AlfalfaGEDB | Msa0616860

M. sativa cultivar zhongmu-4 / Msa0616860

KEGG: K00162
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004738 GO:0004739 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009856 GO:0009941 GO:0009987 GO:0010240 GO:0016053 GO:0016491 GO:0016624 GO:0016903 GO:0019752 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045254 GO:0046394 GO:0046872 GO:0046914 GO:0048856 GO:0048868 GO:0051704 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1902494 GO:1990204
PFAM: PF02779.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616860	XP_039684813.1	98.515	404	6	0	1	404	1	404	0.0	826

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616860	sp\|O64688\|ODPB3_ARATH	83.824	408	60	2	1	404	1	406	0.0	711

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0562750	Msa0616860	0.977514	6.224749e-144	-8.615850e-47
Msa0616660	Msa0616860	0.829995	3.767931e-55	-8.615850e-47
Msa0616750	Msa0616860	0.937692	2.290169e-98	-8.615850e-47
Msa0616860	Msa1051850	-0.806832	6.791716e-50	-8.615850e-47
Msa0616860	Msa1238840	-0.805912	1.061483e-49	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616860	MtrunA17_Chr8g0376411	98.515	404	6	0	1	404	1	404	0.0	826
Msa0616860	MtrunA17_Chr3g0116801	90.338	414	19	6	1	404	1	403	0.0	732
Msa0616860	MtrunA17_Chr7g0214101	39.776	357	204	2	52	404	3	352	4.60e-89	273
Msa0616860	MtrunA17_Chr4g0009631	37.143	315	186	5	75	379	29	341	4.45e-60	199

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616860	AT2G34590.1	83.824	408	60	2	1	404	1	406	0.0	711
Msa0616860	AT1G30120.1	82.238	411	61	5	1	404	1	406	0.0	692
Msa0616860	AT5G50850.1	40.979	327	189	1	81	403	33	359	7.37e-89	273
Msa0616860	AT1G55510.1	37.500	312	192	3	70	379	18	328	4.26e-62	204
Msa0616860	AT3G13450.1	37.419	310	191	3	72	379	26	334	1.73e-61	202

Showing 1 to 5 of 5 entries

Previous1Next

Find 152 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCGCAACCTTACAT+TGG	0.591863	4_2:+67120396	Msa0616860:three_prime_UTR
AAAAGAGTGTGAATTTATTT+GGG	0.301704	4_2:-67117121	None:intergenic
AAAATACCAGTTGTCATTCG+TGG	0.488255	4_2:+67119630	Msa0616860:CDS
AAAATTGGACGGAGAAATTA+AGG	0.304278	4_2:-67117098	None:intergenic
AAATACCAGTTGTCATTCGT+GGG	0.533477	4_2:+67119631	Msa0616860:CDS
AACATTGGAGGAATGGACAG+TGG	0.695713	4_2:+67120208	Msa0616860:CDS
AACCAAATCTCTAACAATTG+TGG	0.513777	4_2:+67119576	Msa0616860:CDS
AAGAAGAAGAATGGAAATGA+AGG	0.435118	4_2:-67117153	None:intergenic
AAGCGACCATCTGAATGCCA+GGG	0.661617	4_2:-67119722	None:intergenic
AAGCTGAGATGGTTAGGCCC+GGG	0.538253	4_2:+67119883	Msa0616860:CDS

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATTAAGACAAAGACTAAAG+AGG	+	chr4_2:67116840-67116859	Msa0616860:five_prime_UTR	30.0%
AAAATTGGACGGAGAAATTA+AGG	-	chr4_2:67117101-67117120	None:intergenic	30.0%
AAGAAGAAGAATGGAAATGA+AGG	-	chr4_2:67117156-67117175	None:intergenic	30.0%
ACAACATCAAATGTTTGTAG+GGG	-	chr4_2:67117671-67117690	None:intergenic	30.0%
GAACAACATCAAATGTTTGT+AGG	-	chr4_2:67117673-67117692	None:intergenic	30.0%
CTTCAATTAAGAATGACTTC+AGG	+	chr4_2:67117944-67117963	Msa0616860:intron	30.0%
TCAAAACTCCCAATATGATA+CGG	+	chr4_2:67118068-67118087	Msa0616860:intron	30.0%
AGTACTAATGATGTTCTCTT+TGG	-	chr4_2:67118272-67118291	None:intergenic	30.0%
GATGTTGAGATTGAGTTAAT+CGG	+	chr4_2:67118499-67118518	Msa0616860:intron	30.0%
GAAAAAGGAAAAAATGTGCA+CGG	-	chr4_2:67119098-67119117	None:intergenic	30.0%

Showing 1 to 10 of 265 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	67116824	67120598	67116824	ID=Msa0616860;Name=Msa0616860
chr4_2	mRNA	67116824	67120598	67116824	ID=Msa0616860-mRNA-1;Parent=Msa0616860;Name=Msa0616860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=368\|1\|1\|1\|1\|1\|4\|321\|404
chr4_2	exon	67116824	67117282	67116824	ID=Msa0616860-mRNA-1:exon:19109;Parent=Msa0616860-mRNA-1
chr4_2	exon	67117407	67117513	67117407	ID=Msa0616860-mRNA-1:exon:19110;Parent=Msa0616860-mRNA-1
chr4_2	exon	67117615	67117658	67117615	ID=Msa0616860-mRNA-1:exon:19111;Parent=Msa0616860-mRNA-1
chr4_2	exon	67119305	67120598	67119305	ID=Msa0616860-mRNA-1:exon:19112;Parent=Msa0616860-mRNA-1
chr4_2	five_prime_UTR	67116824	67117191	67116824	ID=Msa0616860-mRNA-1:five_prime_utr;Parent=Msa0616860-mRNA-1
chr4_2	CDS	67117192	67117282	67117192	ID=Msa0616860-mRNA-1:cds;Parent=Msa0616860-mRNA-1
chr4_2	CDS	67117407	67117513	67117407	ID=Msa0616860-mRNA-1:cds;Parent=Msa0616860-mRNA-1
chr4_2	CDS	67117615	67117658	67117615	ID=Msa0616860-mRNA-1:cds;Parent=Msa0616860-mRNA-1
chr4_2	CDS	67119305	67120277	67119305	ID=Msa0616860-mRNA-1:cds;Parent=Msa0616860-mRNA-1
chr4_2	three_prime_UTR	67120278	67120598	67120278	ID=Msa0616860-mRNA-1:three_prime_utr;Parent=Msa0616860-mRNA-1

Gene Sequence

>Msa0616860

ATGGCAACCCTTTTCCAAGGATTAGGAGCTGTTACCTCCAATTCCTTTGATTCCAACAAGCTACTTCTTTCTTCTCGTAGATCCCTTAAAGAGAGGAAAGGAAACATTTTTGTTGTCAGATCTGATGCAAAGGTGAGCAAGACTTTGAAGACTGGTGCAGCTCGTAAGAGTGAATTGTTGATTCCTAATGCAGTTGCAACACAGGAAAGTAGTTCCGCGACTTCTGCAGCATCGAAACCTGGGCATGAACTTCTCCTTTTTGAAGCCCTGCGTGAAGGATTGGAAGAAGAAATGGAAAGGGATCCTTGTGTTTGTGTCATGGGTGAAGATGTAGGTCATTATGGAGGATCTTACAAGGTGACTAGAAACCTAGCTGAAAAGTTTGGCGACCTCAGAGTTTTGGACACCCCTATTGCTGAGAATGCCTTCACTGGAATGGGTATTGGAGCTGCCATGACTGGTCTGAGGCCAATCATCGAGGGCATGAACATGGGATTTCTACTTCTGGCATTTAACCAAATCTCTAACAATTGTGGAATGCTGCATTATACGTCTGGAGGTCAGTTTAAAATACCAGTTGTCATTCGTGGGCCCGGTGGAGTTGGTCGGCAACTTGGAGCAGAACACTCGCAGCGTCTGGAGTCATATTTTCAATCAATCCCTGGCATTCAGATGGTCGCTTGTTCAACACCTTATAACGCGAAGGGCTTGATGAAAGCTGCAATTCGAAGCGACAACCCTGTGATTCTTTTTGAGCATGTTTTGCTTTATAACCTTAAGGAAAGAATCCCAGATGAAGAGTATGTACTGTCACTTGAAGAAGCTGAGATGGTTAGGCCCGGGGAGCATGTTACAATATTAACATATTCCAGGATGAGGTATCATGTCATGCAAGCTGCCAAGACATTGGTGAACAAGGGGTATGACCCTGAAGTGATTGATATCAGGTCTTTGAAACCATTTGATCTTCACACAATTGGGAATTCAATAAAGAAGACACATCGGGTTCTCATAGTGGAGGAGTGCATGCGGACGGGTGGAATTGGTGCTAGTTTGACGGCTGCCATTACTGAAAATTTCCATGACTATTTGGATGCTCCTATCATATGTTTATCCTCTCAGGATGTGCCGACTCCATATGCCGGAACATTGGAGGAATGGACAGTGGTCCAACCTGCTCAAATTGTGACTGCAGTTGAGCAGCTCTGCCAGTGA

Protein sequence

>Msa0616860

MATLFQGLGAVTSNSFDSNKLLLSSRRSLKERKGNIFVVRSDAKVSKTLKTGAARKSELLIPNAVATQESSSATSAASKPGHELLLFEALREGLEEEMERDPCVCVMGEDVGHYGGSYKVTRNLAEKFGDLRVLDTPIAENAFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIICLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ*