AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616770 MtrunA17_Chr8g0376431 81.818 308 9 2 1 261 1 308 1.43e-176 490
Msa0616770 MtrunA17_Chr2g0312931 73.052 308 36 2 1 261 1 308 2.67e-150 424
Msa0616770 MtrunA17_Chr8g0376451 67.869 305 51 2 4 261 3 307 1.27e-146 414
Msa0616770 MtrunA17_Chr8g0376481 70.627 303 44 2 4 261 59 361 7.08e-144 409
Msa0616770 MtrunA17_Chr8g0376471 66.997 303 55 2 4 261 3 305 4.71e-137 390
Msa0616770 MtrunA17_Chr8g0376491 66.997 303 56 3 3 261 2 304 8.16e-133 379
Msa0616770 MtrunA17_Chr8g0376461 58.781 279 64 4 4 261 3 251 4.33e-111 322
Msa0616770 MtrunA17_Chr8g0376521 77.536 138 17 1 4 127 3 140 7.64e-65 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616770 AT4G18360.2 73.941 307 33 2 4 263 3 309 1.96e-158 443
Msa0616770 AT4G18360.1 74.098 305 32 2 4 261 3 307 2.40e-156 439
Msa0616770 AT4G18360.4 74.098 305 32 2 4 261 3 307 2.40e-156 439
Msa0616770 AT3G14420.1 72.787 305 36 2 4 261 3 307 2.17e-149 422
Msa0616770 AT3G14420.2 72.787 305 36 2 4 261 3 307 2.17e-149 422
Msa0616770 AT3G14420.3 72.787 305 36 2 4 261 3 307 5.50e-149 421
Msa0616770 AT3G14415.1 70.492 305 43 2 4 261 3 307 1.01e-144 410
Msa0616770 AT3G14415.3 70.492 305 43 2 4 261 3 307 1.01e-144 410
Msa0616770 AT3G14415.2 69.132 311 43 2 4 261 3 313 4.64e-144 409
Msa0616770 AT3G14420.4 72.222 288 33 2 21 261 1 288 2.14e-138 393
Msa0616770 AT3G14420.5 70.115 261 31 2 48 261 40 300 3.38e-116 337
Msa0616770 AT3G14420.6 70.115 261 31 2 48 261 46 306 1.48e-115 336
Msa0616770 AT3G14130.3 56.494 308 84 3 1 261 1 305 6.97e-109 319
Msa0616770 AT3G14130.1 56.494 308 84 3 1 261 1 305 6.97e-109 319
Msa0616770 AT4G18360.3 68.750 240 28 2 4 196 3 242 7.40e-109 315
Msa0616770 AT3G14150.2 55.844 308 86 3 1 261 1 305 3.13e-107 315
Msa0616770 AT3G14150.1 55.844 308 86 3 1 261 1 305 3.13e-107 315
Msa0616770 AT3G14130.4 55.939 261 65 3 48 261 4 261 1.41e-85 258
Msa0616770 AT3G14130.2 60.556 180 47 2 103 261 21 197 2.22e-64 202
Msa0616770 AT3G14150.7 59.444 180 49 2 103 261 21 197 2.75e-63 199
Msa0616770 AT3G14150.5 59.444 180 49 2 103 261 21 197 2.75e-63 199
Msa0616770 AT3G14150.4 56.995 193 59 2 90 261 30 219 4.29e-63 199
Msa0616770 AT3G14150.3 56.995 193 59 2 90 261 30 219 4.29e-63 199
Msa0616770 AT3G14150.6 56.995 193 59 2 90 261 30 219 4.29e-63 199

Find 76 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCTAAATTAATATAAA+TGG 0.189532 4_2:-66902979 None:intergenic
GGATTTAAAATTAATAAAAT+TGG 0.195253 4_2:-66902866 Msa0616770:five_prime_UTR
GGTTCAGGCCGCGAATTCTT+AGG 0.233661 4_2:-66901947 Msa0616770:CDS
ATATGTCATACTATATTATT+AGG 0.247038 4_2:+66902730 None:intergenic
AACTATTAAATGTGTCAATT+TGG 0.251745 4_2:+66902810 None:intergenic
AGTACACCCTTCACTAAAAT+TGG 0.271781 4_2:+66900311 None:intergenic
ATTGACACATTTAATAGTTA+AGG 0.323400 4_2:-66902806 Msa0616770:five_prime_UTR
TCCTCTTCCGTTTACTTAGT+TGG 0.323758 4_2:+66902842 None:intergenic
GATTTGACAACAACTGTATT+AGG 0.324539 4_2:-66901909 Msa0616770:CDS
ACCGTGGACACTCCAATTCT+TGG 0.348764 4_2:-66900817 Msa0616770:CDS
TTGACACATTTAATAGTTAA+GGG 0.362706 4_2:-66902805 Msa0616770:five_prime_UTR
GCTAGGGCAGCATCGGCAGC+TGG 0.373483 4_2:-66901524 Msa0616770:CDS
TCTAAAGCCACAATAGTTGC+AGG 0.374291 4_2:+66900091 None:intergenic
GCTATAGAAGCTGGAGCTGC+TGG 0.383538 4_2:-66900157 Msa0616770:CDS
GCCTCCCTGCGACCAAGAAT+TGG 0.385667 4_2:+66900805 None:intergenic
AACTTTGAAGGGTTGGAACT+TGG 0.396001 4_2:-66900643 Msa0616770:CDS
AGCTGAATCTGCCGGTTTCA+AGG 0.404696 4_2:-66900851 Msa0616770:CDS
CCTTATTACAGGATCTGAAA+TGG 0.414987 4_2:-66900355 Msa0616770:intron
AAATTAAATTTCAGATACTT+AGG 0.415107 4_2:-66902939 Msa0616770:five_prime_UTR
GTAAACGGAAGAGGACTTAC+AGG 0.416434 4_2:-66902834 Msa0616770:five_prime_UTR
GCACTAGCTCTCGGAGCATC+TGG 0.418452 4_2:-66899427 Msa0616770:CDS
GTTTACGACTACTTTGCATC+AGG 0.436977 4_2:-66902111 Msa0616770:CDS
GAATCCTGGAGAATGCATTT+CGG 0.451918 4_2:+66902058 None:intergenic
AATTGGACCAACTAAGTAAA+CGG 0.452877 4_2:-66902849 Msa0616770:five_prime_UTR
AAAGTAGTCGTAAACCATCT+TGG 0.456025 4_2:+66902119 None:intergenic
GTTCAGGCCGCGAATTCTTA+GGG 0.458882 4_2:-66901946 Msa0616770:CDS
AAGTAGTCGTAAACCATCTT+GGG 0.463251 4_2:+66902120 None:intergenic
GCAAAATTAGCTATAGAAGC+TGG 0.465706 4_2:-66900166 Msa0616770:CDS
GGAACTTGGAAAGCTTGATA+AGG 0.472483 4_2:-66900629 Msa0616770:intron
AAGTTGGCGAGCACCGTGAT+TGG 0.478848 4_2:+66900123 None:intergenic
AAGCGCAATTGCCTTGAAAC+CGG 0.481581 4_2:+66900840 None:intergenic
TTCAGATACTTAGGTGTTGG+TGG 0.486129 4_2:-66902930 Msa0616770:five_prime_UTR
CATCAGGGGCAGAAGATCAA+TGG 0.490128 4_2:-66902095 Msa0616770:CDS
AAAGTAAAACAAAGTAATAG+AGG 0.493312 4_2:+66902643 None:intergenic
ACACTCCAATTCTTGGTCGC+AGG 0.498986 4_2:-66900810 Msa0616770:CDS
GTAGGGAGATTACAGAATCC+TGG 0.500080 4_2:+66902044 None:intergenic
CTATGTCCCTGCAACTATTG+TGG 0.500746 4_2:-66900098 Msa0616770:CDS
CTTACATCCCTAAGAATTCG+CGG 0.501659 4_2:+66901939 None:intergenic
AAATCCCTACCGTTGGATCA+AGG 0.510041 4_2:+66902883 None:intergenic
TCCTACAGCCATGCAAAAGA+TGG 0.512015 4_2:-66901856 Msa0616770:CDS
AATTTCAGATACTTAGGTGT+TGG 0.513260 4_2:-66902933 Msa0616770:five_prime_UTR
TCTCATCCTCTTCAATTCAA+AGG 0.515185 4_2:-66902603 Msa0616770:intron
TGCTACTGCTAGGGCAGCAT+CGG 0.520670 4_2:-66901531 Msa0616770:CDS
GGAATCATCGTTTCCAATCA+CGG 0.537797 4_2:-66900136 Msa0616770:CDS
GTGAAAAGAGCTGAATCTGC+CGG 0.538214 4_2:-66900859 Msa0616770:CDS
CACTCCAATTCTTGGTCGCA+GGG 0.540275 4_2:-66900809 Msa0616770:CDS
GCTGTAGGAGCAATCATGAT+AGG 0.541426 4_2:+66901870 None:intergenic
ACTTAGGTGTTGGTGGTACA+TGG 0.549649 4_2:-66902923 Msa0616770:five_prime_UTR
TAGGAGAATATGCTACTGCT+AGG 0.554020 4_2:-66901541 Msa0616770:CDS
CACGCACCTTTGAATTGAAG+AGG 0.554865 4_2:+66902597 None:intergenic
AGAACCGAAATGCATTCTCC+AGG 0.555725 4_2:-66902062 Msa0616770:CDS
AACTATTGTGGCTTTAGAAG+AGG 0.557521 4_2:-66900086 Msa0616770:intron
ATCGGCAGCTGGCACAATCA+TGG 0.565135 4_2:-66901513 Msa0616770:intron
TTGCAGGGACATAGTCAAGT+TGG 0.565500 4_2:+66900107 None:intergenic
CTGGATGGTGGAGTCCGTCG+AGG 0.576743 4_2:-66899466 Msa0616770:CDS
ACCAACTAAGTAAACGGAAG+AGG 0.579075 4_2:-66902843 Msa0616770:five_prime_UTR
ACCAAGAATTGGAGTGTCCA+CGG 0.579879 4_2:+66900816 None:intergenic
ATAAGTTAAGGGACCTGGTG+GGG 0.587740 4_2:-66902763 Msa0616770:five_prime_UTR
TTTACGACTACTTTGCATCA+GGG 0.594659 4_2:-66902110 Msa0616770:CDS
TGGATGGTGGAGTCCGTCGA+GGG 0.595561 4_2:-66899465 Msa0616770:CDS
CAAAAGATGGCTCACCCCGA+AGG 0.599659 4_2:-66901843 Msa0616770:intron
AACTTCCTTGATCCAACGGT+AGG 0.603779 4_2:-66902888 Msa0616770:five_prime_UTR
GATGAACTTCCTTGATCCAA+CGG 0.607698 4_2:-66902892 Msa0616770:five_prime_UTR
TGAAAACATCTGTCCCTCGA+CGG 0.615691 4_2:+66899452 None:intergenic
CAAGGCAATTGCGCTTACCG+TGG 0.619479 4_2:-66900833 Msa0616770:CDS
TTACGACTACTTTGCATCAG+GGG 0.621680 4_2:-66902109 Msa0616770:CDS
AATAAGTTAAGGGACCTGGT+GGG 0.623571 4_2:-66902764 Msa0616770:five_prime_UTR
ACTTCCTTGATCCAACGGTA+GGG 0.623824 4_2:-66902887 Msa0616770:five_prime_UTR
TAGGTTGTGAAAGCAACAGA+AGG 0.625004 4_2:-66899505 Msa0616770:CDS
GGTGATTAAAGACAGAAATG+TGG 0.634813 4_2:-66900893 Msa0616770:CDS
AGGAGAATATGCTACTGCTA+GGG 0.637495 4_2:-66901540 Msa0616770:CDS
AAATAAGTTAAGGGACCTGG+TGG 0.640359 4_2:-66902765 Msa0616770:five_prime_UTR
CTAAAGCCACAATAGTTGCA+GGG 0.641853 4_2:+66900092 None:intergenic
AGGCTTAATACATCCCCACC+AGG 0.664685 4_2:+66902750 None:intergenic
TCCAATTCTTGGTCGCAGGG+AGG 0.688058 4_2:-66900806 Msa0616770:CDS
CGACATTATACATACCTTCG+GGG 0.719344 4_2:+66901829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTAAAATTAATAAAAT+TGG - chr4_2:66899517-66899536 Msa0616770:intron 10.0%
!! ATTTGCATATATATTTATAT+TGG - chr4_2:66899859-66899878 Msa0616770:intron 10.0%
!! GTAATTAATAATTAATACTA+TGG - chr4_2:66902001-66902020 Msa0616770:intron 10.0%
!!! AATTTGTTAATAAATTTTAG+AGG + chr4_2:66902723-66902742 None:intergenic 10.0%
!!! TCTAAAATTTATTAACAAAT+TGG - chr4_2:66902722-66902741 Msa0616770:five_prime_UTR 10.0%
!! AAATTAAATTTCAGATACTT+AGG - chr4_2:66899444-66899463 Msa0616770:CDS 15.0%
!! ATATGTCATACTATATTATT+AGG + chr4_2:66899656-66899675 None:intergenic 15.0%
!! AAAACAAAAATATTGAAAAC+AGG + chr4_2:66900407-66900426 None:intergenic 15.0%
!! ACAAATGAAATAAAAAATGA+GGG + chr4_2:66901089-66901108 None:intergenic 15.0%
!! TACAAATGAAATAAAAAATG+AGG + chr4_2:66901090-66901109 None:intergenic 15.0%
!! AAAGATCATAATGTTTAATA+AGG - chr4_2:66901314-66901333 Msa0616770:intron 15.0%
!! TATGAAATTAAGAAATCATA+TGG - chr4_2:66901788-66901807 Msa0616770:intron 15.0%
!!! TTAAAATGAAAATTTTGTGT+AGG + chr4_2:66902343-66902362 None:intergenic 15.0%
!!! TTTCTATTTGAAGTAAAAAA+GGG + chr4_2:66902427-66902446 None:intergenic 15.0%
!!! TTTTACTTTTAACTATTGAA+TGG - chr4_2:66902823-66902842 Msa0616770:five_prime_UTR 15.0%
!! AACTATTAAATGTGTCAATT+TGG + chr4_2:66899576-66899595 None:intergenic 20.0%
!! ATTGACACATTTAATAGTTA+AGG - chr4_2:66899577-66899596 Msa0616770:intron 20.0%
!! TTGACACATTTAATAGTTAA+GGG - chr4_2:66899578-66899597 Msa0616770:intron 20.0%
!! TGAGAAGAAAAAATAAGTTA+AGG - chr4_2:66899608-66899627 Msa0616770:intron 20.0%
!! GAGAAGAAAAAATAAGTTAA+GGG - chr4_2:66899609-66899628 Msa0616770:intron 20.0%
!! AAAGTAAAACAAAGTAATAG+AGG + chr4_2:66899743-66899762 None:intergenic 20.0%
!! AAACGGAAATAAAAGTAAAA+GGG + chr4_2:66899814-66899833 None:intergenic 20.0%
!! AAAACGGAAATAAAAGTAAA+AGG + chr4_2:66899815-66899834 None:intergenic 20.0%
!! ATTAAGCAAGAAGAATAAAA+CGG + chr4_2:66899831-66899850 None:intergenic 20.0%
!! AAATATATATGCAAATAACG+TGG + chr4_2:66899855-66899874 None:intergenic 20.0%
!!! GATTGATAATTTGATATACA+CGG - chr4_2:66900082-66900101 Msa0616770:intron 20.0%
!! TCAAATAAAAGAAGTTTGTA+GGG + chr4_2:66900359-66900378 None:intergenic 20.0%
!! ATCAAATAAAAGAAGTTTGT+AGG + chr4_2:66900360-66900379 None:intergenic 20.0%
!!! TATTTTTGTTTTGTGAAAAC+AGG - chr4_2:66900415-66900434 Msa0616770:intron 20.0%
!! GTACATGATAAAAAAACAAT+CGG + chr4_2:66900725-66900744 None:intergenic 20.0%
!! TGTTTGTCAATTTAACAATA+AGG + chr4_2:66901145-66901164 None:intergenic 20.0%
!! CATGAGAATAAAATTCTAAA+CGG + chr4_2:66901392-66901411 None:intergenic 20.0%
!! TTGTATTGAAAAACTTTGAA+GGG - chr4_2:66901729-66901748 Msa0616770:intron 20.0%
!!! GTTTCTATTTGAAGTAAAAA+AGG + chr4_2:66902428-66902447 None:intergenic 20.0%
!! TCTAAGAGATTAATAAAGAT+GGG + chr4_2:66902771-66902790 None:intergenic 20.0%
!!! CTATTGAATGGATTTTATTA+AGG - chr4_2:66902835-66902854 Msa0616770:five_prime_UTR 20.0%
! CAACAACAACAATATAATAC+AGG + chr4_2:66900638-66900657 None:intergenic 25.0%
! ATTTATGTTTACTGCAATTG+AGG - chr4_2:66900782-66900801 Msa0616770:intron 25.0%
!! CAAATTATGCAATTTTGTGT+AGG - chr4_2:66900823-66900842 Msa0616770:CDS 25.0%
! TTAAACATTATGATCTTTGC+TGG + chr4_2:66901312-66901331 None:intergenic 25.0%
! TAAAATTCTAAACGGAAGTA+TGG + chr4_2:66901384-66901403 None:intergenic 25.0%
!!! GTAGTTTTTTTTCTTCTCTT+AGG - chr4_2:66901469-66901488 Msa0616770:intron 25.0%
!! CTATGTAATGTTTTGTAGAA+AGG + chr4_2:66901653-66901672 None:intergenic 25.0%
!!! CTTCAAAGTTTTTCAATACA+AGG + chr4_2:66901730-66901749 None:intergenic 25.0%
! CTTGTATTGAAAAACTTTGA+AGG - chr4_2:66901728-66901747 Msa0616770:intron 25.0%
! AATAACAAGACTATCAGTAA+TGG + chr4_2:66901820-66901839 None:intergenic 25.0%
!!! TTAGAGTGTTTGTTTTTAAC+AGG + chr4_2:66902117-66902136 None:intergenic 25.0%
! TTTAAATTGAAACTCTTACC+TGG - chr4_2:66902363-66902382 Msa0616770:intron 25.0%
!! CTCTAAGAGATTAATAAAGA+TGG + chr4_2:66902772-66902791 None:intergenic 25.0%
! TTATTAATCTCTTAGAGATG+TGG - chr4_2:66902775-66902794 Msa0616770:five_prime_UTR 25.0%
AATTTCAGATACTTAGGTGT+TGG - chr4_2:66899450-66899469 Msa0616770:CDS 30.0%
! TAATTTTAAATCCCTACCGT+TGG + chr4_2:66899510-66899529 None:intergenic 30.0%
AATTGGACCAACTAAGTAAA+CGG - chr4_2:66899534-66899553 Msa0616770:intron 30.0%
AAAAAATAAGTTAAGGGACC+TGG - chr4_2:66899615-66899634 Msa0616770:intron 30.0%
TGCAAATACATACCAGAAAT+TGG - chr4_2:66899925-66899944 Msa0616770:intron 30.0%
GCAAATACATACCAGAAATT+GGG - chr4_2:66899926-66899945 Msa0616770:intron 30.0%
CAAATACATACCAGAAATTG+GGG - chr4_2:66899927-66899946 Msa0616770:intron 30.0%
AATTATGAATCATCACAGAG+TGG + chr4_2:66900031-66900050 None:intergenic 30.0%
GATAATTTGATATACACGGT+TGG - chr4_2:66900086-66900105 Msa0616770:intron 30.0%
!!! GATTTTTTGCATAGCATCTT+TGG - chr4_2:66900115-66900134 Msa0616770:CDS 30.0%
GATTTGACAACAACTGTATT+AGG - chr4_2:66900474-66900493 Msa0616770:intron 30.0%
TGGTCTGTGTTTACATTATA+AGG - chr4_2:66900594-66900613 Msa0616770:intron 30.0%
CAATATAATACAGGAAGCAA+TGG + chr4_2:66900629-66900648 None:intergenic 30.0%
AAACAATCGGAATTCTGTAT+GGG + chr4_2:66900712-66900731 None:intergenic 30.0%
AAAACAATCGGAATTCTGTA+TGG + chr4_2:66900713-66900732 None:intergenic 30.0%
GTTTCCATCATATTTGTTCT+CGG - chr4_2:66900897-66900916 Msa0616770:intron 30.0%
TTAAGCATAACAAGTGCATT+GGG + chr4_2:66900936-66900955 None:intergenic 30.0%
ATTAAGCATAACAAGTGCAT+TGG + chr4_2:66900937-66900956 None:intergenic 30.0%
! TGTTATGCTTAATTAGCTTC+TGG - chr4_2:66900944-66900963 Msa0616770:intron 30.0%
TCTATAAGGCTATTTAGTCA+AGG + chr4_2:66901351-66901370 None:intergenic 30.0%
ATGGAGGAGATTATTCTATA+AGG + chr4_2:66901365-66901384 None:intergenic 30.0%
AATAGACTAAGTAGTTGACA+AGG + chr4_2:66901449-66901468 None:intergenic 30.0%
!! TTTTTCAATACAAGGTGTGA+TGG + chr4_2:66901722-66901741 None:intergenic 30.0%
! ATTGAAAAACTTTGAAGGGT+TGG - chr4_2:66901733-66901752 Msa0616770:intron 30.0%
ACTATGGTAAACCTTATTAC+AGG - chr4_2:66902017-66902036 Msa0616770:intron 30.0%
!! TTCATTGCCAATTTTAGTGA+AGG - chr4_2:66902065-66902084 Msa0616770:CDS 30.0%
!! TCATTGCCAATTTTAGTGAA+GGG - chr4_2:66902066-66902085 Msa0616770:CDS 30.0%
ATGTCCATTTGATATCTGTT+GGG - chr4_2:66902143-66902162 Msa0616770:CDS 30.0%
AATTCCCAACAGATATCAAA+TGG + chr4_2:66902150-66902169 None:intergenic 30.0%
! AACGACTGTTTTATAGCAAT+TGG - chr4_2:66902396-66902415 Msa0616770:intron 30.0%
AGACATATGAGTAAGAAACA+AGG + chr4_2:66902651-66902670 None:intergenic 30.0%
TTTAGAGGACATTATTCACT+AGG + chr4_2:66902708-66902727 None:intergenic 30.0%
!! TTTTGTTGCTTGTCTTGAAT+AGG - chr4_2:66902859-66902878 Msa0616770:five_prime_UTR 30.0%
!! AGGAAAAATTCCTGTTTTTC+TGG - chr4_2:66902898-66902917 Msa0616770:five_prime_UTR 30.0%
!! AAAATTCCTGTTTTTCTGGA+TGG - chr4_2:66902902-66902921 Msa0616770:five_prime_UTR 30.0%
GCAAAAACAAAACAGAGTAC+GGG + chr4_2:66899721-66899740 None:intergenic 35.0%
GGCAAAAACAAAACAGAGTA+CGG + chr4_2:66899722-66899741 None:intergenic 35.0%
TCTCATCCTCTTCAATTCAA+AGG - chr4_2:66899780-66899799 Msa0616770:intron 35.0%
AAATGTGAAACCCCAATTTC+TGG + chr4_2:66899940-66899959 None:intergenic 35.0%
!! TTGCATAGCATCTTTGGTTT+TGG - chr4_2:66900121-66900140 Msa0616770:CDS 35.0%
!!! ATAGCATCTTTGGTTTTGGA+GGG - chr4_2:66900125-66900144 Msa0616770:CDS 35.0%
TTATCAAATCCATCTTCCTG+AGG + chr4_2:66900202-66900221 None:intergenic 35.0%
AAGTAGTCGTAAACCATCTT+GGG + chr4_2:66900266-66900285 None:intergenic 35.0%
AAAGTAGTCGTAAACCATCT+TGG + chr4_2:66900267-66900286 None:intergenic 35.0%
TTTACGACTACTTTGCATCA+GGG - chr4_2:66900273-66900292 Msa0616770:intron 35.0%
! TGTTTTGTGAAAACAGGTTC+AGG - chr4_2:66900421-66900440 Msa0616770:intron 35.0%
ACGACATTATACATACCTTC+GGG + chr4_2:66900558-66900577 None:intergenic 35.0%
GACGACATTATACATACCTT+CGG + chr4_2:66900559-66900578 None:intergenic 35.0%
AAAGCCGAGAACAAATATGA+TGG + chr4_2:66900904-66900923 None:intergenic 35.0%
!!! GTTTTTTCCAACTCTATGTG+AGG - chr4_2:66901057-66901076 Msa0616770:intron 35.0%
GTAATATCCTCACATAGAGT+TGG + chr4_2:66901067-66901086 None:intergenic 35.0%
ATTGCGACAAACACATCAAA+GGG + chr4_2:66901118-66901137 None:intergenic 35.0%
ATTTCTGTGATGCTTGTAAC+AGG - chr4_2:66901165-66901184 Msa0616770:intron 35.0%
!!! TGTTTTAGTGTCGTAGTACT+AGG - chr4_2:66901249-66901268 Msa0616770:intron 35.0%
TCTTTGCTGGTATAAATTGC+AGG + chr4_2:66901299-66901318 None:intergenic 35.0%
! AATTCTAAACGGAAGTATGG+AGG + chr4_2:66901381-66901400 None:intergenic 35.0%
GGTGATTAAAGACAGAAATG+TGG - chr4_2:66901490-66901509 Msa0616770:intron 35.0%
AATTTCGCCAGAAACATAAG+AGG + chr4_2:66901898-66901917 None:intergenic 35.0%
ATGCAATATTTACACAGGCA+AGG + chr4_2:66901975-66901994 None:intergenic 35.0%
TGCCTGTGTAAATATTGCAT+AGG - chr4_2:66901975-66901994 Msa0616770:intron 35.0%
GCCTGTGTAAATATTGCATA+GGG - chr4_2:66901976-66901995 Msa0616770:intron 35.0%
TCCCTATGCAATATTTACAC+AGG + chr4_2:66901980-66901999 None:intergenic 35.0%
CCATTTCAGATCCTGTAATA+AGG + chr4_2:66902031-66902050 None:intergenic 35.0%
CCTTATTACAGGATCTGAAA+TGG - chr4_2:66902028-66902047 Msa0616770:intron 35.0%
AGTACACCCTTCACTAAAAT+TGG + chr4_2:66902075-66902094 None:intergenic 35.0%
CATGTCCATTTGATATCTGT+TGG - chr4_2:66902142-66902161 Msa0616770:CDS 35.0%
GCAAAATTAGCTATAGAAGC+TGG - chr4_2:66902217-66902236 Msa0616770:intron 35.0%
!! AACTATTGTGGCTTTAGAAG+AGG - chr4_2:66902297-66902316 Msa0616770:intron 35.0%
TATAAAACAGTCGTTGTGGT+AGG + chr4_2:66902391-66902410 None:intergenic 35.0%
TTGCTATAAAACAGTCGTTG+TGG + chr4_2:66902395-66902414 None:intergenic 35.0%
TCTTCTTCACACTGTAGTTT+AGG - chr4_2:66902453-66902472 Msa0616770:intron 35.0%
CAGTCAAGAAAGAAGAAATG+AGG + chr4_2:66902480-66902499 None:intergenic 35.0%
CATTTCTTCTTTCTTGACTG+TGG - chr4_2:66902480-66902499 Msa0616770:intron 35.0%
ACTAGGATCATAAACTGAAG+AGG + chr4_2:66902691-66902710 None:intergenic 35.0%
!! TTCAGATACTTAGGTGTTGG+TGG - chr4_2:66899453-66899472 Msa0616770:CDS 40.0%
GATGAACTTCCTTGATCCAA+CGG - chr4_2:66899491-66899510 Msa0616770:CDS 40.0%
ACCAACTAAGTAAACGGAAG+AGG - chr4_2:66899540-66899559 Msa0616770:intron 40.0%
TCCTCTTCCGTTTACTTAGT+TGG + chr4_2:66899544-66899563 None:intergenic 40.0%
AAATAAGTTAAGGGACCTGG+TGG - chr4_2:66899618-66899637 Msa0616770:intron 40.0%
AATAAGTTAAGGGACCTGGT+GGG - chr4_2:66899619-66899638 Msa0616770:intron 40.0%
!!! CATAGCATCTTTGGTTTTGG+AGG - chr4_2:66900124-66900143 Msa0616770:CDS 40.0%
! CATTGTATTTTACGCTCCTC+AGG - chr4_2:66900183-66900202 Msa0616770:intron 40.0%
! GGCAATTTTTGCTTGGCAAT+TGG + chr4_2:66900245-66900264 None:intergenic 40.0%
! CATCTTGGGCAATTTTTGCT+TGG + chr4_2:66900252-66900271 None:intergenic 40.0%
CAAGCAAAAATTGCCCAAGA+TGG - chr4_2:66900250-66900269 Msa0616770:intron 40.0%
GTTTACGACTACTTTGCATC+AGG - chr4_2:66900272-66900291 Msa0616770:intron 40.0%
TTACGACTACTTTGCATCAG+GGG - chr4_2:66900274-66900293 Msa0616770:intron 40.0%
GAATCCTGGAGAATGCATTT+CGG + chr4_2:66900328-66900347 None:intergenic 40.0%
CTTACATCCCTAAGAATTCG+CGG + chr4_2:66900447-66900466 None:intergenic 40.0%
CGACATTATACATACCTTCG+GGG + chr4_2:66900557-66900576 None:intergenic 40.0%
! TCGTCGATTATTGAACTCGT+TGG - chr4_2:66900574-66900593 Msa0616770:intron 40.0%
TAGGAGAATATGCTACTGCT+AGG - chr4_2:66900842-66900861 Msa0616770:CDS 40.0%
AGGAGAATATGCTACTGCTA+GGG - chr4_2:66900843-66900862 Msa0616770:CDS 40.0%
TGTAACAGACACTATCCTCA+TGG - chr4_2:66900988-66901007 Msa0616770:intron 40.0%
GTAACAGACACTATCCTCAT+GGG - chr4_2:66900989-66901008 Msa0616770:intron 40.0%
AGTTGGAAAAAACGAATGCC+GGG + chr4_2:66901050-66901069 None:intergenic 40.0%
GAGTTGGAAAAAACGAATGC+CGG + chr4_2:66901051-66901070 None:intergenic 40.0%
TTGCGACAAACACATCAAAG+GGG + chr4_2:66901117-66901136 None:intergenic 40.0%
CATTGCGACAAACACATCAA+AGG + chr4_2:66901119-66901138 None:intergenic 40.0%
GGGAGGCTGATATTAAAAAC+AGG - chr4_2:66901594-66901613 Msa0616770:intron 40.0%
! AACTTTGAAGGGTTGGAACT+TGG - chr4_2:66901740-66901759 Msa0616770:intron 40.0%
GGAACTTGGAAAGCTTGATA+AGG - chr4_2:66901754-66901773 Msa0616770:intron 40.0%
TCCTTGCAGACTAATGATTC+TGG - chr4_2:66901867-66901886 Msa0616770:CDS 40.0%
! ACCAGAATCATTAGTCTGCA+AGG + chr4_2:66901871-66901890 None:intergenic 40.0%
!! ATGTTTCTGGCGAAATTGAC+CGG - chr4_2:66901901-66901920 Msa0616770:CDS 40.0%
GGAATCATCGTTTCCAATCA+CGG - chr4_2:66902247-66902266 Msa0616770:intron 40.0%
CTAAAGCCACAATAGTTGCA+GGG + chr4_2:66902294-66902313 None:intergenic 40.0%
! TCTAAAGCCACAATAGTTGC+AGG + chr4_2:66902295-66902314 None:intergenic 40.0%
ACTGAAGAGGAAAAGAAGCA+GGG + chr4_2:66902678-66902697 None:intergenic 40.0%
AACTGAAGAGGAAAAGAAGC+AGG + chr4_2:66902679-66902698 None:intergenic 40.0%
TAGGTTGTGAAAGCAACAGA+AGG - chr4_2:66902878-66902897 Msa0616770:five_prime_UTR 40.0%
!! ATTCCTGTTTTTCTGGATGG+TGG - chr4_2:66902905-66902924 Msa0616770:five_prime_UTR 40.0%
!! GTTTTCAAAGCACTAGCTCT+CGG - chr4_2:66902947-66902966 Msa0616770:five_prime_UTR 40.0%
!! ACTTAGGTGTTGGTGGTACA+TGG - chr4_2:66899460-66899479 Msa0616770:CDS 45.0%
AACTTCCTTGATCCAACGGT+AGG - chr4_2:66899495-66899514 Msa0616770:CDS 45.0%
ACTTCCTTGATCCAACGGTA+GGG - chr4_2:66899496-66899515 Msa0616770:CDS 45.0%
AAATCCCTACCGTTGGATCA+AGG + chr4_2:66899503-66899522 None:intergenic 45.0%
GTAAACGGAAGAGGACTTAC+AGG - chr4_2:66899549-66899568 Msa0616770:intron 45.0%
ATAAGTTAAGGGACCTGGTG+GGG - chr4_2:66899620-66899639 Msa0616770:intron 45.0%
CACGCACCTTTGAATTGAAG+AGG + chr4_2:66899789-66899808 None:intergenic 45.0%
!!! TCTTTGGTTTTGGAGGGAAG+TGG - chr4_2:66900131-66900150 Msa0616770:CDS 45.0%
! TTTTACGCTCCTCAGGAAGA+TGG - chr4_2:66900190-66900209 Msa0616770:intron 45.0%
AGAACCGAAATGCATTCTCC+AGG - chr4_2:66900321-66900340 Msa0616770:CDS 45.0%
GTAGGGAGATTACAGAATCC+TGG + chr4_2:66900342-66900361 None:intergenic 45.0%
GCTGTAGGAGCAATCATGAT+AGG + chr4_2:66900516-66900535 None:intergenic 45.0%
TCCTACAGCCATGCAAAAGA+TGG - chr4_2:66900527-66900546 Msa0616770:intron 45.0%
AACTTCCTCAACACTGGAAG+TGG + chr4_2:66901015-66901034 None:intergenic 45.0%
TGAAGCAACTTCCTCAACAC+TGG + chr4_2:66901021-66901040 None:intergenic 45.0%
GTTGAGGAAGTTGCTTCAAC+AGG - chr4_2:66901023-66901042 Msa0616770:intron 45.0%
GTGAAAAGAGCTGAATCTGC+CGG - chr4_2:66901524-66901543 Msa0616770:CDS 45.0%
AAGCGCAATTGCCTTGAAAC+CGG + chr4_2:66901546-66901565 None:intergenic 45.0%
! ACCAAGAATTGGAGTGTCCA+CGG + chr4_2:66901570-66901589 None:intergenic 45.0%
GGTCTAGCCTCTTATGTTTC+TGG - chr4_2:66901888-66901907 Msa0616770:CDS 45.0%
AAATTGACCGGTCACTCAAC+TGG - chr4_2:66901913-66901932 Msa0616770:CDS 45.0%
TTGCAGGGACATAGTCAAGT+TGG + chr4_2:66902279-66902298 None:intergenic 45.0%
CTATGTCCCTGCAACTATTG+TGG - chr4_2:66902285-66902304 Msa0616770:intron 45.0%
CTGAAGAGGAAAAGAAGCAG+GGG + chr4_2:66902677-66902696 None:intergenic 45.0%
ACTCCACCATCCAGAAAAAC+AGG + chr4_2:66902911-66902930 None:intergenic 45.0%
TGAAAACATCTGTCCCTCGA+CGG + chr4_2:66902934-66902953 None:intergenic 45.0%
AGGCTTAATACATCCCCACC+AGG + chr4_2:66899636-66899655 None:intergenic 50.0%
CATCAGGGGCAGAAGATCAA+TGG - chr4_2:66900288-66900307 Msa0616770:intron 50.0%
GTTCAGGCCGCGAATTCTTA+GGG - chr4_2:66900437-66900456 Msa0616770:intron 50.0%
! GCCATCTTTTGCATGGCTGT+AGG + chr4_2:66900531-66900550 None:intergenic 50.0%
CAGCTGGCACAATCATGGTT+TGG - chr4_2:66900875-66900894 Msa0616770:CDS 50.0%
GAAGTTGCTTCAACAGGACC+CGG - chr4_2:66901029-66901048 Msa0616770:intron 50.0%
!! AGCTGAATCTGCCGGTTTCA+AGG - chr4_2:66901532-66901551 Msa0616770:CDS 50.0%
ACCGTGGACACTCCAATTCT+TGG - chr4_2:66901566-66901585 Msa0616770:intron 50.0%
ACACTCCAATTCTTGGTCGC+AGG - chr4_2:66901573-66901592 Msa0616770:intron 50.0%
CACTCCAATTCTTGGTCGCA+GGG - chr4_2:66901574-66901593 Msa0616770:intron 50.0%
TCACCTTCCAGTTGAGTGAC+CGG + chr4_2:66901923-66901942 None:intergenic 50.0%
CACTCAACTGGAAGGTGACT+TGG - chr4_2:66901925-66901944 Msa0616770:CDS 50.0%
GGTTCAGGCCGCGAATTCTT+AGG - chr4_2:66900436-66900455 Msa0616770:intron 55.0%
! GGGGTGAGCCATCTTTTGCA+TGG + chr4_2:66900538-66900557 None:intergenic 55.0%
CAAAAGATGGCTCACCCCGA+AGG - chr4_2:66900540-66900559 Msa0616770:intron 55.0%
TGCTACTGCTAGGGCAGCAT+CGG - chr4_2:66900852-66900871 Msa0616770:CDS 55.0%
ATCGGCAGCTGGCACAATCA+TGG - chr4_2:66900870-66900889 Msa0616770:CDS 55.0%
AACACTGGAAGTGGCCCATG+AGG + chr4_2:66901006-66901025 None:intergenic 55.0%
ATGGGCCACTTCCAGTGTTG+AGG - chr4_2:66901007-66901026 Msa0616770:intron 55.0%
CAAGGCAATTGCGCTTACCG+TGG - chr4_2:66901550-66901569 Msa0616770:intron 55.0%
TCCAATTCTTGGTCGCAGGG+AGG - chr4_2:66901577-66901596 Msa0616770:intron 55.0%
TGACCGGTCACTCAACTGGA+AGG - chr4_2:66901917-66901936 Msa0616770:CDS 55.0%
GCTATAGAAGCTGGAGCTGC+TGG - chr4_2:66902226-66902245 Msa0616770:intron 55.0%
! AAGTTGGCGAGCACCGTGAT+TGG + chr4_2:66902263-66902282 None:intergenic 55.0%
CAGTCGTTGTGGTAGGATCC+AGG + chr4_2:66902384-66902403 None:intergenic 55.0%
GCCTCCCTGCGACCAAGAAT+TGG + chr4_2:66901581-66901600 None:intergenic 60.0%
!! TGGATGGTGGAGTCCGTCGA+GGG - chr4_2:66902918-66902937 Msa0616770:five_prime_UTR 60.0%
! GCACTAGCTCTCGGAGCATC+TGG - chr4_2:66902956-66902975 Msa0616770:five_prime_UTR 60.0%
!! CTGGATGGTGGAGTCCGTCG+AGG - chr4_2:66902917-66902936 Msa0616770:five_prime_UTR 65.0%
!! GCTAGGGCAGCATCGGCAGC+TGG - chr4_2:66900859-66900878 Msa0616770:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 66899408 66902997 66899408 ID=Msa0616770;Name=Msa0616770
chr4_2 mRNA 66899408 66902997 66899408 ID=Msa0616770-mRNA-1;Parent=Msa0616770;Name=Msa0616770-mRNA-1;_AED=0.45;_eAED=0.45;_QI=398|0.87|0.88|1|0.87|0.88|9|0|263
chr4_2 exon 66899408 66899524 66899408 ID=Msa0616770-mRNA-1:exon:19087;Parent=Msa0616770-mRNA-1
chr4_2 exon 66900087 66900187 66900087 ID=Msa0616770-mRNA-1:exon:19086;Parent=Msa0616770-mRNA-1
chr4_2 exon 66900297 66900366 66900297 ID=Msa0616770-mRNA-1:exon:19085;Parent=Msa0616770-mRNA-1
chr4_2 exon 66900630 66900696 66900630 ID=Msa0616770-mRNA-1:exon:19084;Parent=Msa0616770-mRNA-1
chr4_2 exon 66900790 66900914 66900790 ID=Msa0616770-mRNA-1:exon:19083;Parent=Msa0616770-mRNA-1
chr4_2 exon 66901514 66901560 66901514 ID=Msa0616770-mRNA-1:exon:19082;Parent=Msa0616770-mRNA-1
chr4_2 exon 66901844 66901968 66901844 ID=Msa0616770-mRNA-1:exon:19081;Parent=Msa0616770-mRNA-1
chr4_2 exon 66902057 66902200 66902057 ID=Msa0616770-mRNA-1:exon:19080;Parent=Msa0616770-mRNA-1
chr4_2 exon 66902604 66902997 66902604 ID=Msa0616770-mRNA-1:exon:19079;Parent=Msa0616770-mRNA-1
chr4_2 five_prime_UTR 66902604 66902997 66902604 ID=Msa0616770-mRNA-1:five_prime_utr;Parent=Msa0616770-mRNA-1
chr4_2 five_prime_UTR 66902197 66902200 66902197 ID=Msa0616770-mRNA-1:five_prime_utr;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66902057 66902196 66902057 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66901844 66901968 66901844 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66901514 66901560 66901514 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66900790 66900914 66900790 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66900630 66900696 66900630 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66900297 66900366 66900297 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66900087 66900187 66900087 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
chr4_2 CDS 66899408 66899524 66899408 ID=Msa0616770-mRNA-1:cds;Parent=Msa0616770-mRNA-1
Gene Sequence

>Msa0616770

ATGGATTTGATAACTAATGTGAGCGAGTATGAGCCAATTGCCAAGCAAAAATTGCCCAAGATGGTTTACGACTACTTTGCATCAGGGGCAGAAGATCAATGGACTCTGCAAGAGAACCGAAATGCATTCTCCAGGATTCTGTTCAGGCCGCGAATTCTTAGGGATGTAAGCAAGATCGATTTGACAACAACTGTATTAGGCTTTAATATATCAATGCCTATCATGATTGCTCCTACAGCCATGCAAAAGATGGCTCACCCCGAAGGAGAATATGCTACTGCTAGGGCAGCATCGGCAGCTGGCACAATCATGGTGATTAAAGACAGAAATGTGGTTGCTCAGCTTGTGAAAAGAGCTGAATCTGCCGGTTTCAAGGCAATTGCGCTTACCGTGGACACTCCAATTCTTGGTCGCAGGGAGGCTGATATTAAAAACAGATTTACAATGCCATCACACCTTGTATTGAAAAACTTTGAAGGGTTGGAACTTGGAAAGCTTGATAAGGATCTGAAATGGCTTCAAACAATCACTTCATTGCCAATTTTAGTGAAGGGTGTACTTACTGCTGAAGACACAAAATTAGCTATAGAAGCTGGAGCTGCTGGAATCATCGTTTCCAATCACGGTGCTCGCCAACTTGACTATGTCCCTGCAACTATTGTGGCTTTAGAAGAGGTTGTGAAAGCAACAGAAGGAAAAATTCCTGTTTTTCTGGATGGTGGAGTCCGTCGAGGGACAGATGTTTTCAAAGCACTAGCTCTCGGAGCATCTGGTGTATTTGTAAGTACATGA

Protein sequence

>Msa0616770

MDLITNVSEYEPIAKQKLPKMVYDYFASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDLTTTVLGFNISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMVIKDRNVVAQLVKRAESAGFKAIALTVDTPILGRREADIKNRFTMPSHLVLKNFEGLELGKLDKDLKWLQTITSLPILVKGVLTAEDTKLAIEAGAAGIIVSNHGARQLDYVPATIVALEEVVKATEGKIPVFLDGGVRRGTDVFKALALGASGVFVST*