AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562750 MtrunA17_Chr8g0376411 98.515 404 6 0 1 404 1 404 0.0 826
Msa0562750 MtrunA17_Chr3g0116801 90.338 414 19 6 1 404 1 403 0.0 732
Msa0562750 MtrunA17_Chr7g0214101 39.776 357 204 2 52 404 3 352 4.60e-89 273
Msa0562750 MtrunA17_Chr4g0009631 37.143 315 186 5 75 379 29 341 4.45e-60 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562750 AT2G34590.1 83.824 408 60 2 1 404 1 406 0.0 711
Msa0562750 AT1G30120.1 82.238 411 61 5 1 404 1 406 0.0 692
Msa0562750 AT5G50850.1 40.979 327 189 1 81 403 33 359 7.37e-89 273
Msa0562750 AT1G55510.1 37.500 312 192 3 70 379 18 328 4.26e-62 204
Msa0562750 AT3G13450.1 37.419 310 191 3 72 379 26 334 1.73e-61 202

Find 153 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATTTCCATGACTATT+TGG 0.148797 4_1:-62873343 Msa0562750:CDS
GTGAATTTATTTGGGAAAAT+TGG 0.167844 4_1:+62876371 None:intergenic
TCAAATTATTGCCCACTTCT+AGG 0.176021 4_1:+62873011 None:intergenic
ATCAAGCCCTTCGCGTTATA+AGG 0.270745 4_1:+62873723 None:intergenic
TTCCACAATTGTTAGAGATT+TGG 0.278564 4_1:+62873898 None:intergenic
CCATTTGATCTTCACACAAT+TGG 0.288971 4_1:-62873456 Msa0562750:CDS
GTTTGGCGACCTCAGAGTTT+TGG 0.290215 4_1:-62874033 Msa0562750:CDS
TCTTCTCGTAGATCCCTTAA+AGG 0.290798 4_1:-62876220 Msa0562750:intron
GGTGAAGATGTAGGTCATTA+TGG 0.293146 4_1:-62874092 Msa0562750:CDS
AAAAGAGTGTGAATTTATTT+GGG 0.301704 4_1:+62876363 None:intergenic
AAAATTGGACGGAGAAATTA+AGG 0.304278 4_1:+62876386 None:intergenic
ATTAAGGAAGATTTATAGTT+GGG 0.315014 4_1:+62876402 None:intergenic
AATGCAGTTGGGATCTAATT+AGG 0.319046 4_1:-62876597 Msa0562750:five_prime_UTR
TCCTCCAATGTTCCGGCATA+TGG 0.329825 4_1:+62873279 None:intergenic
ACTTCGAAAGCAAAAGAAAA+AGG 0.340180 4_1:+62873105 None:intergenic
GACCTGATATCAATCACTTC+AGG 0.344966 4_1:+62873486 None:intergenic
CATCTGGGATTCTTTCCTTA+AGG 0.345545 4_1:+62873640 None:intergenic
CTTGTTGGAATCAAAGGAAT+TGG 0.351212 4_1:+62876252 None:intergenic
TAACTTACTGCAACTGCATT+AGG 0.356093 4_1:+62875981 None:intergenic
GACAGTACATACTCTTCATC+TGG 0.377897 4_1:+62873624 None:intergenic
CATTTGATCTTCACACAATT+GGG 0.378344 4_1:-62873455 Msa0562750:CDS
TGCATGCGGACGGGTGGAAT+TGG 0.378533 4_1:-62873390 Msa0562750:CDS
CCAATTGTGTGAAGATCAAA+TGG 0.384655 4_1:+62873456 None:intergenic
CTTCACGCAGGGCTTCAAAA+AGG 0.384676 4_1:+62874159 None:intergenic
GTGAAGGCATTCTCAGCAAT+AGG 0.388309 4_1:+62874005 None:intergenic
AGCAGAACACTCGCAGCGTC+TGG 0.400977 4_1:-62873796 Msa0562750:CDS
ACCCTGAAGTGATTGATATC+AGG 0.402772 4_1:-62873488 Msa0562750:CDS
CTTCTTCTTCTCTGATCCAA+TGG 0.403031 4_1:-62876308 Msa0562750:exon
ATGTTGAAGTGGTCTGTTAT+AGG 0.405696 4_1:-62872984 Msa0562750:three_prime_UTR
GAACATGGGATTTCTACTTC+TGG 0.411008 4_1:-62873928 Msa0562750:CDS
GCCTTCACTGGAATGGGTAT+TGG 0.421709 4_1:-62873990 Msa0562750:CDS
TTACAATATTAACATATTCC+AGG 0.423683 4_1:-62873563 Msa0562750:CDS
ATGTTCATGCCCTCGATGAT+TGG 0.426525 4_1:+62873945 None:intergenic
TGTGGATGGAGATGTCTTGT+TGG 0.426811 4_1:+62876571 None:intergenic
TGAAGGCATTCTCAGCAATA+GGG 0.426997 4_1:+62874006 None:intergenic
TGTCCATTCCTCCAATGTTC+CGG 0.431474 4_1:+62873272 None:intergenic
AAGAAGAAGAATGGAAATGA+AGG 0.435118 4_1:+62876331 None:intergenic
TATCATATGTTTATCCTCTC+AGG 0.437493 4_1:-62873313 Msa0562750:CDS
TGAAGGATTGGAAGAAGAAA+TGG 0.437869 4_1:-62874141 Msa0562750:CDS
TTGAAGAAGCTGAGATGGTT+AGG 0.441077 4_1:-62873599 Msa0562750:CDS
CAGCTCCCAATCCTTGGAAA+AGG 0.442930 4_1:+62876281 None:intergenic
CAAATTATTGCCCACTTCTA+GGG 0.442955 4_1:+62873012 None:intergenic
AGAAACCTAGCTGAAAAGTT+TGG 0.444574 4_1:-62874050 Msa0562750:CDS
ATTCGTGGGCCCGGTGGAGT+TGG 0.449345 4_1:-62873831 Msa0562750:CDS
ACTTCTGCAGCATCGAAACC+TGG 0.450955 4_1:-62875844 Msa0562750:CDS
CAAGCGACCATCTGAATGCC+AGG 0.452339 4_1:+62873753 None:intergenic
TGAGAGGATAAACATATGAT+AGG 0.455116 4_1:+62873315 None:intergenic
AATTAAGGAAGATTTATAGT+TGG 0.455356 4_1:+62876401 None:intergenic
ATAAATTAAATACCAATGTA+AGG 0.471889 4_1:+62873068 None:intergenic
GAGAATGCCTTCACTGGAAT+GGG 0.472536 4_1:-62873996 Msa0562750:CDS
TGAAGCCCTGCGTGAAGGAT+TGG 0.474938 4_1:-62874153 Msa0562750:CDS
AGCTCCCAATCCTTGGAAAA+GGG 0.481402 4_1:+62876282 None:intergenic
CCGGGCCCACGAATGACAAC+TGG 0.484379 4_1:+62873840 None:intergenic
ATTGCTGAGAATGCCTTCAC+TGG 0.485666 4_1:-62874002 Msa0562750:CDS
CCCCTTGTTCACCAATGTCT+TGG 0.487813 4_1:+62873515 None:intergenic
AAAATACCAGTTGTCATTCG+TGG 0.488255 4_1:-62873846 Msa0562750:CDS
ACCACATGGTGCAATAAGTA+AGG 0.488325 4_1:+62876508 None:intergenic
GGTGGAGTTGGTCGGCAACT+TGG 0.489359 4_1:-62873819 Msa0562750:CDS
GGTATTGGAGCTGCCATGAC+TGG 0.492586 4_1:-62873975 Msa0562750:CDS
CCAGTTGTCATTCGTGGGCC+CGG 0.493249 4_1:-62873840 Msa0562750:CDS
CCTTGGAAAAGGGTTGCCAT+TGG 0.493532 4_1:+62876292 None:intergenic
AAGTTGCCGACCAACTCCAC+CGG 0.494059 4_1:+62873821 None:intergenic
GGATCCTTGTGTTTGTGTCA+TGG 0.495221 4_1:-62874114 Msa0562750:CDS
GAAGTGGGCAATAATTTGAA+TGG 0.498712 4_1:-62873007 Msa0562750:three_prime_UTR
GATCCTTGTGTTTGTGTCAT+GGG 0.499148 4_1:-62874113 Msa0562750:CDS
AGAAGAAAGGAGTAGCTTGT+TGG 0.500236 4_1:+62876237 None:intergenic
TGCCAAGACATTGGTGAACA+AGG 0.503322 4_1:-62873517 Msa0562750:CDS
ACCTGATATCAATCACTTCA+GGG 0.512110 4_1:+62873487 None:intergenic
GACACATCGGGTTCTCATAG+TGG 0.512571 4_1:-62873418 Msa0562750:CDS
AACCAAATCTCTAACAATTG+TGG 0.513777 4_1:-62873900 Msa0562750:CDS
CAAGAAAAGCAAAGTGGCGA+TGG 0.515007 4_1:-62876550 Msa0562750:five_prime_UTR
TTCTTCCAATCCTTCACGCA+GGG 0.516415 4_1:+62874148 None:intergenic
TGGAATTGGTGCTAGTTTGA+CGG 0.517447 4_1:-62873376 Msa0562750:CDS
GAGTAGCTTGTTGGAATCAA+AGG 0.518306 4_1:+62876246 None:intergenic
TTCAATAAAGAAGACACATC+GGG 0.518935 4_1:-62873430 Msa0562750:CDS
TGAGAATGCCTTCACTGGAA+TGG 0.522043 4_1:-62873997 Msa0562750:CDS
GTTGGAATCAAAGGAATTGG+AGG 0.522681 4_1:+62876255 None:intergenic
GGAATGCTGCATTATACGTC+TGG 0.522811 4_1:-62873879 Msa0562750:CDS
GACTCCATATGCCGGAACAT+TGG 0.523095 4_1:-62873283 Msa0562750:CDS
GTGGAGGAGTGCATGCGGAC+GGG 0.523691 4_1:-62873399 Msa0562750:CDS
AGGTAACAGCTCCCAATCCT+TGG 0.528159 4_1:+62876275 None:intergenic
AATCATCGAGGGCATGAACA+TGG 0.528244 4_1:-62873943 Msa0562750:CDS
TTTAATTTAACAAACAAACT+AGG 0.528352 4_1:+62873157 None:intergenic
AAATACCAGTTGTCATTCGT+GGG 0.533477 4_1:-62873845 Msa0562750:CDS
AAGCTGAGATGGTTAGGCCC+GGG 0.538253 4_1:-62873593 Msa0562750:CDS
TTAAGGAAGATTTATAGTTG+GGG 0.544079 4_1:+62876403 None:intergenic
GAAGCTGAGATGGTTAGGCC+CGG 0.544271 4_1:-62873594 Msa0562750:CDS
GTGCCATTAGAAAATGCAGT+TGG 0.544689 4_1:-62876609 Msa0562750:five_prime_UTR
ATTTATTTGGGAAAATTGGA+CGG 0.546285 4_1:+62876375 None:intergenic
ACTGCAGTCACAATTTGAGC+AGG 0.546350 4_1:+62873240 None:intergenic
CATTAAGACAAAGACTAAAG+AGG 0.546890 4_1:-62876645 Msa0562750:five_prime_UTR
ATGCCGGAACATTGGAGGAA+TGG 0.546987 4_1:-62873275 Msa0562750:CDS
ATTGGAAGAAGAAATGGAAA+GGG 0.547209 4_1:-62874135 Msa0562750:CDS
GAGGAGTGCATGCGGACGGG+TGG 0.547477 4_1:-62873396 Msa0562750:CDS
GGATGGAGATGTCTTGTTGG+TGG 0.548772 4_1:+62876574 None:intergenic
TGCCATTAGAAAATGCAGTT+GGG 0.551733 4_1:-62876608 Msa0562750:five_prime_UTR
TCCAATACCCATTCCAGTGA+AGG 0.555423 4_1:+62873989 None:intergenic
TTCAACACCTTATAACGCGA+AGG 0.557324 4_1:-62873730 Msa0562750:CDS
GTGGGCCCGGTGGAGTTGGT+CGG 0.557377 4_1:-62873827 Msa0562750:CDS
TAAGGGATCTACGAGAAGAA+AGG 0.559476 4_1:+62876224 None:intergenic
GTCACTTGAAGAAGCTGAGA+TGG 0.561009 4_1:-62873604 Msa0562750:CDS
TCCATATGCCGGAACATTGG+AGG 0.562757 4_1:-62873280 Msa0562750:CDS
AGTTGCCGACCAACTCCACC+GGG 0.566918 4_1:+62873822 None:intergenic
ATCAATCCCTGGCATTCAGA+TGG 0.568464 4_1:-62873760 Msa0562750:CDS
TAAATACCAATGTAAGGTTG+CGG 0.570028 4_1:+62873074 None:intergenic
GATTGGCCTCAGACCAGTCA+TGG 0.570730 4_1:+62873962 None:intergenic
GATTGGAAGAAGAAATGGAA+AGG 0.571903 4_1:-62874136 Msa0562750:CDS
CAGTCACAATTTGAGCAGGT+TGG 0.573277 4_1:+62873244 None:intergenic
AGTGGAGGAGTGCATGCGGA+CGG 0.574301 4_1:-62873400 Msa0562750:CDS
TAATATTGTAACATGCTCCC+CGG 0.574738 4_1:+62873575 None:intergenic
CTTCTTCCAATCCTTCACGC+AGG 0.574955 4_1:+62874147 None:intergenic
CATGACATGATACCTCATCC+TGG 0.575595 4_1:+62873545 None:intergenic
GTGAGCAAGACTTTGAAGAC+TGG 0.581663 4_1:-62876032 Msa0562750:CDS
TATTAACATATTCCAGGATG+AGG 0.586788 4_1:-62873557 Msa0562750:CDS
AGCTGAGATGGTTAGGCCCG+GGG 0.588499 4_1:-62873592 Msa0562750:CDS
TAGGAGCATCCAAATAGTCA+TGG 0.589072 4_1:+62873334 None:intergenic
AAAACACCGCAACCTTACAT+TGG 0.591863 4_1:-62873080 Msa0562750:three_prime_UTR
AATATTGTAACATGCTCCCC+GGG 0.594446 4_1:+62873576 None:intergenic
TCCTTACTTATTGCACCATG+TGG 0.599734 4_1:-62876509 Msa0562750:five_prime_UTR
TCAACACCTTATAACGCGAA+GGG 0.602656 4_1:-62873729 Msa0562750:CDS
GCCAAGACATTGGTGAACAA+GGG 0.602952 4_1:-62873516 Msa0562750:CDS
TGTGTCATGGGTGAAGATGT+AGG 0.609135 4_1:-62874101 Msa0562750:CDS
TTCAGGTGAGCCCTAGAAGT+GGG 0.610227 4_1:-62873022 Msa0562750:three_prime_UTR
ATCATCGAGGGCATGAACAT+GGG 0.611161 4_1:-62873942 Msa0562750:CDS
CTTCTGCAGCATCGAAACCT+GGG 0.613569 4_1:-62875843 Msa0562750:intron
GAAGGCATTCTCAGCAATAG+GGG 0.613755 4_1:+62874007 None:intergenic
TGTTGTCAGATCTGATGCAA+AGG 0.616245 4_1:-62876054 Msa0562750:CDS
AATTTGAATGGATGTTGAAG+TGG 0.618042 4_1:-62872995 Msa0562750:three_prime_UTR
AATGTTCCGGCATATGGAGT+CGG 0.618120 4_1:+62873285 None:intergenic
ATTCAATAAAGAAGACACAT+CGG 0.620292 4_1:-62873431 Msa0562750:CDS
GATGTGCCGACTCCATATGC+CGG 0.624357 4_1:-62873291 Msa0562750:CDS
GATTTGATTTCAGAGAGGAA+AGG 0.624504 4_1:-62876086 Msa0562750:intron
TCATTATGGAGGATCTTACA+AGG 0.628639 4_1:-62874078 Msa0562750:CDS
GTTGTCATTCGTGGGCCCGG+TGG 0.632799 4_1:-62873837 Msa0562750:CDS
CCAAGACATTGGTGAACAAG+GGG 0.632861 4_1:-62873515 Msa0562750:CDS
ACAGTACATACTCTTCATCT+GGG 0.634502 4_1:+62873625 None:intergenic
GGTCTGAGGCCAATCATCGA+GGG 0.636424 4_1:-62873954 Msa0562750:CDS
TTTCGATGCTGCAGAAGTCG+CGG 0.636745 4_1:+62875849 None:intergenic
GAGCTGCCATGACTGGTCTG+AGG 0.641109 4_1:-62873968 Msa0562750:CDS
CATGCAAGCTGCCAAGACAT+TGG 0.643386 4_1:-62873526 Msa0562750:CDS
ATTCAGGTGAGCCCTAGAAG+TGG 0.646477 4_1:-62873023 Msa0562750:three_prime_UTR
CATCCACAAGAAAAGCAAAG+TGG 0.649144 4_1:-62876556 Msa0562750:five_prime_UTR
ATGCTGCATTATACGTCTGG+AGG 0.653371 4_1:-62873876 Msa0562750:CDS
AAGCGACCATCTGAATGCCA+GGG 0.661617 4_1:+62873754 None:intergenic
TCATAGTGGAGGAGTGCATG+CGG 0.664859 4_1:-62873404 Msa0562750:CDS
GAAGATGTAGGTCATTATGG+AGG 0.665183 4_1:-62874089 Msa0562750:CDS
ACATCGGGTTCTCATAGTGG+AGG 0.676270 4_1:-62873415 Msa0562750:CDS
TGGAGTCGGCACATCCTGAG+AGG 0.680395 4_1:+62873299 None:intergenic
CTAAAGAGGTGCATAATGTG+AGG 0.680653 4_1:-62876631 Msa0562750:five_prime_UTR
TGGTCTGAGGCCAATCATCG+AGG 0.681253 4_1:-62873955 Msa0562750:CDS
AACATTGGAGGAATGGACAG+TGG 0.695713 4_1:-62873268 Msa0562750:CDS
TCACCCATGACACAAACACA+AGG 0.709163 4_1:+62874110 None:intergenic
TAGGGGTGTCCAAAACTCTG+AGG 0.714225 4_1:+62874024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTAAGATTAATAG+CGG - chr4_1:62874198-62874217 Msa0562750:intron 10.0%
!! AAAATAAAAATACATAAAGA+CGG + chr4_1:62874715-62874734 None:intergenic 10.0%
!! TCAAAAAAATAAATATTAAC+TGG - chr4_1:62874836-62874855 Msa0562750:intron 10.0%
!! AAACTAAAAACAAAAAAAAA+AGG + chr4_1:62876608-62876627 None:intergenic 10.0%
!!! TTTTGAAAAATTTCTTGTAT+CGG + chr4_1:62874140-62874159 None:intergenic 15.0%
!!! ATTTTTTTAATAATGTATCG+AGG + chr4_1:62874180-62874199 None:intergenic 15.0%
!! CTAACCAAAAAAAAAATATA+GGG + chr4_1:62874663-62874682 None:intergenic 15.0%
!! TCTAACCAAAAAAAAAATAT+AGG + chr4_1:62874664-62874683 None:intergenic 15.0%
!! TCAGAAAATAAAATAGAAAA+AGG + chr4_1:62875203-62875222 None:intergenic 15.0%
!!! TTTAATTTAACAAACAAACT+AGG + chr4_1:62876412-62876431 None:intergenic 15.0%
!! ATAAATTAAATACCAATGTA+AGG + chr4_1:62876501-62876520 None:intergenic 15.0%
!! ATTAAGGAAGATTTATAGTT+GGG + chr4_1:62873167-62873186 None:intergenic 20.0%
!! AATTAAGGAAGATTTATAGT+TGG + chr4_1:62873168-62873187 None:intergenic 20.0%
!!! AAAAGAGTGTGAATTTATTT+GGG + chr4_1:62873206-62873225 None:intergenic 20.0%
!!! AAAAAGAGTGTGAATTTATT+TGG + chr4_1:62873207-62873226 None:intergenic 20.0%
!!! GTTTGAAAATTGTGTTTTTT+TGG - chr4_1:62873661-62873680 Msa0562750:CDS 20.0%
!! TCTCATTTATCAATATCAAA+GGG + chr4_1:62875070-62875089 None:intergenic 20.0%
!! ATCTCATTTATCAATATCAA+AGG + chr4_1:62875071-62875090 None:intergenic 20.0%
!! TTACAATATTAACATATTCC+AGG - chr4_1:62876003-62876022 Msa0562750:CDS 20.0%
!!! CTTTGTCTTAATGTTGTTTT+TGG + chr4_1:62872914-62872933 None:intergenic 25.0%
!! AAAAAAAGAACCTTTGAGAA+CGG - chr4_1:62873098-62873117 Msa0562750:three_prime_UTR 25.0%
! TTAAGGAAGATTTATAGTTG+GGG + chr4_1:62873166-62873185 None:intergenic 25.0%
! ATTTATTTGGGAAAATTGGA+CGG + chr4_1:62873194-62873213 None:intergenic 25.0%
! GTGAATTTATTTGGGAAAAT+TGG + chr4_1:62873198-62873217 None:intergenic 25.0%
! TCAAAAAAACGAACCTTTAA+GGG + chr4_1:62873362-62873381 None:intergenic 25.0%
!!! TTGAATGGTTTTTTGATTCT+GGG - chr4_1:62873386-62873405 Msa0562750:CDS 25.0%
! GGTTTCTCTTATAAGTTAAT+GGG - chr4_1:62873407-62873426 Msa0562750:CDS 25.0%
! GTTTCTCTTATAAGTTAATG+GGG - chr4_1:62873408-62873427 Msa0562750:CDS 25.0%
! AACAACATCAAATGTTTGTA+GGG + chr4_1:62873758-62873777 None:intergenic 25.0%
!! TTCAATTTTACAAAGCAGAT+AGG - chr4_1:62873915-62873934 Msa0562750:CDS 25.0%
!!! CTAATTTGTGCAGAAATTTT+TGG + chr4_1:62874311-62874330 None:intergenic 25.0%
!! TTTTATTCTTCTCTCTGATT+GGG + chr4_1:62874478-62874497 None:intergenic 25.0%
!!! GGAACCCTATATTTTTTTTT+TGG - chr4_1:62874656-62874675 Msa0562750:intron 25.0%
! ATTACATTTCAACTATGACT+TGG + chr4_1:62875104-62875123 None:intergenic 25.0%
!! TGTTTTGCTTTATAACCTTA+AGG - chr4_1:62875911-62875930 Msa0562750:intron 25.0%
! ATTCAATAAAGAAGACACAT+CGG - chr4_1:62876135-62876154 Msa0562750:intron 25.0%
! TGAAAATTTCCATGACTATT+TGG - chr4_1:62876223-62876242 Msa0562750:CDS 25.0%
!! ACTTAATTCGGTTATCTTTT+TGG - chr4_1:62876383-62876402 Msa0562750:five_prime_UTR 25.0%
!!! GTTTGCATTTTTTTAGATTC+AGG - chr4_1:62876527-62876546 Msa0562750:five_prime_UTR 25.0%
CATTAAGACAAAGACTAAAG+AGG - chr4_1:62872921-62872940 Msa0562750:three_prime_UTR 30.0%
!!! TGTTTTGTTTCTTTACCACA+TGG + chr4_1:62873075-62873094 None:intergenic 30.0%
AAAATTGGACGGAGAAATTA+AGG + chr4_1:62873183-62873202 None:intergenic 30.0%
AAGAAGAAGAATGGAAATGA+AGG + chr4_1:62873238-62873257 None:intergenic 30.0%
AAGAAGAAGAAGAAGAAGAA+TGG + chr4_1:62873247-62873266 None:intergenic 30.0%
GTCAAAAAAACGAACCTTTA+AGG + chr4_1:62873363-62873382 None:intergenic 30.0%
!!! GTTGAATGGTTTTTTGATTC+TGG - chr4_1:62873385-62873404 Msa0562750:CDS 30.0%
GGGTTTCTCTTATAAGTTAA+TGG - chr4_1:62873406-62873425 Msa0562750:CDS 30.0%
AATGAAAGAAACAGCATCAA+TGG + chr4_1:62873452-62873471 None:intergenic 30.0%
!! TAACTGATTTGATTTCAGAG+AGG - chr4_1:62873475-62873494 Msa0562750:CDS 30.0%
CCATGCAATTACAAAAAATG+TGG + chr4_1:62873632-62873651 None:intergenic 30.0%
!!! CCACATTTTTTGTAATTGCA+TGG - chr4_1:62873629-62873648 Msa0562750:CDS 30.0%
!!! GTGTTTTTTTGGTTGTTGTT+TGG - chr4_1:62873672-62873691 Msa0562750:CDS 30.0%
ACAACATCAAATGTTTGTAG+GGG + chr4_1:62873757-62873776 None:intergenic 30.0%
GAACAACATCAAATGTTTGT+AGG + chr4_1:62873759-62873778 None:intergenic 30.0%
CTTCAATTAAGAATGACTTC+AGG - chr4_1:62874030-62874049 Msa0562750:CDS 30.0%
TCAAAACTCCCAATATGATA+CGG - chr4_1:62874154-62874173 Msa0562750:CDS 30.0%
AGTACTAATGATGTTCTCTT+TGG + chr4_1:62874361-62874380 None:intergenic 30.0%
! CTTTTATTCTTCTCTCTGAT+TGG + chr4_1:62874479-62874498 None:intergenic 30.0%
GATGTTGAGATTGAGTTAAT+CGG - chr4_1:62874588-62874607 Msa0562750:intron 30.0%
! ACACGATTCTTCACTATTTT+TGG - chr4_1:62874920-62874939 Msa0562750:intron 30.0%
!!! CTTCACTATTTTTGGAGTAT+CGG - chr4_1:62874928-62874947 Msa0562750:intron 30.0%
!!! TTCACTATTTTTGGAGTATC+GGG - chr4_1:62874929-62874948 Msa0562750:intron 30.0%
GAAAAAGGAAAAAATGTGCA+CGG + chr4_1:62875188-62875207 None:intergenic 30.0%
ATTGGAAGAAGAAATGGAAA+GGG - chr4_1:62875431-62875450 Msa0562750:intron 30.0%
AACCAAATCTCTAACAATTG+TGG - chr4_1:62875666-62875685 Msa0562750:intron 30.0%
TTCCACAATTGTTAGAGATT+TGG + chr4_1:62875671-62875690 None:intergenic 30.0%
! TCATATTTTCAATCAATCCC+TGG - chr4_1:62875795-62875814 Msa0562750:intron 30.0%
TATTAACATATTCCAGGATG+AGG - chr4_1:62876009-62876028 Msa0562750:CDS 30.0%
CATTTGATCTTCACACAATT+GGG - chr4_1:62876111-62876130 Msa0562750:intron 30.0%
TTCAATAAAGAAGACACATC+GGG - chr4_1:62876136-62876155 Msa0562750:intron 30.0%
! GTCATGGAAATTTTCAGTAA+TGG + chr4_1:62876219-62876238 None:intergenic 30.0%
TGAGAGGATAAACATATGAT+AGG + chr4_1:62876254-62876273 None:intergenic 30.0%
TATCATATGTTTATCCTCTC+AGG - chr4_1:62876253-62876272 Msa0562750:CDS 30.0%
CTGCAAAAACACACTTAATT+CGG - chr4_1:62876371-62876390 Msa0562750:five_prime_UTR 30.0%
ACTTCGAAAGCAAAAGAAAA+AGG + chr4_1:62876464-62876483 None:intergenic 30.0%
TAAATACCAATGTAAGGTTG+CGG + chr4_1:62876495-62876514 None:intergenic 30.0%
AATTTGAATGGATGTTGAAG+TGG - chr4_1:62876571-62876590 Msa0562750:five_prime_UTR 30.0%
TGCCATTAGAAAATGCAGTT+GGG - chr4_1:62872958-62872977 Msa0562750:three_prime_UTR 35.0%
! ATCCCAACTGCATTTTCTAA+TGG + chr4_1:62872963-62872982 None:intergenic 35.0%
AATGCAGTTGGGATCTAATT+AGG - chr4_1:62872969-62872988 Msa0562750:three_prime_UTR 35.0%
CTTGTTGGAATCAAAGGAAT+TGG + chr4_1:62873317-62873336 None:intergenic 35.0%
!!! CGTTTTTTTGACTCGTTGAA+TGG - chr4_1:62873371-62873390 Msa0562750:CDS 35.0%
! GATTTGATTTCAGAGAGGAA+AGG - chr4_1:62873480-62873499 Msa0562750:CDS 35.0%
TAACTTACTGCAACTGCATT+AGG + chr4_1:62873588-62873607 None:intergenic 35.0%
! TGTTGTTTGGTTATAGACAC+AGG - chr4_1:62873685-62873704 Msa0562750:CDS 35.0%
AGAAACTGAGTATAACTCAC+CGG - chr4_1:62874536-62874555 Msa0562750:intron 35.0%
AATCTCAACATCAGCATCAT+TGG + chr4_1:62874580-62874599 None:intergenic 35.0%
ATTGAGTTAATCGGTGGTAA+TGG - chr4_1:62874597-62874616 Msa0562750:intron 35.0%
!! TAAGACAGAAGTATCGTTGT+CGG - chr4_1:62874770-62874789 Msa0562750:intron 35.0%
ATCAGATATCAGATACGTGT+CGG - chr4_1:62874897-62874916 Msa0562750:intron 35.0%
!!! TCACTATTTTTGGAGTATCG+GGG - chr4_1:62874930-62874949 Msa0562750:intron 35.0%
TCACAGCTGAAAAGAAGATT+AGG - chr4_1:62874955-62874974 Msa0562750:intron 35.0%
TAGGCCAAAACAGTGAAATA+TGG - chr4_1:62874974-62874993 Msa0562750:intron 35.0%
! TAGGCCATATTTCACTGTTT+TGG + chr4_1:62874981-62875000 None:intergenic 35.0%
GGTAAAAATGTCTTCATGCT+GGG + chr4_1:62875049-62875068 None:intergenic 35.0%
! GTATGCTCTTTTGATCGTAA+AGG + chr4_1:62875296-62875315 None:intergenic 35.0%
!! CAGATGTGCATTTTATTTGC+AGG - chr4_1:62875373-62875392 Msa0562750:intron 35.0%
TGAAGGATTGGAAGAAGAAA+TGG - chr4_1:62875425-62875444 Msa0562750:intron 35.0%
GATTGGAAGAAGAAATGGAA+AGG - chr4_1:62875430-62875449 Msa0562750:intron 35.0%
TCATTATGGAGGATCTTACA+AGG - chr4_1:62875488-62875507 Msa0562750:intron 35.0%
AGAAACCTAGCTGAAAAGTT+TGG - chr4_1:62875516-62875535 Msa0562750:intron 35.0%
AAAATACCAGTTGTCATTCG+TGG - chr4_1:62875720-62875739 Msa0562750:intron 35.0%
AAATACCAGTTGTCATTCGT+GGG - chr4_1:62875721-62875740 Msa0562750:intron 35.0%
CATGCTCAAAAAGAATCACA+GGG + chr4_1:62875893-62875912 None:intergenic 35.0%
ACATGCTCAAAAAGAATCAC+AGG + chr4_1:62875894-62875913 None:intergenic 35.0%
ACAGTACATACTCTTCATCT+GGG + chr4_1:62875944-62875963 None:intergenic 35.0%
TAATATTGTAACATGCTCCC+CGG + chr4_1:62875994-62876013 None:intergenic 35.0%
ACCTGATATCAATCACTTCA+GGG + chr4_1:62876082-62876101 None:intergenic 35.0%
CCAATTGTGTGAAGATCAAA+TGG + chr4_1:62876113-62876132 None:intergenic 35.0%
CCATTTGATCTTCACACAAT+TGG - chr4_1:62876110-62876129 Msa0562750:intron 35.0%
!! TGTGTTTTTGCAGTAATCAC+TGG + chr4_1:62876364-62876383 None:intergenic 35.0%
CAAATTATTGCCCACTTCTA+GGG + chr4_1:62876557-62876576 None:intergenic 35.0%
TCAAATTATTGCCCACTTCT+AGG + chr4_1:62876558-62876577 None:intergenic 35.0%
GAAGTGGGCAATAATTTGAA+TGG - chr4_1:62876559-62876578 Msa0562750:five_prime_UTR 35.0%
ATGTTGAAGTGGTCTGTTAT+AGG - chr4_1:62876582-62876601 Msa0562750:five_prime_UTR 35.0%
! CTAAAGAGGTGCATAATGTG+AGG - chr4_1:62872935-62872954 Msa0562750:three_prime_UTR 40.0%
! GTGCCATTAGAAAATGCAGT+TGG - chr4_1:62872957-62872976 Msa0562750:three_prime_UTR 40.0%
!! CACTTTGCTTTTCTTGTGGA+TGG + chr4_1:62873012-62873031 None:intergenic 40.0%
CATCCACAAGAAAAGCAAAG+TGG - chr4_1:62873010-62873029 Msa0562750:three_prime_UTR 40.0%
TCCTTACTTATTGCACCATG+TGG - chr4_1:62873057-62873076 Msa0562750:three_prime_UTR 40.0%
ACCACATGGTGCAATAAGTA+AGG + chr4_1:62873061-62873080 None:intergenic 40.0%
!! CTCTGTTTTTCCGTTCTCAA+AGG + chr4_1:62873111-62873130 None:intergenic 40.0%
CTTCTTCTTCTCTGATCCAA+TGG - chr4_1:62873258-62873277 Msa0562750:CDS 40.0%
GTTGGAATCAAAGGAATTGG+AGG + chr4_1:62873314-62873333 None:intergenic 40.0%
!! GAGTAGCTTGTTGGAATCAA+AGG + chr4_1:62873323-62873342 None:intergenic 40.0%
! AGAAGAAAGGAGTAGCTTGT+TGG + chr4_1:62873332-62873351 None:intergenic 40.0%
TAAGGGATCTACGAGAAGAA+AGG + chr4_1:62873345-62873364 None:intergenic 40.0%
TCTTCTCGTAGATCCCTTAA+AGG - chr4_1:62873346-62873365 Msa0562750:CDS 40.0%
TGTTGTCAGATCTGATGCAA+AGG - chr4_1:62873512-62873531 Msa0562750:CDS 40.0%
AGATAGGCTATGCTTCAATG+AGG - chr4_1:62873931-62873950 Msa0562750:CDS 40.0%
GCTTCAATGAGGAGAAGAAT+TGG - chr4_1:62873942-62873961 Msa0562750:CDS 40.0%
TATCGAGGCCGTATCATATT+GGG + chr4_1:62874165-62874184 None:intergenic 40.0%
GTTGAGATTGAGTTAATCGG+TGG - chr4_1:62874591-62874610 Msa0562750:intron 40.0%
! TACACGTATCGGAGAAGTAT+CGG + chr4_1:62874862-62874881 None:intergenic 40.0%
ACTTCTCCGATACGTGTATT+CGG - chr4_1:62874864-62874883 Msa0562750:intron 40.0%
ATACGTCCGAATACACGTAT+CGG + chr4_1:62874873-62874892 None:intergenic 40.0%
ATACGTGTATTCGGACGTAT+CGG - chr4_1:62874873-62874892 Msa0562750:intron 40.0%
GTGAAATATGGCCTAAACTG+TGG - chr4_1:62874986-62875005 Msa0562750:intron 40.0%
AAATATGGCCTAAACTGTGG+AGG - chr4_1:62874989-62875008 Msa0562750:intron 40.0%
AATATGGCCTAAACTGTGGA+GGG - chr4_1:62874990-62875009 Msa0562750:intron 40.0%
GGGTAAAAATGTCTTCATGC+TGG + chr4_1:62875050-62875069 None:intergenic 40.0%
CAAGTCGATAGTTTCCATCT+AGG - chr4_1:62875227-62875246 Msa0562750:intron 40.0%
!! GATGTCTTGTTGTTCCTAGA+TGG + chr4_1:62875244-62875263 None:intergenic 40.0%
GATCCTTGTGTTTGTGTCAT+GGG - chr4_1:62875453-62875472 Msa0562750:intron 40.0%
GGTGAAGATGTAGGTCATTA+TGG - chr4_1:62875474-62875493 Msa0562750:intron 40.0%
GAAGATGTAGGTCATTATGG+AGG - chr4_1:62875477-62875496 Msa0562750:intron 40.0%
!! TGAAGGCATTCTCAGCAATA+GGG + chr4_1:62875563-62875582 None:intergenic 40.0%
GAACATGGGATTTCTACTTC+TGG - chr4_1:62875638-62875657 Msa0562750:intron 40.0%
TTCAACACCTTATAACGCGA+AGG - chr4_1:62875836-62875855 Msa0562750:intron 40.0%
TCAACACCTTATAACGCGAA+GGG - chr4_1:62875837-62875856 Msa0562750:intron 40.0%
! CATCTGGGATTCTTTCCTTA+AGG + chr4_1:62875929-62875948 None:intergenic 40.0%
GACAGTACATACTCTTCATC+TGG + chr4_1:62875945-62875964 None:intergenic 40.0%
TTGAAGAAGCTGAGATGGTT+AGG - chr4_1:62875967-62875986 Msa0562750:intron 40.0%
AATATTGTAACATGCTCCCC+GGG + chr4_1:62875993-62876012 None:intergenic 40.0%
ACCCTGAAGTGATTGATATC+AGG - chr4_1:62876078-62876097 Msa0562750:intron 40.0%
GACCTGATATCAATCACTTC+AGG + chr4_1:62876083-62876102 None:intergenic 40.0%
!! TGGAATTGGTGCTAGTTTGA+CGG - chr4_1:62876190-62876209 Msa0562750:intron 40.0%
!! TAGGAGCATCCAAATAGTCA+TGG + chr4_1:62876235-62876254 None:intergenic 40.0%
AAAACACCGCAACCTTACAT+TGG - chr4_1:62876486-62876505 Msa0562750:five_prime_UTR 40.0%
TGTGGATGGAGATGTCTTGT+TGG + chr4_1:62872998-62873017 None:intergenic 45.0%
!! TCGCCACTTTGCTTTTCTTG+TGG + chr4_1:62873016-62873035 None:intergenic 45.0%
CAAGAAAAGCAAAGTGGCGA+TGG - chr4_1:62873016-62873035 Msa0562750:three_prime_UTR 45.0%
! GCAACCCTTTTCCAAGGATT+GGG - chr4_1:62873280-62873299 Msa0562750:CDS 45.0%
AGCTCCCAATCCTTGGAAAA+GGG + chr4_1:62873287-62873306 None:intergenic 45.0%
! GTGAGCAAGACTTTGAAGAC+TGG - chr4_1:62873534-62873553 Msa0562750:CDS 45.0%
TTGTAGGGGAAAACATACCC+AGG + chr4_1:62873743-62873762 None:intergenic 45.0%
! ATCGGGGCTTCATAGCTTTT+CGG + chr4_1:62874093-62874112 None:intergenic 45.0%
ATCCGTATCGTGTCAGGTAT+CGG + chr4_1:62874111-62874130 None:intergenic 45.0%
TATCGTATCCGTATCGTGTC+AGG + chr4_1:62874117-62874136 None:intergenic 45.0%
GTATCGAGGCCGTATCATAT+TGG + chr4_1:62874166-62874185 None:intergenic 45.0%
AACTGAGTATAACTCACCGG+AGG - chr4_1:62874539-62874558 Msa0562750:intron 45.0%
!! TCGGTGGTAATGGTTAGAAG+AGG - chr4_1:62874607-62874626 Msa0562750:intron 45.0%
!! CGGTGGTAATGGTTAGAAGA+GGG - chr4_1:62874608-62874627 Msa0562750:intron 45.0%
AGGGAATAGCCATCACTTAG+TGG - chr4_1:62874627-62874646 Msa0562750:intron 45.0%
ATATGGCCTAAACTGTGGAG+GGG - chr4_1:62874991-62875010 Msa0562750:intron 45.0%
TCTTTACCCCTCCACAGTTT+AGG + chr4_1:62875000-62875019 None:intergenic 45.0%
TTCTTCCAATCCTTCACGCA+GGG + chr4_1:62875421-62875440 None:intergenic 45.0%
GGATCCTTGTGTTTGTGTCA+TGG - chr4_1:62875452-62875471 Msa0562750:intron 45.0%
TCACCCATGACACAAACACA+AGG + chr4_1:62875459-62875478 None:intergenic 45.0%
TGTGTCATGGGTGAAGATGT+AGG - chr4_1:62875465-62875484 Msa0562750:intron 45.0%
!! GAAGGCATTCTCAGCAATAG+GGG + chr4_1:62875562-62875581 None:intergenic 45.0%
!! GTGAAGGCATTCTCAGCAAT+AGG + chr4_1:62875564-62875583 None:intergenic 45.0%
ATTGCTGAGAATGCCTTCAC+TGG - chr4_1:62875564-62875583 Msa0562750:intron 45.0%
TGAGAATGCCTTCACTGGAA+TGG - chr4_1:62875569-62875588 Msa0562750:intron 45.0%
GAGAATGCCTTCACTGGAAT+GGG - chr4_1:62875570-62875589 Msa0562750:intron 45.0%
TCCAATACCCATTCCAGTGA+AGG + chr4_1:62875580-62875599 None:intergenic 45.0%
ATGTTCATGCCCTCGATGAT+TGG + chr4_1:62875624-62875643 None:intergenic 45.0%
! AATCATCGAGGGCATGAACA+TGG - chr4_1:62875623-62875642 Msa0562750:intron 45.0%
! ATCATCGAGGGCATGAACAT+GGG - chr4_1:62875624-62875643 Msa0562750:intron 45.0%
GGAATGCTGCATTATACGTC+TGG - chr4_1:62875687-62875706 Msa0562750:intron 45.0%
ATGCTGCATTATACGTCTGG+AGG - chr4_1:62875690-62875709 Msa0562750:intron 45.0%
ATCAATCCCTGGCATTCAGA+TGG - chr4_1:62875806-62875825 Msa0562750:intron 45.0%
ATCAAGCCCTTCGCGTTATA+AGG + chr4_1:62875846-62875865 None:intergenic 45.0%
GTCACTTGAAGAAGCTGAGA+TGG - chr4_1:62875962-62875981 Msa0562750:intron 45.0%
CATGACATGATACCTCATCC+TGG + chr4_1:62876024-62876043 None:intergenic 45.0%
TGCCAAGACATTGGTGAACA+AGG - chr4_1:62876049-62876068 Msa0562750:CDS 45.0%
GCCAAGACATTGGTGAACAA+GGG - chr4_1:62876050-62876069 Msa0562750:CDS 45.0%
CCAAGACATTGGTGAACAAG+GGG - chr4_1:62876051-62876070 Msa0562750:CDS 45.0%
AATGTTCCGGCATATGGAGT+CGG + chr4_1:62876284-62876303 None:intergenic 45.0%
TGTCCATTCCTCCAATGTTC+CGG + chr4_1:62876297-62876316 None:intergenic 45.0%
AACATTGGAGGAATGGACAG+TGG - chr4_1:62876298-62876317 Msa0562750:exon 45.0%
CAGTCACAATTTGAGCAGGT+TGG + chr4_1:62876325-62876344 None:intergenic 45.0%
ACTGCAGTCACAATTTGAGC+AGG + chr4_1:62876329-62876348 None:intergenic 45.0%
! GGATGGAGATGTCTTGTTGG+TGG + chr4_1:62872995-62873014 None:intergenic 50.0%
CCTTGGAAAAGGGTTGCCAT+TGG + chr4_1:62873277-62873296 None:intergenic 50.0%
! CCAATGGCAACCCTTTTCCA+AGG - chr4_1:62873274-62873293 Msa0562750:CDS 50.0%
! GGCAACCCTTTTCCAAGGAT+TGG - chr4_1:62873279-62873298 Msa0562750:CDS 50.0%
CAGCTCCCAATCCTTGGAAA+AGG + chr4_1:62873288-62873307 None:intergenic 50.0%
AGGTAACAGCTCCCAATCCT+TGG + chr4_1:62873294-62873313 None:intergenic 50.0%
TTTCGATGCTGCAGAAGTCG+CGG + chr4_1:62873720-62873739 None:intergenic 50.0%
! ACTTCTGCAGCATCGAAACC+TGG - chr4_1:62873722-62873741 Msa0562750:CDS 50.0%
! CTTCTGCAGCATCGAAACCT+GGG - chr4_1:62873723-62873742 Msa0562750:CDS 50.0%
CTGTACGAAGCATACGCTGA+AGG + chr4_1:62874056-62874075 None:intergenic 50.0%
TCCGTATCGTGTCAGGTATC+GGG + chr4_1:62874110-62874129 None:intergenic 50.0%
!! TAACTCACCGGAGGTGTTGA+TGG - chr4_1:62874548-62874567 Msa0562750:intron 50.0%
TCCTCGTCACCACTAAGTGA+TGG + chr4_1:62874639-62874658 None:intergenic 50.0%
GTCTTCATGCTGGGACGAAA+AGG + chr4_1:62875040-62875059 None:intergenic 50.0%
CTTCACGCAGGGCTTCAAAA+AGG + chr4_1:62875410-62875429 None:intergenic 50.0%
!!! CTTTTTGAAGCCCTGCGTGA+AGG - chr4_1:62875408-62875427 Msa0562750:intron 50.0%
CTTCTTCCAATCCTTCACGC+AGG + chr4_1:62875422-62875441 None:intergenic 50.0%
! GGTCGCCAAACTTTTCAGCT+AGG + chr4_1:62875524-62875543 None:intergenic 50.0%
! GTTTGGCGACCTCAGAGTTT+TGG - chr4_1:62875533-62875552 Msa0562750:intron 50.0%
!! TAGGGGTGTCCAAAACTCTG+AGG + chr4_1:62875545-62875564 None:intergenic 50.0%
GCCTTCACTGGAATGGGTAT+TGG - chr4_1:62875576-62875595 Msa0562750:intron 50.0%
AAGCGACCATCTGAATGCCA+GGG + chr4_1:62875815-62875834 None:intergenic 50.0%
CATGCAAGCTGCCAAGACAT+TGG - chr4_1:62876040-62876059 Msa0562750:CDS 50.0%
CCCCTTGTTCACCAATGTCT+TGG + chr4_1:62876054-62876073 None:intergenic 50.0%
GACACATCGGGTTCTCATAG+TGG - chr4_1:62876148-62876167 Msa0562750:intron 50.0%
ACATCGGGTTCTCATAGTGG+AGG - chr4_1:62876151-62876170 Msa0562750:intron 50.0%
! TCATAGTGGAGGAGTGCATG+CGG - chr4_1:62876162-62876181 Msa0562750:intron 50.0%
GACTCCATATGCCGGAACAT+TGG - chr4_1:62876283-62876302 Msa0562750:CDS 50.0%
TCCATATGCCGGAACATTGG+AGG - chr4_1:62876286-62876305 Msa0562750:CDS 50.0%
TCCTCCAATGTTCCGGCATA+TGG + chr4_1:62876290-62876309 None:intergenic 50.0%
ATGCCGGAACATTGGAGGAA+TGG - chr4_1:62876291-62876310 Msa0562750:CDS 50.0%
ATTCAGGTGAGCCCTAGAAG+TGG - chr4_1:62876543-62876562 Msa0562750:five_prime_UTR 50.0%
TTCAGGTGAGCCCTAGAAGT+GGG - chr4_1:62876544-62876563 Msa0562750:five_prime_UTR 50.0%
! GGGGCTTCATAGCTTTTCGG+TGG + chr4_1:62874090-62874109 None:intergenic 55.0%
! CCGTATCGTGTCAGGTATCG+GGG + chr4_1:62874109-62874128 None:intergenic 55.0%
CCCCGATACCTGACACGATA+CGG - chr4_1:62874106-62874125 Msa0562750:CDS 55.0%
GTTGCCTCCATCAACACCTC+CGG + chr4_1:62874558-62874577 None:intergenic 55.0%
! GCCATCACTTAGTGGTGACG+AGG - chr4_1:62874635-62874654 Msa0562750:intron 55.0%
TGAAGCCCTGCGTGAAGGAT+TGG - chr4_1:62875413-62875432 Msa0562750:intron 55.0%
! GGTATTGGAGCTGCCATGAC+TGG - chr4_1:62875591-62875610 Msa0562750:intron 55.0%
!! GATTGGCCTCAGACCAGTCA+TGG + chr4_1:62875607-62875626 None:intergenic 55.0%
! TGGTCTGAGGCCAATCATCG+AGG - chr4_1:62875611-62875630 Msa0562750:intron 55.0%
! GGTCTGAGGCCAATCATCGA+GGG - chr4_1:62875612-62875631 Msa0562750:intron 55.0%
AAGTTGCCGACCAACTCCAC+CGG + chr4_1:62875748-62875767 None:intergenic 55.0%
CAAGCGACCATCTGAATGCC+AGG + chr4_1:62875816-62875835 None:intergenic 55.0%
GAAGCTGAGATGGTTAGGCC+CGG - chr4_1:62875972-62875991 Msa0562750:intron 55.0%
AAGCTGAGATGGTTAGGCCC+GGG - chr4_1:62875973-62875992 Msa0562750:intron 55.0%
!! GATGTGCCGACTCCATATGC+CGG - chr4_1:62876275-62876294 Msa0562750:CDS 55.0%
!! CTCACCGGAGGTGTTGATGG+AGG - chr4_1:62874551-62874570 Msa0562750:intron 60.0%
!! GAGCTGCCATGACTGGTCTG+AGG - chr4_1:62875598-62875617 Msa0562750:intron 60.0%
CCAGTTGTCATTCGTGGGCC+CGG - chr4_1:62875726-62875745 Msa0562750:intron 60.0%
AGTTGCCGACCAACTCCACC+GGG + chr4_1:62875747-62875766 None:intergenic 60.0%
! GGTGGAGTTGGTCGGCAACT+TGG - chr4_1:62875747-62875766 Msa0562750:intron 60.0%
AGCAGAACACTCGCAGCGTC+TGG - chr4_1:62875770-62875789 Msa0562750:intron 60.0%
AGCTGAGATGGTTAGGCCCG+GGG - chr4_1:62875974-62875993 Msa0562750:intron 60.0%
! AGTGGAGGAGTGCATGCGGA+CGG - chr4_1:62876166-62876185 Msa0562750:intron 60.0%
TGCATGCGGACGGGTGGAAT+TGG - chr4_1:62876176-62876195 Msa0562750:intron 60.0%
TGGAGTCGGCACATCCTGAG+AGG + chr4_1:62876270-62876289 None:intergenic 60.0%
CCGGGCCCACGAATGACAAC+TGG + chr4_1:62875729-62875748 None:intergenic 65.0%
GTTGTCATTCGTGGGCCCGG+TGG - chr4_1:62875729-62875748 Msa0562750:intron 65.0%
ATTCGTGGGCCCGGTGGAGT+TGG - chr4_1:62875735-62875754 Msa0562750:intron 65.0%
! GTGGAGGAGTGCATGCGGAC+GGG - chr4_1:62876167-62876186 Msa0562750:intron 65.0%
! GTGGGCCCGGTGGAGTTGGT+CGG - chr4_1:62875739-62875758 Msa0562750:intron 70.0%
! GAGGAGTGCATGCGGACGGG+TGG - chr4_1:62876170-62876189 Msa0562750:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 62872905 62876683 62872905 ID=Msa0562750;Name=Msa0562750
chr4_1 mRNA 62872905 62876683 62872905 ID=Msa0562750-mRNA-1;Parent=Msa0562750;Name=Msa0562750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=372|1|1|1|1|1|4|316|404
chr4_1 exon 62872905 62874193 62872905 ID=Msa0562750-mRNA-1:exon:19857;Parent=Msa0562750-mRNA-1
chr4_1 exon 62875844 62875887 62875844 ID=Msa0562750-mRNA-1:exon:19856;Parent=Msa0562750-mRNA-1
chr4_1 exon 62875989 62876095 62875989 ID=Msa0562750-mRNA-1:exon:19855;Parent=Msa0562750-mRNA-1
chr4_1 exon 62876221 62876683 62876221 ID=Msa0562750-mRNA-1:exon:19854;Parent=Msa0562750-mRNA-1
chr4_1 five_prime_UTR 62876312 62876683 62876312 ID=Msa0562750-mRNA-1:five_prime_utr;Parent=Msa0562750-mRNA-1
chr4_1 CDS 62876221 62876311 62876221 ID=Msa0562750-mRNA-1:cds;Parent=Msa0562750-mRNA-1
chr4_1 CDS 62875989 62876095 62875989 ID=Msa0562750-mRNA-1:cds;Parent=Msa0562750-mRNA-1
chr4_1 CDS 62875844 62875887 62875844 ID=Msa0562750-mRNA-1:cds;Parent=Msa0562750-mRNA-1
chr4_1 CDS 62873221 62874193 62873221 ID=Msa0562750-mRNA-1:cds;Parent=Msa0562750-mRNA-1
chr4_1 three_prime_UTR 62872905 62873220 62872905 ID=Msa0562750-mRNA-1:three_prime_utr;Parent=Msa0562750-mRNA-1
Gene Sequence

>Msa0562750

ATGGCAACCCTTTTCCAAGGATTGGGAGCTGTTACCTCCAATTCCTTTGATTCCAACAAGCTACTCCTTTCTTCTCGTAGATCCCTTAAAGAGAGGAAAGGAAACATTTTTGTTGTCAGATCTGATGCAAAGGTGAGCAAGACTTTGAAGACTGGTGCAGCTCGTAAGAGTGAATTGTTGATTCCTAATGCAGTTGCAACACAGGAAAGTAGTTCCGCGACTTCTGCAGCATCGAAACCTGGGCATGAACTTCTCCTTTTTGAAGCCCTGCGTGAAGGATTGGAAGAAGAAATGGAAAGGGATCCTTGTGTTTGTGTCATGGGTGAAGATGTAGGTCATTATGGAGGATCTTACAAGGTGACTAGAAACCTAGCTGAAAAGTTTGGCGACCTCAGAGTTTTGGACACCCCTATTGCTGAGAATGCCTTCACTGGAATGGGTATTGGAGCTGCCATGACTGGTCTGAGGCCAATCATCGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAAATCTCTAACAATTGTGGAATGCTGCATTATACGTCTGGAGGTCAGTTTAAAATACCAGTTGTCATTCGTGGGCCCGGTGGAGTTGGTCGGCAACTTGGAGCAGAACACTCGCAGCGTCTGGAGTCATATTTTCAATCAATCCCTGGCATTCAGATGGTCGCTTGTTCAACACCTTATAACGCGAAGGGCTTGATGAAAGCTGCAATTCGAAGCGACAACCCTGTGATTCTTTTTGAGCATGTTTTGCTTTATAACCTTAAGGAAAGAATCCCAGATGAAGAGTATGTACTGTCACTTGAAGAAGCTGAGATGGTTAGGCCCGGGGAGCATGTTACAATATTAACATATTCCAGGATGAGGTATCATGTCATGCAAGCTGCCAAGACATTGGTGAACAAGGGGTATGACCCTGAAGTGATTGATATCAGGTCTTTGAAACCATTTGATCTTCACACAATTGGGAATTCAATAAAGAAGACACATCGGGTTCTCATAGTGGAGGAGTGCATGCGGACGGGTGGAATTGGTGCTAGTTTGACGGCTGCCATTACTGAAAATTTCCATGACTATTTGGATGCTCCTATCATATGTTTATCCTCTCAGGATGTGCCGACTCCATATGCCGGAACATTGGAGGAATGGACAGTGGTCCAACCTGCTCAAATTGTGACTGCAGTTGAGCAGCTCTGCCAGTGA
Protein sequence

>Msa0562750

MATLFQGLGAVTSNSFDSNKLLLSSRRSLKERKGNIFVVRSDAKVSKTLKTGAARKSELLIPNAVATQESSSATSAASKPGHELLLFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTRNLAEKFGDLRVLDTPIAENAFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIICLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ*