AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580850 MtrunA17_Chr4g0060261 98.375 554 8 1 1 554 1 553 0.0 1129
Msa0580850 MtrunA17_Chr3g0118121 26.885 305 189 12 188 477 144 429 1.62e-12 70.1
Msa0580850 MtrunA17_Chr4g0074171 25.143 350 224 14 58 387 22 353 1.66e-12 69.7
Msa0580850 MtrunA17_Chr4g0059221 24.775 444 283 17 54 477 66 478 1.84e-12 69.7
Msa0580850 MtrunA17_Chr3g0118081 25.658 304 194 11 188 477 174 459 3.96e-12 68.9
Msa0580850 MtrunA17_Chr1g0149961 25.836 329 209 13 58 372 22 329 4.21e-12 68.6
Msa0580850 MtrunA17_Chr8g0365221 25.061 411 271 15 55 451 64 451 1.46e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580850 AT5G62530.1 80.216 556 108 2 1 554 1 556 0.0 953
Msa0580850 AT1G23800.1 26.521 411 265 15 55 451 57 444 4.31e-13 72.4
Msa0580850 AT1G74920.1 26.557 305 190 12 188 477 144 429 8.59e-13 71.2
Msa0580850 AT1G74920.2 26.557 305 190 12 188 477 139 424 9.11e-13 71.2
Msa0580850 AT1G54100.2 23.722 489 314 25 56 520 25 478 2.43e-11 66.6
Msa0580850 AT1G54100.1 23.722 489 314 25 56 520 25 478 2.43e-11 66.6
Msa0580850 AT3G48000.1 24.318 440 288 16 55 477 61 472 2.82e-11 66.6

Find 165 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCAGTACATGGTAAA+TGG 0.102956 4_1:+86127885 Msa0580850:intron
TTACCTTGCTGTCGACTTTA+AGG 0.115406 4_1:-86130487 None:intergenic
ATAAATGGCTCTCCATTTAA+AGG 0.157199 4_1:-86127941 None:intergenic
CATTCAATTCCGCAAGTTTA+TGG 0.168990 4_1:+86132318 Msa0580850:CDS
ATTAATGGGTGCTCTTTATA+TGG 0.169166 4_1:+86130451 Msa0580850:CDS
ACCAATTGTGTTGGAGGTTT+TGG 0.172418 4_1:+86132584 Msa0580850:CDS
AGAGAAATCATTTATGATTA+TGG 0.200880 4_1:+86133380 Msa0580850:CDS
ACAATTGTGGATCCTTTAAA+TGG 0.201066 4_1:+86127929 Msa0580850:CDS
GATGGTATGTATCTGATTTC+GGG 0.233031 4_1:-86126271 None:intergenic
TTTGCAAAATACGCATAAAT+AGG 0.240558 4_1:+86126362 Msa0580850:five_prime_UTR
TACCTCTCTGGTGCCTTAAA+AGG 0.253435 4_1:-86128389 None:intergenic
AGATGGTATGTATCTGATTT+CGG 0.260030 4_1:-86126272 None:intergenic
GATTCCAGTCCTTCAATTAA+TGG 0.260381 4_1:+86130436 Msa0580850:CDS
TCTTTGGCAGGTTCGTTTCC+TGG 0.273141 4_1:+86129774 Msa0580850:intron
AGCAGGAAGAACATTGTATT+TGG 0.275476 4_1:-86126538 None:intergenic
ACTATCAAACCCGATATATA+AGG 0.279609 4_1:+86126319 Msa0580850:five_prime_UTR
GCTCTTTGGTGGAGAGCCTT+TGG 0.303385 4_1:+86132290 Msa0580850:CDS
TGTTCCAATCCCTGCACCTC+TGG 0.305752 4_1:-86133324 None:intergenic
TTTGAAGGGCCGCGTTAAAT+TGG 0.307383 4_1:+86131334 Msa0580850:CDS
ACTTCAGCGACTTTAATAAA+TGG 0.310194 4_1:-86127956 None:intergenic
TGCTGCCCAAGATGATTTCC+AGG 0.324100 4_1:-86129814 None:intergenic
TGGATTTGACTGGAAAATAT+TGG 0.328737 4_1:+86131364 Msa0580850:CDS
ATTTCCCAATCCTTTGATAC+TGG 0.330760 4_1:-86133404 None:intergenic
ATCCTTCACAATTTCTTCAA+TGG 0.335310 4_1:-86132370 None:intergenic
ATCTCTAGGGGAAAATTAAA+AGG 0.335493 4_1:-86130416 None:intergenic
AAACGTGGTCCCTTATATAT+CGG 0.335631 4_1:-86126329 None:intergenic
CCGGTGAAAAGGGTCATTCT+TGG 0.338717 4_1:-86131278 None:intergenic
TTGAAGCTCTGGTAAGAAAA+TGG 0.344474 4_1:-86126500 None:intergenic
CTTGTGACAAAAGAAATATT+TGG 0.358791 4_1:+86132405 Msa0580850:CDS
GTGATTGGGAAATCAGTAAA+TGG 0.361910 4_1:+86133129 Msa0580850:CDS
ATAAATTTGCAGGAAGTGAT+TGG 0.362344 4_1:+86133114 Msa0580850:intron
GTTCCAATCCCTGCACCTCT+GGG 0.363302 4_1:-86133323 None:intergenic
ATTCCAGTCCTTCAATTAAT+GGG 0.374659 4_1:+86130437 Msa0580850:CDS
TGATAGCATTTGAGCTGCTT+TGG 0.380494 4_1:-86129142 None:intergenic
GCAGTACCTGGAAATCATCT+TGG 0.382443 4_1:+86129808 Msa0580850:CDS
GTCGCTGAAGTTGACGAAAC+AGG 0.387767 4_1:+86127968 Msa0580850:CDS
GCCGGTGACCCCAGAGGTGC+AGG 0.388688 4_1:+86133314 Msa0580850:CDS
AGAATAAACTTTAGGGAATC+CGG 0.391591 4_1:+86133512 Msa0580850:three_prime_UTR
TCCTTCACAATTTCTTCAAT+GGG 0.396232 4_1:-86132369 None:intergenic
CTCTTGAACTACCGGTGAAA+AGG 0.398393 4_1:-86131289 None:intergenic
AATCATAAATGATTTCTCTA+TGG 0.402141 4_1:-86133376 None:intergenic
GCACCTCTGGGGTCACCGGC+TGG 0.408608 4_1:-86133311 None:intergenic
GGTCTAAGAGCAAGGACAAC+TGG 0.410303 4_1:+86133165 Msa0580850:CDS
GGATTTGACTGGAAAATATT+GGG 0.410946 4_1:+86131365 Msa0580850:CDS
TTCTTTCAACTTAGATATCA+AGG 0.415463 4_1:-86131732 None:intergenic
CAAACCATGCTTGGGGCAGC+TGG 0.416147 4_1:-86128360 None:intergenic
TAAGAGATTAAGAAGTTAGA+TGG 0.417272 4_1:+86133454 Msa0580850:three_prime_UTR
GGCAGGTTCGTTTCCTGGCT+AGG 0.419273 4_1:+86129779 Msa0580850:intron
ATGGTTCAACATGATGTTGC+AGG 0.419406 4_1:-86126481 None:intergenic
AGAAGAAACCCTTGAAGCTC+TGG 0.420267 4_1:-86126511 None:intergenic
GACCCCAGAGGTGCAGGGAT+TGG 0.422651 4_1:+86133320 Msa0580850:CDS
CCAGGATCAAAGCTGCTCTT+TGG 0.425852 4_1:+86132276 Msa0580850:CDS
TTAATGGGTGCTCTTTATAT+GGG 0.426793 4_1:+86130452 Msa0580850:CDS
AGAGAATTTCTGTGGAGATC+AGG 0.428216 4_1:+86129415 Msa0580850:CDS
TCCAAAACCTCCAACACAAT+TGG 0.429191 4_1:-86132585 None:intergenic
CATGGCTTCCGTTGGCCATA+TGG 0.430033 4_1:+86129841 Msa0580850:CDS
AAAATCCTTACCGGACCATA+TGG 0.433160 4_1:-86129856 None:intergenic
GGATTGTGCAAACCATGCTT+GGG 0.433533 4_1:-86128368 None:intergenic
AGGATTGTGCAAACCATGCT+TGG 0.434635 4_1:-86128369 None:intergenic
TATGAAGTCTACATCTTCTA+CGG 0.434965 4_1:-86130938 None:intergenic
TAAGAAACCTGATGGACATC+AGG 0.435052 4_1:-86131389 None:intergenic
CTCCCTTTCCACACCTGAAA+AGG 0.436204 4_1:-86132429 None:intergenic
AATGGGTTGGATCTTCAAAC+TGG 0.440616 4_1:+86127903 Msa0580850:CDS
CTTTGGTGGAGAGCCTTTGG+AGG 0.444267 4_1:+86132293 Msa0580850:CDS
GGACTCAAATTCAGTGATTG+AGG 0.444703 4_1:+86126439 Msa0580850:five_prime_UTR
AACGTGGTCCCTTATATATC+GGG 0.444888 4_1:-86126328 None:intergenic
TCTTTCAGTACATGGTAAAT+GGG 0.449207 4_1:+86127886 Msa0580850:intron
GTTGTAGGTGAGCATTGTTA+TGG 0.449335 4_1:+86130879 Msa0580850:intron
AGGTTTCAGAATTCTTTGTA+AGG 0.450952 4_1:+86129321 Msa0580850:intron
CATAGGACTCTTCATGTTGA+AGG 0.451011 4_1:-86133431 None:intergenic
TAAATTTGCAGGAAGTGATT+GGG 0.453863 4_1:+86133115 Msa0580850:intron
TTCAAGAGTGGCAGAGAAGT+TGG 0.455459 4_1:+86131304 Msa0580850:CDS
AGTTGACGAAACAGGCGTTC+AGG 0.455504 4_1:+86127976 Msa0580850:CDS
ATGGACCAGTATCAAAGGAT+TGG 0.458365 4_1:+86133399 Msa0580850:CDS
GAAGTTGGCGGTTGATTTGA+AGG 0.459694 4_1:+86131319 Msa0580850:CDS
CATAAACTTGCGGAATTGAA+TGG 0.465340 4_1:-86132317 None:intergenic
TGGACCAGTATCAAAGGATT+GGG 0.469835 4_1:+86133400 Msa0580850:CDS
CCCTGCACCTCTGGGGTCAC+CGG 0.470946 4_1:-86133315 None:intergenic
CAGTACCTGGAAATCATCTT+GGG 0.478137 4_1:+86129809 Msa0580850:CDS
AAGCTATCAGACTTGACAAT+TGG 0.480723 4_1:+86131770 Msa0580850:CDS
TCAGTACATGGTAAATGGGT+TGG 0.480807 4_1:+86127890 Msa0580850:intron
AAAGAGCACCCATTAATTGA+AGG 0.482195 4_1:-86130445 None:intergenic
ATTGGGCCCTGATGTCCATC+AGG 0.486463 4_1:+86131382 Msa0580850:CDS
CTATCAAACCCGATATATAA+GGG 0.486746 4_1:+86126320 Msa0580850:five_prime_UTR
CGCGTTAAATTGGAAGATGC+TGG 0.488079 4_1:+86131344 Msa0580850:CDS
TCAACTACCAATTGTGTTGG+AGG 0.488211 4_1:+86132578 Msa0580850:CDS
CTCTGCCACTCTTGAACTAC+CGG 0.489252 4_1:-86131297 None:intergenic
AACTTCTTAATCTCTTACAT+AGG 0.489373 4_1:-86133448 None:intergenic
CAGATATGTCTCCATACATA+AGG 0.489444 4_1:-86129119 None:intergenic
TTACAACTCTCACTCACCTT+AGG 0.490450 4_1:+86126418 Msa0580850:five_prime_UTR
ATGGGAACATAAACTGCAGT+TGG 0.492835 4_1:-86132351 None:intergenic
TGGAAGATGCTGGATTTGAC+TGG 0.493708 4_1:+86131354 Msa0580850:CDS
TTTCTACTACTAATTAATAC+CGG 0.495516 4_1:-86133531 None:intergenic
GGATCAAAGCTGCTCTTTGG+TGG 0.497533 4_1:+86132279 Msa0580850:CDS
TAAAGGATCATTTGAAACTA+CGG 0.502495 4_1:-86132634 None:intergenic
GCACCCATTAATTGAAGGAC+TGG 0.503843 4_1:-86130440 None:intergenic
CCAAAGAGCAGCTTTGATCC+TGG 0.504350 4_1:-86132276 None:intergenic
TATAAATATAAGATTGTGAA+GGG 0.504612 4_1:-86133568 None:intergenic
ATTGAAGGACTGGAATCTCT+AGG 0.504896 4_1:-86130430 None:intergenic
ATCACTGAATTTGAGTCCTA+AGG 0.505351 4_1:-86126434 None:intergenic
TTGAAGGACTGGAATCTCTA+GGG 0.508269 4_1:-86130429 None:intergenic
CAATATGAAATTGATTAAGA+TGG 0.508768 4_1:-86126289 None:intergenic
ATCATTGCTATTTATGCATG+AGG 0.509897 4_1:+86131559 Msa0580850:CDS
ATAATCTGCACATACCTCTC+TGG 0.512278 4_1:-86128401 None:intergenic
CAGAGGCCATAAAACTTGTA+TGG 0.512943 4_1:+86133348 Msa0580850:CDS
CCTAAGTTCAAAACTTCAGC+AGG 0.514271 4_1:-86127492 None:intergenic
TCTTGAACTACCGGTGAAAA+GGG 0.517410 4_1:-86131288 None:intergenic
GACTCAAATTCAGTGATTGA+GGG 0.517488 4_1:+86126440 Msa0580850:five_prime_UTR
TTAATACTTACAGTAAGGAC+TGG 0.527413 4_1:-86131794 None:intergenic
TCAAATGCTATCACTTCCTA+AGG 0.528341 4_1:+86129152 Msa0580850:CDS
CTGGACAAGCTTTCTACAAA+GGG 0.528842 4_1:-86128341 None:intergenic
CTTCCGTTGGCCATATGGTC+CGG 0.529377 4_1:+86129846 Msa0580850:CDS
TGCAGGAAGATTACACTGCA+TGG 0.538243 4_1:+86131486 Msa0580850:intron
CTACGCCTTCTTCATTCCTG+TGG 0.538358 4_1:+86130910 Msa0580850:CDS
GTAGAAGCAGAAGAGATATC+CGG 0.543562 4_1:+86127462 Msa0580850:CDS
CACTGCATGCATATGCATCC+TGG 0.546703 4_1:-86131517 None:intergenic
GTACTGCAAAAGACCTAGCC+AGG 0.546821 4_1:-86129792 None:intergenic
GCTGGACAAGCTTTCTACAA+AGG 0.547606 4_1:-86128342 None:intergenic
TGATTATGGACCAGTATCAA+AGG 0.551460 4_1:+86133394 Msa0580850:CDS
AACTTCAGCAGGCCTTGCAC+CGG 0.552141 4_1:-86127481 None:intergenic
ATGAAGTCTACATCTTCTAC+GGG 0.552312 4_1:-86130937 None:intergenic
AGCAAAGTCATGGCTTCCGT+TGG 0.553396 4_1:+86129833 Msa0580850:CDS
TTAATTAGTAGTAGAAAATG+AGG 0.557328 4_1:+86133537 Msa0580850:three_prime_UTR
ATCTTCTACGGGTAAGCCAC+AGG 0.558822 4_1:-86130926 None:intergenic
TATCTCTTCTGCTTCTACTG+TGG 0.561336 4_1:-86127457 None:intergenic
TTATGCAGGTTTGGACCAGC+CGG 0.561893 4_1:+86133296 Msa0580850:intron
TTGTCCAGCTGCCCCAAGCA+TGG 0.562911 4_1:+86128356 Msa0580850:CDS
TTCAAACTGGAATACAATTG+TGG 0.565821 4_1:+86127916 Msa0580850:CDS
GTAGACTTCATAAATTGTGA+TGG 0.568165 4_1:+86130949 Msa0580850:CDS
TGGCTAGAGGTGTATATGAA+AGG 0.569699 4_1:-86133647 None:intergenic
TTGCTGTCGACTTTAAGGAC+TGG 0.576840 4_1:-86130482 None:intergenic
CACTGCATGGGTATGTGACC+AGG 0.584855 4_1:+86131499 Msa0580850:CDS
CATCTTGGGCAGCAAAGTCA+TGG 0.585436 4_1:+86129823 Msa0580850:CDS
TTCCAATCCCTGCACCTCTG+GGG 0.591917 4_1:-86133322 None:intergenic
ATATAAATATAAGATTGTGA+AGG 0.593194 4_1:-86133569 None:intergenic
GCAGGAAGATTACACTGCAT+GGG 0.593297 4_1:+86131487 Msa0580850:intron
TCCCATTGAAGAAATTGTGA+AGG 0.593537 4_1:+86132368 Msa0580850:CDS
CTGGAGCTCCACAAAACCAC+TGG 0.594668 4_1:+86133184 Msa0580850:CDS
CAGTCAACTACCAATTGTGT+TGG 0.596922 4_1:+86132575 Msa0580850:CDS
GTAAGCCACAGGAATGAAGA+AGG 0.598802 4_1:-86130915 None:intergenic
AAGAGTGGCAGAGAAGTTGG+CGG 0.600073 4_1:+86131307 Msa0580850:CDS
AAGTTTCTAGAGAATTTCTG+TGG 0.603606 4_1:+86129407 Msa0580850:CDS
AAGTTGGCGGTTGATTTGAA+GGG 0.609509 4_1:+86131320 Msa0580850:CDS
AAGAAACCTGATGGACATCA+GGG 0.621935 4_1:-86131388 None:intergenic
CAGAAGAGATATCCGGTGCA+AGG 0.622527 4_1:+86127469 Msa0580850:CDS
TGAAGGACTGGAATCTCTAG+GGG 0.623190 4_1:-86130428 None:intergenic
TTTCACCGGTAGTTCAAGAG+TGG 0.623677 4_1:+86131292 Msa0580850:CDS
TTAATAGCACCATAAACTTG+CGG 0.624430 4_1:-86132327 None:intergenic
TCTGCTTCTACTGTGGCAAG+TGG 0.625864 4_1:-86127450 None:intergenic
GGAATTGAATGGTCCTCCAA+AGG 0.635379 4_1:-86132306 None:intergenic
CCGGTGACCCCAGAGGTGCA+GGG 0.637271 4_1:+86133315 Msa0580850:CDS
AGTCCTTAAAGTCGACAGCA+AGG 0.638175 4_1:+86130484 Msa0580850:CDS
CTTACGCTGGTCTAAGAGCA+AGG 0.639298 4_1:+86133157 Msa0580850:CDS
AATGAACAAGCTGCTACTAG+AGG 0.654674 4_1:+86130978 Msa0580850:CDS
GTAAATGGCACTACTTACGC+TGG 0.656115 4_1:+86133144 Msa0580850:CDS
CAGCATCTTCCAATTTAACG+CGG 0.656213 4_1:-86131343 None:intergenic
GGACCAGCCGGTGACCCCAG+AGG 0.656353 4_1:+86133308 Msa0580850:CDS
AGGACTCTTCATGTTGAAGG+AGG 0.659704 4_1:-86133428 None:intergenic
TAATACTTACAGTAAGGACT+GGG 0.667435 4_1:-86131793 None:intergenic
TTACCGGACCATATGGCCAA+CGG 0.672833 4_1:-86129849 None:intergenic
TGCAGGGATTGGAACACCAG+AGG 0.673651 4_1:+86133331 Msa0580850:CDS
GATTGTGCAAACCATGCTTG+GGG 0.673754 4_1:-86128367 None:intergenic
ATAAATATAAGATTGTGAAG+GGG 0.679512 4_1:-86133567 None:intergenic
GCAAATCAAAATCATAAACG+TGG 0.685083 4_1:-86126344 None:intergenic
CAGGATGCATATGCATGCAG+TGG 0.713797 4_1:+86131518 Msa0580850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAGTTTATATTAATTTAT+TGG + chr4_1:86127010-86127029 Msa0580850:intron 10.0%
!!! ATTTTGATGAATTATATTAT+GGG - chr4_1:86127751-86127770 None:intergenic 10.0%
!!! TTGGATTTTTTTTTTTTTTA+TGG + chr4_1:86128494-86128513 Msa0580850:intron 10.0%
!!! TGGATTTTTTTTTTTTTTAT+GGG + chr4_1:86128495-86128514 Msa0580850:intron 10.0%
!!! GTATAATATTTTAATGTAAT+AGG + chr4_1:86129021-86129040 Msa0580850:intron 10.0%
!! ATATATAATTAATATTCATG+TGG + chr4_1:86130084-86130103 Msa0580850:intron 10.0%
!! TTCATTGATATATAATATAT+TGG - chr4_1:86130180-86130199 None:intergenic 10.0%
!! TATATGATAATTACAAATAA+AGG - chr4_1:86131173-86131192 None:intergenic 10.0%
!!! AATTTTTAATATTTATTTCC+AGG + chr4_1:86132533-86132552 Msa0580850:intron 10.0%
!! TAATAAAAACTTACTTCATT+TGG + chr4_1:86127151-86127170 Msa0580850:intron 15.0%
!!! TATCTTTTAAAGAGTTTAAA+GGG + chr4_1:86127229-86127248 Msa0580850:intron 15.0%
!! TATAAAATGACATTGTAATA+TGG + chr4_1:86127706-86127725 Msa0580850:intron 15.0%
!!! GATTTTGATGAATTATATTA+TGG - chr4_1:86127752-86127771 None:intergenic 15.0%
!! AAAATACATGTTACTAAAAA+GGG - chr4_1:86128991-86129010 None:intergenic 15.0%
!!! ACAAAAAAAAATATTTTGTG+AGG - chr4_1:86129180-86129199 None:intergenic 15.0%
!! AAATTAAATAAAATCCTTAC+CGG - chr4_1:86129868-86129887 None:intergenic 15.0%
!! ATATTATATATCAATGAACT+TGG + chr4_1:86130182-86130201 Msa0580850:intron 15.0%
!!! TGAAAATAATTTTGATTGAA+TGG + chr4_1:86130616-86130635 Msa0580850:intron 15.0%
!! TCAAAAAAAAAAATACACAA+TGG - chr4_1:86130726-86130745 None:intergenic 15.0%
!! AATATAATCATGAAGTAAAT+TGG - chr4_1:86131076-86131095 None:intergenic 15.0%
!! CATCATTATCATATTATAAA+AGG - chr4_1:86131222-86131241 None:intergenic 15.0%
!!! TTATAATATGATAATGATGT+TGG + chr4_1:86131223-86131242 Msa0580850:intron 15.0%
!! AATCTTACTTGTAAAAATAA+AGG - chr4_1:86132654-86132673 None:intergenic 15.0%
!!! TTTTATGACTCAAATTTATT+TGG + chr4_1:86132673-86132692 Msa0580850:intron 15.0%
!! TTTATGACTCAAATTTATTT+GGG + chr4_1:86132674-86132693 Msa0580850:intron 15.0%
!!! AAGTATAATTAACATTTTCA+AGG - chr4_1:86132764-86132783 None:intergenic 15.0%
!! TGAAAATGTTAATTATACTT+TGG + chr4_1:86132764-86132783 Msa0580850:intron 15.0%
!! AATAAAAAGAAAGAGTTTAA+TGG + chr4_1:86132929-86132948 Msa0580850:intron 15.0%
!! ATAAAAAGAAAGAGTTTAAT+GGG + chr4_1:86132930-86132949 Msa0580850:intron 15.0%
!!! GTTATTTTTTGAAATATTTC+TGG + chr4_1:86133044-86133063 Msa0580850:intron 15.0%
!!! ATGCATCAATATATATATTT+TGG - chr4_1:86133250-86133269 None:intergenic 15.0%
!!! AGATTTTTAGAATAAACTTT+AGG + chr4_1:86133504-86133523 Msa0580850:three_prime_UTR 15.0%
!!! GATTTTTAGAATAAACTTTA+GGG + chr4_1:86133505-86133524 Msa0580850:three_prime_UTR 15.0%
!! TATAAATATAAGATTGTGAA+GGG - chr4_1:86133571-86133590 None:intergenic 15.0%
!! ATATAAATATAAGATTGTGA+AGG - chr4_1:86133572-86133591 None:intergenic 15.0%
!! CAATATGAAATTGATTAAGA+TGG - chr4_1:86126292-86126311 None:intergenic 20.0%
!! GTTGTAATGTAAACTAAAAA+TGG - chr4_1:86126405-86126424 None:intergenic 20.0%
!!! TGTTTTTTAACCGATTAAAT+CGG - chr4_1:86126716-86126735 None:intergenic 20.0%
!!! ATAAATAGAATTTTCTGTCT+TGG + chr4_1:86127069-86127088 Msa0580850:intron 20.0%
!! ATTCTCCTAATTTATTTCAT+TGG + chr4_1:86127204-86127223 Msa0580850:intron 20.0%
!! ATACACCAATGAAATAAATT+AGG - chr4_1:86127212-86127231 None:intergenic 20.0%
!!! GTATCTTTTAAAGAGTTTAA+AGG + chr4_1:86127228-86127247 Msa0580850:intron 20.0%
!! CCTATTAAGAAAAATAACAA+CGG - chr4_1:86127531-86127550 None:intergenic 20.0%
!!! AAATTTTGCAGAATATTGAA+TGG + chr4_1:86127560-86127579 Msa0580850:intron 20.0%
!! ATAATGAATGAAGATTTAGA+AGG + chr4_1:86127585-86127604 Msa0580850:intron 20.0%
!! TAATGAATGAAGATTTAGAA+GGG + chr4_1:86127586-86127605 Msa0580850:intron 20.0%
!! AAAAGGAATATTTCAAGAAA+CGG - chr4_1:86128003-86128022 None:intergenic 20.0%
!! GTTATACTTATTCTTATCTT+AGG - chr4_1:86128907-86128926 None:intergenic 20.0%
!! CAAAATACATGTTACTAAAA+AGG - chr4_1:86128992-86129011 None:intergenic 20.0%
!! TTGTACATAATTTATTCTTC+AGG + chr4_1:86129301-86129320 Msa0580850:intron 20.0%
!!! GATAAAGTTAAATTTTTCCA+GGG - chr4_1:86129620-86129639 None:intergenic 20.0%
!!! TGATAAAGTTAAATTTTTCC+AGG - chr4_1:86129621-86129640 None:intergenic 20.0%
!!! TCAGTTTTAAAGTATAACAT+AGG + chr4_1:86130114-86130133 Msa0580850:intron 20.0%
!!! TATGTTGATTACTATTATTG+TGG + chr4_1:86130593-86130612 Msa0580850:intron 20.0%
!!! ATTTTTTCGTTCTTTATACA+CGG + chr4_1:86131597-86131616 Msa0580850:intron 20.0%
!! CTATATTAATACTTACAGTA+AGG - chr4_1:86131802-86131821 None:intergenic 20.0%
!! CTTACTGTAAGTATTAATAT+AGG + chr4_1:86131800-86131819 Msa0580850:intron 20.0%
!! AAAAACGATATTAATTGTCT+TGG - chr4_1:86131896-86131915 None:intergenic 20.0%
!! TAAGAATTTCAAATGAATTG+TGG - chr4_1:86132183-86132202 None:intergenic 20.0%
!! ATATATATGTCAATGTTAGT+AGG + chr4_1:86132703-86132722 Msa0580850:intron 20.0%
!! GCAAGAAAATATGATATAAT+AGG - chr4_1:86132732-86132751 None:intergenic 20.0%
!! ATTTAAAGGATATGTAATGT+GGG - chr4_1:86133005-86133024 None:intergenic 20.0%
!! AATCATAAATGATTTCTCTA+TGG - chr4_1:86133379-86133398 None:intergenic 20.0%
!! AGAGAAATCATTTATGATTA+TGG + chr4_1:86133380-86133399 Msa0580850:CDS 20.0%
!!! CTAAAAATCTAAAATTCTCA+GGG - chr4_1:86133494-86133513 None:intergenic 20.0%
!!! TCTAAAAATCTAAAATTCTC+AGG - chr4_1:86133495-86133514 None:intergenic 20.0%
!! TTTCTACTACTAATTAATAC+CGG - chr4_1:86133534-86133553 None:intergenic 20.0%
!! TTAATTAGTAGTAGAAAATG+AGG + chr4_1:86133537-86133556 Msa0580850:three_prime_UTR 20.0%
!! ATAAATATAAGATTGTGAAG+GGG - chr4_1:86133570-86133589 None:intergenic 20.0%
! TTTGCAAAATACGCATAAAT+AGG + chr4_1:86126362-86126381 Msa0580850:five_prime_UTR 25.0%
!! CTGCTTTCAATAATTTTTCT+CGG + chr4_1:86126556-86126575 Msa0580850:CDS 25.0%
! TCGGTTAAAAAACAATGTAA+TGG + chr4_1:86126722-86126741 Msa0580850:intron 25.0%
!! AAATGATCAAGTTTGTTTGA+TGG + chr4_1:86126760-86126779 Msa0580850:intron 25.0%
! ATTATAATAATGAGGTGAAG+TGG - chr4_1:86127276-86127295 None:intergenic 25.0%
! CGATCACAATTATAATAATG+AGG - chr4_1:86127284-86127303 None:intergenic 25.0%
! TCTTAAACAAGTCTTAATGT+GGG + chr4_1:86127373-86127392 Msa0580850:intron 25.0%
! CCTGCAAGTTAATATAAAAA+AGG - chr4_1:86127415-86127434 None:intergenic 25.0%
!!! CCTTTTTTATATTAACTTGC+AGG + chr4_1:86127412-86127431 Msa0580850:intron 25.0%
!!! CCGTTGTTATTTTTCTTAAT+AGG + chr4_1:86127528-86127547 Msa0580850:intron 25.0%
! AAAATGACATTGTAATATGG+TGG + chr4_1:86127709-86127728 Msa0580850:intron 25.0%
! CAGAAATTTACAATAACACT+CGG - chr4_1:86127784-86127803 None:intergenic 25.0%
! AACTTAACATGATATATCCA+AGG + chr4_1:86128055-86128074 Msa0580850:intron 25.0%
! GTAATAAAAGAATACATCCT+TGG - chr4_1:86128075-86128094 None:intergenic 25.0%
! AAACACAAATTTCAGTTTGA+AGG + chr4_1:86128236-86128255 Msa0580850:intron 25.0%
! TAATCCAAGAAAACATATAC+AGG - chr4_1:86128458-86128477 None:intergenic 25.0%
! AAAAAAAAATCCAACCTAGA+TGG - chr4_1:86128488-86128507 None:intergenic 25.0%
! AATGTGGAAAACATTTGAAA+AGG - chr4_1:86128779-86128798 None:intergenic 25.0%
! AGATTACAGAATAAACTTCT+AGG + chr4_1:86128816-86128835 Msa0580850:intron 25.0%
!!! GAATTCTCACATTCTTATTT+TGG + chr4_1:86129043-86129062 Msa0580850:intron 25.0%
! AATTAAAGAAGAGAACAACA+GGG - chr4_1:86129276-86129295 None:intergenic 25.0%
! AAAATGATATATTCGCCATT+GGG - chr4_1:86129481-86129500 None:intergenic 25.0%
! CAATTAAAGAATACCAAAGT+AGG - chr4_1:86129526-86129545 None:intergenic 25.0%
! CATGAACTTCAAAATTTCAT+AGG - chr4_1:86129707-86129726 None:intergenic 25.0%
! TCTTCATTTCAACAATTCTT+TGG + chr4_1:86129758-86129777 Msa0580850:intron 25.0%
!!! AATTGACAATTTTGGAACAA+AGG - chr4_1:86129953-86129972 None:intergenic 25.0%
!!! ATATTGGCTTGATATACATT+TGG - chr4_1:86130164-86130183 None:intergenic 25.0%
!! GTTTTACTTAATAACCACAA+AGG - chr4_1:86130224-86130243 None:intergenic 25.0%
!!! TAACTTTTGGCTCTAATTTA+AGG + chr4_1:86130507-86130526 Msa0580850:intron 25.0%
! AATACATAATTGAGACAAGA+CGG + chr4_1:86130550-86130569 Msa0580850:intron 25.0%
! AACATATTATGTACTCTAGA+AGG - chr4_1:86130579-86130598 None:intergenic 25.0%
! ATTGAATGGTTTATCTTCTT+TGG + chr4_1:86130630-86130649 Msa0580850:intron 25.0%
! TTGAATGGTTTATCTTCTTT+GGG + chr4_1:86130631-86130650 Msa0580850:intron 25.0%
! CTAATAGTAATAGACACAAT+GGG - chr4_1:86130754-86130773 None:intergenic 25.0%
! AACATTTGAATGAGAACAAA+AGG - chr4_1:86131018-86131037 None:intergenic 25.0%
!! TTTTGTTCTCATTCAAATGT+TGG + chr4_1:86131017-86131036 Msa0580850:intron 25.0%
! AAATATTGTAAGAAACCTGA+TGG - chr4_1:86131400-86131419 None:intergenic 25.0%
!! AGGTTTCTTACAATATTTTG+TGG + chr4_1:86131402-86131421 Msa0580850:intron 25.0%
! TTCTTTCAACTTAGATATCA+AGG - chr4_1:86131735-86131754 None:intergenic 25.0%
!! ATATTAATTGTCTTGGCTTT+CGG - chr4_1:86131889-86131908 None:intergenic 25.0%
!! GTCAAAAACTAATATCGTTT+TGG - chr4_1:86132102-86132121 None:intergenic 25.0%
! AAAAATTTACTTGAGATACC+AGG + chr4_1:86132258-86132277 Msa0580850:CDS 25.0%
! CTTGTGACAAAAGAAATATT+TGG + chr4_1:86132405-86132424 Msa0580850:CDS 25.0%
!! TAAAGGATCATTTGAAACTA+CGG - chr4_1:86132637-86132656 None:intergenic 25.0%
! GTACATTATTAGTATCAAGT+CGG - chr4_1:86132837-86132856 None:intergenic 25.0%
! TGATACTAATAATGTACGTA+TGG + chr4_1:86132840-86132859 Msa0580850:intron 25.0%
!! CTCTTTCTTTTTATTGTTCA+AGG - chr4_1:86132924-86132943 None:intergenic 25.0%
! GATTTAAAGGATATGTAATG+TGG - chr4_1:86133006-86133025 None:intergenic 25.0%
! CTTTAAATCCAGAAATCAAT+GGG + chr4_1:86133017-86133036 Msa0580850:intron 25.0%
!!! ATTTCTGGCTTTATTATATG+TGG + chr4_1:86133059-86133078 Msa0580850:intron 25.0%
! AATCAGACATGATCATTTAT+GGG + chr4_1:86133086-86133105 Msa0580850:intron 25.0%
! AACAATTATTGTGTTTATGC+AGG + chr4_1:86133282-86133301 Msa0580850:intron 25.0%
! AACTTCTTAATCTCTTACAT+AGG - chr4_1:86133451-86133470 None:intergenic 25.0%
! TAAGAGATTAAGAAGTTAGA+TGG + chr4_1:86133454-86133473 Msa0580850:three_prime_UTR 25.0%
!!! AATGCTTACTTTTATCATGA+TGG - chr4_1:86133670-86133689 None:intergenic 25.0%
AGATGGTATGTATCTGATTT+CGG - chr4_1:86126275-86126294 None:intergenic 30.0%
ACTATCAAACCCGATATATA+AGG + chr4_1:86126319-86126338 Msa0580850:five_prime_UTR 30.0%
CTATCAAACCCGATATATAA+GGG + chr4_1:86126320-86126339 Msa0580850:five_prime_UTR 30.0%
GCAAATCAAAATCATAAACG+TGG - chr4_1:86126347-86126366 None:intergenic 30.0%
CGAGAAAAATTATTGAAAGC+AGG - chr4_1:86126558-86126577 None:intergenic 30.0%
! TTTTTAACCGATTAAATCGG+TGG - chr4_1:86126713-86126732 None:intergenic 30.0%
TTTGAGCTTCAACAAAATCA+CGG - chr4_1:86126864-86126883 None:intergenic 30.0%
! ATTTTGTTGAAGCTCAAAAG+CGG + chr4_1:86126866-86126885 Msa0580850:intron 30.0%
!! ATTTATTGGGTCTTGTTAAC+CGG + chr4_1:86127024-86127043 Msa0580850:intron 30.0%
CTCTTAAACAAGTCTTAATG+TGG + chr4_1:86127372-86127391 Msa0580850:intron 30.0%
AGAAAAATAACAACGGTATG+TGG - chr4_1:86127524-86127543 None:intergenic 30.0%
! ACATTGTAATATGGTGGAAA+AGG + chr4_1:86127715-86127734 Msa0580850:intron 30.0%
AATGAAACGTTGTGTAATTG+TGG + chr4_1:86127833-86127852 Msa0580850:intron 30.0%
ATGAAACGTTGTGTAATTGT+GGG + chr4_1:86127834-86127853 Msa0580850:intron 30.0%
TCTTTCAGTACATGGTAAAT+GGG + chr4_1:86127886-86127905 Msa0580850:intron 30.0%
TTCAAACTGGAATACAATTG+TGG + chr4_1:86127916-86127935 Msa0580850:CDS 30.0%
ACAATTGTGGATCCTTTAAA+TGG + chr4_1:86127929-86127948 Msa0580850:CDS 30.0%
ATAAATGGCTCTCCATTTAA+AGG - chr4_1:86127944-86127963 None:intergenic 30.0%
ACTTCAGCGACTTTAATAAA+TGG - chr4_1:86127959-86127978 None:intergenic 30.0%
!!! ACAAAACAGAGGTTTTTTCA+GGG - chr4_1:86128032-86128051 None:intergenic 30.0%
! GTTAAGTTTTCACAAAACAG+AGG - chr4_1:86128043-86128062 None:intergenic 30.0%
ATTCCATAGTTTGAAGAGTA+AGG - chr4_1:86128100-86128119 None:intergenic 30.0%
TATGGAATATTAAGTGACCA+AGG + chr4_1:86128112-86128131 Msa0580850:intron 30.0%
! GAAACCTGTATATGTTTTCT+TGG + chr4_1:86128451-86128470 Msa0580850:intron 30.0%
AATAAACACACAAAGCAAAC+AGG - chr4_1:86128542-86128561 None:intergenic 30.0%
GATCAGCAAAAGAAACTATA+TGG - chr4_1:86128580-86128599 None:intergenic 30.0%
! TTCTTTTGCTGATCATTCAT+TGG + chr4_1:86128586-86128605 Msa0580850:intron 30.0%
AAAAAATGCAAAAACCTCTG+GGG - chr4_1:86128628-86128647 None:intergenic 30.0%
CAAAAAATGCAAAAACCTCT+GGG - chr4_1:86128629-86128648 None:intergenic 30.0%
ACAAAAAATGCAAAAACCTC+TGG - chr4_1:86128630-86128649 None:intergenic 30.0%
! TTTTCGCTTTCCTTTTCAAA+TGG + chr4_1:86128699-86128718 Msa0580850:intron 30.0%
ACTCACATTACCATTTGAAA+AGG - chr4_1:86128712-86128731 None:intergenic 30.0%
ACTTGTTTAGTCAGAAAATG+TGG - chr4_1:86128795-86128814 None:intergenic 30.0%
!!! TTATTTTGGCCATCTTTTTG+AGG + chr4_1:86129057-86129076 Msa0580850:intron 30.0%
! TTTTGCAGATACCTTATGTA+TGG + chr4_1:86129108-86129127 Msa0580850:intron 30.0%
!! AATATTTTGTGAGGTACCTT+AGG - chr4_1:86129171-86129190 None:intergenic 30.0%
TTATGTTGTCTGTTTACAGT+AGG + chr4_1:86129227-86129246 Msa0580850:intron 30.0%
CAATTAAAGAAGAGAACAAC+AGG - chr4_1:86129277-86129296 None:intergenic 30.0%
AGGTTTCAGAATTCTTTGTA+AGG + chr4_1:86129321-86129340 Msa0580850:intron 30.0%
! AAGTTTCTAGAGAATTTCTG+TGG + chr4_1:86129407-86129426 Msa0580850:CDS 30.0%
GGATATCAATCATTTAGCAA+TGG - chr4_1:86129460-86129479 None:intergenic 30.0%
CTAAATGATTGATATCCCAA+TGG + chr4_1:86129463-86129482 Msa0580850:intron 30.0%
GAAAATGATATATTCGCCAT+TGG - chr4_1:86129482-86129501 None:intergenic 30.0%
! CATTTTCTGATACAGAATGA+TGG + chr4_1:86129495-86129514 Msa0580850:intron 30.0%
! AATTGATAGTTACCATTGAC+TGG + chr4_1:86129541-86129560 Msa0580850:intron 30.0%
CAAAAAGAATAAATCGCCAA+AGG - chr4_1:86129735-86129754 None:intergenic 30.0%
!!! AAATTGGTATGCTGTTTTGA+AGG + chr4_1:86129889-86129908 Msa0580850:intron 30.0%
!!! GGTTAAGCAAGTTAGTTTTT+AGG + chr4_1:86129980-86129999 Msa0580850:intron 30.0%
TGAGTATCTAATTTCCTTTG+TGG + chr4_1:86130207-86130226 Msa0580850:intron 30.0%
TCTGTGTATTGTAATCTCAA+AGG + chr4_1:86130360-86130379 Msa0580850:intron 30.0%
TATTGTAATCTCAAAGGTGA+GGG + chr4_1:86130366-86130385 Msa0580850:intron 30.0%
! ATCTCTAGGGGAAAATTAAA+AGG - chr4_1:86130419-86130438 None:intergenic 30.0%
ATTCCAGTCCTTCAATTAAT+GGG + chr4_1:86130437-86130456 Msa0580850:CDS 30.0%
! ATTAATGGGTGCTCTTTATA+TGG + chr4_1:86130451-86130470 Msa0580850:CDS 30.0%
! TTAATGGGTGCTCTTTATAT+GGG + chr4_1:86130452-86130471 Msa0580850:CDS 30.0%
CCTAATAGTAATAGACACAA+TGG - chr4_1:86130755-86130774 None:intergenic 30.0%
CCATTGTGTCTATTACTATT+AGG + chr4_1:86130752-86130771 Msa0580850:intron 30.0%
TATGAAGTCTACATCTTCTA+CGG - chr4_1:86130941-86130960 None:intergenic 30.0%
GTAGACTTCATAAATTGTGA+TGG + chr4_1:86130949-86130968 Msa0580850:CDS 30.0%
ATAAGACCCAATAAAATTGC+AGG - chr4_1:86131137-86131156 None:intergenic 30.0%
TGGATTTGACTGGAAAATAT+TGG + chr4_1:86131364-86131383 Msa0580850:CDS 30.0%
GGATTTGACTGGAAAATATT+GGG + chr4_1:86131365-86131384 Msa0580850:CDS 30.0%
!! ATCATTGCTATTTATGCATG+AGG + chr4_1:86131559-86131578 Msa0580850:CDS 30.0%
AAAGAACGAAAAAATAACCG+AGG - chr4_1:86131592-86131611 None:intergenic 30.0%
TAGTAAAGACACAGTACATA+AGG - chr4_1:86131667-86131686 None:intergenic 30.0%
AAAAAGGGAAATTAAAACCC+TGG - chr4_1:86131693-86131712 None:intergenic 30.0%
!!! TAATTTCCCTTTTTCAGAAC+TGG + chr4_1:86131699-86131718 Msa0580850:intron 30.0%
TAATACTTACAGTAAGGACT+GGG - chr4_1:86131796-86131815 None:intergenic 30.0%
TTAATACTTACAGTAAGGAC+TGG - chr4_1:86131797-86131816 None:intergenic 30.0%
AAGACTTCCGTAAATTTCAA+GGG - chr4_1:86131854-86131873 None:intergenic 30.0%
TAAGACTTCCGTAAATTTCA+AGG - chr4_1:86131855-86131874 None:intergenic 30.0%
TGTCCATATTAGCAATAGAA+GGG - chr4_1:86132024-86132043 None:intergenic 30.0%
ATGTCCATATTAGCAATAGA+AGG - chr4_1:86132025-86132044 None:intergenic 30.0%
!! ATATCGTTTTGGATGTACAA+GGG - chr4_1:86132091-86132110 None:intergenic 30.0%
!! AATATCGTTTTGGATGTACA+AGG - chr4_1:86132092-86132111 None:intergenic 30.0%
TTAATAGCACCATAAACTTG+CGG - chr4_1:86132330-86132349 None:intergenic 30.0%
TCCTTCACAATTTCTTCAAT+GGG - chr4_1:86132372-86132391 None:intergenic 30.0%
ATCCTTCACAATTTCTTCAA+TGG - chr4_1:86132373-86132392 None:intergenic 30.0%
! AGAAATATTTGGACCTTTTC+AGG + chr4_1:86132416-86132435 Msa0580850:CDS 30.0%
! TTTTGTAGTCAGTAATAACC+TGG - chr4_1:86132554-86132573 None:intergenic 30.0%
!! AAAAGCTGTAACGTTGTTTT+TGG - chr4_1:86132807-86132826 None:intergenic 30.0%
! AAAACAACGTTACAGCTTTT+AGG + chr4_1:86132807-86132826 Msa0580850:intron 30.0%
AATAAATGTCAGTGCAAAGT+TGG + chr4_1:86132972-86132991 Msa0580850:intron 30.0%
!! CCATTGATTTCTGGATTTAA+AGG - chr4_1:86133019-86133038 None:intergenic 30.0%
CCTTTAAATCCAGAAATCAA+TGG + chr4_1:86133016-86133035 Msa0580850:intron 30.0%
CAATCAGACATGATCATTTA+TGG + chr4_1:86133085-86133104 Msa0580850:intron 30.0%
ATGGGTGAAAATAAATTTGC+AGG + chr4_1:86133104-86133123 Msa0580850:intron 30.0%
ATAAATTTGCAGGAAGTGAT+TGG + chr4_1:86133114-86133133 Msa0580850:intron 30.0%
TAAATTTGCAGGAAGTGATT+GGG + chr4_1:86133115-86133134 Msa0580850:intron 30.0%
TGGTAAGTAGATATCTTTCA+AGG + chr4_1:86133204-86133223 Msa0580850:intron 30.0%
GGTAAGTAGATATCTTTCAA+GGG + chr4_1:86133205-86133224 Msa0580850:intron 30.0%
TTATTGTGTTTATGCAGGTT+TGG + chr4_1:86133287-86133306 Msa0580850:intron 30.0%
! AGAATAAACTTTAGGGAATC+CGG + chr4_1:86133512-86133531 Msa0580850:three_prime_UTR 30.0%
GATGGTATGTATCTGATTTC+GGG - chr4_1:86126274-86126293 None:intergenic 35.0%
AAACGTGGTCCCTTATATAT+CGG - chr4_1:86126332-86126351 None:intergenic 35.0%
ATCACTGAATTTGAGTCCTA+AGG - chr4_1:86126437-86126456 None:intergenic 35.0%
GACTCAAATTCAGTGATTGA+GGG + chr4_1:86126440-86126459 Msa0580850:five_prime_UTR 35.0%
! TTGAAGCTCTGGTAAGAAAA+TGG - chr4_1:86126503-86126522 None:intergenic 35.0%
! ATTTTCTTACCAGAGCTTCA+AGG + chr4_1:86126502-86126521 Msa0580850:CDS 35.0%
! TTTTCTTACCAGAGCTTCAA+GGG + chr4_1:86126503-86126522 Msa0580850:CDS 35.0%
AGCAGGAAGAACATTGTATT+TGG - chr4_1:86126541-86126560 None:intergenic 35.0%
!! CAATTAGCCACCGATTTAAT+CGG + chr4_1:86126703-86126722 Msa0580850:intron 35.0%
GGATCAGTTTGATGAAATCA+AGG + chr4_1:86126833-86126852 Msa0580850:intron 35.0%
ATATGCCTGTGAATGTGATA+TGG + chr4_1:86126936-86126955 Msa0580850:intron 35.0%
ATCAACCATATCACATTCAC+AGG - chr4_1:86126944-86126963 None:intergenic 35.0%
ATTTATAGATTCCAGTGCCT+CGG - chr4_1:86127055-86127074 None:intergenic 35.0%
CTGTCTTGGAAATATTGTCT+TGG + chr4_1:86127083-86127102 Msa0580850:intron 35.0%
!!! CTGAAGTTTTGAACTTAGGT+AGG + chr4_1:86127496-86127515 Msa0580850:intron 35.0%
AGACAAAACATTCAGAGTGA+TGG - chr4_1:86127864-86127883 None:intergenic 35.0%
TTGTCTTCTCTTTCAGTACA+TGG + chr4_1:86127878-86127897 Msa0580850:intron 35.0%
CTCTTTCAGTACATGGTAAA+TGG + chr4_1:86127885-86127904 Msa0580850:intron 35.0%
!!! CACAAAACAGAGGTTTTTTC+AGG - chr4_1:86128033-86128052 None:intergenic 35.0%
GGGCTGATAAGTCAAAAAAT+TGG - chr4_1:86128324-86128343 None:intergenic 35.0%
!! TGGTTTGCACAATCCTTTTA+AGG + chr4_1:86128376-86128395 Msa0580850:CDS 35.0%
TTCTGTAACGAAATTGACGA+GGG - chr4_1:86128434-86128453 None:intergenic 35.0%
TTTCTGTAACGAAATTGACG+AGG - chr4_1:86128435-86128454 None:intergenic 35.0%
TGGATTAATGATTGCCATCT+AGG + chr4_1:86128471-86128490 Msa0580850:intron 35.0%
TTAATGATTGCCATCTAGGT+TGG + chr4_1:86128475-86128494 Msa0580850:intron 35.0%
! ACACAAAGCAAACAGGTTTT+CGG - chr4_1:86128535-86128554 None:intergenic 35.0%
! TTTTGCTGATCATTCATTGG+TGG + chr4_1:86128589-86128608 Msa0580850:intron 35.0%
!! AATGTGAGTTGATCTTCAGA+TGG + chr4_1:86128723-86128742 Msa0580850:intron 35.0%
AGAGGAGTAACTAAAATACC+TGG + chr4_1:86128861-86128880 Msa0580850:intron 35.0%
GCTTAAGAATACATGATTCC+AGG - chr4_1:86128882-86128901 None:intergenic 35.0%
ACCTTTAGACCTCAAAAAGA+TGG - chr4_1:86129069-86129088 None:intergenic 35.0%
CAGATATGTCTCCATACATA+AGG - chr4_1:86129122-86129141 None:intergenic 35.0%
TCAAATGCTATCACTTCCTA+AGG + chr4_1:86129152-86129171 Msa0580850:CDS 35.0%
TCTGTTTACAGTAGGATAGT+AGG + chr4_1:86129235-86129254 Msa0580850:intron 35.0%
TTCTCCAAAAAGTTATCAGC+AGG + chr4_1:86129358-86129377 Msa0580850:CDS 35.0%
! AAAGCCTGCTGATAACTTTT+TGG - chr4_1:86129365-86129384 None:intergenic 35.0%
GATCAATATCTACCAGTCAA+TGG - chr4_1:86129556-86129575 None:intergenic 35.0%
TGAAGTTCATGTCATTCCTT+TGG + chr4_1:86129716-86129735 Msa0580850:intron 35.0%
CATTTCAACAATTCTTTGGC+AGG + chr4_1:86129762-86129781 Msa0580850:intron 35.0%
! TATGTGTCATTCACTCACTA+TGG + chr4_1:86129924-86129943 Msa0580850:intron 35.0%
! CACGAGGTAATTGACAATTT+TGG - chr4_1:86129961-86129980 None:intergenic 35.0%
CAAAATTGTCAATTACCTCG+TGG + chr4_1:86129959-86129978 Msa0580850:intron 35.0%
TTTAAGCTCTCTCTACAAGA+TGG + chr4_1:86130012-86130031 Msa0580850:intron 35.0%
TAACATAGGACAACAGTTTG+AGG + chr4_1:86130128-86130147 Msa0580850:intron 35.0%
TGCCCCAAAATTTAGATTAG+CGG + chr4_1:86130252-86130271 Msa0580850:intron 35.0%
GTATTGTAATCTCAAAGGTG+AGG + chr4_1:86130365-86130384 Msa0580850:intron 35.0%
GATTCCAGTCCTTCAATTAA+TGG + chr4_1:86130436-86130455 Msa0580850:CDS 35.0%
!! AAAGAGCACCCATTAATTGA+AGG - chr4_1:86130448-86130467 None:intergenic 35.0%
CATCTACTTCTATTCTTGCA+TGG - chr4_1:86130684-86130703 None:intergenic 35.0%
!! AACCATTGACTCATTGTTGT+AGG + chr4_1:86130864-86130883 Msa0580850:intron 35.0%
ATGAAGTCTACATCTTCTAC+GGG - chr4_1:86130940-86130959 None:intergenic 35.0%
! ACCTCATCCTGCAATTTTAT+TGG + chr4_1:86131127-86131146 Msa0580850:intron 35.0%
! CCTCATCCTGCAATTTTATT+GGG + chr4_1:86131128-86131147 Msa0580850:intron 35.0%
ATGTAGTCACGTTCAGATAA+AGG - chr4_1:86131196-86131215 None:intergenic 35.0%
CTCTATTCTTTCTTGATTGC+AGG + chr4_1:86131469-86131488 Msa0580850:intron 35.0%
!! TTGCTATTTATGCATGAGGT+TGG + chr4_1:86131563-86131582 Msa0580850:intron 35.0%
CAAGTTTATCCTAGTTCATG+AGG - chr4_1:86131631-86131650 None:intergenic 35.0%
ACTGTGTCTTTACTAAATCC+AGG + chr4_1:86131672-86131691 Msa0580850:intron 35.0%
CTGTGTCTTTACTAAATCCA+GGG + chr4_1:86131673-86131692 Msa0580850:intron 35.0%
!! CTTAGACCAGTTCTGAAAAA+GGG - chr4_1:86131708-86131727 None:intergenic 35.0%
!! TCTTAGACCAGTTCTGAAAA+AGG - chr4_1:86131709-86131728 None:intergenic 35.0%
AAGCTATCAGACTTGACAAT+TGG + chr4_1:86131770-86131789 Msa0580850:CDS 35.0%
CAATGCTCCCTTGAAATTTA+CGG + chr4_1:86131844-86131863 Msa0580850:intron 35.0%
ACTCCCTTCTATTGCTAATA+TGG + chr4_1:86132018-86132037 Msa0580850:intron 35.0%
CAAAGTCAAACACAAAAGCA+TGG - chr4_1:86132053-86132072 None:intergenic 35.0%
!! GCTTTTGTGTTTGACTTTGT+TGG + chr4_1:86132054-86132073 Msa0580850:intron 35.0%
! TTTGTGTTTGACTTTGTTGG+TGG + chr4_1:86132057-86132076 Msa0580850:intron 35.0%
ATTTCTTCCTTTAGTGCACT+TGG + chr4_1:86132127-86132146 Msa0580850:intron 35.0%
CATAAACTTGCGGAATTGAA+TGG - chr4_1:86132320-86132339 None:intergenic 35.0%
CATTCAATTCCGCAAGTTTA+TGG + chr4_1:86132318-86132337 Msa0580850:CDS 35.0%
TCCCATTGAAGAAATTGTGA+AGG + chr4_1:86132368-86132387 Msa0580850:CDS 35.0%
TAAATCCAGAAATCAATGGG+CGG + chr4_1:86133020-86133039 Msa0580850:intron 35.0%
GTGATTGGGAAATCAGTAAA+TGG + chr4_1:86133129-86133148 Msa0580850:CDS 35.0%
GAAAGATATCTACTTACCAG+TGG - chr4_1:86133203-86133222 None:intergenic 35.0%
! GCAAGACCATACAAGTTTTA+TGG - chr4_1:86133357-86133376 None:intergenic 35.0%
TGATTATGGACCAGTATCAA+AGG + chr4_1:86133394-86133413 Msa0580850:CDS 35.0%
ATTTCCCAATCCTTTGATAC+TGG - chr4_1:86133407-86133426 None:intergenic 35.0%
! ACTTTTATCATGATGGCTAG+AGG - chr4_1:86133663-86133682 None:intergenic 35.0%
AACGTGGTCCCTTATATATC+GGG - chr4_1:86126331-86126350 None:intergenic 40.0%
TTACAACTCTCACTCACCTT+AGG + chr4_1:86126418-86126437 Msa0580850:five_prime_UTR 40.0%
GGACTCAAATTCAGTGATTG+AGG + chr4_1:86126439-86126458 Msa0580850:five_prime_UTR 40.0%
ATGGTTCAACATGATGTTGC+AGG - chr4_1:86126484-86126503 None:intergenic 40.0%
! TGTTCTGCATGTTTGAGATC+AGG + chr4_1:86126812-86126831 Msa0580850:intron 40.0%
TTTATAGATTCCAGTGCCTC+GGG - chr4_1:86127054-86127073 None:intergenic 40.0%
! GGTGAAGTGGCAAAGTATTA+GGG - chr4_1:86127263-86127282 None:intergenic 40.0%
! AGGTGAAGTGGCAAAGTATT+AGG - chr4_1:86127264-86127283 None:intergenic 40.0%
TGAAACTGTGTGTTCGCATT+GGG + chr4_1:86127332-86127351 Msa0580850:intron 40.0%
TATCTCTTCTGCTTCTACTG+TGG - chr4_1:86127460-86127479 None:intergenic 40.0%
GTAGAAGCAGAAGAGATATC+CGG + chr4_1:86127462-86127481 Msa0580850:CDS 40.0%
CCTAAGTTCAAAACTTCAGC+AGG - chr4_1:86127495-86127514 None:intergenic 40.0%
!!! CCTGCTGAAGTTTTGAACTT+AGG + chr4_1:86127492-86127511 Msa0580850:CDS 40.0%
TCAGTACATGGTAAATGGGT+TGG + chr4_1:86127890-86127909 Msa0580850:intron 40.0%
!! AATGGGTTGGATCTTCAAAC+TGG + chr4_1:86127903-86127922 Msa0580850:CDS 40.0%
!!! TTTTTTCAGGGCTCGACAAA+AGG - chr4_1:86128020-86128039 None:intergenic 40.0%
CCATAGTTTGAAGAGTAAGG+TGG - chr4_1:86128097-86128116 None:intergenic 40.0%
CCACCTTACTCTTCAAACTA+TGG + chr4_1:86128094-86128113 Msa0580850:intron 40.0%
AAACCTCTTGTCGAAGCAAT+GGG - chr4_1:86128149-86128168 None:intergenic 40.0%
TAAACCTCTTGTCGAAGCAA+TGG - chr4_1:86128150-86128169 None:intergenic 40.0%
AAGGCTATAGATGAGTCGAT+TGG + chr4_1:86128255-86128274 Msa0580850:intron 40.0%
CTGGACAAGCTTTCTACAAA+GGG - chr4_1:86128344-86128363 None:intergenic 40.0%
ATAATCTGCACATACCTCTC+TGG - chr4_1:86128404-86128423 None:intergenic 40.0%
GATATAGAAACTATCCCCAG+AGG + chr4_1:86128611-86128630 Msa0580850:intron 40.0%
!! TGAGTTGATCTTCAGATGGT+TGG + chr4_1:86128727-86128746 Msa0580850:intron 40.0%
TTTGCAGAAGTCGACTAACT+GGG - chr4_1:86128842-86128861 None:intergenic 40.0%
!!! GCCATCTTTTTGAGGTCTAA+AGG + chr4_1:86129065-86129084 Msa0580850:intron 40.0%
TGATAGCATTTGAGCTGCTT+TGG - chr4_1:86129145-86129164 None:intergenic 40.0%
! AAGTTATCAGCAGGCTTTTG+CGG + chr4_1:86129367-86129386 Msa0580850:CDS 40.0%
AGAGAATTTCTGTGGAGATC+AGG + chr4_1:86129415-86129434 Msa0580850:CDS 40.0%
! AATGATGGAAGAGCCTACTT+TGG + chr4_1:86129510-86129529 Msa0580850:intron 40.0%
GGCTTCATTGAAAGAACTCA+TGG - chr4_1:86129584-86129603 None:intergenic 40.0%
CAGTACCTGGAAATCATCTT+GGG + chr4_1:86129809-86129828 Msa0580850:CDS 40.0%
AAAATCCTTACCGGACCATA+TGG - chr4_1:86129859-86129878 None:intergenic 40.0%
!! AACTAACTTGCTTAACCACG+AGG - chr4_1:86129977-86129996 None:intergenic 40.0%
! CGCCGCTAATCTAAATTTTG+GGG - chr4_1:86130257-86130276 None:intergenic 40.0%
! GCGCCGCTAATCTAAATTTT+GGG - chr4_1:86130258-86130277 None:intergenic 40.0%
AACTGCCTGAAGAATTGACA+TGG - chr4_1:86130280-86130299 None:intergenic 40.0%
TTGAAGGACTGGAATCTCTA+GGG - chr4_1:86130432-86130451 None:intergenic 40.0%
ATTGAAGGACTGGAATCTCT+AGG - chr4_1:86130433-86130452 None:intergenic 40.0%
!! TTACCTTGCTGTCGACTTTA+AGG - chr4_1:86130490-86130509 None:intergenic 40.0%
!! GGTTTATCTTCTTTGGGATG+AGG + chr4_1:86130637-86130656 Msa0580850:intron 40.0%
TACTTCTATTCTTGCATGGC+AGG - chr4_1:86130680-86130699 None:intergenic 40.0%
AACAGAAGCAGAGCAAAATG+AGG - chr4_1:86130781-86130800 None:intergenic 40.0%
! GCTCTGCTTCTGTTGAATTT+TGG + chr4_1:86130787-86130806 Msa0580850:intron 40.0%
CACCTACAACAATGAGTCAA+TGG - chr4_1:86130869-86130888 None:intergenic 40.0%
! GTTGTAGGTGAGCATTGTTA+TGG + chr4_1:86130879-86130898 Msa0580850:intron 40.0%
AATGAACAAGCTGCTACTAG+AGG + chr4_1:86130978-86130997 Msa0580850:CDS 40.0%
CCCAATAAAATTGCAGGATG+AGG - chr4_1:86131131-86131150 None:intergenic 40.0%
TCTTGAACTACCGGTGAAAA+GGG - chr4_1:86131291-86131310 None:intergenic 40.0%
!! AAGTTGGCGGTTGATTTGAA+GGG + chr4_1:86131320-86131339 Msa0580850:CDS 40.0%
CAGCATCTTCCAATTTAACG+CGG - chr4_1:86131346-86131365 None:intergenic 40.0%
! AAGAAACCTGATGGACATCA+GGG - chr4_1:86131391-86131410 None:intergenic 40.0%
! TAAGAAACCTGATGGACATC+AGG - chr4_1:86131392-86131411 None:intergenic 40.0%
GTTGAATGTCCTCATGAACT+AGG + chr4_1:86131619-86131638 Msa0580850:intron 40.0%
TGTTCTTCCAAGTGCACTAA+AGG - chr4_1:86132137-86132156 None:intergenic 40.0%
ATGGGAACATAAACTGCAGT+TGG - chr4_1:86132354-86132373 None:intergenic 40.0%
!!! TATTTGGACCTTTTCAGGTG+TGG + chr4_1:86132421-86132440 Msa0580850:intron 40.0%
CAGTCAACTACCAATTGTGT+TGG + chr4_1:86132575-86132594 Msa0580850:CDS 40.0%
TCAACTACCAATTGTGTTGG+AGG + chr4_1:86132578-86132597 Msa0580850:CDS 40.0%
! ACCAATTGTGTTGGAGGTTT+TGG + chr4_1:86132584-86132603 Msa0580850:CDS 40.0%
TCCAAAACCTCCAACACAAT+TGG - chr4_1:86132588-86132607 None:intergenic 40.0%
AAATCCAGAAATCAATGGGC+GGG + chr4_1:86133021-86133040 Msa0580850:intron 40.0%
!! TCTACTTACCAGTGGTTTTG+TGG - chr4_1:86133195-86133214 None:intergenic 40.0%
!! CATACAAGTTTTATGGCCTC+TGG - chr4_1:86133350-86133369 None:intergenic 40.0%
CAGAGGCCATAAAACTTGTA+TGG + chr4_1:86133348-86133367 Msa0580850:CDS 40.0%
ATGGACCAGTATCAAAGGAT+TGG + chr4_1:86133399-86133418 Msa0580850:CDS 40.0%
TGGACCAGTATCAAAGGATT+GGG + chr4_1:86133400-86133419 Msa0580850:CDS 40.0%
CATAGGACTCTTCATGTTGA+AGG - chr4_1:86133434-86133453 None:intergenic 40.0%
! TGGCTAGAGGTGTATATGAA+AGG - chr4_1:86133650-86133669 None:intergenic 40.0%
AGAAGAAACCCTTGAAGCTC+TGG - chr4_1:86126514-86126533 None:intergenic 45.0%
TTATAGATTCCAGTGCCTCG+GGG - chr4_1:86127053-86127072 None:intergenic 45.0%
!! TTTGGTGCTTAACCAATGCC+CGG + chr4_1:86127169-86127188 Msa0580850:intron 45.0%
GTGAAACTGTGTGTTCGCAT+TGG + chr4_1:86127331-86127350 Msa0580850:intron 45.0%
AATGGGTATAGGCAATGCCT+TGG - chr4_1:86128132-86128151 None:intergenic 45.0%
CTTGTCGAAGCAATGGGTAT+AGG - chr4_1:86128143-86128162 None:intergenic 45.0%
ATACCCATTGCTTCGACAAG+AGG + chr4_1:86128143-86128162 Msa0580850:intron 45.0%
TAAGCCTCTGTGTGTAAGAC+AGG + chr4_1:86128181-86128200 Msa0580850:intron 45.0%
AAGCCTCTGTGTGTAAGACA+GGG + chr4_1:86128182-86128201 Msa0580850:intron 45.0%
GCTGGACAAGCTTTCTACAA+AGG - chr4_1:86128345-86128364 None:intergenic 45.0%
GATTGTGCAAACCATGCTTG+GGG - chr4_1:86128370-86128389 None:intergenic 45.0%
GGATTGTGCAAACCATGCTT+GGG - chr4_1:86128371-86128390 None:intergenic 45.0%
AGGATTGTGCAAACCATGCT+TGG - chr4_1:86128372-86128391 None:intergenic 45.0%
!!! ATCCTTTTAAGGCACCAGAG+AGG + chr4_1:86128387-86128406 Msa0580850:CDS 45.0%
TACCTCTCTGGTGCCTTAAA+AGG - chr4_1:86128392-86128411 None:intergenic 45.0%
! CAGGTTTTCGGTGAACAATG+AGG - chr4_1:86128523-86128542 None:intergenic 45.0%
CTTTGCAGAAGTCGACTAAC+TGG - chr4_1:86128843-86128862 None:intergenic 45.0%
! GTTAGTCGACTTCTGCAAAG+AGG + chr4_1:86128843-86128862 Msa0580850:intron 45.0%
TTCCAGGGACAGAAGAATTC+AGG - chr4_1:86129605-86129624 None:intergenic 45.0%
TCACACACACACACACAACA+AGG + chr4_1:86129638-86129657 Msa0580850:intron 45.0%
ACACACACACACAACAAGGA+GGG + chr4_1:86129642-86129661 Msa0580850:intron 45.0%
GCAGTACCTGGAAATCATCT+TGG + chr4_1:86129808-86129827 Msa0580850:CDS 45.0%
! GGCGCCGCTAATCTAAATTT+TGG - chr4_1:86130259-86130278 None:intergenic 45.0%
CAGACACAGAGACACTCATT+AGG - chr4_1:86130304-86130323 None:intergenic 45.0%
CTAATGAGTGTCTCTGTGTC+TGG + chr4_1:86130302-86130321 Msa0580850:intron 45.0%
TGAAGGACTGGAATCTCTAG+GGG - chr4_1:86130431-86130450 None:intergenic 45.0%
GCACCCATTAATTGAAGGAC+TGG - chr4_1:86130443-86130462 None:intergenic 45.0%
!! TTGCTGTCGACTTTAAGGAC+TGG - chr4_1:86130485-86130504 None:intergenic 45.0%
AGTCCTTAAAGTCGACAGCA+AGG + chr4_1:86130484-86130503 Msa0580850:CDS 45.0%
! GTCGACAGCAAGGTAACTTT+TGG + chr4_1:86130494-86130513 Msa0580850:intron 45.0%
GTAAGCCACAGGAATGAAGA+AGG - chr4_1:86130918-86130937 None:intergenic 45.0%
AACAAGCTGCTACTAGAGGT+TGG + chr4_1:86130982-86131001 Msa0580850:intron 45.0%
! CCAAGAATGACCCTTTTCAC+CGG + chr4_1:86131278-86131297 Msa0580850:CDS 45.0%
CTCTTGAACTACCGGTGAAA+AGG - chr4_1:86131292-86131311 None:intergenic 45.0%
TTTCACCGGTAGTTCAAGAG+TGG + chr4_1:86131292-86131311 Msa0580850:CDS 45.0%
TTCAAGAGTGGCAGAGAAGT+TGG + chr4_1:86131304-86131323 Msa0580850:CDS 45.0%
!! GAAGTTGGCGGTTGATTTGA+AGG + chr4_1:86131319-86131338 Msa0580850:CDS 45.0%
TTTGAAGGGCCGCGTTAAAT+TGG + chr4_1:86131334-86131353 Msa0580850:CDS 45.0%
CGCGTTAAATTGGAAGATGC+TGG + chr4_1:86131344-86131363 Msa0580850:CDS 45.0%
TGGAAGATGCTGGATTTGAC+TGG + chr4_1:86131354-86131373 Msa0580850:CDS 45.0%
TGTGGATTCCAGAATGACAC+TGG + chr4_1:86131420-86131439 Msa0580850:intron 45.0%
! ATTCCAGAATGACACTGGCT+CGG + chr4_1:86131425-86131444 Msa0580850:intron 45.0%
TGCAGGAAGATTACACTGCA+TGG + chr4_1:86131486-86131505 Msa0580850:intron 45.0%
GCAGGAAGATTACACTGCAT+GGG + chr4_1:86131487-86131506 Msa0580850:intron 45.0%
TTTGGATGTACAAGGGCTCA+TGG - chr4_1:86132084-86132103 None:intergenic 45.0%
GGAATTGAATGGTCCTCCAA+AGG - chr4_1:86132309-86132328 None:intergenic 45.0%
!!! GACCTTTTCAGGTGTGGAAA+GGG + chr4_1:86132427-86132446 Msa0580850:intron 45.0%
AATCCAGAAATCAATGGGCG+GGG + chr4_1:86133022-86133041 Msa0580850:intron 45.0%
GTAAATGGCACTACTTACGC+TGG + chr4_1:86133144-86133163 Msa0580850:CDS 45.0%
AGGACTCTTCATGTTGAAGG+AGG - chr4_1:86133431-86133450 None:intergenic 45.0%
!! ATAGTTTATATTAATTTATT+GGG + chr4_1:86127011-86127030 Msa0580850:intron 5.0%
!!! GATTTTATTTAATTTTAAAT+TGG + chr4_1:86129873-86129892 Msa0580850:intron 5.0%
!!! TTTTATTTTAATTATATGAA+TGG + chr4_1:86131912-86131931 Msa0580850:intron 5.0%
!!! AAATTATATTTTGAAAATAA+AGG - chr4_1:86132488-86132507 None:intergenic 5.0%
TATAGATTCCAGTGCCTCGG+GGG - chr4_1:86127052-86127071 None:intergenic 50.0%
! TTGGTGCTTAACCAATGCCC+GGG + chr4_1:86127170-86127189 Msa0580850:intron 50.0%
TCTGCTTCTACTGTGGCAAG+TGG - chr4_1:86127453-86127472 None:intergenic 50.0%
CAGAAGAGATATCCGGTGCA+AGG + chr4_1:86127469-86127488 Msa0580850:CDS 50.0%
GTCGCTGAAGTTGACGAAAC+AGG + chr4_1:86127968-86127987 Msa0580850:CDS 50.0%
AGTTGACGAAACAGGCGTTC+AGG + chr4_1:86127976-86127995 Msa0580850:CDS 50.0%
GAACCCTGTCTTACACACAG+AGG - chr4_1:86128188-86128207 None:intergenic 50.0%
AGCCTGAATTCTTCTGTCCC+TGG + chr4_1:86129600-86129619 Msa0580850:intron 50.0%
CACACACACACACAACAAGG+AGG + chr4_1:86129641-86129660 Msa0580850:intron 50.0%
CACACACACACAACAAGGAG+GGG + chr4_1:86129643-86129662 Msa0580850:intron 50.0%
ACACACACACAACAAGGAGG+GGG + chr4_1:86129644-86129663 Msa0580850:intron 50.0%
TCTTTGGCAGGTTCGTTTCC+TGG + chr4_1:86129774-86129793 Msa0580850:intron 50.0%
GTACTGCAAAAGACCTAGCC+AGG - chr4_1:86129795-86129814 None:intergenic 50.0%
! GCTAGGTCTTTTGCAGTACC+TGG + chr4_1:86129796-86129815 Msa0580850:CDS 50.0%
TGCTGCCCAAGATGATTTCC+AGG - chr4_1:86129817-86129836 None:intergenic 50.0%
CATCTTGGGCAGCAAAGTCA+TGG + chr4_1:86129823-86129842 Msa0580850:CDS 50.0%
AGCAAAGTCATGGCTTCCGT+TGG + chr4_1:86129833-86129852 Msa0580850:CDS 50.0%
TTACCGGACCATATGGCCAA+CGG - chr4_1:86129852-86129871 None:intergenic 50.0%
! AAGGTGAGGGTTTGTTCTGC+AGG + chr4_1:86130379-86130398 Msa0580850:intron 50.0%
CTACGCCTTCTTCATTCCTG+TGG + chr4_1:86130910-86130929 Msa0580850:CDS 50.0%
ATCTTCTACGGGTAAGCCAC+AGG - chr4_1:86130929-86130948 None:intergenic 50.0%
CCGGTGAAAAGGGTCATTCT+TGG - chr4_1:86131281-86131300 None:intergenic 50.0%
CTCTGCCACTCTTGAACTAC+CGG - chr4_1:86131300-86131319 None:intergenic 50.0%
AAGAGTGGCAGAGAAGTTGG+CGG + chr4_1:86131307-86131326 Msa0580850:CDS 50.0%
! AAACCGAGCCAGTGTCATTC+TGG - chr4_1:86131431-86131450 None:intergenic 50.0%
CACTGCATGCATATGCATCC+TGG - chr4_1:86131520-86131539 None:intergenic 50.0%
CAGGATGCATATGCATGCAG+TGG + chr4_1:86131518-86131537 Msa0580850:CDS 50.0%
! ATGCATGAGGTTGGTCACCT+CGG + chr4_1:86131572-86131591 Msa0580850:intron 50.0%
! CCAAAGAGCAGCTTTGATCC+TGG - chr4_1:86132279-86132298 None:intergenic 50.0%
CCAGGATCAAAGCTGCTCTT+TGG + chr4_1:86132276-86132295 Msa0580850:CDS 50.0%
GGATCAAAGCTGCTCTTTGG+TGG + chr4_1:86132279-86132298 Msa0580850:CDS 50.0%
!!! GGACCTTTTCAGGTGTGGAA+AGG + chr4_1:86132426-86132445 Msa0580850:intron 50.0%
CTCCCTTTCCACACCTGAAA+AGG - chr4_1:86132432-86132451 None:intergenic 50.0%
!! TAACCCCGCCCATTGATTTC+TGG - chr4_1:86133028-86133047 None:intergenic 50.0%
! CTTACGCTGGTCTAAGAGCA+AGG + chr4_1:86133157-86133176 Msa0580850:CDS 50.0%
GGTCTAAGAGCAAGGACAAC+TGG + chr4_1:86133165-86133184 Msa0580850:CDS 50.0%
TTATGCAGGTTTGGACCAGC+CGG + chr4_1:86133296-86133315 Msa0580850:intron 50.0%
TGGTGCTTAACCAATGCCCG+GGG + chr4_1:86127171-86127190 Msa0580850:intron 55.0%
GAGAATGTTAACCAGCCCCC+GGG - chr4_1:86127190-86127209 None:intergenic 55.0%
GGAGAATGTTAACCAGCCCC+CGG - chr4_1:86127191-86127210 None:intergenic 55.0%
GTGTGTTCGCATTGGGTGTC+AGG + chr4_1:86127339-86127358 Msa0580850:intron 55.0%
AACTTCAGCAGGCCTTGCAC+CGG - chr4_1:86127484-86127503 None:intergenic 55.0%
CACACACACAACAAGGAGGG+GGG + chr4_1:86129645-86129664 Msa0580850:intron 55.0%
CATGGCTTCCGTTGGCCATA+TGG + chr4_1:86129841-86129860 Msa0580850:CDS 55.0%
CTTCCGTTGGCCATATGGTC+CGG + chr4_1:86129846-86129865 Msa0580850:CDS 55.0%
GTTGGCCATATGGTCCGGTA+AGG + chr4_1:86129851-86129870 Msa0580850:intron 55.0%
CGGCGCCATGTCAATTCTTC+AGG + chr4_1:86130272-86130291 Msa0580850:intron 55.0%
! GTGAGGGTTTGTTCTGCAGG+TGG + chr4_1:86130382-86130401 Msa0580850:intron 55.0%
ATTGGGCCCTGATGTCCATC+AGG + chr4_1:86131382-86131401 Msa0580850:CDS 55.0%
CACTGCATGGGTATGTGACC+AGG + chr4_1:86131499-86131518 Msa0580850:CDS 55.0%
GCTCTTTGGTGGAGAGCCTT+TGG + chr4_1:86132290-86132309 Msa0580850:CDS 55.0%
CTTTGGTGGAGAGCCTTTGG+AGG + chr4_1:86132293-86132312 Msa0580850:CDS 55.0%
CAGGTGTGGAAAGGGAGACT+TGG + chr4_1:86132435-86132454 Msa0580850:intron 55.0%
CTGGAGCTCCACAAAACCAC+TGG + chr4_1:86133184-86133203 Msa0580850:CDS 55.0%
TTCCAATCCCTGCACCTCTG+GGG - chr4_1:86133325-86133344 None:intergenic 55.0%
GTTCCAATCCCTGCACCTCT+GGG - chr4_1:86133326-86133345 None:intergenic 55.0%
TGTTCCAATCCCTGCACCTC+TGG - chr4_1:86133327-86133346 None:intergenic 55.0%
TGCAGGGATTGGAACACCAG+AGG + chr4_1:86133331-86133350 Msa0580850:CDS 55.0%
GGTGCTTAACCAATGCCCGG+GGG + chr4_1:86127172-86127191 Msa0580850:intron 60.0%
TTGTCCAGCTGCCCCAAGCA+TGG + chr4_1:86128356-86128375 Msa0580850:CDS 60.0%
CAAACCATGCTTGGGGCAGC+TGG - chr4_1:86128363-86128382 None:intergenic 60.0%
GGCAGGTTCGTTTCCTGGCT+AGG + chr4_1:86129779-86129798 Msa0580850:intron 60.0%
CTTGTTAACCGGAGCCCCCG+AGG + chr4_1:86127035-86127054 Msa0580850:intron 65.0%
CTTAACCAATGCCCGGGGGC+TGG + chr4_1:86127176-86127195 Msa0580850:intron 65.0%
GTTAACCAGCCCCCGGGCAT+TGG - chr4_1:86127184-86127203 None:intergenic 65.0%
! GACCCCAGAGGTGCAGGGAT+TGG + chr4_1:86133320-86133339 Msa0580850:CDS 65.0%
TTCCAGTGCCTCGGGGGCTC+CGG - chr4_1:86127046-86127065 None:intergenic 70.0%
!! CCCTGCACCTCTGGGGTCAC+CGG - chr4_1:86133318-86133337 None:intergenic 70.0%
! CCGGTGACCCCAGAGGTGCA+GGG + chr4_1:86133315-86133334 Msa0580850:CDS 70.0%
AACCGGAGCCCCCGAGGCAC+TGG + chr4_1:86127041-86127060 Msa0580850:intron 75.0%
GGACCAGCCGGTGACCCCAG+AGG + chr4_1:86133308-86133327 Msa0580850:CDS 75.0%
!! GCACCTCTGGGGTCACCGGC+TGG - chr4_1:86133314-86133333 None:intergenic 75.0%
! GCCGGTGACCCCAGAGGTGC+AGG + chr4_1:86133314-86133333 Msa0580850:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86126269 86133713 86126269 ID=Msa0580850;Name=Msa0580850
chr4_1 mRNA 86126269 86133713 86126269 ID=Msa0580850-mRNA-1;Parent=Msa0580850;Name=Msa0580850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=223|1|1|1|1|1|16|271|554
chr4_1 exon 86126269 86126577 86126269 ID=Msa0580850-mRNA-1:exon:31782;Parent=Msa0580850-mRNA-1
chr4_1 exon 86127434 86127513 86127434 ID=Msa0580850-mRNA-1:exon:31783;Parent=Msa0580850-mRNA-1
chr4_1 exon 86127894 86127997 86127894 ID=Msa0580850-mRNA-1:exon:31784;Parent=Msa0580850-mRNA-1
chr4_1 exon 86128341 86128408 86128341 ID=Msa0580850-mRNA-1:exon:31785;Parent=Msa0580850-mRNA-1
chr4_1 exon 86129116 86129173 86129116 ID=Msa0580850-mRNA-1:exon:31786;Parent=Msa0580850-mRNA-1
chr4_1 exon 86129323 86129436 86129323 ID=Msa0580850-mRNA-1:exon:31787;Parent=Msa0580850-mRNA-1
chr4_1 exon 86129784 86129867 86129784 ID=Msa0580850-mRNA-1:exon:31788;Parent=Msa0580850-mRNA-1
chr4_1 exon 86130401 86130505 86130401 ID=Msa0580850-mRNA-1:exon:31789;Parent=Msa0580850-mRNA-1
chr4_1 exon 86130886 86130999 86130886 ID=Msa0580850-mRNA-1:exon:31790;Parent=Msa0580850-mRNA-1
chr4_1 exon 86131272 86131403 86131272 ID=Msa0580850-mRNA-1:exon:31791;Parent=Msa0580850-mRNA-1
chr4_1 exon 86131491 86131580 86131491 ID=Msa0580850-mRNA-1:exon:31792;Parent=Msa0580850-mRNA-1
chr4_1 exon 86131716 86131805 86131716 ID=Msa0580850-mRNA-1:exon:31793;Parent=Msa0580850-mRNA-1
chr4_1 exon 86132228 86132437 86132228 ID=Msa0580850-mRNA-1:exon:31794;Parent=Msa0580850-mRNA-1
chr4_1 exon 86132555 86132665 86132555 ID=Msa0580850-mRNA-1:exon:31795;Parent=Msa0580850-mRNA-1
chr4_1 exon 86133126 86133205 86133126 ID=Msa0580850-mRNA-1:exon:31796;Parent=Msa0580850-mRNA-1
chr4_1 exon 86133304 86133713 86133304 ID=Msa0580850-mRNA-1:exon:31797;Parent=Msa0580850-mRNA-1
chr4_1 five_prime_UTR 86126269 86126491 86126269 ID=Msa0580850-mRNA-1:five_prime_utr;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86126492 86126577 86126492 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86127434 86127513 86127434 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86127894 86127997 86127894 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86128341 86128408 86128341 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86129116 86129173 86129116 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86129323 86129436 86129323 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86129784 86129867 86129784 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86130401 86130505 86130401 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86130886 86130999 86130886 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86131272 86131403 86131272 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86131491 86131580 86131491 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86131716 86131805 86131716 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86132228 86132437 86132228 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86132555 86132665 86132555 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86133126 86133205 86133126 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 CDS 86133304 86133442 86133304 ID=Msa0580850-mRNA-1:cds;Parent=Msa0580850-mRNA-1
chr4_1 three_prime_UTR 86133443 86133713 86133443 ID=Msa0580850-mRNA-1:three_prime_utr;Parent=Msa0580850-mRNA-1
Gene Sequence

>Msa0580850

ATGTTGAACCATTTTCTTACCAGAGCTTCAAGGGTTTCTTCTCTTACCAAATACAATGTTCTTCCTGCTTTCAATAATTTTTCTCGGTCTGTCAGTTCAATACCACTTGCCACAGTAGAAGCAGAAGAGATATCCGGTGCAAGGCCTGCTGAAGTTTTGAACTTAGTACATGGTAAATGGGTTGGATCTTCAAACTGGAATACAATTGTGGATCCTTTAAATGGAGAGCCATTTATTAAAGTCGCTGAAGTTGACGAAACAGGCGTTCAGCCCTTTGTAGAAAGCTTGTCCAGCTGCCCCAAGCATGGTTTGCACAATCCTTTTAAGGCACCAGAGAGATACCTTATGTATGGAGACATATCTGCCAAAGCAGCTCAAATGCTATCACTTCCTAAGGTTTCAGAATTCTTTGTAAGGCTAATACAGAGAGTTTCTCCAAAAAGTTATCAGCAGGCTTTTGCGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTCTGTGGAGATCAGGTTCGTTTCCTGGCTAGGTCTTTTGCAGTACCTGGAAATCATCTTGGGCAGCAAAGTCATGGCTTCCGTTGGCCATATGGTCCGGTGGCAATTATTACTCCTTTTAATTTTCCCCTAGAGATTCCAGTCCTTCAATTAATGGGTGCTCTTTATATGGGCAACAAGCCAGTCCTTAAAGTCGACAGCAAGGTGAGCATTGTTATGGAGCAAATGCTACGCCTTCTTCATTCCTGTGGCTTACCCGTAGAAGATGTAGACTTCATAAATTGTGATGGAAAGACAATGAACAAGCTGCTACTAGAGGCAAATCCAAGAATGACCCTTTTCACCGGTAGTTCAAGAGTGGCAGAGAAGTTGGCGGTTGATTTGAAGGGCCGCGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATATTGGGCCCTGATGTCCATCAGGAAGATTACACTGCATGGGTATGTGACCAGGATGCATATGCATGCAGTGGTCAGAAGTGCTCAGCACAATCATTGCTATTTATGCATGAGAACTGGTCTAAGACTTCCTTGATATCTAAGTTGAAAGAACTTGCTGAGAGAAGAAAGCTATCAGACTTGACAATTGGCCCAGTCCTTACTTTTACAACTAAATCATTGCTTGAGCACACAAAAAATTTACTTGAGATACCAGGATCAAAGCTGCTCTTTGGTGGAGAGCCTTTGGAGGACCATTCAATTCCGCAAGTTTATGGTGCTATTAAACCAACTGCAGTTTATGTTCCCATTGAAGAAATTGTGAAGGATAAGAATTACAAGCTTGTGACAAAAGAAATATTTGGACCTTTTCAGGTTATTACTGACTACAAAAGCAGTCAACTACCAATTGTGTTGGAGGTTTTGGAAAAAATGCATGCACATTTAACTGCTGCCGTAGTTTCAAATGATCCTTTATTTTTACAAGAAGTGATTGGGAAATCAGTAAATGGCACTACTTACGCTGGTCTAAGAGCAAGGACAACTGGAGCTCCACAAAACCACTGGTTTGGACCAGCCGGTGACCCCAGAGGTGCAGGGATTGGAACACCAGAGGCCATAAAACTTGTATGGTCTTGCCATAGAGAAATCATTTATGATTATGGACCAGTATCAAAGGATTGGGAAATTCCTCCTTCAACATGA

Protein sequence

>Msa0580850

MLNHFLTRASRVSSLTKYNVLPAFNNFSRSVSSIPLATVEAEEISGARPAEVLNLVHGKWVGSSNWNTIVDPLNGEPFIKVAEVDETGVQPFVESLSSCPKHGLHNPFKAPERYLMYGDISAKAAQMLSLPKVSEFFVRLIQRVSPKSYQQAFAEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHSCGLPVEDVDFINCDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYTAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLISKLKELAERRKLSDLTIGPVLTFTTKSLLEHTKNLLEIPGSKLLFGGEPLEDHSIPQVYGAIKPTAVYVPIEEIVKDKNYKLVTKEIFGPFQVITDYKSSQLPIVLEVLEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDYGPVSKDWEIPPST*