AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616750 MtrunA17_Chr8g0376411 98.515 404 6 0 1 404 1 404 0.0 826
Msa0616750 MtrunA17_Chr3g0116801 90.338 414 19 6 1 404 1 403 0.0 732
Msa0616750 MtrunA17_Chr7g0214101 39.776 357 204 2 52 404 3 352 4.60e-89 273
Msa0616750 MtrunA17_Chr4g0009631 37.143 315 186 5 75 379 29 341 4.45e-60 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616750 AT2G34590.1 83.824 408 60 2 1 404 1 406 0.0 711
Msa0616750 AT1G30120.1 82.238 411 61 5 1 404 1 406 0.0 692
Msa0616750 AT5G50850.1 40.979 327 189 1 81 403 33 359 7.37e-89 273
Msa0616750 AT1G55510.1 37.500 312 192 3 70 379 18 328 4.26e-62 204
Msa0616750 AT3G13450.1 37.419 310 191 3 72 379 26 334 1.73e-61 202

Find 154 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTTCCATGACTATT+TGG 0.148797 4_2:-66864904 Msa0616750:CDS
GTGAATTTATTTGGGAAAAT+TGG 0.167844 4_2:+66867923 None:intergenic
TCAAATTATTGCCCACTTCT+AGG 0.176021 4_2:+66864572 None:intergenic
ATCAAGCCCTTCGCGTTATA+AGG 0.270745 4_2:+66865284 None:intergenic
TTCCACAATTGTTAGAGATT+TGG 0.278564 4_2:+66865459 None:intergenic
CCATTTGATCTTCACACAAT+TGG 0.288971 4_2:-66865017 Msa0616750:CDS
GTTTGGCGACCTCAGAGTTT+TGG 0.290215 4_2:-66865594 Msa0616750:CDS
TCTTCTCGTAGATCCCTTAA+AGG 0.290798 4_2:-66867778 Msa0616750:intron
GGTGAAGATGTAGGTCATTA+TGG 0.293146 4_2:-66865653 Msa0616750:CDS
AAAAGAGTGTGAATTTATTT+GGG 0.301704 4_2:+66867915 None:intergenic
AAAATTGGACGGAGAAATTA+AGG 0.304278 4_2:+66867938 None:intergenic
ATTAAGGAAGATTTATAGTT+GGG 0.315014 4_2:+66867954 None:intergenic
AATGCAGTTGGGATCTAATT+AGG 0.319046 4_2:-66868148 Msa0616750:five_prime_UTR
TCCTCCAATGTTCCGGCATA+TGG 0.329825 4_2:+66864840 None:intergenic
ACTTCGAAAGCAAAAGAAAA+AGG 0.340180 4_2:+66864666 None:intergenic
GACCTGATATCAATCACTTC+AGG 0.344966 4_2:+66865047 None:intergenic
CATCTGGGATTCTTTCCTTA+AGG 0.345545 4_2:+66865201 None:intergenic
CTTGTTGGAATCAAAGGAAT+TGG 0.351212 4_2:+66867810 None:intergenic
TAACTTACTGCAACTGCATT+AGG 0.356093 4_2:+66867539 None:intergenic
GACAGTACATACTCTTCATC+TGG 0.377897 4_2:+66865185 None:intergenic
CATTTGATCTTCACACAATT+GGG 0.378344 4_2:-66865016 Msa0616750:CDS
TGCATGCGGACGGGTGGAAT+TGG 0.378533 4_2:-66864951 Msa0616750:CDS
CCAATTGTGTGAAGATCAAA+TGG 0.384655 4_2:+66865017 None:intergenic
CTTCACGCAGGGCTTCAAAA+AGG 0.384676 4_2:+66865720 None:intergenic
GTGAAGGCATTCTCAGCAAT+AGG 0.388309 4_2:+66865566 None:intergenic
AGCAGAACACTCGCAGCGTC+TGG 0.400977 4_2:-66865357 Msa0616750:CDS
ACCCTGAAGTGATTGATATC+AGG 0.402772 4_2:-66865049 Msa0616750:CDS
CTTCTTCTTCTCTGATCCAA+TGG 0.403031 4_2:-66867866 Msa0616750:exon
ATGTTGAAGTGGTCTGTTAT+AGG 0.405696 4_2:-66864545 Msa0616750:three_prime_UTR
GAACATGGGATTTCTACTTC+TGG 0.411008 4_2:-66865489 Msa0616750:CDS
GCCTTCACTGGAATGGGTAT+TGG 0.421709 4_2:-66865551 Msa0616750:CDS
TTACAATATTAACATATTCC+AGG 0.423683 4_2:-66865124 Msa0616750:CDS
ATGTTCATGCCCTCGATGAT+TGG 0.426525 4_2:+66865506 None:intergenic
TGTGGATGGAGATGTCTTGT+TGG 0.426811 4_2:+66868122 None:intergenic
TGAAGGCATTCTCAGCAATA+GGG 0.426997 4_2:+66865567 None:intergenic
TGTCCATTCCTCCAATGTTC+CGG 0.431474 4_2:+66864833 None:intergenic
AAGAAGAAGAATGGAAATGA+AGG 0.435118 4_2:+66867883 None:intergenic
TATCATATGTTTATCCTCTC+AGG 0.437493 4_2:-66864874 Msa0616750:CDS
TGAAGGATTGGAAGAAGAAA+TGG 0.437869 4_2:-66865702 Msa0616750:CDS
TTGAAGAAGCTGAGATGGTT+AGG 0.441077 4_2:-66865160 Msa0616750:CDS
CAGCTCCCAATCCTTGGAAA+AGG 0.442930 4_2:+66867839 None:intergenic
CAAATTATTGCCCACTTCTA+GGG 0.442955 4_2:+66864573 None:intergenic
AGAAACCTAGCTGAAAAGTT+TGG 0.444574 4_2:-66865611 Msa0616750:CDS
ATTCGTGGGCCCGGTGGAGT+TGG 0.449345 4_2:-66865392 Msa0616750:CDS
ACTTCTGCAGCATCGAAACC+TGG 0.450955 4_2:-66867401 Msa0616750:CDS
CAAGCGACCATCTGAATGCC+AGG 0.452339 4_2:+66865314 None:intergenic
TGAGAGGATAAACATATGAT+AGG 0.455116 4_2:+66864876 None:intergenic
AATTAAGGAAGATTTATAGT+TGG 0.455356 4_2:+66867953 None:intergenic
ATAAATTAAATACCAATGTA+AGG 0.471889 4_2:+66864629 None:intergenic
GAGAATGCCTTCACTGGAAT+GGG 0.472536 4_2:-66865557 Msa0616750:CDS
TGAAGCCCTGCGTGAAGGAT+TGG 0.474938 4_2:-66865714 Msa0616750:CDS
AGCTCCCAATCCTTGGAAAA+GGG 0.481402 4_2:+66867840 None:intergenic
CCGGGCCCACGAATGACAAC+TGG 0.484379 4_2:+66865401 None:intergenic
ATTGCTGAGAATGCCTTCAC+TGG 0.485666 4_2:-66865563 Msa0616750:CDS
CCCCTTGTTCACCAATGTCT+TGG 0.487813 4_2:+66865076 None:intergenic
AAAATACCAGTTGTCATTCG+TGG 0.488255 4_2:-66865407 Msa0616750:CDS
GGTGGAGTTGGTCGGCAACT+TGG 0.489359 4_2:-66865380 Msa0616750:CDS
GGTATTGGAGCTGCCATGAC+TGG 0.492586 4_2:-66865536 Msa0616750:CDS
CCAGTTGTCATTCGTGGGCC+CGG 0.493249 4_2:-66865401 Msa0616750:CDS
CCTTGGAAAAGGGTTGCCAT+TGG 0.493532 4_2:+66867850 None:intergenic
AAGTTGCCGACCAACTCCAC+CGG 0.494059 4_2:+66865382 None:intergenic
GGATCCTTGTGTTTGTGTCA+TGG 0.495221 4_2:-66865675 Msa0616750:CDS
GAAGTGGGCAATAATTTGAA+TGG 0.498712 4_2:-66864568 Msa0616750:three_prime_UTR
GATCCTTGTGTTTGTGTCAT+GGG 0.499148 4_2:-66865674 Msa0616750:CDS
AGAAGAAAGGAGTAGCTTGT+TGG 0.500236 4_2:+66867795 None:intergenic
TGCCAAGACATTGGTGAACA+AGG 0.503322 4_2:-66865078 Msa0616750:CDS
ACCACACGGTGCAATAAGTA+AGG 0.508227 4_2:+66868059 None:intergenic
ACCTGATATCAATCACTTCA+GGG 0.512110 4_2:+66865048 None:intergenic
GACACATCGGGTTCTCATAG+TGG 0.512571 4_2:-66864979 Msa0616750:CDS
AACCAAATCTCTAACAATTG+TGG 0.513777 4_2:-66865461 Msa0616750:CDS
CAAGAAAAGCAAAGTGGCGA+TGG 0.515007 4_2:-66868101 Msa0616750:five_prime_UTR
TTCTTCCAATCCTTCACGCA+GGG 0.516415 4_2:+66865709 None:intergenic
TGGAATTGGTGCTAGTTTGA+CGG 0.517447 4_2:-66864937 Msa0616750:CDS
GAGTAGCTTGTTGGAATCAA+AGG 0.518306 4_2:+66867804 None:intergenic
TTCAATAAAGAAGACACATC+GGG 0.518935 4_2:-66864991 Msa0616750:CDS
TGAGAATGCCTTCACTGGAA+TGG 0.522043 4_2:-66865558 Msa0616750:CDS
GTTGGAATCAAAGGAATTGG+AGG 0.522681 4_2:+66867813 None:intergenic
GGAATGCTGCATTATACGTC+TGG 0.522811 4_2:-66865440 Msa0616750:CDS
GACTCCATATGCCGGAACAT+TGG 0.523095 4_2:-66864844 Msa0616750:CDS
GTGGAGGAGTGCATGCGGAC+GGG 0.523691 4_2:-66864960 Msa0616750:CDS
AGGTAACAGCTCCCAATCCT+TGG 0.528159 4_2:+66867833 None:intergenic
AATCATCGAGGGCATGAACA+TGG 0.528244 4_2:-66865504 Msa0616750:CDS
TTTAATTTAACAAACAAACT+AGG 0.528352 4_2:+66864718 None:intergenic
AAATACCAGTTGTCATTCGT+GGG 0.533477 4_2:-66865406 Msa0616750:CDS
AAGCTGAGATGGTTAGGCCC+GGG 0.538253 4_2:-66865154 Msa0616750:CDS
TTAAGGAAGATTTATAGTTG+GGG 0.544079 4_2:+66867955 None:intergenic
GAAGCTGAGATGGTTAGGCC+CGG 0.544271 4_2:-66865155 Msa0616750:CDS
GTGCCATTAGAAAATGCAGT+TGG 0.544689 4_2:-66868160 Msa0616750:five_prime_UTR
ATTTATTTGGGAAAATTGGA+CGG 0.546285 4_2:+66867927 None:intergenic
ACTGCAGTCACAATTTGAGC+AGG 0.546350 4_2:+66864801 None:intergenic
CATTAAGACAAAGACTAAAG+AGG 0.546890 4_2:-66868196 Msa0616750:five_prime_UTR
ATGCCGGAACATTGGAGGAA+TGG 0.546987 4_2:-66864836 Msa0616750:CDS
ATTGGAAGAAGAAATGGAAA+GGG 0.547209 4_2:-66865696 Msa0616750:CDS
GAGGAGTGCATGCGGACGGG+TGG 0.547477 4_2:-66864957 Msa0616750:CDS
GGATGGAGATGTCTTGTTGG+TGG 0.548772 4_2:+66868125 None:intergenic
TGCCATTAGAAAATGCAGTT+GGG 0.551733 4_2:-66868159 Msa0616750:five_prime_UTR
TCCAATACCCATTCCAGTGA+AGG 0.555423 4_2:+66865550 None:intergenic
TTCAACACCTTATAACGCGA+AGG 0.557324 4_2:-66865291 Msa0616750:CDS
GTGGGCCCGGTGGAGTTGGT+CGG 0.557377 4_2:-66865388 Msa0616750:CDS
TAAGGGATCTACGAGAAGAA+AGG 0.559476 4_2:+66867782 None:intergenic
GTCACTTGAAGAAGCTGAGA+TGG 0.561009 4_2:-66865165 Msa0616750:CDS
TCCATATGCCGGAACATTGG+AGG 0.562757 4_2:-66864841 Msa0616750:CDS
AGTTGCCGACCAACTCCACC+GGG 0.566918 4_2:+66865383 None:intergenic
ATCAATCCCTGGCATTCAGA+TGG 0.568464 4_2:-66865321 Msa0616750:CDS
TAAATACCAATGTAAGGTTG+CGG 0.570028 4_2:+66864635 None:intergenic
GATTGGCCTCAGACCAGTCA+TGG 0.570730 4_2:+66865523 None:intergenic
GATTGGAAGAAGAAATGGAA+AGG 0.571903 4_2:-66865697 Msa0616750:CDS
CAGTCACAATTTGAGCAGGT+TGG 0.573277 4_2:+66864805 None:intergenic
AGTGGAGGAGTGCATGCGGA+CGG 0.574301 4_2:-66864961 Msa0616750:CDS
TAATATTGTAACATGCTCCC+CGG 0.574738 4_2:+66865136 None:intergenic
CTTCTTCCAATCCTTCACGC+AGG 0.574955 4_2:+66865708 None:intergenic
CATGACATGATACCTCATCC+TGG 0.575595 4_2:+66865106 None:intergenic
GTGAGCAAGACTTTGAAGAC+TGG 0.581663 4_2:-66867590 Msa0616750:CDS
TATTAACATATTCCAGGATG+AGG 0.586788 4_2:-66865118 Msa0616750:CDS
AGCTGAGATGGTTAGGCCCG+GGG 0.588499 4_2:-66865153 Msa0616750:CDS
TAGGAGCATCCAAATAGTCA+TGG 0.589072 4_2:+66864895 None:intergenic
AAAACACCGCAACCTTACAT+TGG 0.591863 4_2:-66864641 Msa0616750:three_prime_UTR
AATATTGTAACATGCTCCCC+GGG 0.594446 4_2:+66865137 None:intergenic
TTAAACTAGAATATTCATCA+TGG 0.600175 4_2:-66864700 Msa0616750:three_prime_UTR
TCAACACCTTATAACGCGAA+GGG 0.602656 4_2:-66865290 Msa0616750:CDS
GCCAAGACATTGGTGAACAA+GGG 0.602952 4_2:-66865077 Msa0616750:CDS
TCCTTACTTATTGCACCGTG+TGG 0.607218 4_2:-66868060 Msa0616750:five_prime_UTR
TGTGTCATGGGTGAAGATGT+AGG 0.609135 4_2:-66865662 Msa0616750:CDS
TTCAGGTGAGCCCTAGAAGT+GGG 0.610227 4_2:-66864583 Msa0616750:three_prime_UTR
ATCATCGAGGGCATGAACAT+GGG 0.611161 4_2:-66865503 Msa0616750:CDS
CTTCTGCAGCATCGAAACCT+GGG 0.613569 4_2:-66867400 Msa0616750:intron
GAAGGCATTCTCAGCAATAG+GGG 0.613755 4_2:+66865568 None:intergenic
TGTTGTCAGATCTGATGCAA+AGG 0.616245 4_2:-66867612 Msa0616750:CDS
AATTTGAATGGATGTTGAAG+TGG 0.618042 4_2:-66864556 Msa0616750:three_prime_UTR
AATGTTCCGGCATATGGAGT+CGG 0.618120 4_2:+66864846 None:intergenic
ATTCAATAAAGAAGACACAT+CGG 0.620292 4_2:-66864992 Msa0616750:CDS
GATGTGCCGACTCCATATGC+CGG 0.624357 4_2:-66864852 Msa0616750:CDS
GATTTGATTTCAGAGAGGAA+AGG 0.624504 4_2:-66867644 Msa0616750:intron
TCATTATGGAGGATCTTACA+AGG 0.628639 4_2:-66865639 Msa0616750:CDS
GTTGTCATTCGTGGGCCCGG+TGG 0.632799 4_2:-66865398 Msa0616750:CDS
CCAAGACATTGGTGAACAAG+GGG 0.632861 4_2:-66865076 Msa0616750:CDS
ACAGTACATACTCTTCATCT+GGG 0.634502 4_2:+66865186 None:intergenic
GGTCTGAGGCCAATCATCGA+GGG 0.636424 4_2:-66865515 Msa0616750:CDS
TTTCGATGCTGCAGAAGTCG+CGG 0.636745 4_2:+66867406 None:intergenic
GAGCTGCCATGACTGGTCTG+AGG 0.641109 4_2:-66865529 Msa0616750:CDS
CATGCAAGCTGCCAAGACAT+TGG 0.643386 4_2:-66865087 Msa0616750:CDS
ATTCAGGTGAGCCCTAGAAG+TGG 0.646477 4_2:-66864584 Msa0616750:three_prime_UTR
CATCCACAAGAAAAGCAAAG+TGG 0.649144 4_2:-66868107 Msa0616750:five_prime_UTR
ATGCTGCATTATACGTCTGG+AGG 0.653371 4_2:-66865437 Msa0616750:CDS
AAGCGACCATCTGAATGCCA+GGG 0.661617 4_2:+66865315 None:intergenic
TCATAGTGGAGGAGTGCATG+CGG 0.664859 4_2:-66864965 Msa0616750:CDS
GAAGATGTAGGTCATTATGG+AGG 0.665183 4_2:-66865650 Msa0616750:CDS
ACATCGGGTTCTCATAGTGG+AGG 0.676270 4_2:-66864976 Msa0616750:CDS
TGGAGTCGGCACATCCTGAG+AGG 0.680395 4_2:+66864860 None:intergenic
CTAAAGAGGTGCATAATGTG+AGG 0.680653 4_2:-66868182 Msa0616750:five_prime_UTR
TGGTCTGAGGCCAATCATCG+AGG 0.681253 4_2:-66865516 Msa0616750:CDS
AACATTGGAGGAATGGACAG+TGG 0.695713 4_2:-66864829 Msa0616750:CDS
TCACCCATGACACAAACACA+AGG 0.709163 4_2:+66865671 None:intergenic
TAGGGGTGTCCAAAACTCTG+AGG 0.714225 4_2:+66865585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAATAATGTATCT+AGG + chr4_2:66865729-66865748 None:intergenic 10.0%
!!! ATTAAATTTAAGATTAATAG+CGG - chr4_2:66865746-66865765 Msa0616750:intron 10.0%
!! AAAATAAAAATACATAAAGA+CGG + chr4_2:66866260-66866279 None:intergenic 10.0%
!! TCAAAAAAATAAATATTAAC+TGG - chr4_2:66866381-66866400 Msa0616750:intron 10.0%
!!! TTTTGAAAAATTTCTTGTAT+CGG + chr4_2:66865689-66865708 None:intergenic 15.0%
!! TCTAACCAAAAAAAAATATA+GGG + chr4_2:66866209-66866228 None:intergenic 15.0%
!! TTCTAACCAAAAAAAAATAT+AGG + chr4_2:66866210-66866229 None:intergenic 15.0%
!! TCAGAAAATAAAATAGAAAA+AGG + chr4_2:66866748-66866767 None:intergenic 15.0%
!!! TTTAATTTAACAAACAAACT+AGG + chr4_2:66867957-66867976 None:intergenic 15.0%
!! ATAAATTAAATACCAATGTA+AGG + chr4_2:66868046-66868065 None:intergenic 15.0%
!! ATTAAGGAAGATTTATAGTT+GGG + chr4_2:66864721-66864740 None:intergenic 20.0%
!! AATTAAGGAAGATTTATAGT+TGG + chr4_2:66864722-66864741 None:intergenic 20.0%
!!! AAAAGAGTGTGAATTTATTT+GGG + chr4_2:66864760-66864779 None:intergenic 20.0%
!!! AAAAAGAGTGTGAATTTATT+TGG + chr4_2:66864761-66864780 None:intergenic 20.0%
!!! GTTTGAAAATTGTGTTTTTT+TGG - chr4_2:66865210-66865229 Msa0616750:CDS 20.0%
!! TCTCATTTATCAATATCAAA+GGG + chr4_2:66866615-66866634 None:intergenic 20.0%
!! ATCTCATTTATCAATATCAA+AGG + chr4_2:66866616-66866635 None:intergenic 20.0%
!! TTACAATATTAACATATTCC+AGG - chr4_2:66867548-66867567 Msa0616750:CDS 20.0%
!! TTAAACTAGAATATTCATCA+TGG - chr4_2:66867972-66867991 Msa0616750:five_prime_UTR 20.0%
!!! CTTTGTCTTAATGTTGTTTT+TGG + chr4_2:66864469-66864488 None:intergenic 25.0%
!! AAAAATAGAACCTTTGAGAA+CGG - chr4_2:66864652-66864671 Msa0616750:three_prime_UTR 25.0%
! TTAAGGAAGATTTATAGTTG+GGG + chr4_2:66864720-66864739 None:intergenic 25.0%
! ATTTATTTGGGAAAATTGGA+CGG + chr4_2:66864748-66864767 None:intergenic 25.0%
! GTGAATTTATTTGGGAAAAT+TGG + chr4_2:66864752-66864771 None:intergenic 25.0%
! TCAAAAAAACGAACCTTTAA+GGG + chr4_2:66864910-66864929 None:intergenic 25.0%
!!! TTGAATGGTTTTTTGATTCT+GGG - chr4_2:66864934-66864953 Msa0616750:CDS 25.0%
! GGTTTCTCTTATAAGTTAAT+GGG - chr4_2:66864955-66864974 Msa0616750:CDS 25.0%
! GTTTCTCTTATAAGTTAATG+GGG - chr4_2:66864956-66864975 Msa0616750:CDS 25.0%
! AACAACATCAAATGTTTGTA+GGG + chr4_2:66865307-66865326 None:intergenic 25.0%
!! TTCAATTTTACAAAGCAGAT+AGG - chr4_2:66865464-66865483 Msa0616750:CDS 25.0%
!!! CTAATTTGTGCAGAAATTTT+TGG + chr4_2:66865857-66865876 None:intergenic 25.0%
!! TTTTATTCTTCTCTCTGATT+GGG + chr4_2:66866024-66866043 None:intergenic 25.0%
!!! AGGAACCCTATATTTTTTTT+TGG - chr4_2:66866201-66866220 Msa0616750:intron 25.0%
! ATTACATTTCAACTATGACT+TGG + chr4_2:66866649-66866668 None:intergenic 25.0%
!! TGTTTTGCTTTATAACCTTA+AGG - chr4_2:66867456-66867475 Msa0616750:intron 25.0%
! ATTCAATAAAGAAGACACAT+CGG - chr4_2:66867680-66867699 Msa0616750:intron 25.0%
! TGAAAATTTCCATGACTATT+TGG - chr4_2:66867768-66867787 Msa0616750:intron 25.0%
!! ACTTAATTCGGTTATCTTTT+TGG - chr4_2:66867928-66867947 Msa0616750:five_prime_UTR 25.0%
!!! GTTTGCATTTTTTTAGATTC+AGG - chr4_2:66868072-66868091 Msa0616750:five_prime_UTR 25.0%
CATTAAGACAAAGACTAAAG+AGG - chr4_2:66864476-66864495 Msa0616750:three_prime_UTR 30.0%
!!! TTGTTTTGTTTCTTACCACA+CGG + chr4_2:66864630-66864649 None:intergenic 30.0%
AAAATTGGACGGAGAAATTA+AGG + chr4_2:66864737-66864756 None:intergenic 30.0%
AAGAAGAAGAATGGAAATGA+AGG + chr4_2:66864792-66864811 None:intergenic 30.0%
GTCAAAAAAACGAACCTTTA+AGG + chr4_2:66864911-66864930 None:intergenic 30.0%
!!! GTTGAATGGTTTTTTGATTC+TGG - chr4_2:66864933-66864952 Msa0616750:CDS 30.0%
GGGTTTCTCTTATAAGTTAA+TGG - chr4_2:66864954-66864973 Msa0616750:CDS 30.0%
AATGAAAGAAACAGCATCAA+TGG + chr4_2:66865000-66865019 None:intergenic 30.0%
!! TAACTGATTTGATTTCAGAG+AGG - chr4_2:66865023-66865042 Msa0616750:CDS 30.0%
CACGCAATTACAAAAAAATG+TGG + chr4_2:66865180-66865199 None:intergenic 30.0%
!!! CACATTTTTTTGTAATTGCG+TGG - chr4_2:66865178-66865197 Msa0616750:CDS 30.0%
!!! GTGTTTTTTTGGTTGTTGTT+TGG - chr4_2:66865221-66865240 Msa0616750:CDS 30.0%
ACAACATCAAATGTTTGTAG+GGG + chr4_2:66865306-66865325 None:intergenic 30.0%
GAACAACATCAAATGTTTGT+AGG + chr4_2:66865308-66865327 None:intergenic 30.0%
CTTCAATTAAGAATGACTTC+AGG - chr4_2:66865579-66865598 Msa0616750:CDS 30.0%
TCAAAACTCCCAATATGATA+CGG - chr4_2:66865703-66865722 Msa0616750:CDS 30.0%
AGTACTAATGATGTTCTCTT+TGG + chr4_2:66865907-66865926 None:intergenic 30.0%
! CTTTTATTCTTCTCTCTGAT+TGG + chr4_2:66866025-66866044 None:intergenic 30.0%
GATGTTGAGATTGAGTTAAT+CGG - chr4_2:66866134-66866153 Msa0616750:intron 30.0%
! ACACGATTCTTCACTATTTT+TGG - chr4_2:66866465-66866484 Msa0616750:intron 30.0%
!!! CTTCACTATTTTTGGAGTAT+CGG - chr4_2:66866473-66866492 Msa0616750:intron 30.0%
!!! TTCACTATTTTTGGAGTATC+GGG - chr4_2:66866474-66866493 Msa0616750:intron 30.0%
GAAAAAGGAAAAAATGTGCA+CGG + chr4_2:66866733-66866752 None:intergenic 30.0%
ATTGGAAGAAGAAATGGAAA+GGG - chr4_2:66866976-66866995 Msa0616750:intron 30.0%
AACCAAATCTCTAACAATTG+TGG - chr4_2:66867211-66867230 Msa0616750:intron 30.0%
TTCCACAATTGTTAGAGATT+TGG + chr4_2:66867216-66867235 None:intergenic 30.0%
! TCATATTTTCAATCAATCCC+TGG - chr4_2:66867340-66867359 Msa0616750:intron 30.0%
TATTAACATATTCCAGGATG+AGG - chr4_2:66867554-66867573 Msa0616750:CDS 30.0%
CATTTGATCTTCACACAATT+GGG - chr4_2:66867656-66867675 Msa0616750:intron 30.0%
TTCAATAAAGAAGACACATC+GGG - chr4_2:66867681-66867700 Msa0616750:intron 30.0%
! GTCATGGAAATTTTCAGTAA+TGG + chr4_2:66867764-66867783 None:intergenic 30.0%
TGAGAGGATAAACATATGAT+AGG + chr4_2:66867799-66867818 None:intergenic 30.0%
TATCATATGTTTATCCTCTC+AGG - chr4_2:66867798-66867817 Msa0616750:CDS 30.0%
CTGCAAAAACACACTTAATT+CGG - chr4_2:66867916-66867935 Msa0616750:five_prime_UTR 30.0%
ACTTCGAAAGCAAAAGAAAA+AGG + chr4_2:66868009-66868028 None:intergenic 30.0%
TAAATACCAATGTAAGGTTG+CGG + chr4_2:66868040-66868059 None:intergenic 30.0%
AATTTGAATGGATGTTGAAG+TGG - chr4_2:66868116-66868135 Msa0616750:five_prime_UTR 30.0%
TGCCATTAGAAAATGCAGTT+GGG - chr4_2:66864513-66864532 Msa0616750:three_prime_UTR 35.0%
! ATCCCAACTGCATTTTCTAA+TGG + chr4_2:66864518-66864537 None:intergenic 35.0%
AATGCAGTTGGGATCTAATT+AGG - chr4_2:66864524-66864543 Msa0616750:three_prime_UTR 35.0%
TCAGAGAAGAAGAAGAAGAA+TGG + chr4_2:66864801-66864820 None:intergenic 35.0%
CTTGTTGGAATCAAAGGAAT+TGG + chr4_2:66864865-66864884 None:intergenic 35.0%
!!! CGTTTTTTTGACTCGTTGAA+TGG - chr4_2:66864919-66864938 Msa0616750:CDS 35.0%
! GATTTGATTTCAGAGAGGAA+AGG - chr4_2:66865028-66865047 Msa0616750:CDS 35.0%
TAACTTACTGCAACTGCATT+AGG + chr4_2:66865136-66865155 None:intergenic 35.0%
! TGTTGTTTGGTTATAGACAC+AGG - chr4_2:66865234-66865253 Msa0616750:CDS 35.0%
TATCTAGGCCGTATCATATT+GGG + chr4_2:66865714-66865733 None:intergenic 35.0%
AGAAACTGAGTATAACTCAC+CGG - chr4_2:66866082-66866101 Msa0616750:intron 35.0%
ATTGAGTTAATCGGTGGTAA+TGG - chr4_2:66866143-66866162 Msa0616750:intron 35.0%
!! TAAGACAGAAGTATCGTTGT+CGG - chr4_2:66866315-66866334 Msa0616750:intron 35.0%
ATCAGATATCAGATACGTGT+CGG - chr4_2:66866442-66866461 Msa0616750:intron 35.0%
!!! TCACTATTTTTGGAGTATCG+GGG - chr4_2:66866475-66866494 Msa0616750:intron 35.0%
TCACAGCTGAAAAGAAGATT+AGG - chr4_2:66866500-66866519 Msa0616750:intron 35.0%
TAGGCCAAAACAGTGAAATA+TGG - chr4_2:66866519-66866538 Msa0616750:intron 35.0%
! TAGGCCATATTTCACTGTTT+TGG + chr4_2:66866526-66866545 None:intergenic 35.0%
GGTAAAAATGTCTTCATGCT+GGG + chr4_2:66866594-66866613 None:intergenic 35.0%
! GTATGCTCTTTTGATCGTAA+AGG + chr4_2:66866841-66866860 None:intergenic 35.0%
!! CAGATGTGCATTTTATTTGC+AGG - chr4_2:66866918-66866937 Msa0616750:intron 35.0%
TGAAGGATTGGAAGAAGAAA+TGG - chr4_2:66866970-66866989 Msa0616750:intron 35.0%
GATTGGAAGAAGAAATGGAA+AGG - chr4_2:66866975-66866994 Msa0616750:intron 35.0%
TCATTATGGAGGATCTTACA+AGG - chr4_2:66867033-66867052 Msa0616750:intron 35.0%
AGAAACCTAGCTGAAAAGTT+TGG - chr4_2:66867061-66867080 Msa0616750:intron 35.0%
AAAATACCAGTTGTCATTCG+TGG - chr4_2:66867265-66867284 Msa0616750:intron 35.0%
AAATACCAGTTGTCATTCGT+GGG - chr4_2:66867266-66867285 Msa0616750:intron 35.0%
CATGCTCAAAAAGAATCACA+GGG + chr4_2:66867438-66867457 None:intergenic 35.0%
ACATGCTCAAAAAGAATCAC+AGG + chr4_2:66867439-66867458 None:intergenic 35.0%
ACAGTACATACTCTTCATCT+GGG + chr4_2:66867489-66867508 None:intergenic 35.0%
TAATATTGTAACATGCTCCC+CGG + chr4_2:66867539-66867558 None:intergenic 35.0%
ACCTGATATCAATCACTTCA+GGG + chr4_2:66867627-66867646 None:intergenic 35.0%
CCAATTGTGTGAAGATCAAA+TGG + chr4_2:66867658-66867677 None:intergenic 35.0%
CCATTTGATCTTCACACAAT+TGG - chr4_2:66867655-66867674 Msa0616750:intron 35.0%
!! TGTGTTTTTGCAGTAATCAC+TGG + chr4_2:66867909-66867928 None:intergenic 35.0%
CAAATTATTGCCCACTTCTA+GGG + chr4_2:66868102-66868121 None:intergenic 35.0%
TCAAATTATTGCCCACTTCT+AGG + chr4_2:66868103-66868122 None:intergenic 35.0%
GAAGTGGGCAATAATTTGAA+TGG - chr4_2:66868104-66868123 Msa0616750:five_prime_UTR 35.0%
ATGTTGAAGTGGTCTGTTAT+AGG - chr4_2:66868127-66868146 Msa0616750:five_prime_UTR 35.0%
! CTAAAGAGGTGCATAATGTG+AGG - chr4_2:66864490-66864509 Msa0616750:three_prime_UTR 40.0%
! GTGCCATTAGAAAATGCAGT+TGG - chr4_2:66864512-66864531 Msa0616750:three_prime_UTR 40.0%
!! CACTTTGCTTTTCTTGTGGA+TGG + chr4_2:66864567-66864586 None:intergenic 40.0%
CATCCACAAGAAAAGCAAAG+TGG - chr4_2:66864565-66864584 Msa0616750:three_prime_UTR 40.0%
!! CTCTGTTTTTCCGTTCTCAA+AGG + chr4_2:66864665-66864684 None:intergenic 40.0%
CTTCTTCTTCTCTGATCCAA+TGG - chr4_2:66864806-66864825 Msa0616750:CDS 40.0%
GTTGGAATCAAAGGAATTGG+AGG + chr4_2:66864862-66864881 None:intergenic 40.0%
!! GAGTAGCTTGTTGGAATCAA+AGG + chr4_2:66864871-66864890 None:intergenic 40.0%
! AGAAGAAAGGAGTAGCTTGT+TGG + chr4_2:66864880-66864899 None:intergenic 40.0%
TAAGGGATCTACGAGAAGAA+AGG + chr4_2:66864893-66864912 None:intergenic 40.0%
TCTTCTCGTAGATCCCTTAA+AGG - chr4_2:66864894-66864913 Msa0616750:CDS 40.0%
TGTTGTCAGATCTGATGCAA+AGG - chr4_2:66865060-66865079 Msa0616750:CDS 40.0%
AGATAGGCTATGCTTCAATG+AGG - chr4_2:66865480-66865499 Msa0616750:CDS 40.0%
GCTTCAATGAGGAGAAGAAT+TGG - chr4_2:66865491-66865510 Msa0616750:CDS 40.0%
GTATCTAGGCCGTATCATAT+TGG + chr4_2:66865715-66865734 None:intergenic 40.0%
GTTGAGATTGAGTTAATCGG+TGG - chr4_2:66866137-66866156 Msa0616750:intron 40.0%
! TACACGTATCGGAGAAGTAT+CGG + chr4_2:66866407-66866426 None:intergenic 40.0%
ACTTCTCCGATACGTGTATT+CGG - chr4_2:66866409-66866428 Msa0616750:intron 40.0%
ATACGTCCGAATACACGTAT+CGG + chr4_2:66866418-66866437 None:intergenic 40.0%
ATACGTGTATTCGGACGTAT+CGG - chr4_2:66866418-66866437 Msa0616750:intron 40.0%
GTGAAATATGGCCTAAACTG+TGG - chr4_2:66866531-66866550 Msa0616750:intron 40.0%
AAATATGGCCTAAACTGTGG+AGG - chr4_2:66866534-66866553 Msa0616750:intron 40.0%
AATATGGCCTAAACTGTGGA+GGG - chr4_2:66866535-66866554 Msa0616750:intron 40.0%
GGGTAAAAATGTCTTCATGC+TGG + chr4_2:66866595-66866614 None:intergenic 40.0%
CAAGTCGATAGTTTCCATCT+AGG - chr4_2:66866772-66866791 Msa0616750:intron 40.0%
!! GATGTCTTGTTGTTCCTAGA+TGG + chr4_2:66866789-66866808 None:intergenic 40.0%
GATCCTTGTGTTTGTGTCAT+GGG - chr4_2:66866998-66867017 Msa0616750:intron 40.0%
GGTGAAGATGTAGGTCATTA+TGG - chr4_2:66867019-66867038 Msa0616750:intron 40.0%
GAAGATGTAGGTCATTATGG+AGG - chr4_2:66867022-66867041 Msa0616750:intron 40.0%
!! TGAAGGCATTCTCAGCAATA+GGG + chr4_2:66867108-66867127 None:intergenic 40.0%
GAACATGGGATTTCTACTTC+TGG - chr4_2:66867183-66867202 Msa0616750:intron 40.0%
TTCAACACCTTATAACGCGA+AGG - chr4_2:66867381-66867400 Msa0616750:intron 40.0%
TCAACACCTTATAACGCGAA+GGG - chr4_2:66867382-66867401 Msa0616750:intron 40.0%
! CATCTGGGATTCTTTCCTTA+AGG + chr4_2:66867474-66867493 None:intergenic 40.0%
GACAGTACATACTCTTCATC+TGG + chr4_2:66867490-66867509 None:intergenic 40.0%
TTGAAGAAGCTGAGATGGTT+AGG - chr4_2:66867512-66867531 Msa0616750:intron 40.0%
AATATTGTAACATGCTCCCC+GGG + chr4_2:66867538-66867557 None:intergenic 40.0%
ACCCTGAAGTGATTGATATC+AGG - chr4_2:66867623-66867642 Msa0616750:CDS 40.0%
GACCTGATATCAATCACTTC+AGG + chr4_2:66867628-66867647 None:intergenic 40.0%
!! TGGAATTGGTGCTAGTTTGA+CGG - chr4_2:66867735-66867754 Msa0616750:intron 40.0%
!! TAGGAGCATCCAAATAGTCA+TGG + chr4_2:66867780-66867799 None:intergenic 40.0%
AAAACACCGCAACCTTACAT+TGG - chr4_2:66868031-66868050 Msa0616750:five_prime_UTR 40.0%
TGTGGATGGAGATGTCTTGT+TGG + chr4_2:66864553-66864572 None:intergenic 45.0%
!! TCGCCACTTTGCTTTTCTTG+TGG + chr4_2:66864571-66864590 None:intergenic 45.0%
CAAGAAAAGCAAAGTGGCGA+TGG - chr4_2:66864571-66864590 Msa0616750:three_prime_UTR 45.0%
TCCTTACTTATTGCACCGTG+TGG - chr4_2:66864612-66864631 Msa0616750:three_prime_UTR 45.0%
ACCACACGGTGCAATAAGTA+AGG + chr4_2:66864616-66864635 None:intergenic 45.0%
! GCAACCCTTTTCCAAGGATT+GGG - chr4_2:66864828-66864847 Msa0616750:CDS 45.0%
AGCTCCCAATCCTTGGAAAA+GGG + chr4_2:66864835-66864854 None:intergenic 45.0%
! GTGAGCAAGACTTTGAAGAC+TGG - chr4_2:66865082-66865101 Msa0616750:CDS 45.0%
TTGTAGGGGAAAACATACCC+AGG + chr4_2:66865292-66865311 None:intergenic 45.0%
ATCCGTATCGTGTCAGGTAT+CGG + chr4_2:66865660-66865679 None:intergenic 45.0%
TATCGTATCCGTATCGTGTC+AGG + chr4_2:66865666-66865685 None:intergenic 45.0%
AACTGAGTATAACTCACCGG+AGG - chr4_2:66866085-66866104 Msa0616750:intron 45.0%
!! TCGGTGGTAATGGTTAGAAG+AGG - chr4_2:66866153-66866172 Msa0616750:intron 45.0%
!! CGGTGGTAATGGTTAGAAGA+GGG - chr4_2:66866154-66866173 Msa0616750:intron 45.0%
AGGGAATAGCCATCACTTAG+TGG - chr4_2:66866173-66866192 Msa0616750:intron 45.0%
ATATGGCCTAAACTGTGGAG+GGG - chr4_2:66866536-66866555 Msa0616750:intron 45.0%
TCTTTACCCCTCCACAGTTT+AGG + chr4_2:66866545-66866564 None:intergenic 45.0%
GTCTTCATGCTGGGACTAAA+AGG + chr4_2:66866585-66866604 None:intergenic 45.0%
TTCTTCCAATCCTTCACGCA+GGG + chr4_2:66866966-66866985 None:intergenic 45.0%
GGATCCTTGTGTTTGTGTCA+TGG - chr4_2:66866997-66867016 Msa0616750:intron 45.0%
TCACCCATGACACAAACACA+AGG + chr4_2:66867004-66867023 None:intergenic 45.0%
TGTGTCATGGGTGAAGATGT+AGG - chr4_2:66867010-66867029 Msa0616750:intron 45.0%
!! GAAGGCATTCTCAGCAATAG+GGG + chr4_2:66867107-66867126 None:intergenic 45.0%
!! GTGAAGGCATTCTCAGCAAT+AGG + chr4_2:66867109-66867128 None:intergenic 45.0%
ATTGCTGAGAATGCCTTCAC+TGG - chr4_2:66867109-66867128 Msa0616750:intron 45.0%
TGAGAATGCCTTCACTGGAA+TGG - chr4_2:66867114-66867133 Msa0616750:intron 45.0%
GAGAATGCCTTCACTGGAAT+GGG - chr4_2:66867115-66867134 Msa0616750:intron 45.0%
TCCAATACCCATTCCAGTGA+AGG + chr4_2:66867125-66867144 None:intergenic 45.0%
ATGTTCATGCCCTCGATGAT+TGG + chr4_2:66867169-66867188 None:intergenic 45.0%
! AATCATCGAGGGCATGAACA+TGG - chr4_2:66867168-66867187 Msa0616750:intron 45.0%
! ATCATCGAGGGCATGAACAT+GGG - chr4_2:66867169-66867188 Msa0616750:intron 45.0%
GGAATGCTGCATTATACGTC+TGG - chr4_2:66867232-66867251 Msa0616750:intron 45.0%
ATGCTGCATTATACGTCTGG+AGG - chr4_2:66867235-66867254 Msa0616750:intron 45.0%
ATCAATCCCTGGCATTCAGA+TGG - chr4_2:66867351-66867370 Msa0616750:intron 45.0%
ATCAAGCCCTTCGCGTTATA+AGG + chr4_2:66867391-66867410 None:intergenic 45.0%
GTCACTTGAAGAAGCTGAGA+TGG - chr4_2:66867507-66867526 Msa0616750:intron 45.0%
CATGACATGATACCTCATCC+TGG + chr4_2:66867569-66867588 None:intergenic 45.0%
TGCCAAGACATTGGTGAACA+AGG - chr4_2:66867594-66867613 Msa0616750:CDS 45.0%
GCCAAGACATTGGTGAACAA+GGG - chr4_2:66867595-66867614 Msa0616750:CDS 45.0%
CCAAGACATTGGTGAACAAG+GGG - chr4_2:66867596-66867615 Msa0616750:CDS 45.0%
AATGTTCCGGCATATGGAGT+CGG + chr4_2:66867829-66867848 None:intergenic 45.0%
TGTCCATTCCTCCAATGTTC+CGG + chr4_2:66867842-66867861 None:intergenic 45.0%
AACATTGGAGGAATGGACAG+TGG - chr4_2:66867843-66867862 Msa0616750:CDS 45.0%
CAGTCACAATTTGAGCAGGT+TGG + chr4_2:66867870-66867889 None:intergenic 45.0%
ACTGCAGTCACAATTTGAGC+AGG + chr4_2:66867874-66867893 None:intergenic 45.0%
!! AAAACAAAAAAAAAAAAAAA+AGG + chr4_2:66868153-66868172 None:intergenic 5.0%
! GGATGGAGATGTCTTGTTGG+TGG + chr4_2:66864550-66864569 None:intergenic 50.0%
CCTTGGAAAAGGGTTGCCAT+TGG + chr4_2:66864825-66864844 None:intergenic 50.0%
! CCAATGGCAACCCTTTTCCA+AGG - chr4_2:66864822-66864841 Msa0616750:CDS 50.0%
! GGCAACCCTTTTCCAAGGAT+TGG - chr4_2:66864827-66864846 Msa0616750:CDS 50.0%
CAGCTCCCAATCCTTGGAAA+AGG + chr4_2:66864836-66864855 None:intergenic 50.0%
AGGTAACAGCTCCCAATCCT+TGG + chr4_2:66864842-66864861 None:intergenic 50.0%
TTTCGATGCTGCAGAAGTCG+CGG + chr4_2:66865269-66865288 None:intergenic 50.0%
! ACTTCTGCAGCATCGAAACC+TGG - chr4_2:66865271-66865290 Msa0616750:CDS 50.0%
! CTTCTGCAGCATCGAAACCT+GGG - chr4_2:66865272-66865291 Msa0616750:CDS 50.0%
CTGTACGAAGCATACGCTGA+AGG + chr4_2:66865605-66865624 None:intergenic 50.0%
! GGGGCTTCATAGCTTTTCAG+TGG + chr4_2:66865639-66865658 None:intergenic 50.0%
TCCGTATCGTGTCAGGTATC+GGG + chr4_2:66865659-66865678 None:intergenic 50.0%
!! TAACTCACCGGAGGTGTTGA+TGG - chr4_2:66866094-66866113 Msa0616750:intron 50.0%
ATTGCCTCCATCAACACCTC+CGG + chr4_2:66866104-66866123 None:intergenic 50.0%
TCCTCGTCACCACTAAGTGA+TGG + chr4_2:66866185-66866204 None:intergenic 50.0%
CTTCACGCAGGGCTTCAAAA+AGG + chr4_2:66866955-66866974 None:intergenic 50.0%
!!! CTTTTTGAAGCCCTGCGTGA+AGG - chr4_2:66866953-66866972 Msa0616750:intron 50.0%
CTTCTTCCAATCCTTCACGC+AGG + chr4_2:66866967-66866986 None:intergenic 50.0%
! GGTCGCCAAACTTTTCAGCT+AGG + chr4_2:66867069-66867088 None:intergenic 50.0%
! GTTTGGCGACCTCAGAGTTT+TGG - chr4_2:66867078-66867097 Msa0616750:intron 50.0%
!! TAGGGGTGTCCAAAACTCTG+AGG + chr4_2:66867090-66867109 None:intergenic 50.0%
GCCTTCACTGGAATGGGTAT+TGG - chr4_2:66867121-66867140 Msa0616750:intron 50.0%
AAGCGACCATCTGAATGCCA+GGG + chr4_2:66867360-66867379 None:intergenic 50.0%
CATGCAAGCTGCCAAGACAT+TGG - chr4_2:66867585-66867604 Msa0616750:CDS 50.0%
CCCCTTGTTCACCAATGTCT+TGG + chr4_2:66867599-66867618 None:intergenic 50.0%
GACACATCGGGTTCTCATAG+TGG - chr4_2:66867693-66867712 Msa0616750:intron 50.0%
ACATCGGGTTCTCATAGTGG+AGG - chr4_2:66867696-66867715 Msa0616750:intron 50.0%
! TCATAGTGGAGGAGTGCATG+CGG - chr4_2:66867707-66867726 Msa0616750:intron 50.0%
GACTCCATATGCCGGAACAT+TGG - chr4_2:66867828-66867847 Msa0616750:CDS 50.0%
TCCATATGCCGGAACATTGG+AGG - chr4_2:66867831-66867850 Msa0616750:CDS 50.0%
TCCTCCAATGTTCCGGCATA+TGG + chr4_2:66867835-66867854 None:intergenic 50.0%
ATGCCGGAACATTGGAGGAA+TGG - chr4_2:66867836-66867855 Msa0616750:CDS 50.0%
ATTCAGGTGAGCCCTAGAAG+TGG - chr4_2:66868088-66868107 Msa0616750:five_prime_UTR 50.0%
TTCAGGTGAGCCCTAGAAGT+GGG - chr4_2:66868089-66868108 Msa0616750:five_prime_UTR 50.0%
! CCGTATCGTGTCAGGTATCG+GGG + chr4_2:66865658-66865677 None:intergenic 55.0%
CCCCGATACCTGACACGATA+CGG - chr4_2:66865655-66865674 Msa0616750:CDS 55.0%
! GCCATCACTTAGTGGTGACG+AGG - chr4_2:66866181-66866200 Msa0616750:intron 55.0%
TGAAGCCCTGCGTGAAGGAT+TGG - chr4_2:66866958-66866977 Msa0616750:intron 55.0%
! GGTATTGGAGCTGCCATGAC+TGG - chr4_2:66867136-66867155 Msa0616750:intron 55.0%
!! GATTGGCCTCAGACCAGTCA+TGG + chr4_2:66867152-66867171 None:intergenic 55.0%
! TGGTCTGAGGCCAATCATCG+AGG - chr4_2:66867156-66867175 Msa0616750:intron 55.0%
! GGTCTGAGGCCAATCATCGA+GGG - chr4_2:66867157-66867176 Msa0616750:intron 55.0%
AAGTTGCCGACCAACTCCAC+CGG + chr4_2:66867293-66867312 None:intergenic 55.0%
CAAGCGACCATCTGAATGCC+AGG + chr4_2:66867361-66867380 None:intergenic 55.0%
GAAGCTGAGATGGTTAGGCC+CGG - chr4_2:66867517-66867536 Msa0616750:intron 55.0%
AAGCTGAGATGGTTAGGCCC+GGG - chr4_2:66867518-66867537 Msa0616750:intron 55.0%
!! GATGTGCCGACTCCATATGC+CGG - chr4_2:66867820-66867839 Msa0616750:CDS 55.0%
!! CTCACCGGAGGTGTTGATGG+AGG - chr4_2:66866097-66866116 Msa0616750:intron 60.0%
!! GAGCTGCCATGACTGGTCTG+AGG - chr4_2:66867143-66867162 Msa0616750:intron 60.0%
CCAGTTGTCATTCGTGGGCC+CGG - chr4_2:66867271-66867290 Msa0616750:intron 60.0%
AGTTGCCGACCAACTCCACC+GGG + chr4_2:66867292-66867311 None:intergenic 60.0%
! GGTGGAGTTGGTCGGCAACT+TGG - chr4_2:66867292-66867311 Msa0616750:intron 60.0%
AGCAGAACACTCGCAGCGTC+TGG - chr4_2:66867315-66867334 Msa0616750:intron 60.0%
AGCTGAGATGGTTAGGCCCG+GGG - chr4_2:66867519-66867538 Msa0616750:intron 60.0%
! AGTGGAGGAGTGCATGCGGA+CGG - chr4_2:66867711-66867730 Msa0616750:intron 60.0%
TGCATGCGGACGGGTGGAAT+TGG - chr4_2:66867721-66867740 Msa0616750:intron 60.0%
TGGAGTCGGCACATCCTGAG+AGG + chr4_2:66867815-66867834 None:intergenic 60.0%
CCGGGCCCACGAATGACAAC+TGG + chr4_2:66867274-66867293 None:intergenic 65.0%
GTTGTCATTCGTGGGCCCGG+TGG - chr4_2:66867274-66867293 Msa0616750:intron 65.0%
ATTCGTGGGCCCGGTGGAGT+TGG - chr4_2:66867280-66867299 Msa0616750:intron 65.0%
! GTGGAGGAGTGCATGCGGAC+GGG - chr4_2:66867712-66867731 Msa0616750:intron 65.0%
! GTGGGCCCGGTGGAGTTGGT+CGG - chr4_2:66867284-66867303 Msa0616750:intron 70.0%
! GAGGAGTGCATGCGGACGGG+TGG - chr4_2:66867715-66867734 Msa0616750:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 66864460 66868234 66864460 ID=Msa0616750;Name=Msa0616750
chr4_2 mRNA 66864460 66868234 66864460 ID=Msa0616750-mRNA-1;Parent=Msa0616750;Name=Msa0616750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=365|1|1|1|1|1|4|322|404
chr4_2 exon 66864460 66865754 66864460 ID=Msa0616750-mRNA-1:exon:19047;Parent=Msa0616750-mRNA-1
chr4_2 exon 66867401 66867444 66867401 ID=Msa0616750-mRNA-1:exon:19046;Parent=Msa0616750-mRNA-1
chr4_2 exon 66867547 66867653 66867547 ID=Msa0616750-mRNA-1:exon:19045;Parent=Msa0616750-mRNA-1
chr4_2 exon 66867779 66868234 66867779 ID=Msa0616750-mRNA-1:exon:19044;Parent=Msa0616750-mRNA-1
chr4_2 five_prime_UTR 66867870 66868234 66867870 ID=Msa0616750-mRNA-1:five_prime_utr;Parent=Msa0616750-mRNA-1
chr4_2 CDS 66867779 66867869 66867779 ID=Msa0616750-mRNA-1:cds;Parent=Msa0616750-mRNA-1
chr4_2 CDS 66867547 66867653 66867547 ID=Msa0616750-mRNA-1:cds;Parent=Msa0616750-mRNA-1
chr4_2 CDS 66867401 66867444 66867401 ID=Msa0616750-mRNA-1:cds;Parent=Msa0616750-mRNA-1
chr4_2 CDS 66864782 66865754 66864782 ID=Msa0616750-mRNA-1:cds;Parent=Msa0616750-mRNA-1
chr4_2 three_prime_UTR 66864460 66864781 66864460 ID=Msa0616750-mRNA-1:three_prime_utr;Parent=Msa0616750-mRNA-1
Gene Sequence

>Msa0616750

ATGGCAACCCTTTTCCAAGGATTGGGAGCTGTTACCTCCAATTCCTTTGATTCCAACAAGCTACTCCTTTCTTCTCGTAGATCCCTTAAAGAGAGGAAAGGAAACATTTTTGTTGTCAGATCTGATGCAAAGGTGAGCAAGACTTTGAAGACTGGTGCAGCTCGTAAGAGTGAATTGTTGATTCCTAATGCAGTTGCAACACAGGAAAGTAGTTCCGCGACTTCTGCAGCATCGAAACCTGGGCATGAACTTCTCCTTTTTGAAGCCCTGCGTGAAGGATTGGAAGAAGAAATGGAAAGGGATCCTTGTGTTTGTGTCATGGGTGAAGATGTAGGTCATTATGGAGGATCTTACAAGGTGACTAGAAACCTAGCTGAAAAGTTTGGCGACCTCAGAGTTTTGGACACCCCTATTGCTGAGAATGCCTTCACTGGAATGGGTATTGGAGCTGCCATGACTGGTCTGAGGCCAATCATCGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAAATCTCTAACAATTGTGGAATGCTGCATTATACGTCTGGAGGTCAGTTTAAAATACCAGTTGTCATTCGTGGGCCCGGTGGAGTTGGTCGGCAACTTGGAGCAGAACACTCGCAGCGTCTGGAGTCATATTTTCAATCAATCCCTGGCATTCAGATGGTCGCTTGTTCAACACCTTATAACGCGAAGGGCTTGATGAAAGCTGCAATTCGAAGCGACAACCCTGTGATTCTTTTTGAGCATGTTTTGCTTTATAACCTTAAGGAAAGAATCCCAGATGAAGAGTATGTACTGTCACTTGAAGAAGCTGAGATGGTTAGGCCCGGGGAGCATGTTACAATATTAACATATTCCAGGATGAGGTATCATGTCATGCAAGCTGCCAAGACATTGGTGAACAAGGGGTATGACCCTGAAGTGATTGATATCAGGTCTTTGAAACCATTTGATCTTCACACAATTGGGAATTCAATAAAGAAGACACATCGGGTTCTCATAGTGGAGGAGTGCATGCGGACGGGTGGAATTGGTGCTAGTTTGACGGCTGCCATTACTGAAAATTTCCATGACTATTTGGATGCTCCTATCATATGTTTATCCTCTCAGGATGTGCCGACTCCATATGCCGGAACATTGGAGGAATGGACAGTGGTCCAACCTGCTCAAATTGTGACTGCAGTTGAGCAGCTCTGCCAGTGA
Protein sequence

>Msa0616750

MATLFQGLGAVTSNSFDSNKLLLSSRRSLKERKGNIFVVRSDAKVSKTLKTGAARKSELLIPNAVATQESSSATSAASKPGHELLLFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTRNLAEKFGDLRVLDTPIAENAFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIICLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ*