Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431010 | XP_013458482.1 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431010 | sp|Q9LTS3|CKX3_ARATH | 56.911 | 492 | 205 | 3 | 35 | 526 | 35 | 519 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431010 | A0A072UTW0 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621900 | Msa1431010 | 0.992169 | 1.057662e-191 | -8.615850e-47 |
| Msa1265950 | Msa1431010 | 0.991378 | 2.472441e-187 | -8.615850e-47 |
| Msa1029090 | Msa1431010 | 0.801330 | 9.473619e-49 | -8.615850e-47 |
| Msa1156180 | Msa1431010 | 0.808788 | 2.606904e-50 | -8.615850e-47 |
| Msa1220360 | Msa1431010 | 0.925180 | 2.600785e-90 | -8.615850e-47 |
| Msa0912500 | Msa1431010 | 0.800481 | 1.412327e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431010 | MtrunA17_Chr4g0071111 | 95.446 | 527 | 23 | 1 | 1 | 526 | 1 | 527 | 0.0 | 1043 |
| Msa1431010 | MtrunA17_Chr2g0299371 | 70.037 | 544 | 138 | 9 | 1 | 525 | 1 | 538 | 0.0 | 775 |
| Msa1431010 | MtrunA17_Chr4g0071121 | 57.062 | 531 | 209 | 6 | 1 | 525 | 1 | 518 | 0.0 | 620 |
| Msa1431010 | MtrunA17_Chr3g0141981 | 49.808 | 522 | 241 | 11 | 12 | 525 | 15 | 523 | 2.72e-170 | 492 |
| Msa1431010 | MtrunA17_Chr4g0020621 | 49.383 | 486 | 224 | 10 | 51 | 526 | 50 | 523 | 8.03e-164 | 475 |
| Msa1431010 | MtrunA17_Chr3g0091141 | 49.585 | 482 | 224 | 10 | 51 | 526 | 74 | 542 | 9.45e-162 | 471 |
| Msa1431010 | MtrunA17_Chr7g0257061 | 48.428 | 477 | 227 | 8 | 58 | 526 | 73 | 538 | 5.31e-160 | 466 |
| Msa1431010 | MtrunA17_Chr1g0150941 | 40.519 | 501 | 276 | 10 | 36 | 526 | 17 | 505 | 6.96e-132 | 393 |
| Msa1431010 | MtrunA17_Chr2g0299361 | 52.778 | 324 | 129 | 4 | 206 | 524 | 6 | 310 | 1.12e-119 | 354 |
| Msa1431010 | MtrunA17_Chr2g0299351 | 61.176 | 170 | 61 | 2 | 44 | 209 | 37 | 205 | 7.80e-60 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431010 | AT5G56970.1 | 56.911 | 492 | 205 | 3 | 35 | 526 | 35 | 519 | 0.0 | 588 |
| Msa1431010 | AT4G29740.2 | 50.189 | 528 | 238 | 9 | 11 | 525 | 9 | 524 | 0.0 | 522 |
| Msa1431010 | AT1G75450.1 | 49.905 | 529 | 236 | 10 | 9 | 524 | 8 | 520 | 1.68e-180 | 518 |
| Msa1431010 | AT1G75450.2 | 49.718 | 531 | 237 | 11 | 9 | 525 | 4 | 518 | 1.16e-178 | 513 |
| Msa1431010 | AT2G19500.1 | 48.269 | 520 | 237 | 6 | 13 | 524 | 6 | 501 | 3.80e-172 | 496 |
| Msa1431010 | AT3G63440.1 | 47.170 | 477 | 236 | 6 | 58 | 526 | 60 | 528 | 1.06e-160 | 468 |
| Msa1431010 | AT2G41510.1 | 47.699 | 478 | 227 | 9 | 59 | 526 | 77 | 541 | 1.62e-160 | 469 |
| Msa1431010 | AT2G41510.2 | 47.599 | 479 | 228 | 9 | 58 | 526 | 138 | 603 | 1.06e-159 | 469 |
| Msa1431010 | AT5G56970.2 | 55.051 | 396 | 171 | 3 | 35 | 430 | 35 | 423 | 1.46e-153 | 445 |
| Msa1431010 | AT5G21482.1 | 44.764 | 487 | 239 | 10 | 57 | 526 | 49 | 522 | 1.40e-139 | 413 |
| Msa1431010 | AT4G29740.1 | 50.000 | 432 | 192 | 8 | 11 | 430 | 9 | 428 | 1.61e-139 | 410 |
| Msa1431010 | AT2G41510.3 | 48.936 | 376 | 178 | 7 | 58 | 430 | 76 | 440 | 8.08e-123 | 367 |
| Msa1431010 | AT4G29740.3 | 50.000 | 342 | 147 | 8 | 11 | 340 | 9 | 338 | 2.58e-102 | 312 |
Find 104 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCAATATTTGAGATTT+TGG | 0.091010 | tig0026775:-38527 | None:intergenic |
| ACTCAAGTGGATTTGATAAT+TGG | 0.142815 | tig0026775:+38843 | Msa1431010:CDS |
| AGAGGATCTCCAATTATTTA+TGG | 0.156095 | tig0026775:-37874 | None:intergenic |
| ATGGACTTGCACCTGTTTCT+TGG | 0.217615 | tig0026775:+34861 | Msa1431010:CDS |
| GTTATTAAAGAAGCTATTCT+AGG | 0.268705 | tig0026775:-37921 | None:intergenic |
| CTTGGAGGTTTAGGACAATT+TGG | 0.270154 | tig0026775:+36634 | Msa1431010:CDS |
| AGTTATTAGTAGTATGAAAT+AGG | 0.276115 | tig0026775:-34399 | None:intergenic |
| CACTAAATGGAAGAGTTTCT+TGG | 0.279225 | tig0026775:+38982 | Msa1431010:CDS |
| CATACCAAAATCTCAAATAT+TGG | 0.281178 | tig0026775:+38523 | Msa1431010:CDS |
| GATTAACCGTTCCTGATCTT+TGG | 0.286822 | tig0026775:-37793 | None:intergenic |
| CACGCGGTTCTTGGAGGTTT+AGG | 0.307047 | tig0026775:+36625 | Msa1431010:CDS |
| GTTATGGAGTTTGGTTGATA+TGG | 0.310768 | tig0026775:-34501 | None:intergenic |
| TTTAGGGTCGTTATGGAGTT+TGG | 0.311295 | tig0026775:-34510 | None:intergenic |
| TGATCATCAATCCGAGAAAA+TGG | 0.314927 | tig0026775:+37986 | Msa1431010:CDS |
| AACAAGGCTCCATAAATAAT+TGG | 0.334966 | tig0026775:+37865 | Msa1431010:CDS |
| GAGTTATATCACGCGGTTCT+TGG | 0.336072 | tig0026775:+36616 | Msa1431010:CDS |
| TGGACTTCATTATGAGAAAA+AGG | 0.342313 | tig0026775:+38403 | Msa1431010:CDS |
| AAAATTGCTTCTAGTGACTA+TGG | 0.343388 | tig0026775:+34539 | Msa1431010:CDS |
| AATCACCAACGTTCATGAAT+TGG | 0.351836 | tig0026775:+34964 | Msa1431010:CDS |
| CTTTCCAATGCTGGAATTAG+TGG | 0.355413 | tig0026775:+34917 | Msa1431010:CDS |
| CATGAATTGGATGTGATTAC+TGG | 0.369964 | tig0026775:+34977 | Msa1431010:CDS |
| GTCTTTGAACACCCTTTGAT+TGG | 0.390776 | tig0026775:+34776 | Msa1431010:CDS |
| ATAATGAAGTCCAGGGATAT+AGG | 0.394085 | tig0026775:-38393 | None:intergenic |
| TCTTCTTGTGTGCTGTGGTT+AGG | 0.411365 | tig0026775:-38941 | None:intergenic |
| ATTGGTTACTATGTTGATGT+TGG | 0.419823 | tig0026775:+34794 | Msa1431010:CDS |
| AGTGGTCAGACGTTTCTTTA+CGG | 0.421013 | tig0026775:+34935 | Msa1431010:CDS |
| GCAGTAGATAATGCTGTGTT+TGG | 0.425996 | tig0026775:-37943 | None:intergenic |
| ATGTTGGAGGAGAACAACTA+TGG | 0.426776 | tig0026775:+34810 | Msa1431010:CDS |
| AGATAATCAGTCCAAGAAAC+AGG | 0.436827 | tig0026775:-34872 | None:intergenic |
| TCATGAACGTTGGTGATTTG+AGG | 0.440824 | tig0026775:-34959 | None:intergenic |
| TTCCTACGGTGGATATCAAA+CGG | 0.445255 | tig0026775:-34427 | None:intergenic |
| CATAATATGTAGCAAATTCA+AGG | 0.448202 | tig0026775:-37965 | None:intergenic |
| AGTCATGGCTTGTCCATTAG+TGG | 0.449428 | tig0026775:-34690 | None:intergenic |
| TCCTACGGTGGATATCAAAC+GGG | 0.453698 | tig0026775:-34426 | None:intergenic |
| CAGTATAACCGTACCGTTGT+GGG | 0.463521 | tig0026775:-36694 | None:intergenic |
| ACCACAGCACACAAGAAGAT+TGG | 0.465569 | tig0026775:+38945 | Msa1431010:CDS |
| AACCGTACCGTTGTGGGAGC+TGG | 0.467417 | tig0026775:-36688 | None:intergenic |
| GCTTCAGAAAACAAAGAAAA+GGG | 0.468438 | tig0026775:+34741 | Msa1431010:CDS |
| ATTATGTCTTGTATAGAAGA+TGG | 0.477377 | tig0026775:-34599 | None:intergenic |
| GTGTTAACATTGGCTAGCTC+TGG | 0.478418 | tig0026775:-34479 | None:intergenic |
| TCCAATCTTCTTGTGTGCTG+TGG | 0.478791 | tig0026775:-38946 | None:intergenic |
| AGCTTCAGAAAACAAAGAAA+AGG | 0.480651 | tig0026775:+34740 | Msa1431010:CDS |
| GGGCAAGGTCACTCCACTAA+TGG | 0.480811 | tig0026775:+34677 | Msa1431010:CDS |
| CATCACCAGTGGAACTGTCT+TGG | 0.486622 | tig0026775:+38589 | Msa1431010:CDS |
| GAACGGTTAATCTCAATCAA+TGG | 0.491339 | tig0026775:+37804 | Msa1431010:CDS |
| GGAGGAACACTTTCCAATGC+TGG | 0.491967 | tig0026775:+34908 | Msa1431010:CDS |
| TCCAGGTGATAAAATCATCC+TGG | 0.493495 | tig0026775:-39026 | None:intergenic |
| TTCTAGGATGGTCAGATTGA+GGG | 0.495813 | tig0026775:-37905 | None:intergenic |
| AGCTTCAGTCACAAGGATTG+TGG | 0.497703 | tig0026775:+38471 | Msa1431010:CDS |
| GAGGATGTCTTCTACACAGT+TGG | 0.497926 | tig0026775:+38812 | Msa1431010:CDS |
| AGTGGAGTGACCTTGCCCTC+TGG | 0.499286 | tig0026775:-34672 | None:intergenic |
| TATCTTTACCTGACGGTTGG+AGG | 0.504841 | tig0026775:+34890 | Msa1431010:CDS |
| GGTATGAATAAATTAAGCCA+TGG | 0.512499 | tig0026775:-38506 | None:intergenic |
| GCTTCAGTCACAAGGATTGT+GGG | 0.515662 | tig0026775:+38472 | Msa1431010:CDS |
| ATTCTAGGATGGTCAGATTG+AGG | 0.517004 | tig0026775:-37906 | None:intergenic |
| GATTATCTTTACCTGACGGT+TGG | 0.521491 | tig0026775:+34887 | Msa1431010:CDS |
| TGTGGGAAGTTCCTCACCCA+TGG | 0.522276 | tig0026775:+38489 | Msa1431010:CDS |
| GGTTACTATGTTGATGTTGG+AGG | 0.524528 | tig0026775:+34797 | Msa1431010:CDS |
| AAAGTGTTCCTCCAACCGTC+AGG | 0.525441 | tig0026775:-34898 | None:intergenic |
| CAACATAGTAACCAATCAAA+GGG | 0.525726 | tig0026775:-34787 | None:intergenic |
| GACTGATTATCTTTACCTGA+CGG | 0.526021 | tig0026775:+34883 | Msa1431010:CDS |
| TGGCATGTATACAGGTTAAG+TGG | 0.526926 | tig0026775:+37736 | Msa1431010:intron |
| GGACAAGCCATGACTCATGA+TGG | 0.533340 | tig0026775:+34698 | Msa1431010:CDS |
| TTAAATCCAGGTGGGACGAT+AGG | 0.539047 | tig0026775:+38768 | Msa1431010:intron |
| GTTGGATTCTTACACTCAAG+TGG | 0.539696 | tig0026775:+38830 | Msa1431010:CDS |
| TCAACATAGTAACCAATCAA+AGG | 0.543035 | tig0026775:-34788 | None:intergenic |
| GTGTAGAAGACATCCTCGTT+TGG | 0.543503 | tig0026775:-38806 | None:intergenic |
| GGTTGATATGGTGTTAACAT+TGG | 0.549802 | tig0026775:-34489 | None:intergenic |
| CTGACCACTAATTCCAGCAT+TGG | 0.549832 | tig0026775:-34921 | None:intergenic |
| TTAACATTGGCTAGCTCTGG+TGG | 0.549917 | tig0026775:-34476 | None:intergenic |
| TTATATCACGCGGTTCTTGG+AGG | 0.553109 | tig0026775:+36619 | Msa1431010:CDS |
| GGTTAATCTCAATCAATGGA+AGG | 0.556622 | tig0026775:+37808 | Msa1431010:CDS |
| GACAATTTGGAGTTATAACA+AGG | 0.558388 | tig0026775:+36647 | Msa1431010:CDS |
| TTAAAGAAGCTATTCTAGGA+TGG | 0.561768 | tig0026775:-37917 | None:intergenic |
| GTATGAATAAATTAAGCCAT+GGG | 0.562092 | tig0026775:-38505 | None:intergenic |
| CAAGGACTAGCCTATATCCC+TGG | 0.572971 | tig0026775:+38383 | Msa1431010:CDS |
| ACTATAGCAGCCAGAGGGCA+AGG | 0.575490 | tig0026775:+34662 | Msa1431010:CDS |
| CCAGGTGATAAAATCATCCT+GGG | 0.575746 | tig0026775:-39025 | None:intergenic |
| CCTCTGGCTGCTATAGTGAA+AGG | 0.577125 | tig0026775:-34656 | None:intergenic |
| GTTAATCTCAATCAATGGAA+GGG | 0.578188 | tig0026775:+37809 | Msa1431010:CDS |
| AGATTGAGGGAAGAAATTAG+AGG | 0.583674 | tig0026775:-37892 | None:intergenic |
| GAGTTGAAGCTTCAGTCACA+AGG | 0.583991 | tig0026775:+38464 | Msa1431010:CDS |
| TACAATTCCATCATGAGTCA+TGG | 0.584996 | tig0026775:-34705 | None:intergenic |
| TTGTATGCAACTCTTGAACA+TGG | 0.595290 | tig0026775:+34842 | Msa1431010:CDS |
| ACAAGCACAAGTTTGATCCC+AGG | 0.598194 | tig0026775:+39008 | Msa1431010:CDS |
| CACATCCAATTCATGAACGT+TGG | 0.600239 | tig0026775:-34969 | None:intergenic |
| AATAAATTAAGCCATGGGTG+AGG | 0.606021 | tig0026775:-38500 | None:intergenic |
| GTAAACCAAGACAGTTCCAC+TGG | 0.612320 | tig0026775:-38594 | None:intergenic |
| TTCTTGAATAGAGTCCGAAG+TGG | 0.613739 | tig0026775:+38440 | Msa1431010:CDS |
| TCAGTATAACCGTACCGTTG+TGG | 0.626101 | tig0026775:-36695 | None:intergenic |
| ATCCGAGAAAATGGTGGACA+AGG | 0.628901 | tig0026775:+37995 | Msa1431010:CDS |
| CTTCAGAAAACAAAGAAAAG+GGG | 0.634602 | tig0026775:+34742 | Msa1431010:CDS |
| ATTAAAAGAAACATCACCAG+TGG | 0.637357 | tig0026775:+38578 | Msa1431010:CDS |
| GAAGCTTCAACTCTCCACTT+CGG | 0.640974 | tig0026775:-38454 | None:intergenic |
| ACAATTTGGAGTTATAACAA+GGG | 0.641357 | tig0026775:+36648 | Msa1431010:CDS |
| TCATCAATCCGAGAAAATGG+TGG | 0.643829 | tig0026775:+37989 | Msa1431010:CDS |
| GGGATGCTGCTAATGCAACA+AGG | 0.647362 | tig0026775:+37849 | Msa1431010:CDS |
| CTTTCACTATAGCAGCCAGA+GGG | 0.652699 | tig0026775:+34657 | Msa1431010:CDS |
| CCTTTCACTATAGCAGCCAG+AGG | 0.655121 | tig0026775:+34656 | Msa1431010:CDS |
| GAATTCAGAGTTATATCACG+CGG | 0.664876 | tig0026775:+36609 | Msa1431010:CDS |
| TCTTCAGCCAGCTCCCACAA+CGG | 0.665337 | tig0026775:+36681 | Msa1431010:CDS |
| TGATGGAATTGTAGTTGACA+TGG | 0.672980 | tig0026775:+34715 | Msa1431010:CDS |
| ACCCGTTTGATATCCACCGT+AGG | 0.704257 | tig0026775:+34425 | Msa1431010:CDS |
| GTCAGCAATGATACCAAACG+AGG | 0.778680 | tig0026775:+38793 | Msa1431010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | tig0026775:35996-36015 | None:intergenic | 0.0% |
| !!! | TATTTTTATCTTAAAAAGAA+AGG | + | tig0026775:36107-36126 | Msa1431010:intron | 10.0% |
| !!! | ATTTTTATCTTAAAAAGAAA+GGG | + | tig0026775:36108-36127 | Msa1431010:intron | 10.0% |
| !!! | TAAAGTTTAATTTTATCATT+GGG | + | tig0026775:38181-38200 | Msa1431010:intron | 10.0% |
| !!! | AAAAAATATATTTTATCTTC+TGG | - | tig0026775:38252-38271 | None:intergenic | 10.0% |
| !!! | ATTGTATGAGATTTTAATTA+AGG | - | tig0026775:34627-34646 | None:intergenic | 15.0% |
| !!! | AAATATTTCACACTAATTTT+TGG | + | tig0026775:35132-35151 | Msa1431010:intron | 15.0% |
| !!! | ATATAATCAGCTTTTTTTAA+TGG | + | tig0026775:35388-35407 | Msa1431010:intron | 15.0% |
| !! | AATTAAAAAATTGAAGTCTT+GGG | - | tig0026775:35462-35481 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTAATTCAAACA+AGG | + | tig0026775:35468-35487 | Msa1431010:intron | 15.0% |
| !! | ACAAATAATTAATTAAGACT+TGG | - | tig0026775:36392-36411 | None:intergenic | 15.0% |
| !!! | TTTCTTAAGTTTTTTCTATA+TGG | - | tig0026775:36422-36441 | None:intergenic | 15.0% |
| !! | ATTTAATTGAATAATAGTTG+TGG | + | tig0026775:36522-36541 | Msa1431010:intron | 15.0% |
| !! | ATATTCACAAATGAATATAT+AGG | + | tig0026775:36921-36940 | Msa1431010:intron | 15.0% |
| !!! | TTAAAATTAGTCATCTTTTT+AGG | + | tig0026775:37244-37263 | Msa1431010:intron | 15.0% |
| !!! | GTGATTTTTGAATATTTATA+TGG | - | tig0026775:37475-37494 | None:intergenic | 15.0% |
| !! | GTATACATAATTAAACAATA+CGG | - | tig0026775:37666-37685 | None:intergenic | 15.0% |
| !!! | AACTATTATCTTTTTCAATT+AGG | - | tig0026775:38052-38071 | None:intergenic | 15.0% |
| !! | CAATGATAAAATTAAACTTT+AGG | - | tig0026775:38182-38201 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTAATTTTATCAT+TGG | + | tig0026775:38180-38199 | Msa1431010:intron | 15.0% |
| !!! | AATTACAATATTTTATCTCT+TGG | - | tig0026775:38283-38302 | None:intergenic | 15.0% |
| !! | AGTTATTAGTAGTATGAAAT+AGG | - | tig0026775:34402-34421 | None:intergenic | 20.0% |
| !!! | TTTTGTCACTTTTTCAAATT+TGG | + | tig0026775:35040-35059 | Msa1431010:intron | 20.0% |
| !! | TTTATGCACATTTAATGTTA+TGG | - | tig0026775:35287-35306 | None:intergenic | 20.0% |
| !! | GAATTAAAAAATTGAAGTCT+TGG | - | tig0026775:35463-35482 | None:intergenic | 20.0% |
| !!! | TCTATGATATAATGGATTAT+TGG | + | tig0026775:35509-35528 | Msa1431010:intron | 20.0% |
| !!! | AAGTTTTTAATTCCTTTTTG+CGG | - | tig0026775:35547-35566 | None:intergenic | 20.0% |
| !!! | TCTTTATTTTTCTCTCTTTA+AGG | - | tig0026775:35778-35797 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAGTTAACTCT+CGG | - | tig0026775:35897-35916 | None:intergenic | 20.0% |
| !!! | AAAATGTTGTTAACTTGTTA+TGG | + | tig0026775:35943-35962 | Msa1431010:intron | 20.0% |
| !!! | AAATGTTGTTAACTTGTTAT+GGG | + | tig0026775:35944-35963 | Msa1431010:intron | 20.0% |
| !! | ATATATATATATATGGCAAC+TGG | - | tig0026775:35989-36008 | None:intergenic | 20.0% |
| !! | TCAGCATTACTAATAATAAT+TGG | + | tig0026775:36187-36206 | Msa1431010:intron | 20.0% |
| !! | CAGCATTACTAATAATAATT+GGG | + | tig0026775:36188-36207 | Msa1431010:intron | 20.0% |
| !!! | AGTCATTATGTTTTTTTGTT+TGG | + | tig0026775:36214-36233 | Msa1431010:intron | 20.0% |
| !!! | TTCCTTTTTCTTTTTCTTTT+GGG | + | tig0026775:36318-36337 | Msa1431010:intron | 20.0% |
| !! | AATATGTCAAATACATCTAA+AGG | + | tig0026775:37053-37072 | Msa1431010:intron | 20.0% |
| !!! | AAAACTAAAATGACTTGTTT+GGG | - | tig0026775:37129-37148 | None:intergenic | 20.0% |
| !!! | AAAAACTAAAATGACTTGTT+TGG | - | tig0026775:37130-37149 | None:intergenic | 20.0% |
| !!! | AAAGATGACTAATTTTAAGT+GGG | - | tig0026775:37242-37261 | None:intergenic | 20.0% |
| !!! | AAAAGATGACTAATTTTAAG+TGG | - | tig0026775:37243-37262 | None:intergenic | 20.0% |
| !!! | GAATCTTGTATTCTTTTTTT+TGG | + | tig0026775:37512-37531 | Msa1431010:intron | 20.0% |
| !! | GATAAATCATAATATATGCA+TGG | - | tig0026775:37563-37582 | None:intergenic | 20.0% |
| !!! | ATCTTGTATTCTAATTTTGA+CGG | + | tig0026775:37611-37630 | Msa1431010:intron | 20.0% |
| !! | TTAGTATAAGACATTAGTAA+TGG | + | tig0026775:37702-37721 | Msa1431010:intron | 20.0% |
| !! | ATTAAAGAAAATCCAATAGA+CGG | - | tig0026775:38023-38042 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTTTGTTTATGT+AGG | + | tig0026775:38343-38362 | Msa1431010:intron | 20.0% |
| !!! | AAATCCAATATTTGAGATTT+TGG | - | tig0026775:38530-38549 | None:intergenic | 20.0% |
| !!! | CAAATATTGGATTTTAATTC+AGG | + | tig0026775:38536-38555 | Msa1431010:CDS | 20.0% |
| !! | CAATAACAATTAAGAAAAGA+AGG | + | tig0026775:38717-38736 | Msa1431010:intron | 20.0% |
| !! | ATTACATGAAATTTAAATCC+AGG | + | tig0026775:38756-38775 | Msa1431010:intron | 20.0% |
| ! | GTATGAAATAGGTGAAAAAA+GGG | - | tig0026775:34391-34410 | None:intergenic | 25.0% |
| ! | AGTATGAAATAGGTGAAAAA+AGG | - | tig0026775:34392-34411 | None:intergenic | 25.0% |
| !!! | AAGCAATTTTGATGGTTTTA+GGG | - | tig0026775:34529-34548 | None:intergenic | 25.0% |
| ! | ATTATGTCTTGTATAGAAGA+TGG | - | tig0026775:34602-34621 | None:intergenic | 25.0% |
| !!! | TTAGATTTTTCAATACTGTG+AGG | - | tig0026775:35239-35258 | None:intergenic | 25.0% |
| ! | AATGGTAAATGTTAGTTGTT+AGG | + | tig0026775:35406-35425 | Msa1431010:intron | 25.0% |
| !! | TTAATTTTTCCTCTTTTGTC+TGG | + | tig0026775:35429-35448 | Msa1431010:intron | 25.0% |
| !! | TAATTTTTCCTCTTTTGTCT+GGG | + | tig0026775:35430-35449 | Msa1431010:intron | 25.0% |
| ! | TAATCCATTATATCATAGAG+AGG | - | tig0026775:35508-35527 | None:intergenic | 25.0% |
| ! | ATTTGTATTTCTCTCTCTTA+AGG | - | tig0026775:35675-35694 | None:intergenic | 25.0% |
| ! | TTAAGGTTATCGCTAAAATT+GGG | - | tig0026775:35873-35892 | None:intergenic | 25.0% |
| !! | TTTAAGGTTATCGCTAAAAT+TGG | - | tig0026775:35874-35893 | None:intergenic | 25.0% |
| ! | TATAGAATAGACAAAGACTA+TGG | - | tig0026775:36243-36262 | None:intergenic | 25.0% |
| ! | ATAGTCTTTGTCTATTCTAT+AGG | + | tig0026775:36242-36261 | Msa1431010:intron | 25.0% |
| !! | CTTCCTTTTTCTTTTTCTTT+TGG | + | tig0026775:36317-36336 | Msa1431010:intron | 25.0% |
| !! | TCCTTTTTCTTTTTCTTTTG+GGG | + | tig0026775:36319-36338 | Msa1431010:intron | 25.0% |
| ! | CTTAAGAAATTACTAAGAAG+CGG | + | tig0026775:36433-36452 | Msa1431010:intron | 25.0% |
| !! | ACAATTTGGAGTTATAACAA+GGG | + | tig0026775:36648-36667 | Msa1431010:CDS | 25.0% |
| ! | TTAACAATACTAGTAGATTG+TGG | - | tig0026775:36834-36853 | None:intergenic | 25.0% |
| ! | ACTAGTATTGTTAACATTCT+TGG | + | tig0026775:36840-36859 | Msa1431010:intron | 25.0% |
| ! | AGGAAAAACGAAAAACTTAA+AGG | - | tig0026775:37080-37099 | None:intergenic | 25.0% |
| ! | GAAACGATTCAAAAACTAAA+AGG | + | tig0026775:37342-37361 | Msa1431010:intron | 25.0% |
| !!! | TTGAGACTTTTGAAACTTAA+AGG | + | tig0026775:37371-37390 | Msa1431010:intron | 25.0% |
| ! | TGAAACTTAAAGGACTTATT+TGG | + | tig0026775:37381-37400 | Msa1431010:intron | 25.0% |
| ! | GAAACTTAAAGGACTTATTT+GGG | + | tig0026775:37382-37401 | Msa1431010:intron | 25.0% |
| !!! | TCTTGTATTCTTTTTTTTGG+TGG | + | tig0026775:37515-37534 | Msa1431010:intron | 25.0% |
| !! | ACATTAGTAATGGTGAATTT+TGG | + | tig0026775:37712-37731 | Msa1431010:intron | 25.0% |
| ! | GTTATTAAAGAAGCTATTCT+AGG | - | tig0026775:37924-37943 | None:intergenic | 25.0% |
| ! | CATAATATGTAGCAAATTCA+AGG | - | tig0026775:37968-37987 | None:intergenic | 25.0% |
| ! | GTATGAATAAATTAAGCCAT+GGG | - | tig0026775:38508-38527 | None:intergenic | 25.0% |
| ! | CATACCAAAATCTCAAATAT+TGG | + | tig0026775:38523-38542 | Msa1431010:CDS | 25.0% |
| !!! | TTTTAATTCAGGTGTATTCA+AGG | + | tig0026775:38547-38566 | Msa1431010:CDS | 25.0% |
| !!! | CTTACTTTGTTTTATTCATG+GGG | - | tig0026775:38619-38638 | None:intergenic | 25.0% |
| !!! | GCTTACTTTGTTTTATTCAT+GGG | - | tig0026775:38620-38639 | None:intergenic | 25.0% |
| !! | GAAGATTGGAAAAAACATTT+TGG | + | tig0026775:38959-38978 | Msa1431010:CDS | 25.0% |
| !!! | AAAAACATTTTGGCACTAAA+TGG | + | tig0026775:38969-38988 | Msa1431010:CDS | 25.0% |
| !! | GAAGCAATTTTGATGGTTTT+AGG | - | tig0026775:34530-34549 | None:intergenic | 30.0% |
| AAAATTGCTTCTAGTGACTA+TGG | + | tig0026775:34539-34558 | Msa1431010:CDS | 30.0% | |
| ATGGATGAAAAACTGCTATT+GGG | - | tig0026775:34583-34602 | None:intergenic | 30.0% | |
| AGCTTCAGAAAACAAAGAAA+AGG | + | tig0026775:34740-34759 | Msa1431010:CDS | 30.0% | |
| GCTTCAGAAAACAAAGAAAA+GGG | + | tig0026775:34741-34760 | Msa1431010:CDS | 30.0% | |
| CTTCAGAAAACAAAGAAAAG+GGG | + | tig0026775:34742-34761 | Msa1431010:CDS | 30.0% | |
| CAACATAGTAACCAATCAAA+GGG | - | tig0026775:34790-34809 | None:intergenic | 30.0% | |
| TCAACATAGTAACCAATCAA+AGG | - | tig0026775:34791-34810 | None:intergenic | 30.0% | |
| ATTGGTTACTATGTTGATGT+TGG | + | tig0026775:34794-34813 | Msa1431010:CDS | 30.0% | |
| ! | CTTTAGTAGAGTACTACTTA+TGG | + | tig0026775:35078-35097 | Msa1431010:intron | 30.0% |
| TTATATCATAGAGAGGAGTT+GGG | - | tig0026775:35501-35520 | None:intergenic | 30.0% | |
| ATTATATCATAGAGAGGAGT+TGG | - | tig0026775:35502-35521 | None:intergenic | 30.0% | |
| AACTCCTCTCTATGATATAA+TGG | + | tig0026775:35501-35520 | Msa1431010:intron | 30.0% | |
| TAAGGTTATCGCTAAAATTG+GGG | - | tig0026775:35872-35891 | None:intergenic | 30.0% | |
| ATAAGTTAACTCTCGGTTTA+AGG | - | tig0026775:35890-35909 | None:intergenic | 30.0% | |
| TCTTAAAAAGAAAGGGACTA+CGG | + | tig0026775:36115-36134 | Msa1431010:intron | 30.0% | |
| ! | ACTACGGTAATCTAAAATTG+AGG | + | tig0026775:36131-36150 | Msa1431010:intron | 30.0% |
| TGTGAACTCATTCTAACTTA+TGG | - | tig0026775:36287-36306 | None:intergenic | 30.0% | |
| GAAAAAGAAAAAGGAAGACT+TGG | - | tig0026775:36314-36333 | None:intergenic | 30.0% | |
| ACCCCAAAAGAAAAAGAAAA+AGG | - | tig0026775:36323-36342 | None:intergenic | 30.0% | |
| TTTGTCAAGAATAGAAGACT+TGG | - | tig0026775:36354-36373 | None:intergenic | 30.0% | |
| ATGCATACATCAAGAACTAA+CGG | - | tig0026775:36473-36492 | None:intergenic | 30.0% | |
| ! | GACAATTTGGAGTTATAACA+AGG | + | tig0026775:36647-36666 | Msa1431010:CDS | 30.0% |
| !! | TAGATTTGGTGTACATTTGT+TGG | - | tig0026775:36762-36781 | None:intergenic | 30.0% |
| TATATATGTGATCGACAACT+AGG | - | tig0026775:36785-36804 | None:intergenic | 30.0% | |
| TTGTGAATATAAGCCTTTCA+CGG | - | tig0026775:36911-36930 | None:intergenic | 30.0% | |
| ATAGTATGAATCGTTGAATG+TGG | + | tig0026775:36997-37016 | Msa1431010:intron | 30.0% | |
| !! | GTTTTTCGTTTTTCCTAAAG+TGG | + | tig0026775:37084-37103 | Msa1431010:intron | 30.0% |
| !!! | TTGGGACTTTTGAAACTTAA+AGG | - | tig0026775:37400-37419 | None:intergenic | 30.0% |
| CCAACTATGCTATCTATAAT+AGG | - | tig0026775:37171-37190 | None:intergenic | 30.0% | |
| CCTATTATAGATAGCATAGT+TGG | + | tig0026775:37168-37187 | Msa1431010:intron | 30.0% | |
| !! | ACTAATTTTAAGTGGGTGTT+AGG | - | tig0026775:37235-37254 | None:intergenic | 30.0% |
| !! | ATTAGTCATCTTTTTAGGCA+TGG | + | tig0026775:37249-37268 | Msa1431010:intron | 30.0% |
| ! | TTTCAAACAAGTCCTTTTAG+AGG | - | tig0026775:37326-37345 | None:intergenic | 30.0% |
| TGAAACTTAAATGACCACTT+TGG | + | tig0026775:37410-37429 | Msa1431010:intron | 30.0% | |
| GAAACTTAAATGACCACTTT+GGG | + | tig0026775:37411-37430 | Msa1431010:intron | 30.0% | |
| GGGAAAAACGAAAAACTTAA+AGG | + | tig0026775:37431-37450 | Msa1431010:intron | 30.0% | |
| ATATGGTCAAATGCATCTAA+AGG | - | tig0026775:37458-37477 | None:intergenic | 30.0% | |
| !! | TAGTAATGGTGAATTTTGGT+TGG | + | tig0026775:37716-37735 | Msa1431010:intron | 30.0% |
| GTTAATCTCAATCAATGGAA+GGG | + | tig0026775:37809-37828 | Msa1431010:CDS | 30.0% | |
| AACAAGGCTCCATAAATAAT+TGG | + | tig0026775:37865-37884 | Msa1431010:CDS | 30.0% | |
| AGAGGATCTCCAATTATTTA+TGG | - | tig0026775:37877-37896 | None:intergenic | 30.0% | |
| ! | TTAAAGAAGCTATTCTAGGA+TGG | - | tig0026775:37920-37939 | None:intergenic | 30.0% |
| !!! | AGCAATAACTTTTTGCTGTT+AGG | + | tig0026775:38156-38175 | Msa1431010:intron | 30.0% |
| TAGTCAAGATTAAACGTCTA+GGG | - | tig0026775:38223-38242 | None:intergenic | 30.0% | |
| ! | GAAATTGACATTTTGCTTCA+AGG | + | tig0026775:38365-38384 | Msa1431010:CDS | 30.0% |
| ! | TTTTCTCATAATGAAGTCCA+GGG | - | tig0026775:38403-38422 | None:intergenic | 30.0% |
| ! | TTTTTCTCATAATGAAGTCC+AGG | - | tig0026775:38404-38423 | None:intergenic | 30.0% |
| TGGACTTCATTATGAGAAAA+AGG | + | tig0026775:38403-38422 | Msa1431010:CDS | 30.0% | |
| GGTATGAATAAATTAAGCCA+TGG | - | tig0026775:38509-38528 | None:intergenic | 30.0% | |
| ATTAAAAGAAACATCACCAG+TGG | + | tig0026775:38578-38597 | Msa1431010:CDS | 30.0% | |
| !!! | GGCTTACTTTGTTTTATTCA+TGG | - | tig0026775:38621-38640 | None:intergenic | 30.0% |
| CAAAGTATATGGCATTTCAA+AGG | - | tig0026775:38642-38661 | None:intergenic | 30.0% | |
| TCATGATGACTCAAAGTATA+TGG | - | tig0026775:38653-38672 | None:intergenic | 30.0% | |
| ACATGAAATTTAAATCCAGG+TGG | + | tig0026775:38759-38778 | Msa1431010:intron | 30.0% | |
| CATGAAATTTAAATCCAGGT+GGG | + | tig0026775:38760-38779 | Msa1431010:intron | 30.0% | |
| ! | ACTCAAGTGGATTTGATAAT+TGG | + | tig0026775:38843-38862 | Msa1431010:CDS | 30.0% |
| !!! | TTGTTGAAGATTTTTTGTCC+AGG | - | tig0026775:39046-39065 | None:intergenic | 30.0% |
| ! | GGTTGATATGGTGTTAACAT+TGG | - | tig0026775:34492-34511 | None:intergenic | 35.0% |
| ! | GTTATGGAGTTTGGTTGATA+TGG | - | tig0026775:34504-34523 | None:intergenic | 35.0% |
| ! | GTCACTAGAAGCAATTTTGA+TGG | - | tig0026775:34537-34556 | None:intergenic | 35.0% |
| GATGGATGAAAAACTGCTAT+TGG | - | tig0026775:34584-34603 | None:intergenic | 35.0% | |
| TACAATTCCATCATGAGTCA+TGG | - | tig0026775:34708-34727 | None:intergenic | 35.0% | |
| TGATGGAATTGTAGTTGACA+TGG | + | tig0026775:34715-34734 | Msa1431010:CDS | 35.0% | |
| TTGTATGCAACTCTTGAACA+TGG | + | tig0026775:34842-34861 | Msa1431010:CDS | 35.0% | |
| AGATAATCAGTCCAAGAAAC+AGG | - | tig0026775:34875-34894 | None:intergenic | 35.0% | |
| GACTGATTATCTTTACCTGA+CGG | + | tig0026775:34883-34902 | Msa1431010:CDS | 35.0% | |
| AATCACCAACGTTCATGAAT+TGG | + | tig0026775:34964-34983 | Msa1431010:CDS | 35.0% | |
| CATGAATTGGATGTGATTAC+TGG | + | tig0026775:34977-34996 | Msa1431010:CDS | 35.0% | |
| ATATACTCTACTCCGCAAAA+AGG | + | tig0026775:35532-35551 | Msa1431010:intron | 35.0% | |
| TCTCTCTTAAGGTGTATTGT+TGG | - | tig0026775:35664-35683 | None:intergenic | 35.0% | |
| !! | CTCTCTTTAAGGTGTATTGT+TGG | - | tig0026775:35767-35786 | None:intergenic | 35.0% |
| CTTGACAAACATGTGTATGT+TGG | + | tig0026775:36365-36384 | Msa1431010:intron | 35.0% | |
| GGTATGTTTGATTCAGGAAA+AGG | + | tig0026775:36559-36578 | Msa1431010:intron | 35.0% | |
| GAATTCAGAGTTATATCACG+CGG | + | tig0026775:36609-36628 | Msa1431010:CDS | 35.0% | |
| ATACTAGTAGATTGTGGACA+AGG | - | tig0026775:36828-36847 | None:intergenic | 35.0% | |
| GAAACTTAAAGGACCACTTT+AGG | - | tig0026775:37100-37119 | None:intergenic | 35.0% | |
| !! | ATCTTTTTAGGCATGGCAAA+TGG | + | tig0026775:37256-37275 | Msa1431010:intron | 35.0% |
| CATCATCATCATCCTCTAAA+AGG | + | tig0026775:37311-37330 | Msa1431010:intron | 35.0% | |
| !! | GTTTTTCGTTTTTCCCAAAG+TGG | - | tig0026775:37427-37446 | None:intergenic | 35.0% |
| CATAATATATGCATGGTCCA+GGG | - | tig0026775:37556-37575 | None:intergenic | 35.0% | |
| TCATAATATATGCATGGTCC+AGG | - | tig0026775:37557-37576 | None:intergenic | 35.0% | |
| TGATCTTAACTCACTTGGTA+AGG | - | tig0026775:37585-37604 | None:intergenic | 35.0% | |
| TACCAAGTGAGTTAAGATCA+CGG | + | tig0026775:37585-37604 | Msa1431010:intron | 35.0% | |
| !!! | ATTTTGGTTGGCATGTATAC+AGG | + | tig0026775:37728-37747 | Msa1431010:intron | 35.0% |
| !! | TTCTGCTTTTACCAAAGATC+AGG | + | tig0026775:37782-37801 | Msa1431010:CDS | 35.0% |
| ! | CTTTTACCAAAGATCAGGAA+CGG | + | tig0026775:37787-37806 | Msa1431010:CDS | 35.0% |
| GAACGGTTAATCTCAATCAA+TGG | + | tig0026775:37804-37823 | Msa1431010:CDS | 35.0% | |
| GGTTAATCTCAATCAATGGA+AGG | + | tig0026775:37808-37827 | Msa1431010:CDS | 35.0% | |
| ! | TGGAAGGGAATTGAACTTTT+TGG | + | tig0026775:37824-37843 | Msa1431010:CDS | 35.0% |
| ! | AGGGAATTGAACTTTTTGGA+AGG | + | tig0026775:37828-37847 | Msa1431010:CDS | 35.0% |
| !! | GGGAATTGAACTTTTTGGAA+GGG | + | tig0026775:37829-37848 | Msa1431010:CDS | 35.0% |
| AGATTGAGGGAAGAAATTAG+AGG | - | tig0026775:37895-37914 | None:intergenic | 35.0% | |
| TGATCATCAATCCGAGAAAA+TGG | + | tig0026775:37986-38005 | Msa1431010:CDS | 35.0% | |
| CTAGTCAAGATTAAACGTCT+AGG | - | tig0026775:38224-38243 | None:intergenic | 35.0% | |
| ATAATGAAGTCCAGGGATAT+AGG | - | tig0026775:38396-38415 | None:intergenic | 35.0% | |
| AATAAATTAAGCCATGGGTG+AGG | - | tig0026775:38503-38522 | None:intergenic | 35.0% | |
| !! | TTGAAGTTTTGTAGTGATGC+TGG | + | tig0026775:38896-38915 | Msa1431010:CDS | 35.0% |
| CACTAAATGGAAGAGTTTCT+TGG | + | tig0026775:38982-39001 | Msa1431010:CDS | 35.0% | |
| TTCCTACGGTGGATATCAAA+CGG | - | tig0026775:34430-34449 | None:intergenic | 40.0% | |
| !! | TAGCAGAGTTTTGCACTGAT+CGG | - | tig0026775:34456-34475 | None:intergenic | 40.0% |
| ! | TTTAGGGTCGTTATGGAGTT+TGG | - | tig0026775:34513-34532 | None:intergenic | 40.0% |
| !!! | TGATGGTTTTAGGGTCGTTA+TGG | - | tig0026775:34520-34539 | None:intergenic | 40.0% |
| GTCTTTGAACACCCTTTGAT+TGG | + | tig0026775:34776-34795 | Msa1431010:CDS | 40.0% | |
| GGTTACTATGTTGATGTTGG+AGG | + | tig0026775:34797-34816 | Msa1431010:CDS | 40.0% | |
| ATGTTGGAGGAGAACAACTA+TGG | + | tig0026775:34810-34829 | Msa1431010:CDS | 40.0% | |
| GATTATCTTTACCTGACGGT+TGG | + | tig0026775:34887-34906 | Msa1431010:CDS | 40.0% | |
| CTTTCCAATGCTGGAATTAG+TGG | + | tig0026775:34917-34936 | Msa1431010:CDS | 40.0% | |
| AGTGGTCAGACGTTTCTTTA+CGG | + | tig0026775:34935-34954 | Msa1431010:CDS | 40.0% | |
| !! | TCATGAACGTTGGTGATTTG+AGG | - | tig0026775:34962-34981 | None:intergenic | 40.0% |
| CACATCCAATTCATGAACGT+TGG | - | tig0026775:34972-34991 | None:intergenic | 40.0% | |
| !!! | CTTTTTCTTTTGGGGTACTG+CGG | + | tig0026775:36327-36346 | Msa1431010:intron | 40.0% |
| GAAATTACTAAGAAGCGGCA+TGG | + | tig0026775:36438-36457 | Msa1431010:intron | 40.0% | |
| AGTTGTGGTCATCTATCGAA+TGG | + | tig0026775:36537-36556 | Msa1431010:intron | 40.0% | |
| GTTGTGGTCATCTATCGAAT+GGG | + | tig0026775:36538-36557 | Msa1431010:intron | 40.0% | |
| CGAATGGGTATGTTTGATTC+AGG | + | tig0026775:36553-36572 | Msa1431010:intron | 40.0% | |
| ! | CTTGGAGGTTTAGGACAATT+TGG | + | tig0026775:36634-36653 | Msa1431010:CDS | 40.0% |
| GATCGACAACTAGGTAGATT+TGG | - | tig0026775:36776-36795 | None:intergenic | 40.0% | |
| TTCCATTAGTCATCCGTGAA+AGG | + | tig0026775:36895-36914 | Msa1431010:intron | 40.0% | |
| TGCTTCCTTGAAGTCATCTT+TGG | + | tig0026775:37195-37214 | Msa1431010:intron | 40.0% | |
| TGGTACCAAAGATGACTTCA+AGG | - | tig0026775:37203-37222 | None:intergenic | 40.0% | |
| GTCATCTTTGGTACCAAATC+TGG | + | tig0026775:37207-37226 | Msa1431010:intron | 40.0% | |
| !! | TTTTTAGGCATGGCAAATGG+TGG | + | tig0026775:37259-37278 | Msa1431010:intron | 40.0% |
| !!! | CTTTTTTTTGGTGGTGTCCA+AGG | + | tig0026775:37524-37543 | Msa1431010:intron | 40.0% |
| ACCAAGTGAGTTAAGATCAC+GGG | + | tig0026775:37586-37605 | Msa1431010:intron | 40.0% | |
| TGGCATGTATACAGGTTAAG+TGG | + | tig0026775:37736-37755 | Msa1431010:intron | 40.0% | |
| GATTAACCGTTCCTGATCTT+TGG | - | tig0026775:37796-37815 | None:intergenic | 40.0% | |
| !! | TTCTAGGATGGTCAGATTGA+GGG | - | tig0026775:37908-37927 | None:intergenic | 40.0% |
| !! | ATTCTAGGATGGTCAGATTG+AGG | - | tig0026775:37909-37928 | None:intergenic | 40.0% |
| GCAGTAGATAATGCTGTGTT+TGG | - | tig0026775:37946-37965 | None:intergenic | 40.0% | |
| TCATCAATCCGAGAAAATGG+TGG | + | tig0026775:37989-38008 | Msa1431010:CDS | 40.0% | |
| ! | TACCTTGTCCACCATTTTCT+CGG | - | tig0026775:38000-38019 | None:intergenic | 40.0% |
| TTCTTGAATAGAGTCCGAAG+TGG | + | tig0026775:38440-38459 | Msa1431010:CDS | 40.0% | |
| GTTGGATTCTTACACTCAAG+TGG | + | tig0026775:38830-38849 | Msa1431010:CDS | 40.0% | |
| CCAGGTGATAAAATCATCCT+GGG | - | tig0026775:39028-39047 | None:intergenic | 40.0% | |
| TCCAGGTGATAAAATCATCC+TGG | - | tig0026775:39029-39048 | None:intergenic | 40.0% | |
| TCCTACGGTGGATATCAAAC+GGG | - | tig0026775:34429-34448 | None:intergenic | 45.0% | |
| !! | GCACTGATCGGTTTTTCCTA+CGG | - | tig0026775:34444-34463 | None:intergenic | 45.0% |
| !! | TTAACATTGGCTAGCTCTGG+TGG | - | tig0026775:34479-34498 | None:intergenic | 45.0% |
| ! | GTGTTAACATTGGCTAGCTC+TGG | - | tig0026775:34482-34501 | None:intergenic | 45.0% |
| CTTTCACTATAGCAGCCAGA+GGG | + | tig0026775:34657-34676 | Msa1431010:CDS | 45.0% | |
| ! | AGTCATGGCTTGTCCATTAG+TGG | - | tig0026775:34693-34712 | None:intergenic | 45.0% |
| ! | ATGGACTTGCACCTGTTTCT+TGG | + | tig0026775:34861-34880 | Msa1431010:CDS | 45.0% |
| TATCTTTACCTGACGGTTGG+AGG | + | tig0026775:34890-34909 | Msa1431010:CDS | 45.0% | |
| CTGACCACTAATTCCAGCAT+TGG | - | tig0026775:34924-34943 | None:intergenic | 45.0% | |
| GGTTCAAACCCAGACAAAAG+AGG | - | tig0026775:35441-35460 | None:intergenic | 45.0% | |
| GAGTTATATCACGCGGTTCT+TGG | + | tig0026775:36616-36635 | Msa1431010:CDS | 45.0% | |
| TTATATCACGCGGTTCTTGG+AGG | + | tig0026775:36619-36638 | Msa1431010:CDS | 45.0% | |
| CAGTATAACCGTACCGTTGT+GGG | - | tig0026775:36697-36716 | None:intergenic | 45.0% | |
| TCAGTATAACCGTACCGTTG+TGG | - | tig0026775:36698-36717 | None:intergenic | 45.0% | |
| AGCCTTTCACGGATGACTAA+TGG | - | tig0026775:36900-36919 | None:intergenic | 45.0% | |
| CCAAGTGAGTTAAGATCACG+GGG | + | tig0026775:37587-37606 | Msa1431010:intron | 45.0% | |
| CAAGTGAGTTAAGATCACGG+GGG | + | tig0026775:37588-37607 | Msa1431010:intron | 45.0% | |
| !! | ATCCGAGAAAATGGTGGACA+AGG | + | tig0026775:37995-38014 | Msa1431010:CDS | 45.0% |
| GAAGCTTCAACTCTCCACTT+CGG | - | tig0026775:38457-38476 | None:intergenic | 45.0% | |
| GAGTTGAAGCTTCAGTCACA+AGG | + | tig0026775:38464-38483 | Msa1431010:CDS | 45.0% | |
| AGCTTCAGTCACAAGGATTG+TGG | + | tig0026775:38471-38490 | Msa1431010:CDS | 45.0% | |
| GCTTCAGTCACAAGGATTGT+GGG | + | tig0026775:38472-38491 | Msa1431010:CDS | 45.0% | |
| GTAAACCAAGACAGTTCCAC+TGG | - | tig0026775:38597-38616 | None:intergenic | 45.0% | |
| TTAAATCCAGGTGGGACGAT+AGG | + | tig0026775:38768-38787 | Msa1431010:intron | 45.0% | |
| GTCAGCAATGATACCAAACG+AGG | + | tig0026775:38793-38812 | Msa1431010:CDS | 45.0% | |
| GTGTAGAAGACATCCTCGTT+TGG | - | tig0026775:38809-38828 | None:intergenic | 45.0% | |
| GAGGATGTCTTCTACACAGT+TGG | + | tig0026775:38812-38831 | Msa1431010:CDS | 45.0% | |
| TCTTCTTGTGTGCTGTGGTT+AGG | - | tig0026775:38944-38963 | None:intergenic | 45.0% | |
| ACCACAGCACACAAGAAGAT+TGG | + | tig0026775:38945-38964 | Msa1431010:CDS | 45.0% | |
| TCCAATCTTCTTGTGTGCTG+TGG | - | tig0026775:38949-38968 | None:intergenic | 45.0% | |
| ACAAGCACAAGTTTGATCCC+AGG | + | tig0026775:39008-39027 | Msa1431010:CDS | 45.0% | |
| ! | CCCAGGATGATTTTATCACC+TGG | + | tig0026775:39025-39044 | Msa1431010:CDS | 45.0% |
| !!! | TTAATTTGAATTAAAAAAAA+AGG | - | tig0026775:35353-35372 | None:intergenic | 5.0% |
| ACCCGTTTGATATCCACCGT+AGG | + | tig0026775:34425-34444 | Msa1431010:CDS | 50.0% | |
| !! | CTGATCGGTTTTTCCTACGG+TGG | - | tig0026775:34441-34460 | None:intergenic | 50.0% |
| CCTCTGGCTGCTATAGTGAA+AGG | - | tig0026775:34659-34678 | None:intergenic | 50.0% | |
| CCTTTCACTATAGCAGCCAG+AGG | + | tig0026775:34656-34675 | Msa1431010:CDS | 50.0% | |
| GGACAAGCCATGACTCATGA+TGG | + | tig0026775:34698-34717 | Msa1431010:CDS | 50.0% | |
| ! | AAAGTGTTCCTCCAACCGTC+AGG | - | tig0026775:34901-34920 | None:intergenic | 50.0% |
| GGAGGAACACTTTCCAATGC+TGG | + | tig0026775:34908-34927 | Msa1431010:CDS | 50.0% | |
| TGGGTGTTAGGAGCCAGATT+TGG | - | tig0026775:37223-37242 | None:intergenic | 50.0% | |
| ATGGTCCAGGGTTCAAACCT+TGG | - | tig0026775:37544-37563 | None:intergenic | 50.0% | |
| CCCCGTGATCTTAACTCACT+TGG | - | tig0026775:37590-37609 | None:intergenic | 50.0% | |
| GGGATGCTGCTAATGCAACA+AGG | + | tig0026775:37849-37868 | Msa1431010:CDS | 50.0% | |
| !! | GTGGACAAGGTACCGTCTAT+TGG | + | tig0026775:38008-38027 | Msa1431010:intron | 50.0% |
| !! | CAAGGACTAGCCTATATCCC+TGG | + | tig0026775:38383-38402 | Msa1431010:CDS | 50.0% |
| CATCACCAGTGGAACTGTCT+TGG | + | tig0026775:38589-38608 | Msa1431010:CDS | 50.0% | |
| ACTATAGCAGCCAGAGGGCA+AGG | + | tig0026775:34662-34681 | Msa1431010:CDS | 55.0% | |
| GGGCAAGGTCACTCCACTAA+TGG | + | tig0026775:34677-34696 | Msa1431010:CDS | 55.0% | |
| CACGCGGTTCTTGGAGGTTT+AGG | + | tig0026775:36625-36644 | Msa1431010:CDS | 55.0% | |
| TCTTCAGCCAGCTCCCACAA+CGG | + | tig0026775:36681-36700 | Msa1431010:CDS | 55.0% | |
| GGTGTCCAAGGTTTGAACCC+TGG | + | tig0026775:37536-37555 | Msa1431010:intron | 55.0% | |
| TGTGGGAAGTTCCTCACCCA+TGG | + | tig0026775:38489-38508 | Msa1431010:CDS | 55.0% | |
| TGACATCCTATCGTCCCACC+TGG | - | tig0026775:38777-38796 | None:intergenic | 55.0% | |
| AGTGGAGTGACCTTGCCCTC+TGG | - | tig0026775:34675-34694 | None:intergenic | 60.0% | |
| AGCCAGCTCCCACAACGGTA+CGG | + | tig0026775:36686-36705 | Msa1431010:intron | 60.0% | |
| AACCGTACCGTTGTGGGAGC+TGG | - | tig0026775:36691-36710 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026775 | gene | 34374 | 39069 | 34374 | ID=Msa1431010;Name=Msa1431010 |
| tig0026775 | mRNA | 34374 | 39069 | 34374 | ID=Msa1431010-mRNA-1;Parent=Msa1431010;Name=Msa1431010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.6|1|1|1|5|0|526 |
| tig0026775 | exon | 34374 | 34998 | 34374 | ID=Msa1431010-mRNA-1:exon:7323;Parent=Msa1431010-mRNA-1 |
| tig0026775 | exon | 36575 | 36702 | 36575 | ID=Msa1431010-mRNA-1:exon:7324;Parent=Msa1431010-mRNA-1 |
| tig0026775 | exon | 37750 | 38016 | 37750 | ID=Msa1431010-mRNA-1:exon:7325;Parent=Msa1431010-mRNA-1 |
| tig0026775 | exon | 38365 | 38633 | 38365 | ID=Msa1431010-mRNA-1:exon:7326;Parent=Msa1431010-mRNA-1 |
| tig0026775 | exon | 38778 | 39069 | 38778 | ID=Msa1431010-mRNA-1:exon:7327;Parent=Msa1431010-mRNA-1 |
| tig0026775 | CDS | 34374 | 34998 | 34374 | ID=Msa1431010-mRNA-1:cds;Parent=Msa1431010-mRNA-1 |
| tig0026775 | CDS | 36575 | 36702 | 36575 | ID=Msa1431010-mRNA-1:cds;Parent=Msa1431010-mRNA-1 |
| tig0026775 | CDS | 37750 | 38016 | 37750 | ID=Msa1431010-mRNA-1:cds;Parent=Msa1431010-mRNA-1 |
| tig0026775 | CDS | 38365 | 38633 | 38365 | ID=Msa1431010-mRNA-1:cds;Parent=Msa1431010-mRNA-1 |
| tig0026775 | CDS | 38778 | 39069 | 38778 | ID=Msa1431010-mRNA-1:cds;Parent=Msa1431010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
