AlfalfaGEDB | Msa0617850

M. sativa cultivar zhongmu-4 / Msa0617850

KEGG: -
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039
PFAM: PF13520.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617850	XP_003629706.1	98.330	479	8	0	1	479	1	479	0.0	946

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617850	sp\|Q9LHN7\|PHSC_ARATH	60.768	469	179	2	11	479	4	467	0.0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0412760	Msa0617850	0.800186	1.621789e-48	-8.615850e-47
Msa0530380	Msa0617850	0.822722	2.034295e-53	-8.615850e-47
Msa0617850	Msa0656660	0.857741	1.327327e-62	-8.615850e-47
Msa0617850	Msa0700790	0.864231	1.410562e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617850	MtrunA17_Chr8g0378551	98.330	479	8	0	1	479	1	479	0.0	946
Msa0617850	MtrunA17_Chr5g0426641	64.719	445	152	1	35	479	20	459	0.0	585
Msa0617850	MtrunA17_Chr1g0211371	48.444	450	229	2	26	475	12	458	3.90e-152	441
Msa0617850	MtrunA17_Chr5g0409251	47.846	441	228	2	28	468	18	456	9.27e-150	436
Msa0617850	MtrunA17_Chr3g0094551	48.299	441	225	2	38	478	17	454	1.53e-149	434
Msa0617850	MtrunA17_Chr5g0393681	48.402	438	222	3	33	469	3	437	7.07e-133	393

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0617850	AT3G13620.1	60.768	469	179	2	11	479	4	467	0.0	575
Msa0617850	AT1G31830.1	48.451	452	230	2	28	479	37	485	3.82e-157	456
Msa0617850	AT1G31830.2	48.451	452	230	2	28	479	21	469	3.98e-157	455
Msa0617850	AT5G05630.1	49.091	440	223	1	29	468	42	480	2.36e-154	448
Msa0617850	AT1G31820.1	49.451	455	220	3	34	481	30	481	1.37e-152	443
Msa0617850	AT3G19553.1	50.847	472	215	6	18	479	4	468	2.61e-148	432

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Find 85 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTGGGTTTGTTATTT+GGG	0.257640	4_2:+68529664	Msa0617850:CDS
AAGAGGTGGATTGAATTCAA+TGG	0.542090	4_2:+68530748	Msa0617850:CDS
AAGGTTCCACTTGGATTATT+TGG	0.196544	4_2:+68530586	Msa0617850:CDS
AAGTAGATGAGAAAGATTAG+AGG	0.454596	4_2:-68529494	None:intergenic
AAGTTTAGGACAAGAGGGTG+TGG	0.548272	4_2:+68529994	Msa0617850:CDS
AATCAAAGACATTAACACAA+AGG	0.619734	4_2:-68529939	None:intergenic
AATCCAAGTGGAACCTTATA+AGG	0.308677	4_2:-68530580	None:intergenic
AATCTTTCTCATCTACTTTG+AGG	0.359694	4_2:+68529499	Msa0617850:CDS
ACAACATTCCCTGGAAATGG+TGG	0.555951	4_2:+68529650	Msa0617850:CDS
ACATAAACCAACAGCACAGA+TGG	0.538480	4_2:-68530631	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGATGAGAAAGATTAGA+GGG	-	chr4_2:68529496-68529515	None:intergenic	30.0%
AAGTAGATGAGAAAGATTAG+AGG	-	chr4_2:68529497-68529516	None:intergenic	30.0%
AATCTTTCTCATCTACTTTG+AGG	+	chr4_2:68529499-68529518	Msa0617850:CDS	30.0%
AATCCAAGAATTGCAAAAAG+TGG	-	chr4_2:68529572-68529591	None:intergenic	30.0%
CTGGAATACTCCAAATAAAT+GGG	-	chr4_2:68529604-68529623	None:intergenic	30.0%
ACAAAAATAGACACAATACG+AGG	-	chr4_2:68529830-68529849	None:intergenic	30.0%
CTAAAATTGATCCTAGTAGA+TGG	+	chr4_2:68529969-68529988	Msa0617850:CDS	30.0%
GGGTTATATAATTCCTTTGT+TGG	+	chr4_2:68530159-68530178	Msa0617850:CDS	30.0%
GAATTGGTTGAAATATTGGA+TGG	+	chr4_2:68530261-68530280	Msa0617850:CDS	30.0%
TATAAGGTCGTTTCATTGTA+GGG	-	chr4_2:68530567-68530586	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	68529365	68530813	68529365	ID=Msa0617850;Name=Msa0617850
chr4_2	mRNA	68529365	68530813	68529365	ID=Msa0617850-mRNA-1;Parent=Msa0617850;Name=Msa0617850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|482
chr4_2	exon	68529365	68530813	68529365	ID=Msa0617850-mRNA-1:exon:19672;Parent=Msa0617850-mRNA-1
chr4_2	CDS	68529365	68530813	68529365	ID=Msa0617850-mRNA-1:cds;Parent=Msa0617850-mRNA-1

Gene Sequence

>Msa0617850

ATGGGTGCTTATGATTCTGATTCCCTTCACTCTGCAGCACAAAATTCCTATCATCAACATCTTCTAAACCAAAGAGAAGAAGAAGATCCAAACCCCAAAACCAAATCACAAAAAAAACTAGCACTTCTCCCTCTAATCTTTCTCATCTACTTTGAGGTATCTGGTGGACCTTATGGTGAAGAAGCAACAGTAAGTGCTGCAGGTCCACTTTTTGCAATTCTTGGATTTATAATTTTCCCATTTATTTGGAGTATTCCAGAGGCTCTTTTAACTGCAGAATTAGCTACAACATTCCCTGGAAATGGTGGGTTTGTTATTTGGGCTAATGAAGCTTTTGGTCCATTTTGGGGGTCTCTTATGGGATATTGGAAATTCTTTTGTGGTGTCATAAATTTAGCATCTTACCCAATTCTATGTATAGATTATCTTAAAGTTGTGATTCCTGTTTTGTCTTCAGGTTTACCTCGTATTGTGTCTATTTTTGTCTCAACTTCTTTGTTGTCCTTTTTGAATTATTCTGGTTTAGCTATAGTTGGTTATACTGCAGTTGGTTTAGGTGTTATTTCCCTTTTGCCCTTTGTGTTAATGTCTTTGATTTCAGTGCCTAAAATTGATCCTAGTAGATGGTTAAGTTTAGGACAAGAGGGTGTGGAAAAAGATTGGACACTTTTTTTCAATACTATTTTTTGGAACTTGAATTTTTGGGATAGTGCTAGTACTTTAGCTGGTGAAGTTGAAGAGCCACATAAAACTTTTCCTAAAGCTTTGCTTTTTGCTGGATTGTTAACTTGTTTGGGTTATATAATTCCTTTGTTGGCTACTACCGGGGCTATGCCACTTGATCAAGAAGTTTGGGTTGGTGGGTATTTTGCACATGTGGCTGGTTTGATTGCTGGGAATTGGTTGAAATATTGGATGGAAATTGGTGCTGTTTTGTCAATTATTGGATTATTTGAAGCTCAATTAAGTAGTGCTGCATATCAACTTTTAGGTATGTCTGACTTGGGATTCATACCAAAAATATTTGGTGAAAGGTCAAAGTGGTTTAACACACCTTGGATGGCAATTTTGATTTCAACAATAATATCACTTGGTATGTCTTTTTTTAGTTTTACAGAGATTATATCCACTGTTAATTTTTTGTATAGTTTAGGGATGCTTTTGGAGTTTGCTTCTTTCCTTAAGTTGAGGAAAAAATTCCCTACAATGAAACGACCTTATAAGGTTCCACTTGGATTATTTGGTTTGATTGTAATGTGTTTTGTTCCATCTGTGCTGTTGGTTTATGTGATGACTGTTGCTACCAAAATTGTATTTGTGGCTAGTACTTTCTTAACATTCTTAGGGATATTGTTGTATTATTTCATGAATCTTTGTAAGTCTAAGAGGTGGATTGAATTCAATGGAGTAGGAGATAAATTGGATGAAGATGAAGATATTATTATATAG

Protein sequence

>Msa0617850

MGAYDSDSLHSAAQNSYHQHLLNQREEEDPNPKTKSQKKLALLPLIFLIYFEVSGGPYGEEATVSAAGPLFAILGFIIFPFIWSIPEALLTAELATTFPGNGGFVIWANEAFGPFWGSLMGYWKFFCGVINLASYPILCIDYLKVVIPVLSSGLPRIVSIFVSTSLLSFLNYSGLAIVGYTAVGLGVISLLPFVLMSLISVPKIDPSRWLSLGQEGVEKDWTLFFNTIFWNLNFWDSASTLAGEVEEPHKTFPKALLFAGLLTCLGYIIPLLATTGAMPLDQEVWVGGYFAHVAGLIAGNWLKYWMEIGAVLSIIGLFEAQLSSAAYQLLGMSDLGFIPKIFGERSKWFNTPWMAILISTIISLGMSFFSFTEIISTVNFLYSLGMLLEFASFLKLRKKFPTMKRPYKVPLGLFGLIVMCFVPSVLLVYVMTVATKIVFVASTFLTFLGILLYYFMNLCKSKRWIEFNGVGDKLDEDEDIII*