTAA+TGG - chr4_3:11688774-11688793 Msa0630090:intron 35.0%
AAGGAAAGGAAATAATTGGC+AGG - chr4_3:11688839-11688858 Msa0630090:intron 35.0%
! AATAATTGGCAGGTGGTTTT+AGG - chr4_3:11688849-11688868 Msa0630090:intron 35.0%
! GAAACATGGTTTCAAGTACT+AGG - chr4_3:11688983-11689002 Msa0630090:intron 35.0%
TTCAAGTACTAGGAAACAGA+AGG - chr4_3:11688993-11689012 Msa0630090:intron 35.0%
ACAGAAGGAAAATTGTGTGT+TGG - chr4_3:11689008-11689027 Msa0630090:intron 35.0%
AGGTCTATATCATCATTACC+GGG - chr4_3:11689161-11689180 Msa0630090:intron 35.0%
GTTCGAGGGAAATTTAAGAA+AGG - chr4_3:11689187-11689206 Msa0630090:intron 35.0%
CATGATTAACATTGGATAGG+GGG - chr4_3:11689292-11689311 Msa0630090:intron 35.0%
ATGATTAACATTGGATAGGG+GGG - chr4_3:11689293-11689312 Msa0630090:intron 35.0%
!! AGAGGAGAATGGATTAAGAA+TGG - chr4_3:11689339-11689358 Msa0630090:intron 35.0%
ATTTCATTGGGAAGAAGAGT+TGG - chr4_3:11689390-11689409 Msa0630090:intron 35.0%
!! AGTTGGTGGAGTTATTTCAA+GGG - chr4_3:11689407-11689426 Msa0630090:intron 35.0%
! GAGCACCTTTATCTTTTCAA+TGG - chr4_3:11689488-11689507 Msa0630090:intron 35.0%
!! TTCAATGGTATTTTGAGTGG+AGG - chr4_3:11689503-11689522 Msa0630090:intron 35.0%
TTTCCAATGTCACGACTATT+TGG - chr4_3:11689561-11689580 Msa0630090:intron 35.0%
ATTCCAAATAGTCGTGACAT+TGG + chr4_3:11689567-11689586 None:intergenic 35.0%
! TCACGACTATTTGGAATACT+AGG - chr4_3:11689570-11689589 Msa0630090:intron 35.0%
!!! TGAAGGTTTTAATTGGGAGA+AGG - chr4_3:11689613-11689632 Msa0630090:intron 35.0%
ATTCTCAAGAGCAAGCTTAA+AGG - chr4_3:11689656-11689675 Msa0630090:intron 35.0%
TTAAACTCTGTGGCTTGATT+TGG - chr4_3:11689707-11689726 Msa0630090:intron 35.0%
!! TTAATTCTTGCAGCCTTGTT+TGG - chr4_3:11689858-11689877 Msa0630090:intron 35.0%
GACTGAAAAACAACCAAACA+AGG + chr4_3:11689874-11689893 None:intergenic 35.0%
!! TGCTGTGATTGATTTTTCTG+TGG - chr4_3:11690097-11690116 Msa0630090:intron 35.0%
!! TGATTGATTTTTCTGTGGAG+TGG - chr4_3:11690102-11690121 Msa0630090:intron 35.0%
TGTGTTGAAGAAGTCTCATA+TGG + chr4_3:11690152-11690171 None:intergenic 35.0%
GACTTCTTCAACACAATAAG+TGG - chr4_3:11690157-11690176 Msa0630090:intron 35.0%
TTTCAACACTCTATTTCGCT+GGG + chr4_3:11690205-11690224 None:intergenic 35.0%
! CTGTAACCCACAATTTCTTT+TGG - chr4_3:11690235-11690254 Msa0630090:intron 35.0%
TATCCAAGAGTTACCATGTT+TGG - chr4_3:11690317-11690336 Msa0630090:intron 35.0%
TTTAGCCCAAACCATTGTTT+GGG + chr4_3:11690355-11690374 None:intergenic 35.0%
AGGAACACATAAAGATCAGT+GGG - chr4_3:11690739-11690758 Msa0630090:intron 35.0%
TAAGGTAGTTGCATTCATCA+AGG - chr4_3:11690908-11690927 Msa0630090:CDS 35.0%
AAGGTAGTTGCATTCATCAA+GGG - chr4_3:11690909-11690928 Msa0630090:CDS 35.0%
GGTAATAGGCATTCTTGAAA+AGG - chr4_3:11690968-11690987 Msa0630090:CDS 35.0%
ATAGGCATTCTTGAAAAGGA+AGG - chr4_3:11690972-11690991 Msa0630090:CDS 35.0%
! TTGGACATTCTTTTGACATG+AGG - chr4_3:11691208-11691227 Msa0630090:CDS 35.0%
! TGGACATTCTTTTGACATGA+GGG - chr4_3:11691209-11691228 Msa0630090:CDS 35.0%
! TAGAATGTGTGGAGCATTAA+GGG - chr4_3:11691245-11691264 Msa0630090:CDS 35.0%
ACAAAAATCCCATTGGGCTT+AGG - chr4_3:11687159-11687178 Msa0630090:three_prime_UTR 40.0%
GGATTAATTCCTAAGCCCAA+TGG + chr4_3:11687171-11687190 None:intergenic 40.0%
! GGTGGAATTTGAGATCCAAT+GGG + chr4_3:11687202-11687221 None:intergenic 40.0%
TAAGTCGAGTGTGGTATGAT+TGG + chr4_3:11687227-11687246 None:intergenic 40.0%
TGAGAAACATAAGTCGAGTG+TGG + chr4_3:11687236-11687255 None:intergenic 40.0%
CTCAACTGACCATTCATCAA+TGG - chr4_3:11687270-11687289 Msa0630090:three_prime_UTR 40.0%
TGATGGTAGCCATTGATGAA+TGG + chr4_3:11687282-11687301 None:intergenic 40.0%
!! GGTATTTTGGGGAGAAAAAG+AGG + chr4_3:11687347-11687366 None:intergenic 40.0%
!!! TGAAAGGGTAGGGGTATTTT+GGG + chr4_3:11687359-11687378 None:intergenic 40.0%
GAAATTGAGTGAAAGGGTAG+GGG + chr4_3:11687368-11687387 None:intergenic 40.0%
GGAAATTGAGTGAAAGGGTA+GGG + chr4_3:11687369-11687388 None:intergenic 40.0%
TGGAAATTGAGTGAAAGGGT+AGG + chr4_3:11687370-11687389 None:intergenic 40.0%
AGGGTGGAAATTGAGTGAAA+GGG + chr4_3:11687374-11687393 None:intergenic 40.0%
TAGGGTGGAAATTGAGTGAA+AGG + chr4_3:11687375-11687394 None:intergenic 40.0%
AACGGTGAGCTTCAGTTTAT+CGG - chr4_3:11687583-11687602 Msa0630090:CDS 40.0%
TGTGGCATTAATGTAGCTTG+AGG - chr4_3:11687791-11687810 Msa0630090:CDS 40.0%
GCATTAATGTAGCTTGAGGA+TGG - chr4_3:11687795-11687814 Msa0630090:CDS 40.0%
ATTTCGGAGTTTGGTCATGA+TGG - chr4_3:11688130-11688149 Msa0630090:intron 40.0%
AGTTGCTCCCACAATGAAAT+TGG + chr4_3:11688175-11688194 None:intergenic 40.0%
AGAAAGGGTGATTCTTGCAT+AGG - chr4_3:11688347-11688366 Msa0630090:intron 40.0%
TCACAAACTCAGATAGGAAC+AGG - chr4_3:11688422-11688441 Msa0630090:intron 40.0%
!! TCTCTACAAGGGTAATGGAA+AGG - chr4_3:11688779-11688798 Msa0630090:intron 40.0%
GAAAGGAAATAATTGGCAGG+TGG - chr4_3:11688842-11688861 Msa0630090:intron 40.0%
!! GAAACATTGGTTCAGTTTGG+TGG - chr4_3:11689129-11689148 Msa0630090:intron 40.0%
GGTCTATATCATCATTACCG+GGG - chr4_3:11689162-11689181 Msa0630090:intron 40.0%
! TAACTTTTGGACGGATCTGT+TGG - chr4_3:11689232-11689251 Msa0630090:intron 40.0%
GAATGGTGAATTGGAATTGG+AGG - chr4_3:11689356-11689375 Msa0630090:intron 40.0%
!! GAGTTGGTGGAGTTATTTCA+AGG - chr4_3:11689406-11689425 Msa0630090:intron 40.0%
!! TTATTTCAAGGGCTAGCTGT+AGG - chr4_3:11689418-11689437 Msa0630090:intron 40.0%
!! TATTTCAAGGGCTAGCTGTA+GGG - chr4_3:11689419-11689438 Msa0630090:intron 40.0%
TTGGAATACTAGGAATGCCA+CGG - chr4_3:11689580-11689599 Msa0630090:intron 40.0%
!!! AGGTTTTAATTGGGAGAAGG+CGG - chr4_3:11689616-11689635 Msa0630090:intron 40.0%
!!! AGAAGGCGGAAATTTTAGCT+TGG - chr4_3:11689630-11689649 Msa0630090:intron 40.0%
!! TTAGCTTTTCGCTTAACCAG+TGG - chr4_3:11689681-11689700 Msa0630090:intron 40.0%
! TTGTTTGCTTGAGGGTGTAT+GGG - chr4_3:11689797-11689816 Msa0630090:intron 40.0%
! GTGCAATTCTGTTTTGCAGT+CGG - chr4_3:11689949-11689968 Msa0630090:intron 40.0%
GTCGAATGTTTCTTGTGTAG+CGG - chr4_3:11690033-11690052 Msa0630090:intron 40.0%
TCAGCACAAAACTCTCAATC+AGG + chr4_3:11690074-11690093 None:intergenic 40.0%
!! TGTGGAGTGGCTTTTTAGTA+TGG - chr4_3:11690115-11690134 Msa0630090:intron 40.0%
CTTTCAACACTCTATTTCGC+TGG + chr4_3:11690206-11690225 None:intergenic 40.0%
CTCTTGGATAGATTCAAGTG+TGG + chr4_3:11690307-11690326 None:intergenic 40.0%
GAACCAAACATGGTAACTCT+TGG + chr4_3:11690323-11690342 None:intergenic 40.0%
!! ACCATGTTTGGTTCTCTGTT+TGG - chr4_3:11690329-11690348 Msa0630090:intron 40.0%
TTTGGCCCAAACAATGGTTT+GGG - chr4_3:11690347-11690366 Msa0630090:intron 40.0%
CTTTAGCCCAAACCATTGTT+TGG + chr4_3:11690356-11690375 None:intergenic 40.0%
! TACTATATAGGTTGGGGTAG+TGG - chr4_3:11690668-11690687 Msa0630090:intron 40.0%
GAGGAACACATAAAGATCAG+TGG - chr4_3:11690738-11690757 Msa0630090:intron 40.0%
! CTCTGAGAGAATCCACATAA+CGG + chr4_3:11690948-11690967 None:intergenic 40.0%
GTTATGTGGATTCTCTCAGA+GGG - chr4_3:11690947-11690966 Msa0630090:CDS 40.0%
!! TTGAATGGTGAACTTGTTGG+TGG - chr4_3:11691098-11691117 Msa0630090:CDS 40.0%
TTGACCTCCATGAATGAGAA+AGG - chr4_3:11691131-11691150 Msa0630090:CDS 40.0%
TTCACCTTTCTCATTCATGG+AGG + chr4_3:11691138-11691157 None:intergenic 40.0%
CACTTCACCTTTCTCATTCA+TGG + chr4_3:11691141-11691160 None:intergenic 40.0%
CATGAATGAGAAAGGTGAAG+TGG - chr4_3:11691139-11691158 Msa0630090:CDS 40.0%
TAAGCTAGGAGTAGAATGTG+TGG - chr4_3:11691234-11691253 Msa0630090:CDS 40.0%
! GTAGAATGTGTGGAGCATTA+AGG - chr4_3:11691244-11691263 Msa0630090:CDS 40.0%
CATTAAGGGAAGAGAAATGC+AGG - chr4_3:11691259-11691278 Msa0630090:CDS 40.0%
! GGGTGGAATTTGAGATCCAA+TGG + chr4_3:11687203-11687222 None:intergenic 45.0%
TCGAGTGTGGTATGATTGGA+GGG + chr4_3:11687223-11687242 None:intergenic 45.0%
!!! GAAAGGGTAGGGGTATTTTG+GGG + chr4_3:11687358-11687377 None:intergenic 45.0%
!!! GTGAAAGGGTAGGGGTATTT+TGG + chr4_3:11687360-11687379 None:intergenic 45.0%
GTAGGTTTGTGGAGGACTTA+GGG + chr4_3:11687393-11687412 None:intergenic 45.0%
TGTGGGGTTTCAGGGAAATT+GGG + chr4_3:11687417-11687436 None:intergenic 45.0%
TTGTGGGGTTTCAGGGAAAT+TGG + chr4_3:11687418-11687437 None:intergenic 45.0%
GTCATAAACGGCGTAAACTC+CGG + chr4_3:11687560-11687579 None:intergenic 45.0%
TTAACGGAACCACAAAGCTC+CGG + chr4_3:11687658-11687677 None:intergenic 45.0%
TGAGGGGATATACTCTCTCA+AGG - chr4_3:11688320-11688339 Msa0630090:intron 45.0%
ACTCAGATAGGAACAGGACA+CGG - chr4_3:11688428-11688447 Msa0630090:intron 45.0%
!! ATAATGTGTCGGTGTCGTGT+TGG - chr4_3:11688498-11688517 Msa0630090:intron 45.0%
GAGAAAGCAACATGCTGAAG+TGG - chr4_3:11688736-11688755 Msa0630090:intron 45.0%
GCAACATGCTGAAGTGGAAT+TGG - chr4_3:11688742-11688761 Msa0630090:intron 45.0%
!! ACATTGGTTCAGTTTGGTGG+AGG - chr4_3:11689132-11689151 Msa0630090:intron 45.0%
!! CATTGGTTCAGTTTGGTGGA+GGG - chr4_3:11689133-11689152 Msa0630090:intron 45.0%
! CAGTTTGGTGGAGGGATTTA+AGG - chr4_3:11689141-11689160 Msa0630090:intron 45.0%
CTATATCATCATTACCGGGG+TGG - chr4_3:11689165-11689184 Msa0630090:intron 45.0%
CTCTACAACCATGTCTGCAA+AGG + chr4_3:11689323-11689342 None:intergenic 45.0%
CTTTGCAGACATGGTTGTAG+AGG - chr4_3:11689321-11689340 Msa0630090:intron 45.0%
GACATGGTTGTAGAGGAGAA+TGG - chr4_3:11689328-11689347 Msa0630090:intron 45.0%
TGGTGAATTGGAATTGGAGG+TGG - chr4_3:11689359-11689378 Msa0630090:intron 45.0%
TGAATTGGAATTGGAGGTGG+CGG - chr4_3:11689362-11689381 Msa0630090:intron 45.0%
! GTGGCGGAGACTATTTCATT+GGG - chr4_3:11689378-11689397 Msa0630090:intron 45.0%
TCATTGGGAAGAAGAGTTGG+TGG - chr4_3:11689393-11689412 Msa0630090:intron 45.0%
!! ATGGTATTTTGAGTGGAGGC+CGG - chr4_3:11689507-11689526 Msa0630090:intron 45.0%
!!! AGGCGGAAATTTTAGCTTGG+AGG - chr4_3:11689633-11689652 Msa0630090:intron 45.0%
CCACAGAGTTTAAAAGCCAC+TGG + chr4_3:11689700-11689719 None:intergenic 45.0%
! CCAGTGGCTTTTAAACTCTG+TGG - chr4_3:11689697-11689716 Msa0630090:intron 45.0%
AGCAATACCAGAACACGCAA+GGG + chr4_3:11689751-11689770 None:intergenic 45.0%
AAGCAATACCAGAACACGCA+AGG + chr4_3:11689752-11689771 None:intergenic 45.0%
TTGCGTGTTCTGGTATTGCT+TGG - chr4_3:11689751-11689770 Msa0630090:intron 45.0%
TGTTCTGGTATTGCTTGGTC+AGG - chr4_3:11689756-11689775 Msa0630090:intron 45.0%
! CTTGTTTGCTTGAGGGTGTA+TGG - chr4_3:11689796-11689815 Msa0630090:intron 45.0%
CTGCATCTTCATCTGTGCAT+TGG - chr4_3:11689916-11689935 Msa0630090:intron 45.0%
CATCTTCATCTGTGCATTGG+AGG - chr4_3:11689919-11689938 Msa0630090:intron 45.0%
! GTCGCAGCAGTTTCATTTTC+CGG - chr4_3:11690009-11690028 Msa0630090:intron 45.0%
! TCGCAGCAGTTTCATTTTCC+GGG - chr4_3:11690010-11690029 Msa0630090:intron 45.0%
ACACAAGAAACATTCGACCC+CGG + chr4_3:11690031-11690050 None:intergenic 45.0%
TTTCTTGTGTAGCGGTTCCA+GGG - chr4_3:11690041-11690060 Msa0630090:intron 45.0%
CTCAATCAGGTAAAGATCCC+TGG + chr4_3:11690061-11690080 None:intergenic 45.0%
GTGTGGACAAACATAGAGCA+TGG + chr4_3:11690290-11690309 None:intergenic 45.0%
GCCAAACAGAGAACCAAACA+TGG + chr4_3:11690333-11690352 None:intergenic 45.0%
TCTCTGTTTGGCCCAAACAA+TGG - chr4_3:11690341-11690360 Msa0630090:intron 45.0%
GTTTGGCCCAAACAATGGTT+TGG - chr4_3:11690346-11690365 Msa0630090:intron 45.0%
TGGGTCAAAGATTCTCTGTC+AGG + chr4_3:11690699-11690718 None:intergenic 45.0%
GAGAATCTTTGACCCAAGCA+TGG - chr4_3:11690703-11690722 Msa0630090:intron 45.0%
CATCCAAGACTTCCATGCTT+GGG + chr4_3:11690718-11690737 None:intergenic 45.0%
GTTCCACCTGGAAATGAATC+CGG - chr4_3:11690765-11690784 Msa0630090:intron 45.0%
TTTCCGGATTCATTTCCAGG+TGG + chr4_3:11690771-11690790 None:intergenic 45.0%
AAGACCACAGCCTAAGAAGA+AGG - chr4_3:11690803-11690822 Msa0630090:intron 45.0%
CGAAGATCAGCCTTCTTCTT+AGG + chr4_3:11690816-11690835 None:intergenic 45.0%
GCTGATCTTCGATTAACACC+TGG - chr4_3:11690825-11690844 Msa0630090:intron 45.0%
CGTTATGTGGATTCTCTCAG+AGG - chr4_3:11690946-11690965 Msa0630090:CDS 45.0%
GGATTCTCTCAGAGGGTAAT+AGG - chr4_3:11690954-11690973 Msa0630090:CDS 45.0%
AATGAGAAAGGTGAAGTGGC+TGG - chr4_3:11691143-11691162 Msa0630090:CDS 45.0%
GTCCAAAAATGCAGGTTCAC+CGG + chr4_3:11691194-11691213 None:intergenic 45.0%
TTGACATGAGGGACTAAGCT+AGG - chr4_3:11691220-11691239 Msa0630090:CDS 45.0%
!!! AAAAAAAACAATATTTTTAA+CGG + chr4_3:11690552-11690571 None:intergenic 5.0%
!!! TTGAATTTTTTTTTTTTTTT+TGG + chr4_3:11691337-11691356 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAATTCA+AGG - chr4_3:11691336-11691355 Msa0630090:five_prime_UTR 5.0%
!! AAAAAAAAAAAAAAATTCAA+GGG - chr4_3:11691337-11691356 Msa0630090:five_prime_UTR 5.0%
AGTGTGGTATGATTGGAGGG+TGG + chr4_3:11687220-11687239 None:intergenic 50.0%
GTCGAGTGTGGTATGATTGG+AGG + chr4_3:11687224-11687243 None:intergenic 50.0%
CGTAGGTTTGTGGAGGACTT+AGG + chr4_3:11687394-11687413 None:intergenic 50.0%
AATTGGGCGTAGGTTTGTGG+AGG + chr4_3:11687401-11687420 None:intergenic 50.0%
GGAAATTGGGCGTAGGTTTG+TGG + chr4_3:11687404-11687423 None:intergenic 50.0%
GTTTCAGGGAAATTGGGCGT+AGG + chr4_3:11687411-11687430 None:intergenic 50.0%
! TCGTGGATTGTGGGGTTTCA+GGG + chr4_3:11687425-11687444 None:intergenic 50.0%
! TTCGTGGATTGTGGGGTTTC+AGG + chr4_3:11687426-11687445 None:intergenic 50.0%
! TGTGGCTTTCGTGGATTGTG+GGG + chr4_3:11687433-11687452 None:intergenic 50.0%
! CTGTGGCTTTCGTGGATTGT+GGG + chr4_3:11687434-11687453 None:intergenic 50.0%
! ACTGTGGCTTTCGTGGATTG+TGG + chr4_3:11687435-11687454 None:intergenic 50.0%
ATCCACGAAAGCCACAGTCA+TGG - chr4_3:11687437-11687456 Msa0630090:CDS 50.0%
!!! TTTTCCGGTGTCACAGTCAC+CGG + chr4_3:11687502-11687521 None:intergenic 50.0%
! CCGGTGACTTCATCGTTTTC+CGG + chr4_3:11687517-11687536 None:intergenic 50.0%
CCGGAAAACGATGAAGTCAC+CGG - chr4_3:11687514-11687533 Msa0630090:CDS 50.0%
ACCTGACGGAAGTTCTTCTC+CGG + chr4_3:11687536-11687555 None:intergenic 50.0%
! GGAGCTTTGTGGTTCCGTTA+AGG - chr4_3:11687657-11687676 Msa0630090:CDS 50.0%
AAATTTCCCTCGAACCACCC+CGG + chr4_3:11689182-11689201 None:intergenic 50.0%
! TGGACGGATCTGTTGGTTGA+TGG - chr4_3:11689239-11689258 Msa0630090:intron 50.0%
!! GGTGGCGGAGACTATTTCAT+TGG - chr4_3:11689377-11689396 Msa0630090:intron 50.0%
GGAGAATGGTAGAAGGGAGT+GGG - chr4_3:11689446-11689465 Msa0630090:intron 50.0%
GAGAATGGTAGAAGGGAGTG+GGG - chr4_3:11689447-11689466 Msa0630090:intron 50.0%
!! TGGCTTGATTTGGAGCAAGC+AGG - chr4_3:11689717-11689736 Msa0630090:intron 50.0%
!! GGCTTGATTTGGAGCAAGCA+GGG - chr4_3:11689718-11689737 Msa0630090:intron 50.0%
AGTTAAGCCCTTGCGTGTTC+TGG - chr4_3:11689741-11689760 Msa0630090:intron 50.0%
TGTCCCTGCTTGTTTGCTTG+AGG - chr4_3:11689788-11689807 Msa0630090:intron 50.0%
GTCCCTGCTTGTTTGCTTGA+GGG - chr4_3:11689789-11689808 Msa0630090:intron 50.0%
CACCCTCAAGCAAACAAGCA+GGG + chr4_3:11689794-11689813 None:intergenic 50.0%
ACACCCTCAAGCAAACAAGC+AGG + chr4_3:11689795-11689814 None:intergenic 50.0%
GAGATAGTGCGAGGTTAGCA+GGG - chr4_3:11689828-11689847 Msa0630090:intron 50.0%
AGATAGTGCGAGGTTAGCAG+GGG - chr4_3:11689829-11689848 Msa0630090:intron 50.0%
! CGCAGCAGTTTCATTTTCCG+GGG - chr4_3:11690011-11690030 Msa0630090:intron 50.0%
GTTTCTTGTGTAGCGGTTCC+AGG - chr4_3:11690040-11690059 Msa0630090:intron 50.0%
TGACCCAAGCATGGAAGTCT+TGG - chr4_3:11690712-11690731 Msa0630090:intron 50.0%
CCATCCAAGACTTCCATGCT+TGG + chr4_3:11690719-11690738 None:intergenic 50.0%
CCAAGCATGGAAGTCTTGGA+TGG - chr4_3:11690716-11690735 Msa0630090:intron 50.0%
AGCATGGAAGTCTTGGATGG+AGG - chr4_3:11690719-11690738 Msa0630090:intron 50.0%
ATCAGTGGGAAAGTTCCACC+TGG - chr4_3:11690753-11690772 Msa0630090:intron 50.0%
GCGTTTCCGGATTCATTTCC+AGG + chr4_3:11690774-11690793 None:intergenic 50.0%
ATGAATCCGGAAACGCCACT+TGG - chr4_3:11690778-11690797 Msa0630090:intron 50.0%
TGAATCCGGAAACGCCACTT+GGG - chr4_3:11690779-11690798 Msa0630090:intron 50.0%
TCTTACCCAAGTGGCGTTTC+CGG + chr4_3:11690787-11690806 None:intergenic 50.0%
TCAGCCTTCTTCTTAGGCTG+TGG + chr4_3:11690810-11690829 None:intergenic 50.0%
TGTCCACGAGCTCTTCAAGA+GGG + chr4_3:11690872-11690891 None:intergenic 50.0%
TTGTCCACGAGCTCTTCAAG+AGG + chr4_3:11690873-11690892 None:intergenic 50.0%
TGAAGAGCTCGTGGACAAGT+TGG - chr4_3:11690875-11690894 Msa0630090:intron 50.0%
! TGCCGGTGAACCTGCATTTT+TGG - chr4_3:11691189-11691208 Msa0630090:CDS 50.0%
GGTTTGTGGAGGACTTAGGG+TGG + chr4_3:11687390-11687409 None:intergenic 55.0%
AGCCATGACTGTGGCTTTCG+TGG + chr4_3:11687442-11687461 None:intergenic 55.0%
! GGCGAGGTTTTTCACTGCCA+TGG + chr4_3:11687470-11687489 None:intergenic 55.0%
ACCGGAGAAGAACTTCCGTC+AGG - chr4_3:11687532-11687551 Msa0630090:CDS 55.0%
GAAGAACTTCCGTCAGGTGC+CGG - chr4_3:11687538-11687557 Msa0630090:CDS 55.0%
TGTCTCGGCACACCGGAAAT+CGG - chr4_3:11687630-11687649 Msa0630090:CDS 55.0%
!! AAAGCTCCGGCACCGATTTC+CGG + chr4_3:11687645-11687664 None:intergenic 55.0%
!! AAATCGGTGCCGGAGCTTTG+TGG - chr4_3:11687646-11687665 Msa0630090:CDS 55.0%
!! TGTCGGTGTCGTGTTGGTGT+GGG - chr4_3:11688504-11688523 Msa0630090:intron 55.0%
!! TTCCTCGGATTAGGGGTGTC+CGG + chr4_3:11688549-11688568 None:intergenic 55.0%
ATCATTACCGGGGTGGTTCG+AGG - chr4_3:11689172-11689191 Msa0630090:intron 55.0%
TCATTACCGGGGTGGTTCGA+GGG - chr4_3:11689173-11689192 Msa0630090:intron 55.0%
GGGGATCTCCTTTGCAGACA+TGG - chr4_3:11689312-11689331 Msa0630090:intron 55.0%
!! TTCAAGGGCTAGCTGTAGGG+AGG - chr4_3:11689422-11689441 Msa0630090:intron 55.0%
!! TCAAGGGCTAGCTGTAGGGA+GGG - chr4_3:11689423-11689442 Msa0630090:intron 55.0%
GGAGGGGGAGAATGGTAGAA+GGG - chr4_3:11689440-11689459 Msa0630090:intron 55.0%
GGGAGAATGGTAGAAGGGAG+TGG - chr4_3:11689445-11689464 Msa0630090:intron 55.0%
AATGGTAGAAGGGAGTGGGG+AGG - chr4_3:11689450-11689469 Msa0630090:intron 55.0%
CTAGGAATGCCACGGCCTTT+AGG - chr4_3:11689588-11689607 Msa0630090:intron 55.0%
ACCTTCATGCCTAAAGGCCG+TGG + chr4_3:11689600-11689619 None:intergenic 55.0%
GGTATTGCTTGGTCAGGTGC+TGG - chr4_3:11689762-11689781 Msa0630090:intron 55.0%
! CTTGAGGGTGTATGGGTCGA+AGG - chr4_3:11689804-11689823 Msa0630090:intron 55.0%
CGAGATAGTGCGAGGTTAGC+AGG - chr4_3:11689827-11689846 Msa0630090:intron 55.0%
CTGCAAGCAAAGCTGCGAAG+AGG + chr4_3:11689896-11689915 None:intergenic 55.0%
! CTGTTTTGCAGTCGGTGTGC+TGG - chr4_3:11689957-11689976 Msa0630090:intron 55.0%
! AGGCTGTGGTCTTACCCAAG+TGG + chr4_3:11690796-11690815 None:intergenic 55.0%
GTTAGTTGCACGTGACGACC+AGG + chr4_3:11690846-11690865 None:intergenic 55.0%
CACGAGCTCTTCAAGAGGGA+CGG + chr4_3:11690868-11690887 None:intergenic 55.0%
! TCCAGAAGTGCGCCGTTATG+TGG - chr4_3:11690933-11690952 Msa0630090:CDS 55.0%
TCCACATAACGGCGCACTTC+TGG + chr4_3:11690937-11690956 None:intergenic 55.0%
ATGGCGACGAGCCATGACTG+TGG + chr4_3:11687451-11687470 None:intergenic 60.0%
ACAGTCATGGCTCGTCGCCA+TGG - chr4_3:11687450-11687469 Msa0630090:CDS 60.0%
AAACCTCGCCGATACCTCGC+CGG - chr4_3:11687480-11687499 Msa0630090:CDS 60.0%
CACAGTCACCGGCGAGGTAT+CGG + chr4_3:11687491-11687510 None:intergenic 60.0%
GCGTAAACTCCGGCACCTGA+CGG + chr4_3:11687550-11687569 None:intergenic 60.0%
CTGCTACTGTCTCGGCACAC+CGG - chr4_3:11687623-11687642 Msa0630090:CDS 60.0%
!! GTGTCGGTGTCGTGTTGGTG+TGG - chr4_3:11688503-11688522 Msa0630090:intron 60.0%
!! CAAGGGCTAGCTGTAGGGAG+GGG - chr4_3:11689424-11689443 Msa0630090:intron 60.0%
!! AAGGGCTAGCTGTAGGGAGG+GGG - chr4_3:11689425-11689444 Msa0630090:intron 60.0%
AGCTGTAGGGAGGGGGAGAA+TGG - chr4_3:11689432-11689451 Msa0630090:intron 60.0%
GGGAGGGGGAGAATGGTAGA+AGG - chr4_3:11689439-11689458 Msa0630090:intron 60.0%
GTAGAAGGGAGTGGGGAGGA+GGG - chr4_3:11689454-11689473 Msa0630090:intron 60.0%
GCCACGGCCTTTAGGCATGA+AGG - chr4_3:11689596-11689615 Msa0630090:intron 60.0%
GTCGAAGGCGAGATAGTGCG+AGG - chr4_3:11689819-11689838 Msa0630090:intron 60.0%
CGTCCCTCTTGAAGAGCTCG+TGG - chr4_3:11690866-11690885 Msa0630090:intron 60.0%
CTCGCCGGTGACTGTGACAC+CGG - chr4_3:11687495-11687514 Msa0630090:CDS 65.0%
GGCACACCGGAAATCGGTGC+CGG - chr4_3:11687636-11687655 Msa0630090:CDS 65.0%
CACCGGACACCCCTAATCCG+AGG - chr4_3:11688544-11688563 Msa0630090:intron 65.0%
GGTAGAAGGGAGTGGGGAGG+AGG - chr4_3:11689453-11689472 Msa0630090:intron 65.0%
GTGCGAGGTTAGCAGGGGCT+TGG - chr4_3:11689834-11689853 Msa0630090:intron 65.0%
!! TCACCGGCGAGGTATCGGCG+AGG + chr4_3:11687486-11687505 None:intergenic 70.0%
!! CGGTGTCACAGTCACCGGCG+AGG + chr4_3:11687497-11687516 None:intergenic 70.0%
AGGGAGTGGGGAGGAGGGAG+CGG - chr4_3:11689459-11689478 Msa0630090:intron 70.0%
GGGAGTGGGGAGGAGGGAGC+GGG - chr4_3:11689460-11689479 Msa0630090:intron 75.0%
GGAGTGGGGAGGAGGGAGCG+GGG - chr4_3:11689461-11689480 Msa0630090:intron 75.0%
GAGTGGGGAGGAGGGAGCGG+GGG - chr4_3:11689462-11689481 Msa0630090:intron 75.0%
! GGGGAGGAGGGAGCGGGGGC+TGG - chr4_3:11689466-11689485 Msa0630090:intron 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 11687103 11691475 11687103 ID=Msa0630090;Name=Msa0630090
chr4_3 mRNA 11687103 11691475 11687103 ID=Msa0630090-mRNA-1;Parent=Msa0630090;Name=Msa0630090-mRNA-1;_AED=0.35;_eAED=0.35;_QI=186|1|1|1|0|1|2|294|297
chr4_3 exon 11687103 11687900 11687103 ID=Msa0630090-mRNA-1:exon:3530;Parent=Msa0630090-mRNA-1
chr4_3 exon 11690900 11691475 11690900 ID=Msa0630090-mRNA-1:exon:3529;Parent=Msa0630090-mRNA-1
chr4_3 five_prime_UTR 11691290 11691475 11691290 ID=Msa0630090-mRNA-1:five_prime_utr;Parent=Msa0630090-mRNA-1
chr4_3 CDS 11690900 11691289 11690900 ID=Msa0630090-mRNA-1:cds;Parent=Msa0630090-mRNA-1
chr4_3 CDS 11687397 11687900 11687397 ID=Msa0630090-mRNA-1:cds;Parent=Msa0630090-mRNA-1
chr4_3 three_prime_UTR 11687103 11687396 11687103 ID=Msa0630090-mRNA-1:three_prime_utr;Parent=Msa0630090-mRNA-1
Gene Sequence

>Msa0630090

ATGGCTACCATCATCAACCTTTCTTCTACACAACTTATCTCTTTCCATCATTTTCCCTCTTTTTCTCCCCAAAATACCCCTACCCTTTCACTCAATTTCCACCCTAAGTCCTCCACAAACCTACGCCCAATTTCCCTGAAACCCCACAATCCACGAAAGCCACAGTCATGGCTCGTCGCCATGGCAGTGAAAAACCTCGCCGATACCTCGCCGGTGACTGTGACACCGGAAAACGATGAAGTCACCGGAGAAGAACTTCCGTCAGGTGCCGGAGTTTACGCCGTTTATGACAAAAACGGTGAGCTTCAGTTTATCGGTTTGTCGCGTAATATTGCTGCTACTGTCTCGGCACACCGGAAATCGGTGCCGGAGCTTTGTGGTTCCGTTAAGGTTGGGGTAGTGGATGAACCTGACAGAGAATCTTTGACCCAAGCATGGAAGTCTTGGATGGAGGAACACATAAAGATCAGTGGGAAAGTTCCACCTGGAAATGAATCCGGAAACGCCACTTGGGTAAGACCACAGCCTAAGAAGAAGGCTGATCTTCGATTAACACCTGGTCGTCACGTGCAACTAACCGTCCCTCTTGAAGAGCTCGTGGACAAGTTGGTAAAAGAGAATAAGGTAGTTGCATTCATCAAGGGATCCAGAAGTGCGCCGTTATGTGGATTCTCTCAGAGGGTAATAGGCATTCTTGAAAAGGAAGGAGTAGATTATGAGAGTGTAGATGTATTGGATGAAGATTATAACTATGGATTGAGGGAGACACTGAAAAAGTATAGCAATTGGCCTACATTCCCTCAGATATTTTTGAATGGTGAACTTGTTGGTGGTTGTGATATATTGACCTCCATGAATGAGAAAGGTGAAGTGGCTGGTTTGTTCAAAAAGTAA

Protein sequence

>Msa0630090

MATIINLSSTQLISFHHFPSFSPQNTPTLSLNFHPKSSTNLRPISLKPHNPRKPQSWLVAMAVKNLADTSPVTVTPENDEVTGEELPSGAGVYAVYDKNGELQFIGLSRNIAATVSAHRKSVPELCGSVKVGVVDEPDRESLTQAWKSWMEEHIKISGKVPPGNESGNATWVRPQPKKKADLRLTPGRHVQLTVPLEELVDKLVKENKVVAFIKGSRSAPLCGFSQRVIGILEKEGVDYESVDVLDEDYNYGLRETLKKYSNWPTFPQIFLNGELVGGCDILTSMNEKGEVAGLFKK*