Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621900 | XP_013458482.1 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621900 | sp|Q9LTS3|CKX3_ARATH | 56.911 | 492 | 205 | 3 | 35 | 526 | 35 | 519 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621900 | A0A072UTW0 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621900 | Msa1156180 | 0.803622 | 3.193565e-49 | -8.615850e-47 |
| Msa0621900 | Msa1220360 | 0.927033 | 2.064085e-91 | -8.615850e-47 |
| Msa0621900 | Msa1265950 | 0.983730 | 1.508121e-158 | -8.615850e-47 |
| Msa0621900 | Msa1431010 | 0.992169 | 1.057662e-191 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621900 | MtrunA17_Chr4g0071111 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Msa0621900 | MtrunA17_Chr2g0299371 | 70.037 | 544 | 138 | 9 | 1 | 525 | 1 | 538 | 0.0 | 775 |
| Msa0621900 | MtrunA17_Chr4g0071121 | 57.062 | 531 | 209 | 6 | 1 | 525 | 1 | 518 | 0.0 | 620 |
| Msa0621900 | MtrunA17_Chr3g0141981 | 49.808 | 522 | 241 | 11 | 12 | 525 | 15 | 523 | 2.72e-170 | 492 |
| Msa0621900 | MtrunA17_Chr4g0020621 | 49.383 | 486 | 224 | 10 | 51 | 526 | 50 | 523 | 8.03e-164 | 475 |
| Msa0621900 | MtrunA17_Chr3g0091141 | 49.585 | 482 | 224 | 10 | 51 | 526 | 74 | 542 | 9.45e-162 | 471 |
| Msa0621900 | MtrunA17_Chr7g0257061 | 48.428 | 477 | 227 | 8 | 58 | 526 | 73 | 538 | 5.31e-160 | 466 |
| Msa0621900 | MtrunA17_Chr1g0150941 | 40.519 | 501 | 276 | 10 | 36 | 526 | 17 | 505 | 6.96e-132 | 393 |
| Msa0621900 | MtrunA17_Chr2g0299361 | 52.778 | 324 | 129 | 4 | 206 | 524 | 6 | 310 | 1.12e-119 | 354 |
| Msa0621900 | MtrunA17_Chr2g0299351 | 61.176 | 170 | 61 | 2 | 44 | 209 | 37 | 205 | 7.80e-60 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621900 | AT5G56970.1 | 56.911 | 492 | 205 | 3 | 35 | 526 | 35 | 519 | 0.0 | 588 |
| Msa0621900 | AT4G29740.2 | 50.189 | 528 | 238 | 9 | 11 | 525 | 9 | 524 | 0.0 | 522 |
| Msa0621900 | AT1G75450.1 | 49.905 | 529 | 236 | 10 | 9 | 524 | 8 | 520 | 1.68e-180 | 518 |
| Msa0621900 | AT1G75450.2 | 49.718 | 531 | 237 | 11 | 9 | 525 | 4 | 518 | 1.16e-178 | 513 |
| Msa0621900 | AT2G19500.1 | 48.269 | 520 | 237 | 6 | 13 | 524 | 6 | 501 | 3.80e-172 | 496 |
| Msa0621900 | AT3G63440.1 | 47.170 | 477 | 236 | 6 | 58 | 526 | 60 | 528 | 1.06e-160 | 468 |
| Msa0621900 | AT2G41510.1 | 47.699 | 478 | 227 | 9 | 59 | 526 | 77 | 541 | 1.62e-160 | 469 |
| Msa0621900 | AT2G41510.2 | 47.599 | 479 | 228 | 9 | 58 | 526 | 138 | 603 | 1.06e-159 | 469 |
| Msa0621900 | AT5G56970.2 | 55.051 | 396 | 171 | 3 | 35 | 430 | 35 | 423 | 1.46e-153 | 445 |
| Msa0621900 | AT5G21482.1 | 44.764 | 487 | 239 | 10 | 57 | 526 | 49 | 522 | 1.40e-139 | 413 |
| Msa0621900 | AT4G29740.1 | 50.000 | 432 | 192 | 8 | 11 | 430 | 9 | 428 | 1.61e-139 | 410 |
| Msa0621900 | AT2G41510.3 | 48.936 | 376 | 178 | 7 | 58 | 430 | 76 | 440 | 8.08e-123 | 367 |
| Msa0621900 | AT4G29740.3 | 50.000 | 342 | 147 | 8 | 11 | 340 | 9 | 338 | 2.58e-102 | 312 |
Find 104 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCAATATTTGAGATTT+TGG | 0.091010 | 4_2:-74225545 | None:intergenic |
| ACTCAAGTGGATTTGATAAT+TGG | 0.142815 | 4_2:+74225861 | Msa0621900:CDS |
| AGAGGATCTCCAATTATTTA+TGG | 0.156095 | 4_2:-74224892 | None:intergenic |
| ATGGACTTGCACCTGTTTCT+TGG | 0.217615 | 4_2:+74221576 | Msa0621900:CDS |
| GTTATTAAAGAAGCTATTCT+AGG | 0.268705 | 4_2:-74224939 | None:intergenic |
| CTTGGAGGTTTAGGACAATT+TGG | 0.270154 | 4_2:+74223358 | Msa0621900:CDS |
| AGTTATTAGTAGTATGAAAT+AGG | 0.276115 | 4_2:-74221114 | None:intergenic |
| CACTAAATGGAAGAGTTTCT+TGG | 0.279225 | 4_2:+74226000 | Msa0621900:CDS |
| CATACCAAAATCTCAAATAT+TGG | 0.281178 | 4_2:+74225541 | Msa0621900:CDS |
| GATTAACCGTTCCTGATCTT+TGG | 0.286822 | 4_2:-74224811 | None:intergenic |
| CACGCGGTTCTTGGAGGTTT+AGG | 0.307047 | 4_2:+74223349 | Msa0621900:CDS |
| GTTATGGAGTTTGGTTGATA+TGG | 0.310768 | 4_2:-74221216 | None:intergenic |
| TTTAGGGTCGTTATGGAGTT+TGG | 0.311295 | 4_2:-74221225 | None:intergenic |
| TGATCATCAATCCGAGAAAA+TGG | 0.314927 | 4_2:+74225004 | Msa0621900:CDS |
| AACAAGGCTCCATAAATAAT+TGG | 0.334966 | 4_2:+74224883 | Msa0621900:CDS |
| GAGTTATATCACGCGGTTCT+TGG | 0.336072 | 4_2:+74223340 | Msa0621900:CDS |
| TGGACTTCATTATGAGAAAA+AGG | 0.342313 | 4_2:+74225421 | Msa0621900:CDS |
| AAAATTGCTTCTAGTGACTA+TGG | 0.343388 | 4_2:+74221254 | Msa0621900:CDS |
| AATCACCAACGTTCATGAAT+TGG | 0.351836 | 4_2:+74221679 | Msa0621900:CDS |
| CTTTCCAATGCTGGAATTAG+TGG | 0.355413 | 4_2:+74221632 | Msa0621900:CDS |
| CATGAATTGGATGTGATTAC+TGG | 0.369964 | 4_2:+74221692 | Msa0621900:CDS |
| GTCTTTGAACACCCTTTGAT+TGG | 0.390776 | 4_2:+74221491 | Msa0621900:CDS |
| ATAATGAAGTCCAGGGATAT+AGG | 0.394085 | 4_2:-74225411 | None:intergenic |
| TCTTCTTGTGTGCTGTGGTT+AGG | 0.411365 | 4_2:-74225959 | None:intergenic |
| ATTGGTTACTATGTTGATGT+TGG | 0.419823 | 4_2:+74221509 | Msa0621900:CDS |
| AGTGGTCAGACGTTTCTTTA+CGG | 0.421013 | 4_2:+74221650 | Msa0621900:CDS |
| GCAGTAGATAATGCTGTGTT+TGG | 0.425996 | 4_2:-74224961 | None:intergenic |
| ATGTTGGAGGAGAACAACTA+TGG | 0.426776 | 4_2:+74221525 | Msa0621900:CDS |
| AGATAATCAGTCCAAGAAAC+AGG | 0.436827 | 4_2:-74221587 | None:intergenic |
| TCATGAACGTTGGTGATTTG+AGG | 0.440824 | 4_2:-74221674 | None:intergenic |
| TTCCTACGGTGGATATCAAA+CGG | 0.445255 | 4_2:-74221142 | None:intergenic |
| CATAATATGTAGCAAATTCA+AGG | 0.448202 | 4_2:-74224983 | None:intergenic |
| AGTCATGGCTTGTCCATTAG+TGG | 0.449428 | 4_2:-74221405 | None:intergenic |
| TCCTACGGTGGATATCAAAC+GGG | 0.453698 | 4_2:-74221141 | None:intergenic |
| CAGTATAACCGTACCGTTGT+GGG | 0.463521 | 4_2:-74223418 | None:intergenic |
| ACCACAGCACACAAGAAGAT+TGG | 0.465569 | 4_2:+74225963 | Msa0621900:CDS |
| AACCGTACCGTTGTGGGAGC+TGG | 0.467417 | 4_2:-74223412 | None:intergenic |
| GCTTCAGAAAACAAAGAAAA+GGG | 0.468438 | 4_2:+74221456 | Msa0621900:CDS |
| ATTATGTCTTGTATAGAAGA+TGG | 0.477377 | 4_2:-74221314 | None:intergenic |
| GTGTTAACATTGGCTAGCTC+TGG | 0.478418 | 4_2:-74221194 | None:intergenic |
| TCCAATCTTCTTGTGTGCTG+TGG | 0.478791 | 4_2:-74225964 | None:intergenic |
| AGCTTCAGAAAACAAAGAAA+AGG | 0.480651 | 4_2:+74221455 | Msa0621900:CDS |
| GGGCAAGGTCACTCCACTAA+TGG | 0.480811 | 4_2:+74221392 | Msa0621900:CDS |
| CATCACCAGTGGAACTGTCT+TGG | 0.486622 | 4_2:+74225607 | Msa0621900:CDS |
| GAACGGTTAATCTCAATCAA+TGG | 0.491339 | 4_2:+74224822 | Msa0621900:CDS |
| GGAGGAACACTTTCCAATGC+TGG | 0.491967 | 4_2:+74221623 | Msa0621900:CDS |
| TCCAGGTGATAAAATCATCC+TGG | 0.493495 | 4_2:-74226044 | None:intergenic |
| TTCTAGGATGGTCAGATTGA+GGG | 0.495813 | 4_2:-74224923 | None:intergenic |
| AGCTTCAGTCACAAGGATTG+TGG | 0.497703 | 4_2:+74225489 | Msa0621900:CDS |
| GAGGATGTCTTCTACACAGT+TGG | 0.497926 | 4_2:+74225830 | Msa0621900:CDS |
| AGTGGAGTGACCTTGCCCTC+TGG | 0.499286 | 4_2:-74221387 | None:intergenic |
| TATCTTTACCTGACGGTTGG+AGG | 0.504841 | 4_2:+74221605 | Msa0621900:CDS |
| GGTATGAATAAATTAAGCCA+TGG | 0.512499 | 4_2:-74225524 | None:intergenic |
| GCTTCAGTCACAAGGATTGT+GGG | 0.515662 | 4_2:+74225490 | Msa0621900:CDS |
| ATTCTAGGATGGTCAGATTG+AGG | 0.517004 | 4_2:-74224924 | None:intergenic |
| GATTATCTTTACCTGACGGT+TGG | 0.521491 | 4_2:+74221602 | Msa0621900:CDS |
| TGTGGGAAGTTCCTCACCCA+TGG | 0.522276 | 4_2:+74225507 | Msa0621900:CDS |
| GGTTACTATGTTGATGTTGG+AGG | 0.524528 | 4_2:+74221512 | Msa0621900:CDS |
| AAAGTGTTCCTCCAACCGTC+AGG | 0.525441 | 4_2:-74221613 | None:intergenic |
| CAACATAGTAACCAATCAAA+GGG | 0.525726 | 4_2:-74221502 | None:intergenic |
| GACTGATTATCTTTACCTGA+CGG | 0.526021 | 4_2:+74221598 | Msa0621900:CDS |
| TGGCATGTATACAGGTTAAG+TGG | 0.526926 | 4_2:+74224754 | Msa0621900:intron |
| GGACAAGCCATGACTCATGA+TGG | 0.533340 | 4_2:+74221413 | Msa0621900:CDS |
| TTAAATCCAGGTGGGACGAT+AGG | 0.539047 | 4_2:+74225786 | Msa0621900:intron |
| GTTGGATTCTTACACTCAAG+TGG | 0.539696 | 4_2:+74225848 | Msa0621900:CDS |
| TCAACATAGTAACCAATCAA+AGG | 0.543035 | 4_2:-74221503 | None:intergenic |
| GTGTAGAAGACATCCTCGTT+TGG | 0.543503 | 4_2:-74225824 | None:intergenic |
| GGTTGATATGGTGTTAACAT+TGG | 0.549802 | 4_2:-74221204 | None:intergenic |
| CTGACCACTAATTCCAGCAT+TGG | 0.549832 | 4_2:-74221636 | None:intergenic |
| TTAACATTGGCTAGCTCTGG+TGG | 0.549917 | 4_2:-74221191 | None:intergenic |
| TTATATCACGCGGTTCTTGG+AGG | 0.553109 | 4_2:+74223343 | Msa0621900:CDS |
| GGTTAATCTCAATCAATGGA+AGG | 0.556622 | 4_2:+74224826 | Msa0621900:CDS |
| GACAATTTGGAGTTATAACA+AGG | 0.558388 | 4_2:+74223371 | Msa0621900:CDS |
| TTAAAGAAGCTATTCTAGGA+TGG | 0.561768 | 4_2:-74224935 | None:intergenic |
| GTATGAATAAATTAAGCCAT+GGG | 0.562092 | 4_2:-74225523 | None:intergenic |
| CAAGGACTAGCCTATATCCC+TGG | 0.572971 | 4_2:+74225401 | Msa0621900:CDS |
| ACTATAGCAGCCAGAGGGCA+AGG | 0.575490 | 4_2:+74221377 | Msa0621900:CDS |
| CCAGGTGATAAAATCATCCT+GGG | 0.575746 | 4_2:-74226043 | None:intergenic |
| CCTCTGGCTGCTATAGTGAA+AGG | 0.577125 | 4_2:-74221371 | None:intergenic |
| GTTAATCTCAATCAATGGAA+GGG | 0.578188 | 4_2:+74224827 | Msa0621900:CDS |
| AGATTGAGGGAAGAAATTAG+AGG | 0.583674 | 4_2:-74224910 | None:intergenic |
| GAGTTGAAGCTTCAGTCACA+AGG | 0.583991 | 4_2:+74225482 | Msa0621900:CDS |
| TACAATTCCATCATGAGTCA+TGG | 0.584996 | 4_2:-74221420 | None:intergenic |
| TTGTATGCAACTCTTGAACA+TGG | 0.595290 | 4_2:+74221557 | Msa0621900:CDS |
| ACAAGCACAAGTTTGATCCC+AGG | 0.598194 | 4_2:+74226026 | Msa0621900:CDS |
| CACATCCAATTCATGAACGT+TGG | 0.600239 | 4_2:-74221684 | None:intergenic |
| AATAAATTAAGCCATGGGTG+AGG | 0.606021 | 4_2:-74225518 | None:intergenic |
| GTAAACCAAGACAGTTCCAC+TGG | 0.612320 | 4_2:-74225612 | None:intergenic |
| TTCTTGAATAGAGTCCGAAG+TGG | 0.613739 | 4_2:+74225458 | Msa0621900:CDS |
| TCAGTATAACCGTACCGTTG+TGG | 0.626101 | 4_2:-74223419 | None:intergenic |
| ATCCGAGAAAATGGTGGACA+AGG | 0.628901 | 4_2:+74225013 | Msa0621900:CDS |
| CTTCAGAAAACAAAGAAAAG+GGG | 0.634602 | 4_2:+74221457 | Msa0621900:CDS |
| ATTAAAAGAAACATCACCAG+TGG | 0.637357 | 4_2:+74225596 | Msa0621900:CDS |
| GAAGCTTCAACTCTCCACTT+CGG | 0.640974 | 4_2:-74225472 | None:intergenic |
| ACAATTTGGAGTTATAACAA+GGG | 0.641357 | 4_2:+74223372 | Msa0621900:CDS |
| TCATCAATCCGAGAAAATGG+TGG | 0.643829 | 4_2:+74225007 | Msa0621900:CDS |
| GGGATGCTGCTAATGCAACA+AGG | 0.647362 | 4_2:+74224867 | Msa0621900:CDS |
| CTTTCACTATAGCAGCCAGA+GGG | 0.652699 | 4_2:+74221372 | Msa0621900:CDS |
| CCTTTCACTATAGCAGCCAG+AGG | 0.655121 | 4_2:+74221371 | Msa0621900:CDS |
| GAATTCAGAGTTATATCACG+CGG | 0.664876 | 4_2:+74223333 | Msa0621900:CDS |
| TCTTCAGCCAGCTCCCACAA+CGG | 0.665337 | 4_2:+74223405 | Msa0621900:CDS |
| TGATGGAATTGTAGTTGACA+TGG | 0.672980 | 4_2:+74221430 | Msa0621900:CDS |
| ACCCGTTTGATATCCACCGT+AGG | 0.704257 | 4_2:+74221140 | Msa0621900:CDS |
| GTCAGCAATGATACCAAACG+AGG | 0.778680 | 4_2:+74225811 | Msa0621900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr4_2:74222712-74222731 | None:intergenic | 0.0% |
| !!! | TATTTTTATCTTAAAAAGAA+AGG | + | chr4_2:74222831-74222850 | Msa0621900:intron | 10.0% |
| !!! | ATTTTTATCTTAAAAAGAAA+GGG | + | chr4_2:74222832-74222851 | Msa0621900:intron | 10.0% |
| !!! | TAAAGTTTAATTTTATCATT+GGG | + | chr4_2:74225199-74225218 | Msa0621900:intron | 10.0% |
| !!! | AAAAAATATATTTTATCTTC+TGG | - | chr4_2:74225270-74225289 | None:intergenic | 10.0% |
| !!! | ATTGTATGAGATTTTAATTA+AGG | - | chr4_2:74221342-74221361 | None:intergenic | 15.0% |
| !!! | AAATATTTCACACTAATTTT+TGG | + | chr4_2:74221847-74221866 | Msa0621900:intron | 15.0% |
| !!! | TATAATCAGCTTTTTTTTAA+TGG | + | chr4_2:74222104-74222123 | Msa0621900:intron | 15.0% |
| !! | AATTAAAAAATTGAAGTCTT+GGG | - | chr4_2:74222178-74222197 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTAATTCAAACA+AGG | + | chr4_2:74222184-74222203 | Msa0621900:intron | 15.0% |
| !! | ACAAATAATTAATTAAGACT+TGG | - | chr4_2:74223116-74223135 | None:intergenic | 15.0% |
| !!! | TTTCTTAAGTTTTTTCTATA+TGG | - | chr4_2:74223146-74223165 | None:intergenic | 15.0% |
| !! | ATTTAATTGAATAATAGTTG+TGG | + | chr4_2:74223246-74223265 | Msa0621900:intron | 15.0% |
| !! | TATACTTTAGTTAAAAAGTA+TGG | - | chr4_2:74223631-74223650 | None:intergenic | 15.0% |
| !! | ATTCACAAATGAATATATAT+AGG | + | chr4_2:74223937-74223956 | Msa0621900:intron | 15.0% |
| !!! | TTAAAATTAGTCATCTTTTT+AGG | + | chr4_2:74224261-74224280 | Msa0621900:intron | 15.0% |
| !!! | GTGATTTTTGAATATTTATA+TGG | - | chr4_2:74224492-74224511 | None:intergenic | 15.0% |
| !!! | AATCTTGTATTCTTTTTTTT+TGG | + | chr4_2:74224530-74224549 | Msa0621900:intron | 15.0% |
| !! | GTATACATAATTAAACAATA+CGG | - | chr4_2:74224684-74224703 | None:intergenic | 15.0% |
| !!! | AACTATTATCTTTTTCAATT+AGG | - | chr4_2:74225070-74225089 | None:intergenic | 15.0% |
| !! | CAATGATAAAATTAAACTTT+AGG | - | chr4_2:74225200-74225219 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTAATTTTATCAT+TGG | + | chr4_2:74225198-74225217 | Msa0621900:intron | 15.0% |
| !!! | AATTACAATATTTTATCTCT+TGG | - | chr4_2:74225301-74225320 | None:intergenic | 15.0% |
| !! | AGTTATTAGTAGTATGAAAT+AGG | - | chr4_2:74221117-74221136 | None:intergenic | 20.0% |
| !!! | TTTTGTCACTTTTTCAAATT+TGG | + | chr4_2:74221755-74221774 | Msa0621900:intron | 20.0% |
| !! | TTTATGCACATTTAATGTTA+TGG | - | chr4_2:74222002-74222021 | None:intergenic | 20.0% |
| !! | GAATTAAAAAATTGAAGTCT+TGG | - | chr4_2:74222179-74222198 | None:intergenic | 20.0% |
| !!! | TCTATGATATAATGGATTAT+TGG | + | chr4_2:74222225-74222244 | Msa0621900:intron | 20.0% |
| !!! | AAGTTTTTAATTCCTTTTTG+CGG | - | chr4_2:74222263-74222282 | None:intergenic | 20.0% |
| !!! | TCTTTATTTTTCTCTCTTTA+AGG | - | chr4_2:74222494-74222513 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAGTTAACTCT+CGG | - | chr4_2:74222613-74222632 | None:intergenic | 20.0% |
| !!! | AAAATGTTGTTAACTTGTTA+TGG | + | chr4_2:74222659-74222678 | Msa0621900:intron | 20.0% |
| !!! | AAATGTTGTTAACTTGTTAT+GGG | + | chr4_2:74222660-74222679 | Msa0621900:intron | 20.0% |
| !! | ATATATATATATATGGCAAC+TGG | - | chr4_2:74222705-74222724 | None:intergenic | 20.0% |
| !! | TCAGCATTACTAATAATAAT+TGG | + | chr4_2:74222911-74222930 | Msa0621900:intron | 20.0% |
| !! | CAGCATTACTAATAATAATT+GGG | + | chr4_2:74222912-74222931 | Msa0621900:intron | 20.0% |
| !!! | AGTCATTATGTTTTTTTGTT+TGG | + | chr4_2:74222938-74222957 | Msa0621900:intron | 20.0% |
| !!! | TTCCTTTTTCTTTTTCTTTT+GGG | + | chr4_2:74223042-74223061 | Msa0621900:intron | 20.0% |
| !! | AATATGTCAAATACATCTAA+AGG | + | chr4_2:74224070-74224089 | Msa0621900:intron | 20.0% |
| !!! | AAAACTAAAATGACTTGTTT+GGG | - | chr4_2:74224146-74224165 | None:intergenic | 20.0% |
| !!! | AAAAACTAAAATGACTTGTT+TGG | - | chr4_2:74224147-74224166 | None:intergenic | 20.0% |
| !!! | AAAGATGACTAATTTTAAGT+GGG | - | chr4_2:74224259-74224278 | None:intergenic | 20.0% |
| !!! | AAAAGATGACTAATTTTAAG+TGG | - | chr4_2:74224260-74224279 | None:intergenic | 20.0% |
| !! | GATAAATCATAATATATGCA+TGG | - | chr4_2:74224581-74224600 | None:intergenic | 20.0% |
| !!! | ATCTTGTATTCTAATTTTGA+CGG | + | chr4_2:74224629-74224648 | Msa0621900:intron | 20.0% |
| !! | TTAGTATAAGACATTAGTAA+TGG | + | chr4_2:74224720-74224739 | Msa0621900:intron | 20.0% |
| !! | ATTAAAGAAAATCCAATAGA+CGG | - | chr4_2:74225041-74225060 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTTTGTTTATGT+AGG | + | chr4_2:74225361-74225380 | Msa0621900:intron | 20.0% |
| !!! | AAATCCAATATTTGAGATTT+TGG | - | chr4_2:74225548-74225567 | None:intergenic | 20.0% |
| !!! | CAAATATTGGATTTTAATTC+AGG | + | chr4_2:74225554-74225573 | Msa0621900:CDS | 20.0% |
| !! | CAATAACAATTAAGAAAAGA+AGG | + | chr4_2:74225735-74225754 | Msa0621900:intron | 20.0% |
| !! | ATTACATGAAATTTAAATCC+AGG | + | chr4_2:74225774-74225793 | Msa0621900:intron | 20.0% |
| ! | GTATGAAATAGGTGAAAAAA+GGG | - | chr4_2:74221106-74221125 | None:intergenic | 25.0% |
| ! | AGTATGAAATAGGTGAAAAA+AGG | - | chr4_2:74221107-74221126 | None:intergenic | 25.0% |
| !!! | AAGCAATTTTGATGGTTTTA+GGG | - | chr4_2:74221244-74221263 | None:intergenic | 25.0% |
| ! | ATTATGTCTTGTATAGAAGA+TGG | - | chr4_2:74221317-74221336 | None:intergenic | 25.0% |
| !!! | TTAGATTTTTCAATACTGTG+AGG | - | chr4_2:74221954-74221973 | None:intergenic | 25.0% |
| ! | AATGGTAAATGTTAGTTGTT+AGG | + | chr4_2:74222122-74222141 | Msa0621900:intron | 25.0% |
| !! | TTAATTTTTCCTCTTTTGTC+TGG | + | chr4_2:74222145-74222164 | Msa0621900:intron | 25.0% |
| !! | TAATTTTTCCTCTTTTGTCT+GGG | + | chr4_2:74222146-74222165 | Msa0621900:intron | 25.0% |
| ! | TAATCCATTATATCATAGAG+AGG | - | chr4_2:74222224-74222243 | None:intergenic | 25.0% |
| ! | ATTTGTATTTCTCTCTCTTA+AGG | - | chr4_2:74222391-74222410 | None:intergenic | 25.0% |
| ! | TTAAGGTTATCGCTAAAATT+GGG | - | chr4_2:74222589-74222608 | None:intergenic | 25.0% |
| !! | TTTAAGGTTATCGCTAAAAT+TGG | - | chr4_2:74222590-74222609 | None:intergenic | 25.0% |
| ! | TATAGAATAGACAAAGACTA+TGG | - | chr4_2:74222967-74222986 | None:intergenic | 25.0% |
| ! | ATAGTCTTTGTCTATTCTAT+AGG | + | chr4_2:74222966-74222985 | Msa0621900:intron | 25.0% |
| !! | CTTCCTTTTTCTTTTTCTTT+TGG | + | chr4_2:74223041-74223060 | Msa0621900:intron | 25.0% |
| !! | TCCTTTTTCTTTTTCTTTTG+GGG | + | chr4_2:74223043-74223062 | Msa0621900:intron | 25.0% |
| ! | CTTAAGAAATTACTAAGAAG+CGG | + | chr4_2:74223157-74223176 | Msa0621900:intron | 25.0% |
| !! | ACAATTTGGAGTTATAACAA+GGG | + | chr4_2:74223372-74223391 | Msa0621900:CDS | 25.0% |
| ! | TATATATATGATCGACAACT+AGG | - | chr4_2:74223509-74223528 | None:intergenic | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | chr4_2:74223572-74223591 | None:intergenic | 25.0% |
| ! | TTAACAATACTAGTAGATTG+TGG | - | chr4_2:74223848-74223867 | None:intergenic | 25.0% |
| ! | ACTAGTATTGTTAACATTCT+TGG | + | chr4_2:74223854-74223873 | Msa0621900:intron | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | + | chr4_2:74224359-74224378 | Msa0621900:intron | 25.0% |
| !!! | TTGAGACTTTTGAAACTTAA+AGG | + | chr4_2:74224388-74224407 | Msa0621900:intron | 25.0% |
| ! | TGAAACTTAAAGGACTTATT+TGG | + | chr4_2:74224398-74224417 | Msa0621900:intron | 25.0% |
| ! | GAAACTTAAAGGACTTATTT+GGG | + | chr4_2:74224399-74224418 | Msa0621900:intron | 25.0% |
| !!! | CTTGTATTCTTTTTTTTTGG+TGG | + | chr4_2:74224533-74224552 | Msa0621900:intron | 25.0% |
| !! | ACATTAGTAATGGTGAATTT+TGG | + | chr4_2:74224730-74224749 | Msa0621900:intron | 25.0% |
| ! | GTTATTAAAGAAGCTATTCT+AGG | - | chr4_2:74224942-74224961 | None:intergenic | 25.0% |
| ! | CATAATATGTAGCAAATTCA+AGG | - | chr4_2:74224986-74225005 | None:intergenic | 25.0% |
| ! | GTATGAATAAATTAAGCCAT+GGG | - | chr4_2:74225526-74225545 | None:intergenic | 25.0% |
| ! | CATACCAAAATCTCAAATAT+TGG | + | chr4_2:74225541-74225560 | Msa0621900:CDS | 25.0% |
| !!! | TTTTAATTCAGGTGTATTCA+AGG | + | chr4_2:74225565-74225584 | Msa0621900:CDS | 25.0% |
| !!! | CTTACTTTGTTTTATTCATG+GGG | - | chr4_2:74225637-74225656 | None:intergenic | 25.0% |
| !!! | GCTTACTTTGTTTTATTCAT+GGG | - | chr4_2:74225638-74225657 | None:intergenic | 25.0% |
| !! | GAAGATTGGAAAAAACATTT+TGG | + | chr4_2:74225977-74225996 | Msa0621900:CDS | 25.0% |
| !!! | AAAAACATTTTGGCACTAAA+TGG | + | chr4_2:74225987-74226006 | Msa0621900:CDS | 25.0% |
| !! | GAAGCAATTTTGATGGTTTT+AGG | - | chr4_2:74221245-74221264 | None:intergenic | 30.0% |
| AAAATTGCTTCTAGTGACTA+TGG | + | chr4_2:74221254-74221273 | Msa0621900:CDS | 30.0% | |
| ATGGATGAAAAACTGCTATT+GGG | - | chr4_2:74221298-74221317 | None:intergenic | 30.0% | |
| AGCTTCAGAAAACAAAGAAA+AGG | + | chr4_2:74221455-74221474 | Msa0621900:CDS | 30.0% | |
| GCTTCAGAAAACAAAGAAAA+GGG | + | chr4_2:74221456-74221475 | Msa0621900:CDS | 30.0% | |
| CTTCAGAAAACAAAGAAAAG+GGG | + | chr4_2:74221457-74221476 | Msa0621900:CDS | 30.0% | |
| CAACATAGTAACCAATCAAA+GGG | - | chr4_2:74221505-74221524 | None:intergenic | 30.0% | |
| TCAACATAGTAACCAATCAA+AGG | - | chr4_2:74221506-74221525 | None:intergenic | 30.0% | |
| ATTGGTTACTATGTTGATGT+TGG | + | chr4_2:74221509-74221528 | Msa0621900:CDS | 30.0% | |
| ! | CTTTAGTAGAGTACTACTTA+TGG | + | chr4_2:74221793-74221812 | Msa0621900:intron | 30.0% |
| TTATATCATAGAGAGGAGTT+GGG | - | chr4_2:74222217-74222236 | None:intergenic | 30.0% | |
| ATTATATCATAGAGAGGAGT+TGG | - | chr4_2:74222218-74222237 | None:intergenic | 30.0% | |
| AACTCCTCTCTATGATATAA+TGG | + | chr4_2:74222217-74222236 | Msa0621900:intron | 30.0% | |
| TAAGGTTATCGCTAAAATTG+GGG | - | chr4_2:74222588-74222607 | None:intergenic | 30.0% | |
| ATAAGTTAACTCTCGGTTTA+AGG | - | chr4_2:74222606-74222625 | None:intergenic | 30.0% | |
| TCTTAAAAAGAAAGGGACTA+CGG | + | chr4_2:74222839-74222858 | Msa0621900:intron | 30.0% | |
| ! | ACTACGGTAATCTAAAATTG+AGG | + | chr4_2:74222855-74222874 | Msa0621900:intron | 30.0% |
| TGTGAACTCATTCTAACTTA+TGG | - | chr4_2:74223011-74223030 | None:intergenic | 30.0% | |
| GAAAAAGAAAAAGGAAGACT+TGG | - | chr4_2:74223038-74223057 | None:intergenic | 30.0% | |
| ACCCCAAAAGAAAAAGAAAA+AGG | - | chr4_2:74223047-74223066 | None:intergenic | 30.0% | |
| TTTGTCAAGAATAGAAGACT+TGG | - | chr4_2:74223078-74223097 | None:intergenic | 30.0% | |
| ATGCATACATCAAGAACTAA+CGG | - | chr4_2:74223197-74223216 | None:intergenic | 30.0% | |
| ! | GACAATTTGGAGTTATAACA+AGG | + | chr4_2:74223371-74223390 | Msa0621900:CDS | 30.0% |
| !! | CTTGGACATGTATTTTGAAA+CGG | + | chr4_2:74223793-74223812 | Msa0621900:intron | 30.0% |
| TTGTGAATATAAGCCTTTCA+CGG | - | chr4_2:74223925-74223944 | None:intergenic | 30.0% | |
| ATAGTATGAATCGTTGAATG+TGG | + | chr4_2:74224014-74224033 | Msa0621900:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | - | chr4_2:74224448-74224467 | None:intergenic | 30.0% | |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | chr4_2:74224417-74224436 | None:intergenic | 30.0% |
| CCAACTATGCTATCTATAAT+AGG | - | chr4_2:74224188-74224207 | None:intergenic | 30.0% | |
| CCTATTATAGATAGCATAGT+TGG | + | chr4_2:74224185-74224204 | Msa0621900:intron | 30.0% | |
| !! | ACTAATTTTAAGTGGGTGTT+AGG | - | chr4_2:74224252-74224271 | None:intergenic | 30.0% |
| !! | ATTAGTCATCTTTTTAGGCA+TGG | + | chr4_2:74224266-74224285 | Msa0621900:intron | 30.0% |
| ! | TTTCAAACAAGTCCTTTTAG+AGG | - | chr4_2:74224343-74224362 | None:intergenic | 30.0% |
| TGAAACTTAAATGACCACTT+TGG | + | chr4_2:74224427-74224446 | Msa0621900:intron | 30.0% | |
| GAAACTTAAATGACCACTTT+GGG | + | chr4_2:74224428-74224447 | Msa0621900:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | chr4_2:74224448-74224467 | Msa0621900:intron | 30.0% | |
| ATATGGTCAAATGCATCTAA+AGG | - | chr4_2:74224475-74224494 | None:intergenic | 30.0% | |
| !! | TAGTAATGGTGAATTTTGGT+TGG | + | chr4_2:74224734-74224753 | Msa0621900:intron | 30.0% |
| GTTAATCTCAATCAATGGAA+GGG | + | chr4_2:74224827-74224846 | Msa0621900:CDS | 30.0% | |
| AACAAGGCTCCATAAATAAT+TGG | + | chr4_2:74224883-74224902 | Msa0621900:CDS | 30.0% | |
| AGAGGATCTCCAATTATTTA+TGG | - | chr4_2:74224895-74224914 | None:intergenic | 30.0% | |
| ! | TTAAAGAAGCTATTCTAGGA+TGG | - | chr4_2:74224938-74224957 | None:intergenic | 30.0% |
| !!! | AGCAATAACTTTTTGCTGTT+AGG | + | chr4_2:74225174-74225193 | Msa0621900:intron | 30.0% |
| TAGTCAAGATTAAACGTCTA+GGG | - | chr4_2:74225241-74225260 | None:intergenic | 30.0% | |
| ! | GAAATTGACATTTTGCTTCA+AGG | + | chr4_2:74225383-74225402 | Msa0621900:CDS | 30.0% |
| ! | TTTTCTCATAATGAAGTCCA+GGG | - | chr4_2:74225421-74225440 | None:intergenic | 30.0% |
| ! | TTTTTCTCATAATGAAGTCC+AGG | - | chr4_2:74225422-74225441 | None:intergenic | 30.0% |
| TGGACTTCATTATGAGAAAA+AGG | + | chr4_2:74225421-74225440 | Msa0621900:CDS | 30.0% | |
| GGTATGAATAAATTAAGCCA+TGG | - | chr4_2:74225527-74225546 | None:intergenic | 30.0% | |
| ATTAAAAGAAACATCACCAG+TGG | + | chr4_2:74225596-74225615 | Msa0621900:CDS | 30.0% | |
| !!! | GGCTTACTTTGTTTTATTCA+TGG | - | chr4_2:74225639-74225658 | None:intergenic | 30.0% |
| CAAAGTATATGGCATTTCAA+AGG | - | chr4_2:74225660-74225679 | None:intergenic | 30.0% | |
| TCATGATGACTCAAAGTATA+TGG | - | chr4_2:74225671-74225690 | None:intergenic | 30.0% | |
| ACATGAAATTTAAATCCAGG+TGG | + | chr4_2:74225777-74225796 | Msa0621900:intron | 30.0% | |
| CATGAAATTTAAATCCAGGT+GGG | + | chr4_2:74225778-74225797 | Msa0621900:intron | 30.0% | |
| ! | ACTCAAGTGGATTTGATAAT+TGG | + | chr4_2:74225861-74225880 | Msa0621900:CDS | 30.0% |
| !!! | TTGTTGAAGATTTTTTGTCC+AGG | - | chr4_2:74226064-74226083 | None:intergenic | 30.0% |
| ! | GGTTGATATGGTGTTAACAT+TGG | - | chr4_2:74221207-74221226 | None:intergenic | 35.0% |
| ! | GTTATGGAGTTTGGTTGATA+TGG | - | chr4_2:74221219-74221238 | None:intergenic | 35.0% |
| ! | GTCACTAGAAGCAATTTTGA+TGG | - | chr4_2:74221252-74221271 | None:intergenic | 35.0% |
| GATGGATGAAAAACTGCTAT+TGG | - | chr4_2:74221299-74221318 | None:intergenic | 35.0% | |
| TACAATTCCATCATGAGTCA+TGG | - | chr4_2:74221423-74221442 | None:intergenic | 35.0% | |
| TGATGGAATTGTAGTTGACA+TGG | + | chr4_2:74221430-74221449 | Msa0621900:CDS | 35.0% | |
| TTGTATGCAACTCTTGAACA+TGG | + | chr4_2:74221557-74221576 | Msa0621900:CDS | 35.0% | |
| AGATAATCAGTCCAAGAAAC+AGG | - | chr4_2:74221590-74221609 | None:intergenic | 35.0% | |
| GACTGATTATCTTTACCTGA+CGG | + | chr4_2:74221598-74221617 | Msa0621900:CDS | 35.0% | |
| AATCACCAACGTTCATGAAT+TGG | + | chr4_2:74221679-74221698 | Msa0621900:CDS | 35.0% | |
| CATGAATTGGATGTGATTAC+TGG | + | chr4_2:74221692-74221711 | Msa0621900:CDS | 35.0% | |
| ATATACTCTACTCCGCAAAA+AGG | + | chr4_2:74222248-74222267 | Msa0621900:intron | 35.0% | |
| TCTCTCTTAAGGTGTATTGT+TGG | - | chr4_2:74222380-74222399 | None:intergenic | 35.0% | |
| !! | CTCTCTTTAAGGTGTATTGT+TGG | - | chr4_2:74222483-74222502 | None:intergenic | 35.0% |
| CTTGACAAACATGTGTATGT+TGG | + | chr4_2:74223089-74223108 | Msa0621900:intron | 35.0% | |
| GGTATGTTTGATTCAGGAAA+AGG | + | chr4_2:74223283-74223302 | Msa0621900:intron | 35.0% | |
| GAATTCAGAGTTATATCACG+CGG | + | chr4_2:74223333-74223352 | Msa0621900:CDS | 35.0% | |
| !! | TAGATTTGGTGTACGTTTGT+TGG | - | chr4_2:74223486-74223505 | None:intergenic | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+GGG | - | chr4_2:74223797-74223816 | None:intergenic | 35.0% |
| ACAGTGCACATTGCAAAAAT+TGG | - | chr4_2:74223590-74223609 | None:intergenic | 35.0% | |
| TAACGGTCAAAATTGTGCAT+TGG | + | chr4_2:74223752-74223771 | Msa0621900:intron | 35.0% | |
| CATATGTGAAGTGATTGACT+TGG | + | chr4_2:74223775-74223794 | Msa0621900:intron | 35.0% | |
| ATACTAGTAGATTGTGGACA+AGG | - | chr4_2:74223842-74223861 | None:intergenic | 35.0% | |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | + | chr4_2:74224101-74224120 | Msa0621900:intron | 35.0% |
| GAAACTTAAAGGACCACTTT+GGG | - | chr4_2:74224117-74224136 | None:intergenic | 35.0% | |
| TGAAACTTAAAGGACCACTT+TGG | - | chr4_2:74224118-74224137 | None:intergenic | 35.0% | |
| !! | ATCTTTTTAGGCATGGCAAA+TGG | + | chr4_2:74224273-74224292 | Msa0621900:intron | 35.0% |
| CATCATCATCATCCTCTAAA+AGG | + | chr4_2:74224328-74224347 | Msa0621900:intron | 35.0% | |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | - | chr4_2:74224101-74224120 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTGGTGGTGTCCA+AGG | + | chr4_2:74224542-74224561 | Msa0621900:intron | 35.0% |
| CATAATATATGCATGGTCCA+GGG | - | chr4_2:74224574-74224593 | None:intergenic | 35.0% | |
| TCATAATATATGCATGGTCC+AGG | - | chr4_2:74224575-74224594 | None:intergenic | 35.0% | |
| TGATCTTAACTCACTTGGTA+AGG | - | chr4_2:74224603-74224622 | None:intergenic | 35.0% | |
| TACCAAGTGAGTTAAGATCA+CGG | + | chr4_2:74224603-74224622 | Msa0621900:intron | 35.0% | |
| !!! | ATTTTGGTTGGCATGTATAC+AGG | + | chr4_2:74224746-74224765 | Msa0621900:intron | 35.0% |
| !! | TTCTGCTTTTACCAAAGATC+AGG | + | chr4_2:74224800-74224819 | Msa0621900:CDS | 35.0% |
| ! | CTTTTACCAAAGATCAGGAA+CGG | + | chr4_2:74224805-74224824 | Msa0621900:CDS | 35.0% |
| GAACGGTTAATCTCAATCAA+TGG | + | chr4_2:74224822-74224841 | Msa0621900:CDS | 35.0% | |
| GGTTAATCTCAATCAATGGA+AGG | + | chr4_2:74224826-74224845 | Msa0621900:CDS | 35.0% | |
| ! | TGGAAGGGAATTGAACTTTT+TGG | + | chr4_2:74224842-74224861 | Msa0621900:CDS | 35.0% |
| ! | AGGGAATTGAACTTTTTGGA+AGG | + | chr4_2:74224846-74224865 | Msa0621900:CDS | 35.0% |
| !! | GGGAATTGAACTTTTTGGAA+GGG | + | chr4_2:74224847-74224866 | Msa0621900:CDS | 35.0% |
| AGATTGAGGGAAGAAATTAG+AGG | - | chr4_2:74224913-74224932 | None:intergenic | 35.0% | |
| TGATCATCAATCCGAGAAAA+TGG | + | chr4_2:74225004-74225023 | Msa0621900:CDS | 35.0% | |
| CTAGTCAAGATTAAACGTCT+AGG | - | chr4_2:74225242-74225261 | None:intergenic | 35.0% | |
| ATAATGAAGTCCAGGGATAT+AGG | - | chr4_2:74225414-74225433 | None:intergenic | 35.0% | |
| AATAAATTAAGCCATGGGTG+AGG | - | chr4_2:74225521-74225540 | None:intergenic | 35.0% | |
| !! | TTGAAGTTTTGTAGTGATGC+TGG | + | chr4_2:74225914-74225933 | Msa0621900:CDS | 35.0% |
| CACTAAATGGAAGAGTTTCT+TGG | + | chr4_2:74226000-74226019 | Msa0621900:CDS | 35.0% | |
| TTCCTACGGTGGATATCAAA+CGG | - | chr4_2:74221145-74221164 | None:intergenic | 40.0% | |
| !! | TAGCAGAGTTTTGCACTGAT+CGG | - | chr4_2:74221171-74221190 | None:intergenic | 40.0% |
| ! | TTTAGGGTCGTTATGGAGTT+TGG | - | chr4_2:74221228-74221247 | None:intergenic | 40.0% |
| !!! | TGATGGTTTTAGGGTCGTTA+TGG | - | chr4_2:74221235-74221254 | None:intergenic | 40.0% |
| GTCTTTGAACACCCTTTGAT+TGG | + | chr4_2:74221491-74221510 | Msa0621900:CDS | 40.0% | |
| GGTTACTATGTTGATGTTGG+AGG | + | chr4_2:74221512-74221531 | Msa0621900:CDS | 40.0% | |
| ATGTTGGAGGAGAACAACTA+TGG | + | chr4_2:74221525-74221544 | Msa0621900:CDS | 40.0% | |
| GATTATCTTTACCTGACGGT+TGG | + | chr4_2:74221602-74221621 | Msa0621900:CDS | 40.0% | |
| CTTTCCAATGCTGGAATTAG+TGG | + | chr4_2:74221632-74221651 | Msa0621900:CDS | 40.0% | |
| AGTGGTCAGACGTTTCTTTA+CGG | + | chr4_2:74221650-74221669 | Msa0621900:CDS | 40.0% | |
| !! | TCATGAACGTTGGTGATTTG+AGG | - | chr4_2:74221677-74221696 | None:intergenic | 40.0% |
| CACATCCAATTCATGAACGT+TGG | - | chr4_2:74221687-74221706 | None:intergenic | 40.0% | |
| !!! | CTTTTTCTTTTGGGGTACTG+CGG | + | chr4_2:74223051-74223070 | Msa0621900:intron | 40.0% |
| GAAATTACTAAGAAGCGGCA+TGG | + | chr4_2:74223162-74223181 | Msa0621900:intron | 40.0% | |
| AGTTGTGGTCATCTATCGAA+TGG | + | chr4_2:74223261-74223280 | Msa0621900:intron | 40.0% | |
| GTTGTGGTCATCTATCGAAT+GGG | + | chr4_2:74223262-74223281 | Msa0621900:intron | 40.0% | |
| CGAATGGGTATGTTTGATTC+AGG | + | chr4_2:74223277-74223296 | Msa0621900:intron | 40.0% | |
| ! | CTTGGAGGTTTAGGACAATT+TGG | + | chr4_2:74223358-74223377 | Msa0621900:CDS | 40.0% |
| GATCGACAACTAGGTAGATT+TGG | - | chr4_2:74223500-74223519 | None:intergenic | 40.0% | |
| !!! | GGACATGTATTTTGAAACGG+AGG | - | chr4_2:74223796-74223815 | None:intergenic | 40.0% |
| !!! | GGACATGTATTTTGAAACGG+AGG | + | chr4_2:74223796-74223815 | Msa0621900:intron | 40.0% |
| TTCCATTAGTCATCCGTGAA+AGG | + | chr4_2:74223909-74223928 | Msa0621900:intron | 40.0% | |
| TGCTTCCTTGAAGTCATCTT+TGG | + | chr4_2:74224212-74224231 | Msa0621900:intron | 40.0% | |
| TGGTACCAAAGATGACTTCA+AGG | - | chr4_2:74224220-74224239 | None:intergenic | 40.0% | |
| GTCATCTTTGGTACCAAATC+TGG | + | chr4_2:74224224-74224243 | Msa0621900:intron | 40.0% | |
| !! | TTTTTAGGCATGGCAAATGG+TGG | + | chr4_2:74224276-74224295 | Msa0621900:intron | 40.0% |
| ACCAAGTGAGTTAAGATCAC+GGG | + | chr4_2:74224604-74224623 | Msa0621900:intron | 40.0% | |
| TGGCATGTATACAGGTTAAG+TGG | + | chr4_2:74224754-74224773 | Msa0621900:intron | 40.0% | |
| GATTAACCGTTCCTGATCTT+TGG | - | chr4_2:74224814-74224833 | None:intergenic | 40.0% | |
| !! | TTCTAGGATGGTCAGATTGA+GGG | - | chr4_2:74224926-74224945 | None:intergenic | 40.0% |
| !! | ATTCTAGGATGGTCAGATTG+AGG | - | chr4_2:74224927-74224946 | None:intergenic | 40.0% |
| GCAGTAGATAATGCTGTGTT+TGG | - | chr4_2:74224964-74224983 | None:intergenic | 40.0% | |
| TCATCAATCCGAGAAAATGG+TGG | + | chr4_2:74225007-74225026 | Msa0621900:CDS | 40.0% | |
| ! | TACCTTGTCCACCATTTTCT+CGG | - | chr4_2:74225018-74225037 | None:intergenic | 40.0% |
| TTCTTGAATAGAGTCCGAAG+TGG | + | chr4_2:74225458-74225477 | Msa0621900:CDS | 40.0% | |
| GTTGGATTCTTACACTCAAG+TGG | + | chr4_2:74225848-74225867 | Msa0621900:CDS | 40.0% | |
| CCAGGTGATAAAATCATCCT+GGG | - | chr4_2:74226046-74226065 | None:intergenic | 40.0% | |
| TCCAGGTGATAAAATCATCC+TGG | - | chr4_2:74226047-74226066 | None:intergenic | 40.0% | |
| TCCTACGGTGGATATCAAAC+GGG | - | chr4_2:74221144-74221163 | None:intergenic | 45.0% | |
| !! | GCACTGATCGGTTTTTCCTA+CGG | - | chr4_2:74221159-74221178 | None:intergenic | 45.0% |
| !! | TTAACATTGGCTAGCTCTGG+TGG | - | chr4_2:74221194-74221213 | None:intergenic | 45.0% |
| ! | GTGTTAACATTGGCTAGCTC+TGG | - | chr4_2:74221197-74221216 | None:intergenic | 45.0% |
| CTTTCACTATAGCAGCCAGA+GGG | + | chr4_2:74221372-74221391 | Msa0621900:CDS | 45.0% | |
| ! | AGTCATGGCTTGTCCATTAG+TGG | - | chr4_2:74221408-74221427 | None:intergenic | 45.0% |
| ! | ATGGACTTGCACCTGTTTCT+TGG | + | chr4_2:74221576-74221595 | Msa0621900:CDS | 45.0% |
| TATCTTTACCTGACGGTTGG+AGG | + | chr4_2:74221605-74221624 | Msa0621900:CDS | 45.0% | |
| CTGACCACTAATTCCAGCAT+TGG | - | chr4_2:74221639-74221658 | None:intergenic | 45.0% | |
| GGTTCAAACCCAGACAAAAG+AGG | - | chr4_2:74222157-74222176 | None:intergenic | 45.0% | |
| GAGTTATATCACGCGGTTCT+TGG | + | chr4_2:74223340-74223359 | Msa0621900:CDS | 45.0% | |
| TTATATCACGCGGTTCTTGG+AGG | + | chr4_2:74223343-74223362 | Msa0621900:CDS | 45.0% | |
| CAGTATAACCGTACCGTTGT+GGG | - | chr4_2:74223421-74223440 | None:intergenic | 45.0% | |
| TCAGTATAACCGTACCGTTG+TGG | - | chr4_2:74223422-74223441 | None:intergenic | 45.0% | |
| AGCCTTTCACGGATGACTAA+TGG | - | chr4_2:74223914-74223933 | None:intergenic | 45.0% | |
| CCAAGTGAGTTAAGATCACG+GGG | + | chr4_2:74224605-74224624 | Msa0621900:intron | 45.0% | |
| CAAGTGAGTTAAGATCACGG+GGG | + | chr4_2:74224606-74224625 | Msa0621900:intron | 45.0% | |
| !! | ATCCGAGAAAATGGTGGACA+AGG | + | chr4_2:74225013-74225032 | Msa0621900:CDS | 45.0% |
| GAAGCTTCAACTCTCCACTT+CGG | - | chr4_2:74225475-74225494 | None:intergenic | 45.0% | |
| GAGTTGAAGCTTCAGTCACA+AGG | + | chr4_2:74225482-74225501 | Msa0621900:CDS | 45.0% | |
| AGCTTCAGTCACAAGGATTG+TGG | + | chr4_2:74225489-74225508 | Msa0621900:CDS | 45.0% | |
| GCTTCAGTCACAAGGATTGT+GGG | + | chr4_2:74225490-74225509 | Msa0621900:CDS | 45.0% | |
| GTAAACCAAGACAGTTCCAC+TGG | - | chr4_2:74225615-74225634 | None:intergenic | 45.0% | |
| TTAAATCCAGGTGGGACGAT+AGG | + | chr4_2:74225786-74225805 | Msa0621900:intron | 45.0% | |
| GTCAGCAATGATACCAAACG+AGG | + | chr4_2:74225811-74225830 | Msa0621900:CDS | 45.0% | |
| GTGTAGAAGACATCCTCGTT+TGG | - | chr4_2:74225827-74225846 | None:intergenic | 45.0% | |
| GAGGATGTCTTCTACACAGT+TGG | + | chr4_2:74225830-74225849 | Msa0621900:CDS | 45.0% | |
| TCTTCTTGTGTGCTGTGGTT+AGG | - | chr4_2:74225962-74225981 | None:intergenic | 45.0% | |
| ACCACAGCACACAAGAAGAT+TGG | + | chr4_2:74225963-74225982 | Msa0621900:CDS | 45.0% | |
| TCCAATCTTCTTGTGTGCTG+TGG | - | chr4_2:74225967-74225986 | None:intergenic | 45.0% | |
| ACAAGCACAAGTTTGATCCC+AGG | + | chr4_2:74226026-74226045 | Msa0621900:CDS | 45.0% | |
| ! | CCCAGGATGATTTTATCACC+TGG | + | chr4_2:74226043-74226062 | Msa0621900:CDS | 45.0% |
| !!! | TTAATTTGAATTAAAAAAAA+AGG | - | chr4_2:74222068-74222087 | None:intergenic | 5.0% |
| !! | TATATAATTAAAGATATTAA+CGG | + | chr4_2:74223735-74223754 | Msa0621900:intron | 5.0% |
| ACCCGTTTGATATCCACCGT+AGG | + | chr4_2:74221140-74221159 | Msa0621900:CDS | 50.0% | |
| !! | CTGATCGGTTTTTCCTACGG+TGG | - | chr4_2:74221156-74221175 | None:intergenic | 50.0% |
| CCTCTGGCTGCTATAGTGAA+AGG | - | chr4_2:74221374-74221393 | None:intergenic | 50.0% | |
| CCTTTCACTATAGCAGCCAG+AGG | + | chr4_2:74221371-74221390 | Msa0621900:CDS | 50.0% | |
| GGACAAGCCATGACTCATGA+TGG | + | chr4_2:74221413-74221432 | Msa0621900:CDS | 50.0% | |
| ! | AAAGTGTTCCTCCAACCGTC+AGG | - | chr4_2:74221616-74221635 | None:intergenic | 50.0% |
| GGAGGAACACTTTCCAATGC+TGG | + | chr4_2:74221623-74221642 | Msa0621900:CDS | 50.0% | |
| TGGGTGTTAGGAGCCAGATT+TGG | - | chr4_2:74224240-74224259 | None:intergenic | 50.0% | |
| ATGGTCCAGGGTTCAAACCT+TGG | - | chr4_2:74224562-74224581 | None:intergenic | 50.0% | |
| CCCCGTGATCTTAACTCACT+TGG | - | chr4_2:74224608-74224627 | None:intergenic | 50.0% | |
| GGGATGCTGCTAATGCAACA+AGG | + | chr4_2:74224867-74224886 | Msa0621900:CDS | 50.0% | |
| !! | GTGGACAAGGTACCGTCTAT+TGG | + | chr4_2:74225026-74225045 | Msa0621900:intron | 50.0% |
| !! | CAAGGACTAGCCTATATCCC+TGG | + | chr4_2:74225401-74225420 | Msa0621900:CDS | 50.0% |
| CATCACCAGTGGAACTGTCT+TGG | + | chr4_2:74225607-74225626 | Msa0621900:CDS | 50.0% | |
| ACTATAGCAGCCAGAGGGCA+AGG | + | chr4_2:74221377-74221396 | Msa0621900:CDS | 55.0% | |
| GGGCAAGGTCACTCCACTAA+TGG | + | chr4_2:74221392-74221411 | Msa0621900:CDS | 55.0% | |
| CACGCGGTTCTTGGAGGTTT+AGG | + | chr4_2:74223349-74223368 | Msa0621900:CDS | 55.0% | |
| TCTTCAGCCAGCTCCCACAA+CGG | + | chr4_2:74223405-74223424 | Msa0621900:CDS | 55.0% | |
| GGTGTCCAAGGTTTGAACCC+TGG | + | chr4_2:74224554-74224573 | Msa0621900:intron | 55.0% | |
| TGTGGGAAGTTCCTCACCCA+TGG | + | chr4_2:74225507-74225526 | Msa0621900:CDS | 55.0% | |
| TGACATCCTATCGTCCCACC+TGG | - | chr4_2:74225795-74225814 | None:intergenic | 55.0% | |
| AGTGGAGTGACCTTGCCCTC+TGG | - | chr4_2:74221390-74221409 | None:intergenic | 60.0% | |
| AGCCAGCTCCCACAACGGTA+CGG | + | chr4_2:74223410-74223429 | Msa0621900:intron | 60.0% | |
| AACCGTACCGTTGTGGGAGC+TGG | - | chr4_2:74223415-74223434 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74221089 | 74226087 | 74221089 | ID=Msa0621900;Name=Msa0621900 |
| chr4_2 | mRNA | 74221089 | 74226087 | 74221089 | ID=Msa0621900-mRNA-1;Parent=Msa0621900;Name=Msa0621900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.6|1|1|1|5|0|526 |
| chr4_2 | exon | 74221089 | 74221713 | 74221089 | ID=Msa0621900-mRNA-1:exon:22341;Parent=Msa0621900-mRNA-1 |
| chr4_2 | exon | 74223299 | 74223426 | 74223299 | ID=Msa0621900-mRNA-1:exon:22342;Parent=Msa0621900-mRNA-1 |
| chr4_2 | exon | 74224768 | 74225034 | 74224768 | ID=Msa0621900-mRNA-1:exon:22343;Parent=Msa0621900-mRNA-1 |
| chr4_2 | exon | 74225383 | 74225651 | 74225383 | ID=Msa0621900-mRNA-1:exon:22344;Parent=Msa0621900-mRNA-1 |
| chr4_2 | exon | 74225796 | 74226087 | 74225796 | ID=Msa0621900-mRNA-1:exon:22345;Parent=Msa0621900-mRNA-1 |
| chr4_2 | CDS | 74221089 | 74221713 | 74221089 | ID=Msa0621900-mRNA-1:cds;Parent=Msa0621900-mRNA-1 |
| chr4_2 | CDS | 74223299 | 74223426 | 74223299 | ID=Msa0621900-mRNA-1:cds;Parent=Msa0621900-mRNA-1 |
| chr4_2 | CDS | 74224768 | 74225034 | 74224768 | ID=Msa0621900-mRNA-1:cds;Parent=Msa0621900-mRNA-1 |
| chr4_2 | CDS | 74225383 | 74225651 | 74225383 | ID=Msa0621900-mRNA-1:cds;Parent=Msa0621900-mRNA-1 |
| chr4_2 | CDS | 74225796 | 74226087 | 74225796 | ID=Msa0621900-mRNA-1:cds;Parent=Msa0621900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
