Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530380 | XP_003604378.1 | 97.642 | 212 | 4 | 1 | 1 | 212 | 1 | 211 | 2.57e-150 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530380 | sp|Q9LVZ8|LOR12_ARATH | 55.714 | 210 | 88 | 3 | 3 | 212 | 16 | 220 | 1.45e-79 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530380 | B7FGI9 | 97.642 | 212 | 4 | 1 | 1 | 212 | 1 | 211 | 1.23e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0530380 | 0.828246 | 1.000042e-54 | -8.615850e-47 |
| Msa0008850 | Msa0530380 | 0.802547 | 5.327391e-49 | -8.615850e-47 |
| Msa0038310 | Msa0530380 | 0.812701 | 3.713509e-51 | -8.615850e-47 |
| Msa0055280 | Msa0530380 | 0.804044 | 2.609428e-49 | -8.615850e-47 |
| Msa0086090 | Msa0530380 | 0.813862 | 2.064960e-51 | -8.615850e-47 |
| Msa0112420 | Msa0530380 | 0.801067 | 1.072359e-48 | -8.615850e-47 |
| Msa0132620 | Msa0530380 | 0.800091 | 1.695427e-48 | -8.615850e-47 |
| Msa0223100 | Msa0530380 | 0.844224 | 8.631126e-59 | -8.615850e-47 |
| Msa0223290 | Msa0530380 | 0.845579 | 3.720141e-59 | -8.615850e-47 |
| Msa0223380 | Msa0530380 | 0.849177 | 3.823788e-60 | -8.615850e-47 |
| Msa0364860 | Msa0530380 | 0.800403 | 1.465188e-48 | -8.615850e-47 |
| Msa0370870 | Msa0530380 | 0.821245 | 4.473677e-53 | -8.615850e-47 |
| Msa0377530 | Msa0530380 | 0.802416 | 5.670007e-49 | -8.615850e-47 |
| Msa0379540 | Msa0530380 | 0.839992 | 1.137121e-57 | -8.615850e-47 |
| Msa0388030 | Msa0530380 | -0.802070 | 6.677554e-49 | -8.615850e-47 |
| Msa0404220 | Msa0530380 | 0.844914 | 5.626796e-59 | -8.615850e-47 |
| Msa0404700 | Msa0530380 | 0.803336 | 3.659714e-49 | -8.615850e-47 |
| Msa0412760 | Msa0530380 | 0.860493 | 1.987244e-63 | -8.615850e-47 |
| Msa0416320 | Msa0530380 | 0.801024 | 1.094451e-48 | -8.615850e-47 |
| Msa0419050 | Msa0530380 | 0.804131 | 2.503049e-49 | -8.615850e-47 |
| Msa0419620 | Msa0530380 | -0.822483 | 2.312351e-53 | -8.615850e-47 |
| Msa0464900 | Msa0530380 | 0.807181 | 5.731279e-50 | -8.615850e-47 |
| Msa0475400 | Msa0530380 | 0.811519 | 6.722415e-51 | -8.615850e-47 |
| Msa0253370 | Msa0530380 | 0.803750 | 3.002958e-49 | -8.615850e-47 |
| Msa0288320 | Msa0530380 | 0.803428 | 3.503202e-49 | -8.615850e-47 |
| Msa0302650 | Msa0530380 | 0.826449 | 2.697009e-54 | -8.615850e-47 |
| Msa0362060 | Msa0530380 | 0.829827 | 4.139754e-55 | -8.615850e-47 |
| Msa0363100 | Msa0530380 | 0.809762 | 1.612110e-50 | -8.615850e-47 |
| Msa0363170 | Msa0530380 | 0.809716 | 1.649492e-50 | -8.615850e-47 |
| Msa0504410 | Msa0530380 | 0.819182 | 1.328501e-52 | -8.615850e-47 |
| Msa0505060 | Msa0530380 | 0.816744 | 4.723089e-52 | -8.615850e-47 |
| Msa0510560 | Msa0530380 | 0.807890 | 4.052741e-50 | -8.615850e-47 |
| Msa0528580 | Msa0530380 | 0.802052 | 6.735542e-49 | -8.615850e-47 |
| Msa0530380 | Msa0549740 | 0.805830 | 1.104673e-49 | -8.615850e-47 |
| Msa0530380 | Msa0563650 | -0.819133 | 1.362698e-52 | -8.615850e-47 |
| Msa0530380 | Msa0579340 | 0.848555 | 5.690010e-60 | -8.615850e-47 |
| Msa0530380 | Msa0580390 | -0.830077 | 3.597725e-55 | -8.615850e-47 |
| Msa0530380 | Msa0581920 | 0.840144 | 1.037988e-57 | -8.615850e-47 |
| Msa0530380 | Msa0587290 | 0.891268 | 4.638104e-74 | -8.615850e-47 |
| Msa0530380 | Msa0610770 | 0.832940 | 7.094405e-56 | -8.615850e-47 |
| Msa0530380 | Msa0617830 | 0.800740 | 1.250447e-48 | -8.615850e-47 |
| Msa0530380 | Msa0617850 | 0.822722 | 2.034295e-53 | -8.615850e-47 |
| Msa0530380 | Msa0622340 | 0.812755 | 3.614381e-51 | -8.615850e-47 |
| Msa0530380 | Msa0626230 | 0.800791 | 1.221215e-48 | -8.615850e-47 |
| Msa0530380 | Msa0627080 | 0.845248 | 4.570343e-59 | -8.615850e-47 |
| Msa0530380 | Msa0650620 | 0.808138 | 3.587600e-50 | -8.615850e-47 |
| Msa0530380 | Msa0650650 | 0.842682 | 2.227525e-58 | -8.615850e-47 |
| Msa0530380 | Msa0650740 | 0.842981 | 1.855150e-58 | -8.615850e-47 |
| Msa0530380 | Msa0651320 | 0.848109 | 7.557182e-60 | -8.615850e-47 |
| Msa0530380 | Msa0665150 | 0.887247 | 1.687435e-72 | -8.615850e-47 |
| Msa0530380 | Msa0693490 | 0.816637 | 4.989854e-52 | -8.615850e-47 |
| Msa0530380 | Msa0713220 | 0.803431 | 3.497715e-49 | -8.615850e-47 |
| Msa0530380 | Msa0713230 | 0.822364 | 2.464551e-53 | -8.615850e-47 |
| Msa0530380 | Msa0724890 | 0.809335 | 1.990513e-50 | -8.615850e-47 |
| Msa0530380 | Msa0754350 | 0.843556 | 1.303218e-58 | -8.615850e-47 |
| Msa0530380 | Msa0755080 | 0.838617 | 2.586187e-57 | -8.615850e-47 |
| Msa0530380 | Msa0755090 | 0.818416 | 1.982770e-52 | -8.615850e-47 |
| Msa0530380 | Msa0787720 | 0.818022 | 2.434546e-52 | -8.615850e-47 |
| Msa0530380 | Msa0787730 | 0.815308 | 9.880451e-52 | -8.615850e-47 |
| Msa0530380 | Msa0789270 | 0.810592 | 1.067708e-50 | -8.615850e-47 |
| Msa0530380 | Msa0789280 | 0.805497 | 1.297475e-49 | -8.615850e-47 |
| Msa0530380 | Msa0789290 | 0.806124 | 9.581575e-50 | -8.615850e-47 |
| Msa0530380 | Msa0789300 | 0.808416 | 3.130770e-50 | -8.615850e-47 |
| Msa0530380 | Msa0795890 | -0.832267 | 1.042068e-55 | -8.615850e-47 |
| Msa0530380 | Msa0796950 | 0.841131 | 5.721684e-58 | -8.615850e-47 |
| Msa0530380 | Msa0797000 | 0.834713 | 2.556525e-56 | -8.615850e-47 |
| Msa0530380 | Msa0828570 | 0.804227 | 2.390383e-49 | -8.615850e-47 |
| Msa0530380 | Msa0833670 | -0.820270 | 7.495189e-53 | -8.615850e-47 |
| Msa0530380 | Msa0834450 | 0.838080 | 3.555205e-57 | -8.615850e-47 |
| Msa0530380 | Msa0834460 | 0.824729 | 6.892103e-54 | -8.615850e-47 |
| Msa0530380 | Msa0908170 | 0.810160 | 1.323416e-50 | -8.615850e-47 |
| Msa0530380 | Msa0944730 | 0.814334 | 1.624134e-51 | -8.615850e-47 |
| Msa0530380 | Msa0945150 | 0.817353 | 3.445291e-52 | -8.615850e-47 |
| Msa0530380 | Msa0964680 | 0.800571 | 1.354020e-48 | -8.615850e-47 |
| Msa0530380 | Msa0982590 | 0.836529 | 8.873920e-57 | -8.615850e-47 |
| Msa0530380 | Msa1016110 | 0.812405 | 4.311279e-51 | -8.615850e-47 |
| Msa0530380 | Msa1037020 | 0.812387 | 4.349687e-51 | -8.615850e-47 |
| Msa0530380 | Msa1069180 | 0.800750 | 1.244826e-48 | -8.615850e-47 |
| Msa0530380 | Msa1077670 | 0.823011 | 1.742642e-53 | -8.615850e-47 |
| Msa0530380 | Msa1113200 | 0.804890 | 1.738200e-49 | -8.615850e-47 |
| Msa0530380 | Msa1120620 | 0.809991 | 1.439152e-50 | -8.615850e-47 |
| Msa0530380 | Msa1132860 | -0.831828 | 1.337482e-55 | -8.615850e-47 |
| Msa0530380 | Msa1157020 | 0.805424 | 1.344025e-49 | -8.615850e-47 |
| Msa0530380 | Msa1164530 | 0.814298 | 1.654602e-51 | -8.615850e-47 |
| Msa0530380 | Msa1177620 | 0.800022 | 1.751142e-48 | -8.615850e-47 |
| Msa0530380 | Msa1182830 | 0.811054 | 8.481910e-51 | -8.615850e-47 |
| Msa0530380 | Msa1206760 | 0.847971 | 8.248653e-60 | -8.615850e-47 |
| Msa0530380 | Msa1218650 | 0.815737 | 7.928694e-52 | -8.615850e-47 |
| Msa0530380 | Msa1242990 | 0.822211 | 2.673801e-53 | -8.615850e-47 |
| Msa0530380 | Msa1249920 | 0.813076 | 3.073195e-51 | -8.615850e-47 |
| Msa0530380 | Msa1284390 | 0.824169 | 9.337626e-54 | -8.615850e-47 |
| Msa0530380 | Msa1291350 | 0.807169 | 5.764065e-50 | -8.615850e-47 |
| Msa0530380 | Msa1306700 | 0.807521 | 4.854589e-50 | -8.615850e-47 |
| Msa0530380 | Msa1317710 | 0.810301 | 1.234083e-50 | -8.615850e-47 |
| Msa0530380 | Msa1358870 | -0.808174 | 3.524987e-50 | -8.615850e-47 |
| Msa0530380 | Msa1368980 | 0.800590 | 1.342076e-48 | -8.615850e-47 |
| Msa0530380 | Msa1383480 | 0.800647 | 1.306829e-48 | -8.615850e-47 |
| Msa0530380 | Msa1403950 | 0.800074 | 1.709380e-48 | -8.615850e-47 |
| Msa0530380 | Msa1419110 | 0.816122 | 6.508405e-52 | -8.615850e-47 |
| Msa0530380 | Msa1439230 | 0.819266 | 1.271000e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530380 | MtrunA17_Chr4g0003271 | 97.642 | 212 | 4 | 1 | 1 | 212 | 1 | 211 | 2.37e-154 | 426 |
| Msa0530380 | MtrunA17_Chr2g0333101 | 67.453 | 212 | 67 | 2 | 2 | 212 | 13 | 223 | 6.04e-102 | 294 |
| Msa0530380 | MtrunA17_Chr2g0333111 | 64.455 | 211 | 73 | 2 | 3 | 212 | 15 | 224 | 1.18e-100 | 290 |
| Msa0530380 | MtrunA17_Chr8g0387561 | 34.715 | 193 | 103 | 5 | 18 | 191 | 43 | 231 | 8.43e-26 | 100 |
| Msa0530380 | MtrunA17_Chr7g0244331 | 29.255 | 188 | 126 | 5 | 11 | 195 | 27 | 210 | 5.36e-24 | 94.7 |
| Msa0530380 | MtrunA17_Chr8g0345091 | 32.240 | 183 | 116 | 5 | 16 | 194 | 20 | 198 | 3.80e-23 | 92.0 |
| Msa0530380 | MtrunA17_Chr2g0300771 | 28.365 | 208 | 135 | 6 | 1 | 197 | 1 | 205 | 3.62e-22 | 89.7 |
| Msa0530380 | MtrunA17_Chr7g0244341 | 28.342 | 187 | 127 | 5 | 11 | 194 | 27 | 209 | 1.04e-21 | 89.0 |
| Msa0530380 | MtrunA17_Chr7g0244321 | 28.108 | 185 | 126 | 5 | 11 | 192 | 27 | 207 | 6.11e-21 | 86.7 |
| Msa0530380 | MtrunA17_Chr7g0244371 | 26.702 | 191 | 132 | 6 | 7 | 194 | 22 | 207 | 4.37e-20 | 84.3 |
| Msa0530380 | MtrunA17_Chr7g0244361 | 24.873 | 197 | 128 | 6 | 7 | 191 | 47 | 235 | 2.15e-16 | 75.1 |
| Msa0530380 | MtrunA17_Chr4g0013291 | 25.510 | 196 | 131 | 7 | 2 | 192 | 10 | 195 | 5.39e-16 | 73.2 |
| Msa0530380 | MtrunA17_Chr7g0244111 | 25.620 | 121 | 83 | 4 | 79 | 195 | 5 | 122 | 1.76e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530380 | AT3G15810.1 | 55.714 | 210 | 88 | 3 | 3 | 212 | 16 | 220 | 1.47e-80 | 240 |
| Msa0530380 | AT1G80120.1 | 61.429 | 210 | 73 | 6 | 6 | 212 | 5 | 209 | 6.17e-75 | 225 |
| Msa0530380 | AT2G38640.1 | 38.547 | 179 | 102 | 5 | 15 | 191 | 20 | 192 | 2.18e-26 | 100 |
| Msa0530380 | AT5G41590.1 | 36.559 | 186 | 103 | 8 | 18 | 191 | 37 | 219 | 2.84e-20 | 85.5 |
| Msa0530380 | AT2G05910.1 | 27.411 | 197 | 127 | 5 | 5 | 195 | 2 | 188 | 2.30e-19 | 82.4 |
| Msa0530380 | AT5G20640.1 | 29.756 | 205 | 124 | 8 | 7 | 195 | 12 | 212 | 4.14e-19 | 82.4 |
| Msa0530380 | AT3G11740.1 | 26.111 | 180 | 125 | 4 | 20 | 195 | 16 | 191 | 7.96e-18 | 78.6 |
| Msa0530380 | AT5G01750.2 | 25.389 | 193 | 137 | 5 | 6 | 195 | 26 | 214 | 1.94e-17 | 77.8 |
| Msa0530380 | AT1G53875.1 | 26.776 | 183 | 117 | 6 | 12 | 187 | 48 | 220 | 5.80e-13 | 65.9 |
Find 61 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAGTTCTTCTCTATTTA+AGG | 0.079515 | 4_1:+4455656 | Msa0530380:five_prime_UTR |
| GGTGAGAATTTCTTTGATAA+TGG | 0.240720 | 4_1:+4458942 | Msa0530380:CDS |
| CTTTGCCATGGGATTGGTTT+TGG | 0.269542 | 4_1:+4458902 | Msa0530380:CDS |
| GTGAGAATTTCTTTGATAAT+GGG | 0.336997 | 4_1:+4458943 | Msa0530380:CDS |
| ATTCATCAATCTTCTGTAGT+AGG | 0.340424 | 4_1:-4458987 | None:intergenic |
| CTCAGCCACTACTTTCTTTG+TGG | 0.350694 | 4_1:-4457770 | None:intergenic |
| GGGTGGAGAGATATTTCATT+AGG | 0.386583 | 4_1:-4455517 | None:intergenic |
| GTTTGTTGTGTATGATTGTA+AGG | 0.389745 | 4_1:+4455873 | Msa0530380:CDS |
| AAAATCTTACAGCATCTTTG+TGG | 0.417016 | 4_1:-4457742 | None:intergenic |
| TCTTCCTTATCACGTGTGTT+TGG | 0.423689 | 4_1:-4455928 | None:intergenic |
| TTACAGTTCTGAAAACATCT+AGG | 0.431194 | 4_1:+4455833 | Msa0530380:CDS |
| TGTGTCCTTTGCCATGGGAT+TGG | 0.448534 | 4_1:+4458896 | Msa0530380:CDS |
| AAATCTTACAGCATCTTTGT+GGG | 0.461184 | 4_1:-4457741 | None:intergenic |
| AAAAGAATATTTATTGAGCT+GGG | 0.463914 | 4_1:-4455556 | None:intergenic |
| TTGGTACTTGATCAGATCAA+TGG | 0.468589 | 4_1:+4458921 | Msa0530380:CDS |
| GCAAAGGACACATCAAAATC+AGG | 0.471041 | 4_1:-4458885 | None:intergenic |
| TGGACCAAACACACGTGATA+AGG | 0.488839 | 4_1:+4455924 | Msa0530380:CDS |
| TCCCATCGTTGATGAAGACT+TGG | 0.494963 | 4_1:-4457577 | None:intergenic |
| TGTGAAGATGAATAAGTTGA+AGG | 0.503415 | 4_1:-4455727 | None:intergenic |
| ATCGTGTACCTCCACTGTTA+TGG | 0.509066 | 4_1:-4457683 | None:intergenic |
| TTGGTCCATACGAGTCAAAC+CGG | 0.510635 | 4_1:-4455909 | None:intergenic |
| TTTGATGTGTCCTTTGCCAT+GGG | 0.516078 | 4_1:+4458891 | Msa0530380:CDS |
| CTGGGAAAATATTGTAAAGG+AGG | 0.523625 | 4_1:-4455538 | None:intergenic |
| TCTTCTCACCTTGCGTCGAA+AGG | 0.530749 | 4_1:+4455981 | Msa0530380:CDS |
| GAGCTGGGAAAATATTGTAA+AGG | 0.531777 | 4_1:-4455541 | None:intergenic |
| TTCATCAATCTTCTGTAGTA+GGG | 0.533840 | 4_1:-4458986 | None:intergenic |
| GGTGTGGAGTACCTCATTGA+AGG | 0.534346 | 4_1:+4457712 | Msa0530380:CDS |
| TTGAACACAAAGCATGAAAA+CGG | 0.535519 | 4_1:-4458862 | None:intergenic |
| TCAATGAGGTACTCCACACC+TGG | 0.537802 | 4_1:-4457709 | None:intergenic |
| AGGGTGCACCGAGGTTTCAA+TGG | 0.544254 | 4_1:-4458967 | None:intergenic |
| GAAAATATTGTAAAGGAGGG+TGG | 0.551890 | 4_1:-4455534 | None:intergenic |
| AGTACATACCTTTCGACGCA+AGG | 0.559877 | 4_1:-4455989 | None:intergenic |
| CAACGATGGGAAGGATTCAA+AGG | 0.560825 | 4_1:+4457589 | Msa0530380:CDS |
| TAATGCCACAAAGAAAGTAG+TGG | 0.567237 | 4_1:+4457765 | Msa0530380:CDS |
| AACCAAGTCTTCATCAACGA+TGG | 0.577300 | 4_1:+4457575 | Msa0530380:CDS |
| TTTGTTGTGTATGATTGTAA+GGG | 0.578513 | 4_1:+4455874 | Msa0530380:CDS |
| TTCAAAGGAGAGAGAAAAGA+CGG | 0.580588 | 4_1:+4457604 | Msa0530380:CDS |
| AGTGGCTGAGATTCGTCGTA+AGG | 0.580670 | 4_1:+4457783 | Msa0530380:CDS |
| ACCGAGCATAACACTAGTGG+TGG | 0.583087 | 4_1:-4457812 | None:intergenic |
| ACCAAGTCTTCATCAACGAT+GGG | 0.589490 | 4_1:+4457576 | Msa0530380:CDS |
| GGCTGAGATTCGTCGTAAGG+TGG | 0.591532 | 4_1:+4457786 | Msa0530380:CDS |
| GTGTGGAGTACCTCATTGAA+GGG | 0.603117 | 4_1:+4457713 | Msa0530380:CDS |
| CTTGTTCTTATGAACACACA+TGG | 0.616126 | 4_1:+4455952 | Msa0530380:CDS |
| TGGGAAAATATTGTAAAGGA+GGG | 0.616746 | 4_1:-4455537 | None:intergenic |
| TAATGGGACCATTGAAACCT+CGG | 0.618557 | 4_1:+4458959 | Msa0530380:CDS |
| GTGGGAAACACCCTTCAATG+AGG | 0.622701 | 4_1:-4457723 | None:intergenic |
| CCCACCACTAGTGTTATGCT+CGG | 0.625140 | 4_1:+4457811 | Msa0530380:CDS |
| AGTCTTCATCAACGATGGGA+AGG | 0.627932 | 4_1:+4457580 | Msa0530380:CDS |
| AAGTACCAAAACCAATCCCA+TGG | 0.637046 | 4_1:-4458907 | None:intergenic |
| AAAGATCATCAATAATCGCA+CGG | 0.646246 | 4_1:+4457650 | Msa0530380:CDS |
| CAAAACCAATCCCATGGCAA+AGG | 0.650353 | 4_1:-4458901 | None:intergenic |
| TTTACCGAGCATAACACTAG+TGG | 0.651825 | 4_1:-4457815 | None:intergenic |
| CGAGCATAACACTAGTGGTG+GGG | 0.652992 | 4_1:-4457810 | None:intergenic |
| CCGAGCATAACACTAGTGGT+GGG | 0.663464 | 4_1:-4457811 | None:intergenic |
| GGTACACGATAACCCAGGTG+TGG | 0.667191 | 4_1:+4457696 | Msa0530380:CDS |
| AAGAATGACCATAACAGTGG+AGG | 0.694861 | 4_1:+4457675 | Msa0530380:CDS |
| GTCAAGAATGACCATAACAG+TGG | 0.699668 | 4_1:+4457672 | Msa0530380:CDS |
| CAATGAGGTACTCCACACCT+GGG | 0.718093 | 4_1:-4457708 | None:intergenic |
| AACACAAAGCATGAAAACGG+TGG | 0.721733 | 4_1:-4458859 | None:intergenic |
| TTCTGTAGTAGGGTGCACCG+AGG | 0.725146 | 4_1:-4458976 | None:intergenic |
| GTGGAGGTACACGATAACCC+AGG | 0.734091 | 4_1:+4457691 | Msa0530380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATATTTTTTTAAGTG+TGG | - | chr4_1:4456937-4456956 | None:intergenic | 10.0% |
| !!! | ATTATTTTTAAAACTTGTAT+AGG | + | chr4_1:4457260-4457279 | Msa0530380:intron | 10.0% |
| !! | AATAACAAAAAATAAAGAAA+CGG | + | chr4_1:4458132-4458151 | Msa0530380:intron | 10.0% |
| !!! | AAATATATGTTTTAATTCTA+TGG | - | chr4_1:4458228-4458247 | None:intergenic | 10.0% |
| !!! | ATGTATTTTTAGTTTACAAT+CGG | + | chr4_1:4456512-4456531 | Msa0530380:intron | 15.0% |
| !!! | AAGATTTTTTTTATGTGAAT+CGG | - | chr4_1:4456802-4456821 | None:intergenic | 15.0% |
| !!! | TTTTAAACCATTAGATTAAA+AGG | + | chr4_1:4457912-4457931 | Msa0530380:intron | 15.0% |
| !! | ATAACAAAAAATAAAGAAAC+GGG | + | chr4_1:4458133-4458152 | Msa0530380:intron | 15.0% |
| !! | AAAAGAATATTTATTGAGCT+GGG | - | chr4_1:4455559-4455578 | None:intergenic | 20.0% |
| !! | AAAAAGAATATTTATTGAGC+TGG | - | chr4_1:4455560-4455579 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGTGCTGTAAA+GGG | - | chr4_1:4455625-4455644 | None:intergenic | 20.0% |
| !!! | TGGAAGATATATTTTGTTAT+TGG | + | chr4_1:4456424-4456443 | Msa0530380:intron | 20.0% |
| !!! | GGAAGATATATTTTGTTATT+GGG | + | chr4_1:4456425-4456444 | Msa0530380:intron | 20.0% |
| !!! | TTTTTAAAACTTGTATAGGA+AGG | + | chr4_1:4457264-4457283 | Msa0530380:intron | 20.0% |
| !!! | TTTTAAAACTTGTATAGGAA+GGG | + | chr4_1:4457265-4457284 | Msa0530380:intron | 20.0% |
| !! | AAAAGAATTAAAACATGTTG+TGG | - | chr4_1:4458313-4458332 | None:intergenic | 20.0% |
| !!! | ATAGGTGAATTTCTAAAATT+GGG | + | chr4_1:4458479-4458498 | Msa0530380:intron | 20.0% |
| !! | ATGTCGATAACTAATAAATT+AGG | + | chr4_1:4458520-4458539 | Msa0530380:intron | 20.0% |
| !! | ATCTGAAAAAATATTACTCA+TGG | + | chr4_1:4458677-4458696 | Msa0530380:intron | 20.0% |
| !!! | CTTTTTATTTTGTGCTGTAA+AGG | - | chr4_1:4455626-4455645 | None:intergenic | 25.0% |
| ! | CAATAGTTCTTCTCTATTTA+AGG | + | chr4_1:4455656-4455675 | Msa0530380:five_prime_UTR | 25.0% |
| !! | TTTGTTGTGTATGATTGTAA+GGG | + | chr4_1:4455874-4455893 | Msa0530380:CDS | 25.0% |
| !! | TTCTTTTTGTGTTCTGTAAT+TGG | + | chr4_1:4456030-4456049 | Msa0530380:intron | 25.0% |
| ! | TTTCTTGTTGAATATACAAC+TGG | + | chr4_1:4456569-4456588 | Msa0530380:intron | 25.0% |
| ! | TTGAATATACAACTGGATTT+GGG | + | chr4_1:4456576-4456595 | Msa0530380:intron | 25.0% |
| ! | ATCTTGAAAAAGAGTGATTA+AGG | - | chr4_1:4456910-4456929 | None:intergenic | 25.0% |
| !!! | ATATTGATGATGAGTTAACA+TGG | + | chr4_1:4457533-4457552 | Msa0530380:intron | 25.0% |
| ! | AAGTAAAAACGATACTGTAT+GGG | - | chr4_1:4457962-4457981 | None:intergenic | 25.0% |
| ! | AAAGTAAAAACGATACTGTA+TGG | - | chr4_1:4457963-4457982 | None:intergenic | 25.0% |
| !!! | CATAGGTGAATTTCTAAAAT+TGG | + | chr4_1:4458478-4458497 | Msa0530380:intron | 25.0% |
| ! | ATGCTAAAATCTGAAGATAT+TGG | + | chr4_1:4458553-4458572 | Msa0530380:intron | 25.0% |
| ! | TGAAAAAATATTACTCATGG+AGG | + | chr4_1:4458680-4458699 | Msa0530380:intron | 25.0% |
| !!! | AAGGAATATCGATTTTATCA+TGG | - | chr4_1:4458752-4458771 | None:intergenic | 25.0% |
| !! | GTGAGAATTTCTTTGATAAT+GGG | + | chr4_1:4458943-4458962 | Msa0530380:CDS | 25.0% |
| TGGGAAAATATTGTAAAGGA+GGG | - | chr4_1:4455540-4455559 | None:intergenic | 30.0% | |
| !! | AAACGTGTTTTTGTGCTAAA+TGG | - | chr4_1:4455583-4455602 | None:intergenic | 30.0% |
| ! | TGTGAAGATGAATAAGTTGA+AGG | - | chr4_1:4455730-4455749 | None:intergenic | 30.0% |
| ! | TAGATGTTTTCAGAACTGTA+AGG | - | chr4_1:4455834-4455853 | None:intergenic | 30.0% |
| !! | TTACAGTTCTGAAAACATCT+AGG | + | chr4_1:4455833-4455852 | Msa0530380:CDS | 30.0% |
| !! | AAAACATCTAGGTTTTTCAG+TGG | + | chr4_1:4455844-4455863 | Msa0530380:CDS | 30.0% |
| !! | GTTTGTTGTGTATGATTGTA+AGG | + | chr4_1:4455873-4455892 | Msa0530380:CDS | 30.0% |
| ACAACCAACAAAATCTGAAT+CGG | - | chr4_1:4456096-4456115 | None:intergenic | 30.0% | |
| ATCTCTGTCTTAACTAACTT+TGG | + | chr4_1:4456119-4456138 | Msa0530380:intron | 30.0% | |
| ATTAGTAACGTTGTACGAAA+AGG | - | chr4_1:4456293-4456312 | None:intergenic | 30.0% | |
| !!! | TCACACATTTTAGTTCTACA+CGG | - | chr4_1:4456327-4456346 | None:intergenic | 30.0% |
| CATATTCAAACCTAGATCTT+TGG | + | chr4_1:4456395-4456414 | Msa0530380:intron | 30.0% | |
| ACCTAGATCTTTGGTTAAAT+TGG | + | chr4_1:4456404-4456423 | Msa0530380:intron | 30.0% | |
| TCCAATTTAACCAAAGATCT+AGG | - | chr4_1:4456408-4456427 | None:intergenic | 30.0% | |
| GTTGAATATACAACTGGATT+TGG | + | chr4_1:4456575-4456594 | Msa0530380:intron | 30.0% | |
| AGATTACTATCTCAAGTGAT+AGG | - | chr4_1:4456756-4456775 | None:intergenic | 30.0% | |
| TCCTAAGATAGTGAAATCTT+GGG | - | chr4_1:4456831-4456850 | None:intergenic | 30.0% | |
| !! | GGTATGTTTGATTTGCAATT+AGG | - | chr4_1:4456884-4456903 | None:intergenic | 30.0% |
| GAAAAAGAGTGATTAAGGTA+GGG | - | chr4_1:4456905-4456924 | None:intergenic | 30.0% | |
| TGAAAAAGAGTGATTAAGGT+AGG | - | chr4_1:4456906-4456925 | None:intergenic | 30.0% | |
| TATTCCTTTGACTGAAATCA+AGG | - | chr4_1:4457139-4457158 | None:intergenic | 30.0% | |
| CTTAGTCTGTTTACCATATT+GGG | + | chr4_1:4457318-4457337 | Msa0530380:intron | 30.0% | |
| ! | GATCTTTTCACATTGAAGAT+TGG | - | chr4_1:4457637-4457656 | None:intergenic | 30.0% |
| AAAGATCATCAATAATCGCA+CGG | + | chr4_1:4457650-4457669 | Msa0530380:CDS | 30.0% | |
| AAATCTTACAGCATCTTTGT+GGG | - | chr4_1:4457744-4457763 | None:intergenic | 30.0% | |
| AAAATCTTACAGCATCTTTG+TGG | - | chr4_1:4457745-4457764 | None:intergenic | 30.0% | |
| ! | CAATGCTCCTTTTAATCTAA+TGG | - | chr4_1:4457922-4457941 | None:intergenic | 30.0% |
| ! | TAACATAGCTTGTGGTTTAT+TGG | - | chr4_1:4458055-4458074 | None:intergenic | 30.0% |
| ATATGCTTTAACATAGCTTG+TGG | - | chr4_1:4458063-4458082 | None:intergenic | 30.0% | |
| ACAAGCTATGTTAAAGCATA+TGG | + | chr4_1:4458062-4458081 | Msa0530380:intron | 30.0% | |
| !!! | TATGTTGACAGTGTTGTTTT+TGG | - | chr4_1:4458111-4458130 | None:intergenic | 30.0% |
| AACATGTTGTGGTTAATCTA+TGG | - | chr4_1:4458302-4458321 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAATCTCATACCCA+AGG | + | chr4_1:4458443-4458462 | Msa0530380:intron | 30.0% |
| ATTCACCTATGTGAAAAAAC+AGG | - | chr4_1:4458469-4458488 | None:intergenic | 30.0% | |
| AAAAATATTACTCATGGAGG+TGG | + | chr4_1:4458683-4458702 | Msa0530380:intron | 30.0% | |
| GAAGACAACATGATAAAGAA+TGG | + | chr4_1:4458705-4458724 | Msa0530380:intron | 30.0% | |
| GATATTCCTTGTTGATCTAA+CGG | + | chr4_1:4458762-4458781 | Msa0530380:intron | 30.0% | |
| AATGCACAAATTTGTGTACA+TGG | - | chr4_1:4458825-4458844 | None:intergenic | 30.0% | |
| TTGAACACAAAGCATGAAAA+CGG | - | chr4_1:4458865-4458884 | None:intergenic | 30.0% | |
| GGTGAGAATTTCTTTGATAA+TGG | + | chr4_1:4458942-4458961 | Msa0530380:CDS | 30.0% | |
| GAAAATATTGTAAAGGAGGG+TGG | - | chr4_1:4455537-4455556 | None:intergenic | 35.0% | |
| CTGGGAAAATATTGTAAAGG+AGG | - | chr4_1:4455541-4455560 | None:intergenic | 35.0% | |
| GAGCTGGGAAAATATTGTAA+AGG | - | chr4_1:4455544-4455563 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGAACTGTAAGGT+TGG | - | chr4_1:4455830-4455849 | None:intergenic | 35.0% |
| CTTGTTCTTATGAACACACA+TGG | + | chr4_1:4455952-4455971 | Msa0530380:CDS | 35.0% | |
| GTACGAAAAGGATATCTAGT+TGG | - | chr4_1:4456281-4456300 | None:intergenic | 35.0% | |
| ATATACAACTGGATTTGGGA+TGG | + | chr4_1:4456580-4456599 | Msa0530380:intron | 35.0% | |
| TATGGGTTCAAATCTAGTGT+TGG | + | chr4_1:4456680-4456699 | Msa0530380:intron | 35.0% | |
| CCTAAGATAGTGAAATCTTG+GGG | - | chr4_1:4456830-4456849 | None:intergenic | 35.0% | |
| GTCCTAAGATAGTGAAATCT+TGG | - | chr4_1:4456832-4456851 | None:intergenic | 35.0% | |
| AAACTGTTCACGCAACTAAA+CGG | - | chr4_1:4456854-4456873 | None:intergenic | 35.0% | |
| GCTTAGTCTGTTTACCATAT+TGG | + | chr4_1:4457317-4457336 | Msa0530380:intron | 35.0% | |
| TTCAAAGGAGAGAGAAAAGA+CGG | + | chr4_1:4457604-4457623 | Msa0530380:CDS | 35.0% | |
| TAATGCCACAAAGAAAGTAG+TGG | + | chr4_1:4457765-4457784 | Msa0530380:CDS | 35.0% | |
| ! | CTCGGTAAAGAAGTTTTCAT+GGG | + | chr4_1:4457829-4457848 | Msa0530380:intron | 35.0% |
| !! | GACTTTCTTTAACTTGTGTG+TGG | - | chr4_1:4457890-4457909 | None:intergenic | 35.0% |
| AAAATAGTGAGATGGAAGAG+AGG | - | chr4_1:4457994-4458013 | None:intergenic | 35.0% | |
| AGTTGTGTTCTTGCTGAATT+TGG | - | chr4_1:4458169-4458188 | None:intergenic | 35.0% | |
| ACACGAAACTTCGACATTAA+TGG | - | chr4_1:4458385-4458404 | None:intergenic | 35.0% | |
| TATGTGAAAAAACAGGCCTT+GGG | - | chr4_1:4458462-4458481 | None:intergenic | 35.0% | |
| CACTATAGTTTAGAGAGAGA+AGG | - | chr4_1:4458608-4458627 | None:intergenic | 35.0% | |
| !!! | AGCTTCTGGTCTTTTTTCTT+TGG | + | chr4_1:4458635-4458654 | Msa0530380:intron | 35.0% |
| TGGAAAAAATGTAGTACAGC+TGG | + | chr4_1:4458725-4458744 | Msa0530380:intron | 35.0% | |
| TTGGTACTTGATCAGATCAA+TGG | + | chr4_1:4458921-4458940 | Msa0530380:CDS | 35.0% | |
| GGGTGGAGAGATATTTCATT+AGG | - | chr4_1:4455520-4455539 | None:intergenic | 40.0% | |
| !! | TCTAGGTTTTTCAGTGGTGA+TGG | + | chr4_1:4455850-4455869 | Msa0530380:CDS | 40.0% |
| !! | CTAGGTTTTTCAGTGGTGAT+GGG | + | chr4_1:4455851-4455870 | Msa0530380:CDS | 40.0% |
| TCTTCCTTATCACGTGTGTT+TGG | - | chr4_1:4455931-4455950 | None:intergenic | 40.0% | |
| !!! | CTCACCGATTCAGATTTTGT+TGG | + | chr4_1:4456089-4456108 | Msa0530380:intron | 40.0% |
| TCCAACTGATCGAGCAATTA+TGG | + | chr4_1:4456662-4456681 | Msa0530380:intron | 40.0% | |
| CCAACTGATCGAGCAATTAT+GGG | + | chr4_1:4456663-4456682 | Msa0530380:intron | 40.0% | |
| CCCCAAGATTTCACTATCTT+AGG | + | chr4_1:4456827-4456846 | Msa0530380:intron | 40.0% | |
| TGCACCTTGATTTCAGTCAA+AGG | + | chr4_1:4457132-4457151 | Msa0530380:intron | 40.0% | |
| TTAGTCCCCTCAATTACCAT+GGG | + | chr4_1:4457289-4457308 | Msa0530380:intron | 40.0% | |
| CTGTTTACCATATTGGGCAT+AGG | + | chr4_1:4457324-4457343 | Msa0530380:intron | 40.0% | |
| AACCAAGTCTTCATCAACGA+TGG | + | chr4_1:4457575-4457594 | Msa0530380:CDS | 40.0% | |
| ACCAAGTCTTCATCAACGAT+GGG | + | chr4_1:4457576-4457595 | Msa0530380:CDS | 40.0% | |
| GTCAAGAATGACCATAACAG+TGG | + | chr4_1:4457672-4457691 | Msa0530380:CDS | 40.0% | |
| AAGAATGACCATAACAGTGG+AGG | + | chr4_1:4457675-4457694 | Msa0530380:CDS | 40.0% | |
| TTTACCGAGCATAACACTAG+TGG | - | chr4_1:4457818-4457837 | None:intergenic | 40.0% | |
| ! | GCTCGGTAAAGAAGTTTTCA+TGG | + | chr4_1:4457828-4457847 | Msa0530380:intron | 40.0% |
| ! | GGTAAAGAAGTTTTCATGGG+TGG | + | chr4_1:4457832-4457851 | Msa0530380:intron | 40.0% |
| ! | CTGGGTTGAAAATAGTGAGA+TGG | - | chr4_1:4458002-4458021 | None:intergenic | 40.0% |
| TGTAGTCTGTACTGTAGTCT+GGG | - | chr4_1:4458020-4458039 | None:intergenic | 40.0% | |
| ! | AGCTTGTGGTTTATTGGTTG+CGG | - | chr4_1:4458049-4458068 | None:intergenic | 40.0% |
| ATGGACCACAACATGAAGAT+CGG | + | chr4_1:4458081-4458100 | Msa0530380:intron | 40.0% | |
| TCTAACAACGAAGAACACAG+TGG | - | chr4_1:4458255-4458274 | None:intergenic | 40.0% | |
| ! | GACATTAATGGCGGAAACAA+AGG | - | chr4_1:4458373-4458392 | None:intergenic | 40.0% |
| CGAAACTTCGACATTAATGG+CGG | - | chr4_1:4458382-4458401 | None:intergenic | 40.0% | |
| CTATGTGAAAAAACAGGCCT+TGG | - | chr4_1:4458463-4458482 | None:intergenic | 40.0% | |
| !!! | CAAGGCCTGTTTTTTCACAT+AGG | + | chr4_1:4458461-4458480 | Msa0530380:intron | 40.0% |
| TATAGTGAGAGAGTAGCTTC+TGG | + | chr4_1:4458621-4458640 | Msa0530380:intron | 40.0% | |
| TGTACACCGTTAGATCAACA+AGG | - | chr4_1:4458771-4458790 | None:intergenic | 40.0% | |
| AACACAAAGCATGAAAACGG+TGG | - | chr4_1:4458862-4458881 | None:intergenic | 40.0% | |
| GCAAAGGACACATCAAAATC+AGG | - | chr4_1:4458888-4458907 | None:intergenic | 40.0% | |
| ! | TTTTGATGTGTCCTTTGCCA+TGG | + | chr4_1:4458890-4458909 | Msa0530380:CDS | 40.0% |
| TTTGATGTGTCCTTTGCCAT+GGG | + | chr4_1:4458891-4458910 | Msa0530380:CDS | 40.0% | |
| AAGTACCAAAACCAATCCCA+TGG | - | chr4_1:4458910-4458929 | None:intergenic | 40.0% | |
| TAATGGGACCATTGAAACCT+CGG | + | chr4_1:4458959-4458978 | Msa0530380:CDS | 40.0% | |
| ! | GTAAGGGACAACTCGTTTTC+CGG | + | chr4_1:4455890-4455909 | Msa0530380:CDS | 45.0% |
| !! | GTTTTCCGGTTTGACTCGTA+TGG | + | chr4_1:4455904-4455923 | Msa0530380:CDS | 45.0% |
| TTGGTCCATACGAGTCAAAC+CGG | - | chr4_1:4455912-4455931 | None:intergenic | 45.0% | |
| TGGACCAAACACACGTGATA+AGG | + | chr4_1:4455924-4455943 | Msa0530380:CDS | 45.0% | |
| AGTACATACCTTTCGACGCA+AGG | - | chr4_1:4455992-4456011 | None:intergenic | 45.0% | |
| CCCATAATTGCTCGATCAGT+TGG | - | chr4_1:4456666-4456685 | None:intergenic | 45.0% | |
| AGTTGCGTGAACAGTTTGAG+AGG | + | chr4_1:4456857-4456876 | Msa0530380:intron | 45.0% | |
| CTTAGTCCCCTCAATTACCA+TGG | + | chr4_1:4457288-4457307 | Msa0530380:intron | 45.0% | |
| CTCTTAGCCTATGCCCAATA+TGG | - | chr4_1:4457334-4457353 | None:intergenic | 45.0% | |
| ! | TCCCATCGTTGATGAAGACT+TGG | - | chr4_1:4457580-4457599 | None:intergenic | 45.0% |
| AGTCTTCATCAACGATGGGA+AGG | + | chr4_1:4457580-4457599 | Msa0530380:CDS | 45.0% | |
| CAACGATGGGAAGGATTCAA+AGG | + | chr4_1:4457589-4457608 | Msa0530380:CDS | 45.0% | |
| ATCGTGTACCTCCACTGTTA+TGG | - | chr4_1:4457686-4457705 | None:intergenic | 45.0% | |
| ! | GTGTGGAGTACCTCATTGAA+GGG | + | chr4_1:4457713-4457732 | Msa0530380:CDS | 45.0% |
| CTCAGCCACTACTTTCTTTG+TGG | - | chr4_1:4457773-4457792 | None:intergenic | 45.0% | |
| CTGTAGTCTGTACTGTAGTC+TGG | - | chr4_1:4458021-4458040 | None:intergenic | 45.0% | |
| ! | GCTTGTGGTTTATTGGTTGC+GGG | - | chr4_1:4458048-4458067 | None:intergenic | 45.0% |
| TGGACCACAACATGAAGATC+GGG | + | chr4_1:4458082-4458101 | Msa0530380:intron | 45.0% | |
| CAAAACCAATCCCATGGCAA+AGG | - | chr4_1:4458904-4458923 | None:intergenic | 45.0% | |
| !!! | CTTTGCCATGGGATTGGTTT+TGG | + | chr4_1:4458902-4458921 | Msa0530380:CDS | 45.0% |
| !! | AAAAAATTATTATACATATT+TGG | + | chr4_1:4456227-4456246 | Msa0530380:intron | 5.0% |
| !! | AAATTAAATAAATATGTTAT+TGG | - | chr4_1:4456552-4456571 | None:intergenic | 5.0% |
| TCTTCTCACCTTGCGTCGAA+AGG | + | chr4_1:4455981-4456000 | Msa0530380:CDS | 50.0% | |
| CACCACCCATGGTAATTGAG+GGG | - | chr4_1:4457297-4457316 | None:intergenic | 50.0% | |
| CCACCACCCATGGTAATTGA+GGG | - | chr4_1:4457298-4457317 | None:intergenic | 50.0% | |
| GCACAAGACGCACTAAGGAA+AGG | - | chr4_1:4457420-4457439 | None:intergenic | 50.0% | |
| TCCTTAGTGCGTCTTGTGCT+AGG | + | chr4_1:4457421-4457440 | Msa0530380:intron | 50.0% | |
| CCTTAGTGCGTCTTGTGCTA+GGG | + | chr4_1:4457422-4457441 | Msa0530380:intron | 50.0% | |
| ! | CAATGAGGTACTCCACACCT+GGG | - | chr4_1:4457711-4457730 | None:intergenic | 50.0% |
| ! | TCAATGAGGTACTCCACACC+TGG | - | chr4_1:4457712-4457731 | None:intergenic | 50.0% |
| ! | GGTGTGGAGTACCTCATTGA+AGG | + | chr4_1:4457712-4457731 | Msa0530380:CDS | 50.0% |
| GTGGGAAACACCCTTCAATG+AGG | - | chr4_1:4457726-4457745 | None:intergenic | 50.0% | |
| AGTGGCTGAGATTCGTCGTA+AGG | + | chr4_1:4457783-4457802 | Msa0530380:CDS | 50.0% | |
| CGAGCATAACACTAGTGGTG+GGG | - | chr4_1:4457813-4457832 | None:intergenic | 50.0% | |
| CCGAGCATAACACTAGTGGT+GGG | - | chr4_1:4457814-4457833 | None:intergenic | 50.0% | |
| CCCACCACTAGTGTTATGCT+CGG | + | chr4_1:4457811-4457830 | Msa0530380:CDS | 50.0% | |
| ACCGAGCATAACACTAGTGG+TGG | - | chr4_1:4457815-4457834 | None:intergenic | 50.0% | |
| GACTCCCGATCTTCATGTTG+TGG | - | chr4_1:4458089-4458108 | None:intergenic | 50.0% | |
| TGTGTCCTTTGCCATGGGAT+TGG | + | chr4_1:4458896-4458915 | Msa0530380:CDS | 50.0% | |
| GTCCCCTCAATTACCATGGG+TGG | + | chr4_1:4457292-4457311 | Msa0530380:intron | 55.0% | |
| CCCTCAATTACCATGGGTGG+TGG | + | chr4_1:4457295-4457314 | Msa0530380:intron | 55.0% | |
| GCCACCACCCATGGTAATTG+AGG | - | chr4_1:4457299-4457318 | None:intergenic | 55.0% | |
| ACAGACTAAGCCACCACCCA+TGG | - | chr4_1:4457308-4457327 | None:intergenic | 55.0% | |
| CCCTAGCACAAGACGCACTA+AGG | - | chr4_1:4457425-4457444 | None:intergenic | 55.0% | |
| ! | GTGGAGGTACACGATAACCC+AGG | + | chr4_1:4457691-4457710 | Msa0530380:CDS | 55.0% |
| GGTACACGATAACCCAGGTG+TGG | + | chr4_1:4457696-4457715 | Msa0530380:CDS | 55.0% | |
| GGCTGAGATTCGTCGTAAGG+TGG | + | chr4_1:4457786-4457805 | Msa0530380:CDS | 55.0% | |
| AGGGTGCACCGAGGTTTCAA+TGG | - | chr4_1:4458970-4458989 | None:intergenic | 55.0% | |
| TTCTGTAGTAGGGTGCACCG+AGG | - | chr4_1:4458979-4458998 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4455514 | 4459004 | 4455514 | ID=Msa0530380;Name=Msa0530380 |
| chr4_1 | mRNA | 4455514 | 4459004 | 4455514 | ID=Msa0530380-mRNA-1;Parent=Msa0530380;Name=Msa0530380-mRNA-1;_AED=0.29;_eAED=0.29;_QI=261|0.5|0.33|1|1|1|3|0|212 |
| chr4_1 | exon | 4455514 | 4456002 | 4455514 | ID=Msa0530380-mRNA-1:exon:1353;Parent=Msa0530380-mRNA-1 |
| chr4_1 | exon | 4457574 | 4457832 | 4457574 | ID=Msa0530380-mRNA-1:exon:1354;Parent=Msa0530380-mRNA-1 |
| chr4_1 | exon | 4458853 | 4459004 | 4458853 | ID=Msa0530380-mRNA-1:exon:1355;Parent=Msa0530380-mRNA-1 |
| chr4_1 | five_prime_UTR | 4455514 | 4455774 | 4455514 | ID=Msa0530380-mRNA-1:five_prime_utr;Parent=Msa0530380-mRNA-1 |
| chr4_1 | CDS | 4455775 | 4456002 | 4455775 | ID=Msa0530380-mRNA-1:cds;Parent=Msa0530380-mRNA-1 |
| chr4_1 | CDS | 4457574 | 4457832 | 4457574 | ID=Msa0530380-mRNA-1:cds;Parent=Msa0530380-mRNA-1 |
| chr4_1 | CDS | 4458853 | 4459004 | 4458853 | ID=Msa0530380-mRNA-1:cds;Parent=Msa0530380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
