Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626690 | XP_003604324.2 | 76.596 | 188 | 37 | 4 | 1 | 186 | 1 | 183 | 1.08e-87 | 274 |
| Msa0626690 | XP_003604324.2 | 89.529 | 191 | 18 | 2 | 187 | 375 | 16 | 206 | 8.79e-110 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626690 | sp|Q9T072|BH025_ARATH | 40.244 | 164 | 84 | 5 | 223 | 373 | 163 | 325 | 8.80e-23 | 100 |
| Msa0626690 | sp|Q9T072|BH025_ARATH | 40.972 | 144 | 71 | 5 | 57 | 187 | 163 | 305 | 1.39e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626690 | G7JFR2 | 76.596 | 188 | 37 | 4 | 1 | 186 | 1 | 183 | 5.16e-88 | 274 |
| Msa0626690 | G7JFR2 | 89.529 | 191 | 18 | 2 | 187 | 375 | 16 | 206 | 4.20e-110 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626690 | Msa0663230 | 0.899604 | 1.681813e-77 | -8.615850e-47 |
| Msa0626690 | Msa0867980 | 0.908783 | 1.171889e-81 | -8.615850e-47 |
| Msa0626690 | Msa1040980 | 0.810751 | 9.864288e-51 | -8.615850e-47 |
| Msa0586680 | Msa0626690 | 0.889338 | 2.649334e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626690 | MtrunA17_Chr4g0002831 | 89.529 | 191 | 18 | 2 | 187 | 375 | 16 | 206 | 8.08e-114 | 330 |
| Msa0626690 | MtrunA17_Chr4g0002831 | 76.596 | 188 | 37 | 4 | 1 | 186 | 1 | 183 | 9.93e-92 | 274 |
| Msa0626690 | MtrunA17_Chr4g0002851 | 83.871 | 186 | 19 | 2 | 1 | 186 | 1 | 175 | 5.45e-103 | 302 |
| Msa0626690 | MtrunA17_Chr4g0002851 | 73.438 | 192 | 40 | 2 | 187 | 375 | 15 | 198 | 8.51e-90 | 268 |
| Msa0626690 | MtrunA17_Chr7g0233441 | 82.796 | 186 | 21 | 2 | 1 | 186 | 1 | 175 | 1.23e-99 | 293 |
| Msa0626690 | MtrunA17_Chr7g0233441 | 78.307 | 189 | 36 | 2 | 187 | 375 | 15 | 198 | 8.71e-96 | 284 |
| Msa0626690 | MtrunA17_Chr2g0333621 | 48.485 | 165 | 67 | 4 | 223 | 372 | 149 | 310 | 1.81e-36 | 134 |
| Msa0626690 | MtrunA17_Chr2g0333621 | 45.139 | 144 | 63 | 4 | 57 | 186 | 149 | 290 | 3.00e-25 | 104 |
| Msa0626690 | MtrunA17_Chr4g0002801 | 45.833 | 168 | 74 | 4 | 222 | 372 | 162 | 329 | 6.98e-35 | 130 |
| Msa0626690 | MtrunA17_Chr4g0002801 | 35.052 | 194 | 92 | 5 | 12 | 186 | 131 | 309 | 1.20e-21 | 94.7 |
| Msa0626690 | MtrunA17_Chr5g0400621 | 48.000 | 150 | 62 | 2 | 234 | 370 | 180 | 326 | 6.36e-33 | 125 |
| Msa0626690 | MtrunA17_Chr5g0400621 | 44.882 | 127 | 60 | 2 | 70 | 186 | 182 | 308 | 6.25e-21 | 92.4 |
| Msa0626690 | MtrunA17_Chr4g0002781 | 44.848 | 165 | 77 | 3 | 222 | 372 | 184 | 348 | 1.52e-32 | 125 |
| Msa0626690 | MtrunA17_Chr4g0002781 | 40.816 | 147 | 69 | 4 | 56 | 186 | 184 | 328 | 3.47e-22 | 96.3 |
| Msa0626690 | MtrunA17_Chr2g0333641 | 43.030 | 165 | 79 | 3 | 223 | 375 | 148 | 309 | 2.21e-29 | 115 |
| Msa0626690 | MtrunA17_Chr2g0333641 | 40.845 | 142 | 69 | 3 | 57 | 186 | 148 | 286 | 1.95e-18 | 85.1 |
| Msa0626690 | MtrunA17_Chr8g0336681 | 42.683 | 164 | 76 | 3 | 224 | 369 | 168 | 331 | 2.80e-28 | 113 |
| Msa0626690 | MtrunA17_Chr8g0336681 | 38.411 | 151 | 67 | 4 | 58 | 186 | 168 | 314 | 2.52e-19 | 88.2 |
| Msa0626690 | MtrunA17_Chr2g0333611 | 45.223 | 157 | 77 | 5 | 222 | 369 | 55 | 211 | 2.12e-27 | 107 |
| Msa0626690 | MtrunA17_Chr2g0333611 | 43.357 | 143 | 66 | 6 | 56 | 186 | 55 | 194 | 2.21e-21 | 91.7 |
| Msa0626690 | MtrunA17_Chr5g0400661 | 40.230 | 174 | 80 | 3 | 223 | 372 | 160 | 333 | 6.01e-27 | 109 |
| Msa0626690 | MtrunA17_Chr5g0400661 | 41.304 | 138 | 58 | 3 | 71 | 185 | 175 | 312 | 2.69e-20 | 90.9 |
| Msa0626690 | MtrunA17_Chr4g0054581 | 42.236 | 161 | 61 | 4 | 234 | 371 | 221 | 372 | 1.86e-26 | 108 |
| Msa0626690 | MtrunA17_Chr4g0054581 | 36.691 | 139 | 56 | 5 | 70 | 185 | 223 | 352 | 1.46e-14 | 74.3 |
| Msa0626690 | MtrunA17_Chr4g0054621 | 40.288 | 139 | 78 | 3 | 237 | 371 | 198 | 335 | 1.44e-24 | 102 |
| Msa0626690 | MtrunA17_Chr4g0054621 | 34.454 | 119 | 73 | 2 | 71 | 185 | 198 | 315 | 1.69e-12 | 67.8 |
| Msa0626690 | MtrunA17_Chr2g0280161 | 37.195 | 164 | 91 | 3 | 223 | 374 | 188 | 351 | 7.07e-24 | 101 |
| Msa0626690 | MtrunA17_Chr2g0280161 | 38.583 | 127 | 67 | 2 | 71 | 186 | 203 | 329 | 1.77e-18 | 85.9 |
| Msa0626690 | MtrunA17_Chr4g0033391 | 39.216 | 153 | 72 | 2 | 234 | 372 | 170 | 315 | 7.70e-24 | 100 |
| Msa0626690 | MtrunA17_Chr4g0033391 | 34.899 | 149 | 75 | 3 | 53 | 186 | 154 | 295 | 6.49e-16 | 77.8 |
| Msa0626690 | MtrunA17_Chr4g0054561 | 39.623 | 159 | 87 | 6 | 223 | 372 | 166 | 324 | 7.43e-23 | 97.8 |
| Msa0626690 | MtrunA17_Chr4g0054561 | 38.400 | 125 | 69 | 4 | 70 | 186 | 180 | 304 | 4.99e-14 | 72.4 |
| Msa0626690 | MtrunA17_Chr4g0033291 | 37.838 | 148 | 81 | 2 | 234 | 372 | 178 | 323 | 1.07e-22 | 97.4 |
| Msa0626690 | MtrunA17_Chr4g0033291 | 32.639 | 144 | 85 | 3 | 53 | 186 | 162 | 303 | 4.24e-15 | 75.5 |
| Msa0626690 | MtrunA17_Chr2g0307131 | 38.961 | 154 | 68 | 3 | 234 | 369 | 202 | 347 | 1.08e-21 | 95.1 |
| Msa0626690 | MtrunA17_Chr2g0307131 | 36.567 | 134 | 61 | 3 | 70 | 186 | 204 | 330 | 2.30e-14 | 73.6 |
| Msa0626690 | MtrunA17_Chr2g0333541 | 37.952 | 166 | 88 | 5 | 224 | 375 | 106 | 270 | 1.32e-21 | 93.6 |
| Msa0626690 | MtrunA17_Chr2g0333541 | 33.775 | 151 | 85 | 4 | 50 | 186 | 98 | 247 | 1.36e-13 | 70.5 |
| Msa0626690 | MtrunA17_Chr2g0307141 | 37.662 | 154 | 70 | 3 | 234 | 369 | 206 | 351 | 2.77e-21 | 94.0 |
| Msa0626690 | MtrunA17_Chr2g0307141 | 34.328 | 134 | 64 | 3 | 70 | 186 | 208 | 334 | 4.01e-13 | 70.1 |
| Msa0626690 | MtrunA17_Chr4g0049331 | 35.758 | 165 | 91 | 4 | 223 | 374 | 146 | 308 | 3.45e-21 | 92.8 |
| Msa0626690 | MtrunA17_Chr4g0049331 | 35.433 | 127 | 72 | 2 | 70 | 186 | 160 | 286 | 3.31e-16 | 78.6 |
| Msa0626690 | MtrunA17_Chr5g0400641 | 38.060 | 134 | 73 | 2 | 236 | 359 | 23 | 156 | 4.89e-21 | 89.0 |
| Msa0626690 | MtrunA17_Chr5g0400641 | 38.583 | 127 | 68 | 2 | 70 | 186 | 23 | 149 | 3.30e-19 | 84.0 |
| Msa0626690 | MtrunA17_Chr4g0054551 | 38.365 | 159 | 89 | 6 | 223 | 372 | 166 | 324 | 2.52e-20 | 90.9 |
| Msa0626690 | MtrunA17_Chr4g0054551 | 38.400 | 125 | 69 | 4 | 70 | 186 | 180 | 304 | 1.14e-12 | 68.2 |
| Msa0626690 | MtrunA17_Chr7g0249811 | 37.580 | 157 | 82 | 3 | 222 | 369 | 175 | 324 | 2.54e-20 | 90.9 |
| Msa0626690 | MtrunA17_Chr4g0033281 | 37.241 | 145 | 85 | 1 | 234 | 372 | 176 | 320 | 5.75e-20 | 89.7 |
| Msa0626690 | MtrunA17_Chr4g0033281 | 34.043 | 141 | 86 | 2 | 53 | 186 | 160 | 300 | 1.06e-13 | 71.2 |
| Msa0626690 | MtrunA17_Chr6g0468491 | 36.667 | 150 | 79 | 3 | 234 | 370 | 160 | 306 | 7.65e-20 | 89.0 |
| Msa0626690 | MtrunA17_Chr6g0468491 | 36.691 | 139 | 62 | 5 | 70 | 191 | 162 | 291 | 4.04e-13 | 69.7 |
| Msa0626690 | MtrunA17_Chr5g0400671 | 32.298 | 161 | 101 | 2 | 223 | 375 | 165 | 325 | 5.22e-19 | 87.0 |
| Msa0626690 | MtrunA17_Chr5g0400671 | 39.200 | 125 | 67 | 3 | 70 | 186 | 179 | 302 | 1.59e-17 | 82.8 |
| Msa0626690 | MtrunA17_Chr4g0054571 | 37.952 | 166 | 85 | 5 | 223 | 370 | 161 | 326 | 4.20e-16 | 78.6 |
| Msa0626690 | MtrunA17_Chr4g0054571 | 35.811 | 148 | 77 | 5 | 57 | 186 | 161 | 308 | 6.54e-12 | 66.2 |
| Msa0626690 | MtrunA17_Chr7g0225901 | 36.090 | 133 | 61 | 4 | 71 | 186 | 114 | 239 | 1.16e-15 | 76.3 |
| Msa0626690 | MtrunA17_Chr7g0225901 | 35.036 | 137 | 65 | 4 | 234 | 353 | 111 | 240 | 2.82e-14 | 72.0 |
| Msa0626690 | MtrunA17_Chr6g0468461 | 29.825 | 171 | 84 | 4 | 45 | 186 | 147 | 310 | 1.85e-12 | 67.8 |
| Msa0626690 | MtrunA17_Chr6g0468461 | 32.867 | 143 | 83 | 3 | 234 | 373 | 196 | 328 | 1.66e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626690 | AT4G37850.2 | 40.244 | 164 | 84 | 5 | 223 | 373 | 163 | 325 | 8.94e-24 | 100 |
| Msa0626690 | AT4G37850.2 | 40.972 | 144 | 71 | 5 | 57 | 187 | 163 | 305 | 1.41e-21 | 94.7 |
| Msa0626690 | AT4G37850.1 | 40.244 | 164 | 84 | 5 | 223 | 373 | 163 | 325 | 8.94e-24 | 100 |
| Msa0626690 | AT4G37850.1 | 40.972 | 144 | 71 | 5 | 57 | 187 | 163 | 305 | 1.41e-21 | 94.7 |
| Msa0626690 | AT2G22770.1 | 35.556 | 180 | 86 | 4 | 222 | 373 | 142 | 319 | 3.74e-21 | 93.2 |
| Msa0626690 | AT2G22770.1 | 35.032 | 157 | 76 | 3 | 56 | 186 | 142 | 298 | 1.03e-15 | 77.8 |
| Msa0626690 | AT2G22760.1 | 36.364 | 165 | 90 | 6 | 223 | 372 | 130 | 294 | 5.31e-21 | 92.4 |
| Msa0626690 | AT2G22760.1 | 38.462 | 130 | 67 | 3 | 70 | 186 | 144 | 273 | 5.12e-19 | 87.0 |
| Msa0626690 | AT2G22760.2 | 37.681 | 138 | 73 | 3 | 70 | 194 | 144 | 281 | 3.67e-20 | 89.7 |
| Msa0626690 | AT2G22760.2 | 37.241 | 145 | 77 | 5 | 223 | 353 | 130 | 274 | 3.49e-17 | 81.3 |
| Msa0626690 | AT2G22750.2 | 34.731 | 167 | 92 | 4 | 223 | 373 | 137 | 302 | 1.55e-15 | 77.0 |
| Msa0626690 | AT2G22750.2 | 36.054 | 147 | 77 | 4 | 57 | 187 | 137 | 282 | 1.16e-12 | 68.6 |
| Msa0626690 | AT2G22750.3 | 34.731 | 167 | 92 | 4 | 223 | 373 | 165 | 330 | 1.81e-15 | 77.0 |
| Msa0626690 | AT2G22750.3 | 36.054 | 147 | 77 | 4 | 57 | 187 | 165 | 310 | 1.45e-12 | 68.6 |
| Msa0626690 | AT2G22750.5 | 34.731 | 167 | 92 | 4 | 223 | 373 | 161 | 326 | 1.92e-15 | 77.0 |
| Msa0626690 | AT2G22750.5 | 36.054 | 147 | 77 | 4 | 57 | 187 | 161 | 306 | 1.54e-12 | 68.2 |
| Msa0626690 | AT2G22750.1 | 34.731 | 167 | 91 | 5 | 223 | 373 | 137 | 301 | 3.04e-14 | 73.2 |
| Msa0626690 | AT2G22750.1 | 36.301 | 146 | 76 | 4 | 57 | 186 | 137 | 281 | 1.31e-12 | 68.2 |
| Msa0626690 | AT2G22750.4 | 34.731 | 167 | 91 | 5 | 223 | 373 | 165 | 329 | 3.51e-14 | 73.2 |
| Msa0626690 | AT2G22750.4 | 36.301 | 146 | 76 | 4 | 57 | 186 | 165 | 309 | 1.76e-12 | 68.2 |
Find 72 sgRNAs with CRISPR-Local
Find 492 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGTAGTGTCTTGCAATT+TGG | 0.242766 | 4_3:-6635696 | Msa0626690:CDS |
| AATAGTAGTGTCTTGCAATT+TGG | 0.242766 | 4_3:-6642654 | Msa0626690:CDS |
| ATTACCTTACATAATATTCT+TGG | 0.253091 | 4_3:-6645684 | Msa0626690:five_prime_UTR |
| TTGGCCTTCTAATTCTGATT+TGG | 0.292992 | 4_3:-6645598 | Msa0626690:intron |
| CTATTATATAACGTTAGTTT+TGG | 0.314460 | 4_3:+6645660 | None:intergenic |
| GAGAAGGGTGGTTGAGGTTG+TGG | 0.332790 | 4_3:+6645778 | None:intergenic |
| GTCCATTGTGAGAAACAAAA+TGG | 0.346102 | 4_3:-6635771 | Msa0626690:CDS |
| TTTACCAAATCAGAATTAGA+AGG | 0.359501 | 4_3:+6645594 | None:intergenic |
| GACACTCTTGCTTTGACCTC+TGG | 0.373738 | 4_3:+6635816 | None:intergenic |
| AAGGAACTTTCAGATGTCAT+AGG | 0.393216 | 4_3:-6637256 | Msa0626690:CDS |
| TGGAGGAGTCGGGAGAAAAT+TGG | 0.405975 | 4_3:-6645617 | Msa0626690:CDS |
| CACAAAATTAATGGAGGAGT+CGG | 0.417820 | 4_3:-6645628 | Msa0626690:exon |
| ACGAACCTTCTTTAAGCCTA+TGG | 0.424699 | 4_3:+6645302 | None:intergenic |
| GAGTAATATAATGAGTACTA+TGG | 0.431589 | 4_3:+6645805 | None:intergenic |
| GTCCAATGTGAGGAACAAAA+TGG | 0.442895 | 4_3:-6642729 | Msa0626690:CDS |
| TGTGATGATGAGGATCAAAT+TGG | 0.444244 | 4_3:-6637334 | Msa0626690:CDS |
| TGGTCCAAGAATATTATGTA+AGG | 0.448009 | 4_3:+6645680 | None:intergenic |
| AAACAAGAGAAGGGTGGTTG+AGG | 0.454672 | 4_3:+6645772 | None:intergenic |
| GACACTCTTGCTTTAACCTC+TGG | 0.454730 | 4_3:+6642774 | None:intergenic |
| GATGGACGACACTTCGATCC+TGG | 0.456139 | 4_3:-6635979 | Msa0626690:CDS |
| CATAGTCTTTAGCTTTCTCC+AGG | 0.461758 | 4_3:+6635961 | None:intergenic |
| ATTATGTACCTTAGCAATGA+TGG | 0.465279 | 4_3:+6635653 | None:intergenic |
| AGATTCTCCATCTTTAAGAA+TGG | 0.468345 | 4_3:+6645446 | None:intergenic |
| CCAACATTTGTACTAACAAA+AGG | 0.472387 | 4_3:-6642848 | Msa0626690:CDS |
| CAAACATTTGTAGCAACAAA+AGG | 0.474862 | 4_3:-6635890 | Msa0626690:CDS |
| GAAAAGAAGAAAACAAGAGA+AGG | 0.477030 | 4_3:+6645762 | None:intergenic |
| GCATCCCTTTGTATCATCTG+TGG | 0.493551 | 4_3:+6637306 | None:intergenic |
| GTACTCATCTGAATTCACTT+TGG | 0.493682 | 4_3:+6635866 | None:intergenic |
| CATCCCTTTGTATCATCTGT+GGG | 0.500625 | 4_3:+6637307 | None:intergenic |
| TGAGGAACAAAATGGTATCC+TGG | 0.505887 | 4_3:-6642721 | Msa0626690:CDS |
| GATGAAGCCATTCTTAAAGA+TGG | 0.508496 | 4_3:-6645453 | Msa0626690:CDS |
| ACAAAATTAATGGAGGAGTC+GGG | 0.511241 | 4_3:-6645627 | Msa0626690:exon |
| GTAGTAATTTGAACTCACTT+TGG | 0.517586 | 4_3:+6642824 | None:intergenic |
| AGACGCCATAGGCTTAAAGA+AGG | 0.520059 | 4_3:-6645307 | Msa0626690:intron |
| AGATGTCATAGGCTTAAAGA+AGG | 0.521799 | 4_3:-6637245 | Msa0626690:intron |
| GGAGATCACAGAGATGTTGA+AGG | 0.529175 | 4_3:-6645337 | Msa0626690:CDS |
| AGAGAGCTAGAACAAGTAGC+TGG | 0.532657 | 4_3:-6635915 | Msa0626690:CDS |
| AAAAGAAGAAAACAAGAGAA+GGG | 0.535404 | 4_3:+6645763 | None:intergenic |
| GGAGATAACAGAGAGATTGA+AGG | 0.538887 | 4_3:-6637275 | Msa0626690:CDS |
| AGAGAGCTAGAACAAGAAGC+TGG | 0.540149 | 4_3:-6642873 | Msa0626690:CDS |
| AGTTCAAATTACTACAATTG+TGG | 0.544671 | 4_3:-6642816 | Msa0626690:CDS |
| AAGGAACTTTCAGACGCCAT+AGG | 0.546154 | 4_3:-6645318 | Msa0626690:CDS |
| TATACAATGCAGATGGGTGA+TGG | 0.560778 | 4_3:-6635128 | Msa0626690:intron |
| GAAAGTATAGTGTGGATAAG+TGG | 0.563513 | 4_3:+6645720 | None:intergenic |
| GGAGAAAGCTAAAGACTATG+TGG | 0.566262 | 4_3:-6635958 | Msa0626690:CDS |
| TACAAAGGAAAATAATGAGA+AGG | 0.566751 | 4_3:-6645358 | Msa0626690:CDS |
| AAGGGTGGTTGAGGTTGTGG+AGG | 0.572193 | 4_3:+6645781 | None:intergenic |
| AATTCAGATGAGTACAATTG+TGG | 0.580271 | 4_3:-6635858 | Msa0626690:CDS |
| ATTAGTGAAAACTCTGAGAA+TGG | 0.589791 | 4_3:-6635084 | Msa0626690:CDS |
| AAGATGAAGATTTGCAAGGT+GGG | 0.590601 | 4_3:+6635728 | None:intergenic |
| GATCCCACAGATGATACAAA+GGG | 0.591275 | 4_3:-6637310 | Msa0626690:CDS |
| TGACTCTGTGTGTGATGATG+AGG | 0.596800 | 4_3:-6637344 | Msa0626690:CDS |
| TGACATCACCATCATTGCTA+AGG | 0.597498 | 4_3:-6635661 | Msa0626690:intron |
| TGACATCACCATCGTTGCCA+AGG | 0.604175 | 4_3:-6642619 | Msa0626690:intron |
| TACAAAGGGATGCAATGAGA+AGG | 0.614231 | 4_3:-6637296 | Msa0626690:CDS |
| TGGCAACGATGGTGATGTCA+AGG | 0.614449 | 4_3:+6642622 | None:intergenic |
| CTGAAAGATGAAGATTTGCA+AGG | 0.619476 | 4_3:+6635724 | None:intergenic |
| AGAAGAAAACAAGAGAAGGG+TGG | 0.625567 | 4_3:+6645766 | None:intergenic |
| AGATCCCACAGATGATACAA+AGG | 0.632403 | 4_3:-6637311 | Msa0626690:CDS |
| TATTATGTAAGGTAATTGTG+TGG | 0.636240 | 4_3:+6645691 | None:intergenic |
| ATCTGTATGTGATGATGATG+AGG | 0.647394 | 4_3:-6645421 | Msa0626690:CDS |
| AAAGATGAAGATTTGCAAGG+TGG | 0.649158 | 4_3:+6635727 | None:intergenic |
| GGAAGAATGAAAGTATAGTG+TGG | 0.650077 | 4_3:+6645712 | None:intergenic |
| TAGCAATGATGGTGATGTCA+AGG | 0.650596 | 4_3:+6635664 | None:intergenic |
| AAGTGATATTACTCTTCCAG+AGG | 0.654563 | 4_3:-6642790 | Msa0626690:CDS |
| AATGATGGTGATGTCAAGGA+TGG | 0.654787 | 4_3:+6635668 | None:intergenic |
| GGCAACGATGGTGATGTCAA+GGG | 0.669209 | 4_3:+6642623 | None:intergenic |
| TATATGTACCTTGGCAACGA+TGG | 0.684253 | 4_3:+6642611 | None:intergenic |
| AAGTGATAATACTCTTCCAG+AGG | 0.687795 | 4_3:-6635832 | Msa0626690:CDS |
| AGATCCCACAGATAATACAA+AGG | 0.692675 | 4_3:-6645373 | Msa0626690:CDS |
| TCTTGTCATAGTCCAATGTG+AGG | 0.694778 | 4_3:-6642739 | Msa0626690:CDS |
| AACGATGGTGATGTCAAGGG+TGG | 0.703274 | 4_3:+6642626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATAATAATATAATA+TGG | - | chr4_3:6641322-6641341 | Msa0626690:intron | 0.0% |
| !! | ATCATATGTATTATATTAAT+AGG | + | chr4_3:6635140-6635159 | None:intergenic | 10.0% |
| !!! | ATGTTTACTATATTTAATTT+AGG | + | chr4_3:6635441-6635460 | None:intergenic | 10.0% |
| !! | CATATTTATATTTAAATGAA+CGG | - | chr4_3:6635458-6635477 | Msa0626690:intron | 10.0% |
| !!! | TAATTTTTTTAGTATAAAGA+AGG | + | chr4_3:6635590-6635609 | None:intergenic | 10.0% |
| !!! | TTATTATTTTTTTTAAAACC+AGG | - | chr4_3:6636403-6636422 | Msa0626690:intron | 10.0% |
| !!! | TATTAAGATTATGTTTTTTA+TGG | - | chr4_3:6636465-6636484 | Msa0626690:intron | 10.0% |
| !!! | ATTAAGATTATGTTTTTTAT+GGG | - | chr4_3:6636466-6636485 | Msa0626690:intron | 10.0% |
| !!! | TAATTTTGTAACAAAAAATT+CGG | - | chr4_3:6636522-6636541 | Msa0626690:intron | 10.0% |
| !! | TTTCATTAATTTATAATTTG+TGG | - | chr4_3:6637093-6637112 | Msa0626690:intron | 10.0% |
| !!! | TTCATTAATTTATAATTTGT+GGG | - | chr4_3:6637094-6637113 | Msa0626690:intron | 10.0% |
| !! | ATTATAATGTAAATCTAAAA+TGG | - | chr4_3:6638455-6638474 | Msa0626690:intron | 10.0% |
| !! | TAATTAATATTTATGAACAA+AGG | + | chr4_3:6638785-6638804 | None:intergenic | 10.0% |
| !!! | TGTAAAAAACATTATTTTAA+TGG | + | chr4_3:6639637-6639656 | None:intergenic | 10.0% |
| !! | TACATAATAAAATTTATTCA+TGG | - | chr4_3:6640561-6640580 | Msa0626690:intron | 10.0% |
| !! | TATAAAAATAATTAGTATCA+TGG | - | chr4_3:6640776-6640795 | Msa0626690:intron | 10.0% |
| !! | GAATAATATTAATGATATAA+CGG | - | chr4_3:6641660-6641679 | Msa0626690:intron | 10.0% |
| !! | ACATATTACAAATTAAATTT+AGG | - | chr4_3:6643497-6643516 | Msa0626690:intron | 10.0% |
| !! | AAAATTAAAGAGAAAATAAA+TGG | + | chr4_3:6643944-6643963 | None:intergenic | 10.0% |
| !! | TATATATGTATGTATTTATA+TGG | - | chr4_3:6644557-6644576 | Msa0626690:intron | 10.0% |
| !!! | TAAATTCTAAATATGAATTT+TGG | + | chr4_3:6645069-6645088 | None:intergenic | 10.0% |
| !! | ATTAAATAGTAAAAATTCAA+GGG | + | chr4_3:6645471-6645490 | None:intergenic | 10.0% |
| !! | AATTAAATAGTAAAAATTCA+AGG | + | chr4_3:6645472-6645491 | None:intergenic | 10.0% |
| !!! | CATAATTTTCACAAAATTAA+TGG | - | chr4_3:6635052-6635071 | Msa0626690:exon | 15.0% |
| !! | CTTAACGAAATTAATAAATA+AGG | + | chr4_3:6635968-6635987 | None:intergenic | 15.0% |
| !!! | TATTTAAATTTGTTACAAAC+AGG | - | chr4_3:6636316-6636335 | Msa0626690:intron | 15.0% |
| !!! | ATTTAAATTTGTTACAAACA+GGG | - | chr4_3:6636317-6636336 | Msa0626690:intron | 15.0% |
| !! | AACAAAACCTAAAAAAATTA+GGG | + | chr4_3:6636676-6636695 | None:intergenic | 15.0% |
| !! | TAACAAAACCTAAAAAAATT+AGG | + | chr4_3:6636677-6636696 | None:intergenic | 15.0% |
| !!! | TCATTAATTTATAATTTGTG+GGG | - | chr4_3:6637095-6637114 | Msa0626690:intron | 15.0% |
| !! | ATGACATTAAAATTATAAGT+TGG | - | chr4_3:6637227-6637246 | Msa0626690:intron | 15.0% |
| !! | TGACATTAAAATTATAAGTT+GGG | - | chr4_3:6637228-6637247 | Msa0626690:intron | 15.0% |
| !!! | TTCTTTTATTATCTATGTAA+TGG | - | chr4_3:6637404-6637423 | Msa0626690:intron | 15.0% |
| !!! | TCCAATTAATTTTTTGAAAA+GGG | + | chr4_3:6637538-6637557 | None:intergenic | 15.0% |
| !!! | ATCCAATTAATTTTTTGAAA+AGG | + | chr4_3:6637539-6637558 | None:intergenic | 15.0% |
| !! | ATTAATATGTCAATGTAATT+TGG | - | chr4_3:6638517-6638536 | Msa0626690:intron | 15.0% |
| !!! | ATGGAATAAGATTTTTATAA+TGG | + | chr4_3:6638614-6638633 | None:intergenic | 15.0% |
| !! | AACAAAAAATCAATCTAAAA+TGG | + | chr4_3:6638633-6638652 | None:intergenic | 15.0% |
| !! | TAATTATAGATCTAAGAATT+AGG | - | chr4_3:6639249-6639268 | Msa0626690:intron | 15.0% |
| !!! | ATTCTAAACATATTTTCATT+CGG | - | chr4_3:6639427-6639446 | Msa0626690:intron | 15.0% |
| !! | TTATTATGTAAAAAGGAAAA+AGG | + | chr4_3:6640551-6640570 | None:intergenic | 15.0% |
| !!! | TTTTTCATAACAAATGAATT+GGG | + | chr4_3:6640677-6640696 | None:intergenic | 15.0% |
| !!! | TTTTTTCATAACAAATGAAT+TGG | + | chr4_3:6640678-6640697 | None:intergenic | 15.0% |
| !!! | TTTTATATTTAGTTGGAATT+GGG | + | chr4_3:6640763-6640782 | None:intergenic | 15.0% |
| !!! | TTTTTATATTTAGTTGGAAT+TGG | + | chr4_3:6640764-6640783 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGTGAATAATAAT+AGG | + | chr4_3:6641098-6641117 | None:intergenic | 15.0% |
| !!! | ACAAAAATCTCTATTTTTTT+TGG | - | chr4_3:6641111-6641130 | Msa0626690:intron | 15.0% |
| !!! | TAAATATTAGGCTTTTTTAA+GGG | + | chr4_3:6641249-6641268 | None:intergenic | 15.0% |
| !!! | ATAAATATTAGGCTTTTTTA+AGG | + | chr4_3:6641250-6641269 | None:intergenic | 15.0% |
| !! | TAAAACTATGAATTATTGAA+CGG | - | chr4_3:6641605-6641624 | Msa0626690:intron | 15.0% |
| !! | TTGGTAAATATATTTAGTTA+TGG | - | chr4_3:6641919-6641938 | Msa0626690:intron | 15.0% |
| !! | TAAAATAATTCTACCTTAAT+TGG | + | chr4_3:6642072-6642091 | None:intergenic | 15.0% |
| !!! | ACTTTTTCTTTGTAAATTTA+TGG | + | chr4_3:6642559-6642578 | None:intergenic | 15.0% |
| !! | TAAATTTACAAAGAAAAAGT+AGG | - | chr4_3:6642559-6642578 | Msa0626690:intron | 15.0% |
| !!! | CATAATTTTCACAAAATTAA+TGG | - | chr4_3:6635052-6635071 | Msa0626690:exon | 15.0% |
| !! | TAGCATATGTATTAAATAAT+AGG | + | chr4_3:6643208-6643227 | None:intergenic | 15.0% |
| !! | AGTATATAATACTAAATGAA+TGG | - | chr4_3:6643520-6643539 | Msa0626690:intron | 15.0% |
| !! | TCAACAAAAAATAATGTATT+TGG | - | chr4_3:6643783-6643802 | Msa0626690:intron | 15.0% |
| !!! | TTCTAAAATGTAAGTAAAAA+TGG | + | chr4_3:6643846-6643865 | None:intergenic | 15.0% |
| !! | TACTTAATTAAGTTTACTTA+TGG | - | chr4_3:6643875-6643894 | Msa0626690:intron | 15.0% |
| !!! | ATTTTTCGAAAATTCAATAA+TGG | - | chr4_3:6644156-6644175 | Msa0626690:intron | 15.0% |
| !! | TTTGTAAAAAATAAAGAAGT+AGG | - | chr4_3:6644262-6644281 | Msa0626690:intron | 15.0% |
| !! | TTGTAAAAAATAAAGAAGTA+GGG | - | chr4_3:6644263-6644282 | Msa0626690:intron | 15.0% |
| !!! | ATATCTAACATTTTTTCTAA+CGG | + | chr4_3:6645234-6645253 | None:intergenic | 15.0% |
| !! | TTAGAAAAAATGTTAGATAT+AGG | - | chr4_3:6645234-6645253 | Msa0626690:intron | 15.0% |
| !! | TAGAAAAAATGTTAGATATA+GGG | - | chr4_3:6645235-6645254 | Msa0626690:intron | 15.0% |
| !!! | TTACTAAAATATCTGAATTT+TGG | - | chr4_3:6645275-6645294 | Msa0626690:intron | 15.0% |
| !! | ATTACCTTACATAATATTCT+TGG | - | chr4_3:6635005-6635024 | Msa0626690:intron | 20.0% |
| !!! | CTATTATATAACGTTAGTTT+TGG | + | chr4_3:6635032-6635051 | None:intergenic | 20.0% |
| !!! | AATTTTCACAAAATTAATGG+AGG | - | chr4_3:6635055-6635074 | Msa0626690:exon | 20.0% |
| !!! | TGTTTTTTGCATTTATTCAT+AGG | - | chr4_3:6635205-6635224 | Msa0626690:intron | 20.0% |
| !!! | TTAAATTTAACTTAAGAGTG+TGG | - | chr4_3:6635885-6635904 | Msa0626690:CDS | 20.0% |
| !!! | AAATTTAGAGCCAAAATTTT+AGG | + | chr4_3:6636056-6636075 | None:intergenic | 20.0% |
| !! | TAACTTTCAAAAATAGTGTT+TGG | + | chr4_3:6636194-6636213 | None:intergenic | 20.0% |
| !!! | TTAGATTTTTTTTTAGATCC+TGG | + | chr4_3:6636424-6636443 | None:intergenic | 20.0% |
| !!! | AATTAACTAGTTTTTTTACC+CGG | + | chr4_3:6636604-6636623 | None:intergenic | 20.0% |
| !!! | AAAAAATTAGGGTTAGTATT+AGG | + | chr4_3:6636665-6636684 | None:intergenic | 20.0% |
| !!! | ATACTAACCCTAATTTTTTT+AGG | - | chr4_3:6636666-6636685 | Msa0626690:intron | 20.0% |
| !!! | TTGCTTGTTAAAATATTTGA+GGG | + | chr4_3:6636719-6636738 | None:intergenic | 20.0% |
| !! | TACCATCAATCTAATTTATT+CGG | - | chr4_3:6636858-6636877 | Msa0626690:intron | 20.0% |
| !!! | ATAATTATGTTAGTCGTTTT+GGG | - | chr4_3:6636883-6636902 | Msa0626690:intron | 20.0% |
| !!! | TTTTTTAACGAAAGAGATTT+TGG | + | chr4_3:6637129-6637148 | None:intergenic | 20.0% |
| !! | TCTCTTTCGTTAAAAAATTA+TGG | - | chr4_3:6637132-6637151 | Msa0626690:intron | 20.0% |
| !! | AAAGAATTAAGAACATACAA+TGG | + | chr4_3:6637390-6637409 | None:intergenic | 20.0% |
| !!! | TCCCTTTTCAAAAAATTAAT+TGG | - | chr4_3:6637534-6637553 | Msa0626690:intron | 20.0% |
| !!! | TGACAATGATTTTTTTTCAT+TGG | + | chr4_3:6637626-6637645 | None:intergenic | 20.0% |
| !! | AATGAAAAAAAATCATTGTC+AGG | - | chr4_3:6637625-6637644 | Msa0626690:intron | 20.0% |
| !! | ATGAAAAAAAATCATTGTCA+GGG | - | chr4_3:6637626-6637645 | Msa0626690:intron | 20.0% |
| !!! | TATATTAATTTGTCAACGTA+AGG | - | chr4_3:6638423-6638442 | Msa0626690:intron | 20.0% |
| !! | CACAAAAAATCAATCTAAAA+TGG | - | chr4_3:6638560-6638579 | Msa0626690:intron | 20.0% |
| !!! | TAATTAATTTCTTATTGGCT+AGG | - | chr4_3:6638799-6638818 | Msa0626690:intron | 20.0% |
| !!! | AATTAATTTCTTATTGGCTA+GGG | - | chr4_3:6638800-6638819 | Msa0626690:intron | 20.0% |
| !! | AAATACATGATAAAATGTCA+AGG | + | chr4_3:6638857-6638876 | None:intergenic | 20.0% |
| !! | AAAAAATTAAATTCTGCAGA+TGG | - | chr4_3:6638923-6638942 | Msa0626690:intron | 20.0% |
| !!! | CATTTTGCAATTATATTTCT+TGG | - | chr4_3:6639362-6639381 | Msa0626690:intron | 20.0% |
| !!! | AAATATGTTTAGAATTCAGT+AGG | + | chr4_3:6639422-6639441 | None:intergenic | 20.0% |
| !! | CATTATTAACATGAAATAAG+TGG | - | chr4_3:6639525-6639544 | Msa0626690:intron | 20.0% |
| !!! | TTTTAGAAGAAGTTCATAAA+AGG | - | chr4_3:6639930-6639949 | Msa0626690:intron | 20.0% |
| !! | TTTAGAAGAAGTTCATAAAA+GGG | - | chr4_3:6639931-6639950 | Msa0626690:intron | 20.0% |
| !! | AACATGTTAAATGAATCAAT+TGG | - | chr4_3:6640090-6640109 | Msa0626690:intron | 20.0% |
| !!! | GAAAAAGTATATTAAGCTAT+GGG | + | chr4_3:6640504-6640523 | None:intergenic | 20.0% |
| !!! | AGAAAAAGTATATTAAGCTA+TGG | + | chr4_3:6640505-6640524 | None:intergenic | 20.0% |
| !!! | ACTAAACATCAAGATTTTTT+TGG | + | chr4_3:6641166-6641185 | None:intergenic | 20.0% |
| !!! | AAATATTAGGCTTTTTTAAG+GGG | + | chr4_3:6641248-6641267 | None:intergenic | 20.0% |
| !! | GAATTTATCCAATTTATTTG+AGG | + | chr4_3:6641392-6641411 | None:intergenic | 20.0% |
| !! | TTAATGAAAATATTCGAAGT+AGG | + | chr4_3:6641450-6641469 | None:intergenic | 20.0% |
| !! | TAATATTAATGATATAACGG+TGG | - | chr4_3:6641663-6641682 | Msa0626690:intron | 20.0% |
| !!! | AACTGTACTTTTTTTTTTGA+CGG | - | chr4_3:6641742-6641761 | Msa0626690:intron | 20.0% |
| !!! | CTCATTAATTATTTTTTGAG+AGG | + | chr4_3:6641860-6641879 | None:intergenic | 20.0% |
| !! | TATAAAAAAACCTAAAACGT+TGG | - | chr4_3:6641900-6641919 | Msa0626690:intron | 20.0% |
| !!! | AATATATTTACCAACGTTTT+AGG | + | chr4_3:6641913-6641932 | None:intergenic | 20.0% |
| !! | AATAATAAGAGCAGATAAAT+AGG | + | chr4_3:6641986-6642005 | None:intergenic | 20.0% |
| !! | ACATATTAAGAAACCAATTA+AGG | - | chr4_3:6642056-6642075 | Msa0626690:intron | 20.0% |
| !!! | TTTTTTTATATACTCTCATG+AGG | + | chr4_3:6642111-6642130 | None:intergenic | 20.0% |
| !! | TCAATCTTAACTAATTAAGT+TGG | - | chr4_3:6642342-6642361 | Msa0626690:intron | 20.0% |
| !!! | TTCTATATTCCTTTTTTTAG+GGG | + | chr4_3:6642379-6642398 | None:intergenic | 20.0% |
| !!! | GTTCTATATTCCTTTTTTTA+GGG | + | chr4_3:6642380-6642399 | None:intergenic | 20.0% |
| !!! | TGTTCTATATTCCTTTTTTT+AGG | + | chr4_3:6642381-6642400 | None:intergenic | 20.0% |
| !! | AAACACCTTATAAAAAATTG+AGG | - | chr4_3:6642490-6642509 | Msa0626690:intron | 20.0% |
| !!! | TGTTATTTGAATAACCATTT+GGG | - | chr4_3:6642515-6642534 | Msa0626690:intron | 20.0% |
| !! | TCACAAAAATTGTTACAAAA+TGG | - | chr4_3:6642652-6642671 | Msa0626690:CDS | 20.0% |
| !!! | AGTCTTTCTAAAAAAGTAAT+TGG | - | chr4_3:6642824-6642843 | Msa0626690:CDS | 20.0% |
| !!! | GTCTTTCTAAAAAAGTAATT+GGG | - | chr4_3:6642825-6642844 | Msa0626690:CDS | 20.0% |
| !! | TACCTTACATATATATTTCT+TGG | - | chr4_3:6643074-6643093 | Msa0626690:intron | 20.0% |
| !!! | AATTTTCACAAAATTAATGG+AGG | - | chr4_3:6635055-6635074 | Msa0626690:exon | 20.0% |
| !! | AAATAATAGGTTATTGCAAT+TGG | + | chr4_3:6643195-6643214 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTCATTTATACAT+AGG | - | chr4_3:6643285-6643304 | Msa0626690:intron | 20.0% |
| !! | TGTTTGAGGAAAAATATAAA+AGG | - | chr4_3:6643655-6643674 | Msa0626690:intron | 20.0% |
| !! | TCAACATAAATTGATGTATT+CGG | + | chr4_3:6643822-6643841 | None:intergenic | 20.0% |
| !! | TTAATATGATTGAGAGTAAA+TGG | - | chr4_3:6643984-6644003 | Msa0626690:intron | 20.0% |
| !! | GGAAAAAAAAAAAAAAACTG+AGG | - | chr4_3:6644177-6644196 | Msa0626690:intron | 20.0% |
| !! | TAGACAAATTAAAATGGAAA+TGG | + | chr4_3:6644207-6644226 | None:intergenic | 20.0% |
| !!! | ATTTCCATTTTAATTTGTCT+AGG | - | chr4_3:6644206-6644225 | Msa0626690:intron | 20.0% |
| !!! | GATAGTACATTTTTAAATTG+CGG | + | chr4_3:6645174-6645193 | None:intergenic | 20.0% |
| !! | TAAAAATACATCTACACATT+CGG | + | chr4_3:6645701-6645720 | None:intergenic | 20.0% |
| ! | GAGTAATATAATGAGTACTA+TGG | + | chr4_3:6634887-6634906 | None:intergenic | 25.0% |
| ! | AAAAGAAGAAAACAAGAGAA+GGG | + | chr4_3:6634929-6634948 | None:intergenic | 25.0% |
| ! | TATTATGTAAGGTAATTGTG+TGG | + | chr4_3:6635001-6635020 | None:intergenic | 25.0% |
| ! | TTTACCAAATCAGAATTAGA+AGG | + | chr4_3:6635098-6635117 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTATTATCTGT+GGG | + | chr4_3:6635323-6635342 | None:intergenic | 25.0% |
| !! | ATTTTCCTTTGTATTATCTG+TGG | + | chr4_3:6635324-6635343 | None:intergenic | 25.0% |
| ! | TACAAAGGAAAATAATGAGA+AGG | - | chr4_3:6635331-6635350 | Msa0626690:intron | 25.0% |
| !!! | TTTTTTAGTATAAAGAAGGC+TGG | + | chr4_3:6635586-6635605 | None:intergenic | 25.0% |
| !! | ACAACTCAATCCTAAAATTT+TGG | - | chr4_3:6636043-6636062 | Msa0626690:intron | 25.0% |
| !!! | ATTTTAGAGCCAAGATTTTA+GGG | + | chr4_3:6636103-6636122 | None:intergenic | 25.0% |
| !!! | AATTTTAGAGCCAAGATTTT+AGG | + | chr4_3:6636104-6636123 | None:intergenic | 25.0% |
| !!! | TGGTAGTATGAATTTTTTAG+TGG | + | chr4_3:6636174-6636193 | None:intergenic | 25.0% |
| ! | TTGACATTCAAAAATCATAC+TGG | + | chr4_3:6636221-6636240 | None:intergenic | 25.0% |
| !!! | AAGATTATGTTTTTTATGGG+AGG | - | chr4_3:6636469-6636488 | Msa0626690:intron | 25.0% |
| !!! | AGATTATGTTTTTTATGGGA+GGG | - | chr4_3:6636470-6636489 | Msa0626690:intron | 25.0% |
| ! | CTTAATTATATGTCTAACCT+GGG | - | chr4_3:6636573-6636592 | Msa0626690:intron | 25.0% |
| !! | GTTGCTTGTTAAAATATTTG+AGG | + | chr4_3:6636720-6636739 | None:intergenic | 25.0% |
| !! | AAGCAACAAATTTTACTACT+AGG | - | chr4_3:6636733-6636752 | Msa0626690:intron | 25.0% |
| !! | AACAAATTTTACTACTAGGA+TGG | - | chr4_3:6636737-6636756 | Msa0626690:intron | 25.0% |
| !! | ACAAATTTTACTACTAGGAT+GGG | - | chr4_3:6636738-6636757 | Msa0626690:intron | 25.0% |
| ! | CAAAACGACTAACATAATTA+TGG | + | chr4_3:6636884-6636903 | None:intergenic | 25.0% |
| !! | CATAATTATGTTAGTCGTTT+TGG | - | chr4_3:6636882-6636901 | Msa0626690:intron | 25.0% |
| ! | TTGACGTATGATAATTTACA+AGG | - | chr4_3:6636959-6636978 | Msa0626690:intron | 25.0% |
| ! | TGAAAAAAAATCATTGTCAG+GGG | - | chr4_3:6637627-6637646 | Msa0626690:intron | 25.0% |
| !! | GTTGGTTCATTATATTCTAA+AGG | - | chr4_3:6637652-6637671 | Msa0626690:intron | 25.0% |
| ! | TCTCTATATAAATGTGTAGA+TGG | - | chr4_3:6637734-6637753 | Msa0626690:intron | 25.0% |
| ! | AGTTCAAATTACTACAATTG+TGG | - | chr4_3:6637873-6637892 | Msa0626690:intron | 25.0% |
| ! | CATATATTGTATATGTACCT+TGG | + | chr4_3:6638090-6638109 | None:intergenic | 25.0% |
| ! | TGAAGATCATAATTGATTGA+TGG | + | chr4_3:6638160-6638179 | None:intergenic | 25.0% |
| !! | TGTGTGTAGTTCATTTTATA+AGG | + | chr4_3:6638315-6638334 | None:intergenic | 25.0% |
| ! | TTGGAATGAATGAATATGTT+TGG | - | chr4_3:6639029-6639048 | Msa0626690:intron | 25.0% |
| ! | GGTACTTAAGAGTTAATTAT+AGG | - | chr4_3:6639212-6639231 | Msa0626690:intron | 25.0% |
| ! | TTGCAAAGTTATTGAAAATC+TGG | + | chr4_3:6639493-6639512 | None:intergenic | 25.0% |
| !! | AAGAATGTGTTGGTATTTAA+AGG | - | chr4_3:6639980-6639999 | Msa0626690:intron | 25.0% |
| !! | AGAATGTGTTGGTATTTAAA+GGG | - | chr4_3:6639981-6640000 | Msa0626690:intron | 25.0% |
| !! | GATAACTTTCTTGATAACTT+CGG | + | chr4_3:6640309-6640328 | None:intergenic | 25.0% |
| ! | ATCAAGAAAGTTATCAAAGA+AGG | - | chr4_3:6640314-6640333 | Msa0626690:intron | 25.0% |
| ! | TGAAAATAAATTCATTTGCG+TGG | + | chr4_3:6640425-6640444 | None:intergenic | 25.0% |
| ! | GTAAAAAGGAAAAAGGTTTA+AGG | + | chr4_3:6640544-6640563 | None:intergenic | 25.0% |
| !! | TCAACTAAGAACTTCTTTTA+AGG | - | chr4_3:6640625-6640644 | Msa0626690:intron | 25.0% |
| ! | GAGATATTATCATTACGATT+TGG | + | chr4_3:6640816-6640835 | None:intergenic | 25.0% |
| ! | GTTTGGTAGATATTAAAAGA+AGG | + | chr4_3:6640918-6640937 | None:intergenic | 25.0% |
| !! | AATAAATGTAGCATTGAGTT+TGG | + | chr4_3:6640935-6640954 | None:intergenic | 25.0% |
| ! | TTTATCCAATTTATTTGAGG+TGG | + | chr4_3:6641389-6641408 | None:intergenic | 25.0% |
| ! | ATTGGATAAATTCAGTTAGT+TGG | - | chr4_3:6641399-6641418 | Msa0626690:intron | 25.0% |
| !!! | ATAATTCATAGTTTTACACG+TGG | + | chr4_3:6641601-6641620 | None:intergenic | 25.0% |
| !! | TTTTAAACTGTACTTGTCTT+TGG | - | chr4_3:6641770-6641789 | Msa0626690:intron | 25.0% |
| ! | GATAAGAATGCACTAAAATA+AGG | + | chr4_3:6642200-6642219 | None:intergenic | 25.0% |
| ! | TTCATATCTCATAGATATCT+AGG | + | chr4_3:6642302-6642321 | None:intergenic | 25.0% |
| ! | TATATACAACCCCTAAAAAA+AGG | - | chr4_3:6642367-6642386 | Msa0626690:intron | 25.0% |
| !!! | TCATCACTAGTTTTTATGAA+TGG | - | chr4_3:6642401-6642420 | Msa0626690:intron | 25.0% |
| !!! | CATCACTAGTTTTTATGAAT+GGG | - | chr4_3:6642402-6642421 | Msa0626690:intron | 25.0% |
| ! | AACAATGAATCTTACATCTT+AGG | - | chr4_3:6642431-6642450 | Msa0626690:intron | 25.0% |
| !!! | ACACACCTCAATTTTTTATA+AGG | + | chr4_3:6642498-6642517 | None:intergenic | 25.0% |
| !!! | GTGTTATTTGAATAACCATT+TGG | - | chr4_3:6642514-6642533 | Msa0626690:intron | 25.0% |
| !!! | ACTCACTTATTTTTTTCAAG+AGG | + | chr4_3:6642692-6642711 | None:intergenic | 25.0% |
| ! | CCATAATTTCTAAACATAAG+TGG | + | chr4_3:6642752-6642771 | None:intergenic | 25.0% |
| ! | CCACTTATGTTTAGAAATTA+TGG | - | chr4_3:6642749-6642768 | Msa0626690:CDS | 25.0% |
| ! | ATATATGTAAGGTAATTGTG+TGG | + | chr4_3:6643068-6643087 | None:intergenic | 25.0% |
| ! | TGCCAAGAAATATATATGTA+AGG | + | chr4_3:6643079-6643098 | None:intergenic | 25.0% |
| !!! | TAATGAAGTTTTGTTGTTTG+AGG | - | chr4_3:6643641-6643660 | Msa0626690:intron | 25.0% |
| ! | TGTGATCAAAACCAATATAT+AGG | + | chr4_3:6643908-6643927 | None:intergenic | 25.0% |
| ! | GAGAATTAACTTCAAATTCT+TGG | - | chr4_3:6644037-6644056 | Msa0626690:intron | 25.0% |
| !!! | TTTTTTTTCCATCCGAAAAT+AGG | + | chr4_3:6644118-6644137 | None:intergenic | 25.0% |
| ! | TCATAATTGAATAAGCACAT+GGG | + | chr4_3:6644316-6644335 | None:intergenic | 25.0% |
| ! | TTCATAATTGAATAAGCACA+TGG | + | chr4_3:6644317-6644336 | None:intergenic | 25.0% |
| ! | TTTAAGAGACTTGAAATTGA+AGG | - | chr4_3:6644338-6644357 | Msa0626690:intron | 25.0% |
| !!! | ATTTTAATGTATTGAACGTG+TGG | - | chr4_3:6644500-6644519 | Msa0626690:intron | 25.0% |
| ! | TTTCAATATGAACTTGTAGA+TGG | - | chr4_3:6644692-6644711 | Msa0626690:intron | 25.0% |
| ! | TATGATATATACAATGCAGA+TGG | - | chr4_3:6645554-6645573 | Msa0626690:intron | 25.0% |
| ! | ATGATATATACAATGCAGAT+GGG | - | chr4_3:6645555-6645574 | Msa0626690:intron | 25.0% |
| GAAAAGAAGAAAACAAGAGA+AGG | + | chr4_3:6634930-6634949 | None:intergenic | 30.0% | |
| TGGTCCAAGAATATTATGTA+AGG | + | chr4_3:6635012-6635031 | None:intergenic | 30.0% | |
| ! | AGATTCTCCATCTTTAAGAA+TGG | + | chr4_3:6635246-6635265 | None:intergenic | 30.0% |
| !!! | GGATCATTATTTTGAAGATC+AGG | - | chr4_3:6635289-6635308 | Msa0626690:intron | 30.0% |
| !!! | CATTATTTTGAAGATCAGGT+TGG | - | chr4_3:6635293-6635312 | Msa0626690:intron | 30.0% |
| TTAAGAATTCGAAGTGACTT+AGG | - | chr4_3:6635783-6635802 | Msa0626690:CDS | 30.0% | |
| ! | TTAAGAGTGTGGTTAAACAA+AGG | - | chr4_3:6635896-6635915 | Msa0626690:CDS | 30.0% |
| ATTAGTGGAGGGAAAAAATT+AGG | + | chr4_3:6636006-6636025 | None:intergenic | 30.0% | |
| AGTTGTTGCAAACCTAATAA+GGG | + | chr4_3:6636029-6636048 | None:intergenic | 30.0% | |
| !!! | GATTATGTTTTTTATGGGAG+GGG | - | chr4_3:6636471-6636490 | Msa0626690:intron | 30.0% |
| !!! | ATTATGTTTTTTATGGGAGG+GGG | - | chr4_3:6636472-6636491 | Msa0626690:intron | 30.0% |
| CCAGGTTAGACATATAATTA+AGG | + | chr4_3:6636575-6636594 | None:intergenic | 30.0% | |
| CCTTAATTATATGTCTAACC+TGG | - | chr4_3:6636572-6636591 | Msa0626690:intron | 30.0% | |
| ! | AATTAGGGTTAGTATTAGGA+GGG | + | chr4_3:6636661-6636680 | None:intergenic | 30.0% |
| ! | AAATTAGGGTTAGTATTAGG+AGG | + | chr4_3:6636662-6636681 | None:intergenic | 30.0% |
| CATATTACTATAACAAGCAG+TGG | - | chr4_3:6636913-6636932 | Msa0626690:intron | 30.0% | |
| CTTATACACTACATTTGAAG+TGG | + | chr4_3:6637342-6637361 | None:intergenic | 30.0% | |
| CACTTCAAATGTAGTGTATA+AGG | - | chr4_3:6637340-6637359 | Msa0626690:CDS | 30.0% | |
| ! | CCTTTTGTTAGTACAAATGT+TGG | + | chr4_3:6637844-6637863 | None:intergenic | 30.0% |
| CCAACATTTGTACTAACAAA+AGG | - | chr4_3:6637841-6637860 | Msa0626690:intron | 30.0% | |
| GTAGTAATTTGAACTCACTT+TGG | + | chr4_3:6637868-6637887 | None:intergenic | 30.0% | |
| !! | AAGATGAAGATTTTCAAGGT+TGG | + | chr4_3:6638006-6638025 | None:intergenic | 30.0% |
| ! | CTGAAAGATGAAGATTTTCA+AGG | + | chr4_3:6638010-6638029 | None:intergenic | 30.0% |
| AATAGTAGTGTCTTGCAATT+TGG | - | chr4_3:6638035-6638054 | Msa0626690:intron | 30.0% | |
| TCTAATCAATCTTCAACGTA+AGG | + | chr4_3:6638348-6638367 | None:intergenic | 30.0% | |
| TCTAATCAATCTTCATCGTA+AGG | + | chr4_3:6638388-6638407 | None:intergenic | 30.0% | |
| ATAGATTGTGAAATCTGACT+TGG | - | chr4_3:6639010-6639029 | Msa0626690:intron | 30.0% | |
| TGTTATTGTCTTACTCAGAA+AGG | - | chr4_3:6639084-6639103 | Msa0626690:intron | 30.0% | |
| GTTATTGTCTTACTCAGAAA+GGG | - | chr4_3:6639085-6639104 | Msa0626690:intron | 30.0% | |
| TTATACAATTGCACACAGTA+TGG | + | chr4_3:6639306-6639325 | None:intergenic | 30.0% | |
| AATGAGCTCAAAATGTTGTT+CGG | + | chr4_3:6639465-6639484 | None:intergenic | 30.0% | |
| TCTTGTATGGATAGTATGAA+TGG | + | chr4_3:6639872-6639891 | None:intergenic | 30.0% | |
| !! | CTTCTAAAATGTTCTGCTAT+TGG | + | chr4_3:6639919-6639938 | None:intergenic | 30.0% |
| AGAATTTGTGAAGAATGTGT+TGG | - | chr4_3:6639970-6639989 | Msa0626690:intron | 30.0% | |
| ! | GAATGTGTTGGTATTTAAAG+GGG | - | chr4_3:6639982-6640001 | Msa0626690:intron | 30.0% |
| GACTGACATTACACTATATA+TGG | + | chr4_3:6640016-6640035 | None:intergenic | 30.0% | |
| AAAAGAAGTTCTTAGTTGAC+AGG | + | chr4_3:6640624-6640643 | None:intergenic | 30.0% | |
| !! | TTTTGGATTGATTCATGGAT+TGG | + | chr4_3:6640731-6640750 | None:intergenic | 30.0% |
| AAATCTTGCTTCGGTATAAT+GGG | + | chr4_3:6640885-6640904 | None:intergenic | 30.0% | |
| TAAATCTTGCTTCGGTATAA+TGG | + | chr4_3:6640886-6640905 | None:intergenic | 30.0% | |
| CCTTTAGATAAATCTTGCTT+CGG | + | chr4_3:6640894-6640913 | None:intergenic | 30.0% | |
| ! | AAAGATAAGCACAAGTATTG+TGG | + | chr4_3:6641692-6641711 | None:intergenic | 30.0% |
| !! | AGAAAAAGTAGGTATTGACA+CGG | - | chr4_3:6642570-6642589 | Msa0626690:intron | 30.0% |
| AAATTATGGTTTAGCAGCAA+AGG | - | chr4_3:6642763-6642782 | Msa0626690:CDS | 30.0% | |
| !! | TATTGGTGTTCTAAAGTGAA+GGG | + | chr4_3:6642953-6642972 | None:intergenic | 30.0% |
| !! | ATATTGGTGTTCTAAAGTGA+AGG | + | chr4_3:6642954-6642973 | None:intergenic | 30.0% |
| TGAAAGAGTGATGAAAAGAA+GGG | + | chr4_3:6642990-6643009 | None:intergenic | 30.0% | |
| ATGAAAGAGTGATGAAAAGA+AGG | + | chr4_3:6642991-6643010 | None:intergenic | 30.0% | |
| !!! | GATGAAGTCATTTTTGAAGA+TGG | - | chr4_3:6643316-6643335 | Msa0626690:intron | 30.0% |
| CGGTTATAACAAGTATTCAT+CGG | - | chr4_3:6643736-6643755 | Msa0626690:intron | 30.0% | |
| ATGGAAGTAGTCCTATATAT+TGG | - | chr4_3:6643894-6643913 | Msa0626690:intron | 30.0% | |
| CATGATACTTAAGAGTTTGA+TGG | + | chr4_3:6644094-6644113 | None:intergenic | 30.0% | |
| CATCAAACTCTTAAGTATCA+TGG | - | chr4_3:6644092-6644111 | Msa0626690:intron | 30.0% | |
| ! | TAAGTATCATGGCCTATTTT+CGG | - | chr4_3:6644103-6644122 | Msa0626690:intron | 30.0% |
| CCTTCCTAGACAAATTAAAA+TGG | + | chr4_3:6644213-6644232 | None:intergenic | 30.0% | |
| !!! | CCATTTTAATTTGTCTAGGA+AGG | - | chr4_3:6644210-6644229 | Msa0626690:intron | 30.0% |
| CAAACATTTGTAGCAACAAA+AGG | - | chr4_3:6644799-6644818 | Msa0626690:intron | 30.0% | |
| AATTCAGATGAGTACAATTG+TGG | - | chr4_3:6644831-6644850 | Msa0626690:intron | 30.0% | |
| !! | TACCATTTTGTTTCTCACAA+TGG | + | chr4_3:6644923-6644942 | None:intergenic | 30.0% |
| AATAGTAGTGTCTTGCAATT+TGG | - | chr4_3:6638035-6638054 | Msa0626690:intron | 30.0% | |
| ATTATGTACCTTAGCAATGA+TGG | + | chr4_3:6645039-6645058 | None:intergenic | 30.0% | |
| CATTGCTAAGGTACATAATA+TGG | - | chr4_3:6645040-6645059 | Msa0626690:intron | 30.0% | |
| TTATCGCATAAAATTCAGTG+TGG | - | chr4_3:6645145-6645164 | Msa0626690:intron | 30.0% | |
| TATCGCATAAAATTCAGTGT+GGG | - | chr4_3:6645146-6645165 | Msa0626690:intron | 30.0% | |
| !!! | TAACATTTTTTCTAACGGTC+AGG | + | chr4_3:6645229-6645248 | None:intergenic | 30.0% |
| TAAAAAGAGCAACTTTGCAT+TGG | + | chr4_3:6645409-6645428 | None:intergenic | 30.0% | |
| ! | AATGCAAAGTTGCTCTTTTT+AGG | - | chr4_3:6645408-6645427 | Msa0626690:CDS | 30.0% |
| TCGTGTATTGAATAATGATG+AGG | - | chr4_3:6645507-6645526 | Msa0626690:intron | 30.0% | |
| ! | ATTAGTGAAAACTCTGAGAA+TGG | - | chr4_3:6645605-6645624 | Msa0626690:CDS | 30.0% |
| ! | GAAAGTATAGTGTGGATAAG+TGG | + | chr4_3:6634972-6634991 | None:intergenic | 35.0% |
| ! | GGAAGAATGAAAGTATAGTG+TGG | + | chr4_3:6634980-6634999 | None:intergenic | 35.0% |
| CACAAAATTAATGGAGGAGT+CGG | - | chr4_3:6635061-6635080 | Msa0626690:exon | 35.0% | |
| ACAAAATTAATGGAGGAGTC+GGG | - | chr4_3:6635062-6635081 | Msa0626690:exon | 35.0% | |
| ! | TTGGCCTTCTAATTCTGATT+TGG | - | chr4_3:6635091-6635110 | Msa0626690:CDS | 35.0% |
| AATAGGTACGTGATTGCAAT+TGG | + | chr4_3:6635123-6635142 | None:intergenic | 35.0% | |
| GATGAAGCCATTCTTAAAGA+TGG | - | chr4_3:6635236-6635255 | Msa0626690:intron | 35.0% | |
| ! | ATCTGTATGTGATGATGATG+AGG | - | chr4_3:6635268-6635287 | Msa0626690:intron | 35.0% |
| AGATCCCACAGATAATACAA+AGG | - | chr4_3:6635316-6635335 | Msa0626690:intron | 35.0% | |
| CAAACCTAATAAGGGATTAG+TGG | + | chr4_3:6636021-6636040 | None:intergenic | 35.0% | |
| GAGTTGTTGCAAACCTAATA+AGG | + | chr4_3:6636030-6636049 | None:intergenic | 35.0% | |
| AATCCTCAACCCTAAAATCT+TGG | - | chr4_3:6636091-6636110 | Msa0626690:intron | 35.0% | |
| TTTGTTACAAACAGGGTCTA+TGG | - | chr4_3:6636324-6636343 | Msa0626690:intron | 35.0% | |
| TTGTTACAAACAGGGTCTAT+GGG | - | chr4_3:6636325-6636344 | Msa0626690:intron | 35.0% | |
| !!! | TTATGTTTTTTATGGGAGGG+GGG | - | chr4_3:6636473-6636492 | Msa0626690:intron | 35.0% |
| TGAGTGAAATTCGCTATGTA+TGG | + | chr4_3:6636551-6636570 | None:intergenic | 35.0% | |
| GGCCGAATAAATTAGATTGA+TGG | + | chr4_3:6636863-6636882 | None:intergenic | 35.0% | |
| TTACTATAACAAGCAGTGGT+AGG | - | chr4_3:6636917-6636936 | Msa0626690:intron | 35.0% | |
| !!! | CTTCTCCATTTTTTATGACC+CGG | - | chr4_3:6637447-6637466 | Msa0626690:intron | 35.0% |
| !!! | TTCTCCATTTTTTATGACCC+GGG | - | chr4_3:6637448-6637467 | Msa0626690:intron | 35.0% |
| ! | AAGCTACACTCTTTTTGTAG+AGG | + | chr4_3:6637577-6637596 | None:intergenic | 35.0% |
| TGTAGCTTAAGCAAAGTGAA+AGG | - | chr4_3:6637589-6637608 | Msa0626690:intron | 35.0% | |
| AAGTGATATTACTCTTCCAG+AGG | - | chr4_3:6637899-6637918 | Msa0626690:intron | 35.0% | |
| ! | TACCATTTTGTTCCTCACAT+TGG | + | chr4_3:6637965-6637984 | None:intergenic | 35.0% |
| ! | TAATTTCTTATTGGCTAGGG+TGG | - | chr4_3:6638803-6638822 | Msa0626690:intron | 35.0% |
| TAAATTCTGCAGATGGATGA+TGG | - | chr4_3:6638930-6638949 | Msa0626690:intron | 35.0% | |
| TGATGGCTATAACCTTAAAG+TGG | - | chr4_3:6638947-6638966 | Msa0626690:intron | 35.0% | |
| TCACTAGTTCATCCACTTTA+AGG | + | chr4_3:6638962-6638981 | None:intergenic | 35.0% | |
| CGCATGCAAAAAAAATAGAG+TGG | + | chr4_3:6639398-6639417 | None:intergenic | 35.0% | |
| AAACATGTGCTACAAGAAGA+TGG | - | chr4_3:6639681-6639700 | Msa0626690:intron | 35.0% | |
| AAGGTTCTTCTCATCTTGTA+TGG | + | chr4_3:6639885-6639904 | None:intergenic | 35.0% | |
| TATAGTGTAATGTCAGTCGA+TGG | - | chr4_3:6640018-6640037 | Msa0626690:intron | 35.0% | |
| AAAAACGTGGTCAATAGAGT+CGG | - | chr4_3:6640048-6640067 | Msa0626690:intron | 35.0% | |
| GTTATCAAAGAAGGTTCTCT+TGG | - | chr4_3:6640323-6640342 | Msa0626690:intron | 35.0% | |
| !! | CTTTCAGATGTGTTTCTAGT+AGG | + | chr4_3:6640463-6640482 | None:intergenic | 35.0% |
| !! | TTCATGGATTGGTGATCATT+TGG | + | chr4_3:6640720-6640739 | None:intergenic | 35.0% |
| ! | ATTTAGTTGGAATTGGGTTG+TGG | + | chr4_3:6640757-6640776 | None:intergenic | 35.0% |
| CCGAAGCAAGATTTATCTAA+AGG | - | chr4_3:6640891-6640910 | Msa0626690:intron | 35.0% | |
| TTGTAAATCCACATGAACAG+TGG | - | chr4_3:6641347-6641366 | Msa0626690:intron | 35.0% | |
| GATCTCCACCTCAAATAAAT+TGG | - | chr4_3:6641381-6641400 | Msa0626690:intron | 35.0% | |
| GATTACTCCATCATCAACTT+GGG | + | chr4_3:6642887-6642906 | None:intergenic | 35.0% | |
| TGATTACTCCATCATCAACT+TGG | + | chr4_3:6642888-6642907 | None:intergenic | 35.0% | |
| GGGAAACAGAGATTCAATAT+TGG | + | chr4_3:6642970-6642989 | None:intergenic | 35.0% | |
| ! | GAAAGTATAGTGTGGATAAG+AGG | + | chr4_3:6634972-6634991 | None:intergenic | 35.0% |
| ! | GGAAGAATGAAAGTATAGTG+TGG | + | chr4_3:6634980-6634999 | None:intergenic | 35.0% |
| ACAAAATTAATGGAGGAGTC+AGG | - | chr4_3:6635062-6635081 | Msa0626690:exon | 35.0% | |
| ACCAAATCAGAATCATGAGA+AGG | + | chr4_3:6643167-6643186 | None:intergenic | 35.0% | |
| ! | TGTGATGATGAGGATCAAAT+TGG | - | chr4_3:6643355-6643374 | Msa0626690:intron | 35.0% |
| AAGGAACTTTCAGATGTCAT+AGG | - | chr4_3:6643433-6643452 | Msa0626690:intron | 35.0% | |
| AGATGTCATAGGCTTAAAGA+AGG | - | chr4_3:6643444-6643463 | Msa0626690:intron | 35.0% | |
| ACCGTTAGTTGAAAAGTTGA+CGG | + | chr4_3:6643720-6643739 | None:intergenic | 35.0% | |
| ! | GGAAGAAGAGAAAAAAGCAT+AGG | - | chr4_3:6644231-6644250 | Msa0626690:intron | 35.0% |
| ATACCGAAACACTGGTAAAA+GGG | + | chr4_3:6644424-6644443 | None:intergenic | 35.0% | |
| TATACCGAAACACTGGTAAA+AGG | + | chr4_3:6644425-6644444 | None:intergenic | 35.0% | |
| ! | TAAAGAGTATACCGAAACAC+TGG | + | chr4_3:6644432-6644451 | None:intergenic | 35.0% |
| GTACTCATCTGAATTCACTT+TGG | + | chr4_3:6644826-6644845 | None:intergenic | 35.0% | |
| GTCCATTGTGAGAAACAAAA+TGG | - | chr4_3:6644918-6644937 | Msa0626690:intron | 35.0% | |
| AAGATGAAGATTTGCAAGGT+GGG | + | chr4_3:6644964-6644983 | None:intergenic | 35.0% | |
| AAAGATGAAGATTTGCAAGG+TGG | + | chr4_3:6644965-6644984 | None:intergenic | 35.0% | |
| CTGAAAGATGAAGATTTGCA+AGG | + | chr4_3:6644968-6644987 | None:intergenic | 35.0% | |
| TTGTTTAACATGTGCCCTAA+GGG | - | chr4_3:6645431-6645450 | Msa0626690:CDS | 35.0% | |
| AGAAGAAAACAAGAGAAGGG+TGG | + | chr4_3:6634926-6634945 | None:intergenic | 40.0% | |
| ACGAACCTTCTTTAAGCCTA+TGG | + | chr4_3:6635390-6635409 | None:intergenic | 40.0% | |
| TCGAAGTGACTTAGGATTGA+AGG | - | chr4_3:6635791-6635810 | Msa0626690:CDS | 40.0% | |
| ! | CCTAATAAGGGATTAGTGGA+GGG | + | chr4_3:6636017-6636036 | None:intergenic | 40.0% |
| ! | ACCTAATAAGGGATTAGTGG+AGG | + | chr4_3:6636018-6636037 | None:intergenic | 40.0% |
| TGTTACAAACAGGGTCTATG+GGG | - | chr4_3:6636326-6636345 | Msa0626690:intron | 40.0% | |
| GTGGTAGGATGATTTACAGT+AGG | - | chr4_3:6636932-6636951 | Msa0626690:intron | 40.0% | |
| TCTTGTCATAGTCCAATGTG+AGG | - | chr4_3:6637950-6637969 | Msa0626690:intron | 40.0% | |
| GTCCAATGTGAGGAACAAAA+TGG | - | chr4_3:6637960-6637979 | Msa0626690:intron | 40.0% | |
| TGAGGAACAAAATGGTATCC+TGG | - | chr4_3:6637968-6637987 | Msa0626690:intron | 40.0% | |
| !!! | GGTTGGTCAATATTTTGACC+AGG | + | chr4_3:6637989-6638008 | None:intergenic | 40.0% |
| TATATGTACCTTGGCAACGA+TGG | + | chr4_3:6638081-6638100 | None:intergenic | 40.0% | |
| ! | TGTCGAGATTGCTATTCTCA+GGG | + | chr4_3:6638988-6639007 | None:intergenic | 40.0% |
| ! | ATGTCGAGATTGCTATTCTC+AGG | + | chr4_3:6638989-6639008 | None:intergenic | 40.0% |
| TGAAATTCTCCCCCAAAGTA+CGG | + | chr4_3:6639114-6639133 | None:intergenic | 40.0% | |
| ACCAAAGTGCATGTCTTTGT+TGG | - | chr4_3:6639191-6639210 | Msa0626690:intron | 40.0% | |
| ACCAACAAAGACATGCACTT+TGG | + | chr4_3:6639195-6639214 | None:intergenic | 40.0% | |
| AATTGCACACAGTATGGACT+GGG | + | chr4_3:6639300-6639319 | None:intergenic | 40.0% | |
| ATGTGCTACAAGAAGATGGA+GGG | - | chr4_3:6639685-6639704 | Msa0626690:intron | 40.0% | |
| CATCCTCAGAAAGGGAAAAT+GGG | - | chr4_3:6639784-6639803 | Msa0626690:intron | 40.0% | |
| GAGAAGAACCTTTGCATGAA+AGG | - | chr4_3:6639893-6639912 | Msa0626690:intron | 40.0% | |
| TGTAATGTCAGTCGATGGAA+GGG | - | chr4_3:6640023-6640042 | Msa0626690:intron | 40.0% | |
| !! | ATGGATTGGTGATCATTTGG+TGG | + | chr4_3:6640717-6640736 | None:intergenic | 40.0% |
| !!! | GGTGGTTTTGGATTGATTCA+TGG | + | chr4_3:6640736-6640755 | None:intergenic | 40.0% |
| ! | AGAAACGTGTTGATCAGAGT+CGG | - | chr4_3:6640964-6640983 | Msa0626690:intron | 40.0% |
| AATGAGTACCACTGTTCATG+TGG | + | chr4_3:6641358-6641377 | None:intergenic | 40.0% | |
| ! | CGATGTGAGGATTTTGTTGA+TGG | + | chr4_3:6642264-6642283 | None:intergenic | 40.0% |
| TGAATCATGATGTCGATGTG+AGG | + | chr4_3:6642277-6642296 | None:intergenic | 40.0% | |
| ! | ACCATTTGGGTGACAACTTT+TGG | - | chr4_3:6642528-6642547 | Msa0626690:intron | 40.0% |
| TCCAAAAGTTGTCACCCAAA+TGG | + | chr4_3:6642532-6642551 | None:intergenic | 40.0% | |
| GGTGTAAGTAAGCAGCTATA+GGG | + | chr4_3:6642731-6642750 | None:intergenic | 40.0% | |
| TGGTGTAAGTAAGCAGCTAT+AGG | + | chr4_3:6642732-6642751 | None:intergenic | 40.0% | |
| TTATGGTTTAGCAGCAAAGG+TGG | - | chr4_3:6642766-6642785 | Msa0626690:CDS | 40.0% | |
| ! | TCTAAAGTGAAGGGTAGCTA+AGG | + | chr4_3:6642944-6642963 | None:intergenic | 40.0% |
| TATAGTGTGGATAAGAGGTG+GGG | + | chr4_3:6643034-6643053 | None:intergenic | 40.0% | |
| GTATAGTGTGGATAAGAGGT+GGG | + | chr4_3:6643035-6643054 | None:intergenic | 40.0% | |
| AGTATAGTGTGGATAAGAGG+TGG | + | chr4_3:6643036-6643055 | None:intergenic | 40.0% | |
| GCCTTCTCATGATTCTGATT+TGG | - | chr4_3:6643163-6643182 | Msa0626690:intron | 40.0% | |
| AGATCCCACAGATGATACAA+AGG | - | chr4_3:6643378-6643397 | Msa0626690:intron | 40.0% | |
| GATCCCACAGATGATACAAA+GGG | - | chr4_3:6643379-6643398 | Msa0626690:intron | 40.0% | |
| CATCCCTTTGTATCATCTGT+GGG | + | chr4_3:6643385-6643404 | None:intergenic | 40.0% | |
| TACAAAGGGATGCAATGAGA+AGG | - | chr4_3:6643393-6643412 | Msa0626690:intron | 40.0% | |
| GGAGATAACAGAGAGATTGA+AGG | - | chr4_3:6643414-6643433 | Msa0626690:intron | 40.0% | |
| GTCATAGGCTTAAAGAAGGT+TGG | - | chr4_3:6643448-6643467 | Msa0626690:intron | 40.0% | |
| ! | GCCGTCAACTTTTCAACTAA+CGG | - | chr4_3:6643716-6643735 | Msa0626690:intron | 40.0% |
| GTTTGATGGAGATGCAAGTA+TGG | + | chr4_3:6644080-6644099 | None:intergenic | 40.0% | |
| ! | TATCATGGCCTATTTTCGGA+TGG | - | chr4_3:6644107-6644126 | Msa0626690:intron | 40.0% |
| !! | CATAGTCTTTAGCTTTCTCC+AGG | + | chr4_3:6644731-6644750 | None:intergenic | 40.0% |
| GGAGAAAGCTAAAGACTATG+TGG | - | chr4_3:6644731-6644750 | Msa0626690:intron | 40.0% | |
| ! | AATGATGGTGATGTCAAGGA+TGG | + | chr4_3:6645024-6645043 | None:intergenic | 40.0% |
| ! | TAGCAATGATGGTGATGTCA+AGG | + | chr4_3:6645028-6645047 | None:intergenic | 40.0% |
| TGACATCACCATCATTGCTA+AGG | - | chr4_3:6645028-6645047 | Msa0626690:intron | 40.0% | |
| TTCTTAACATGTGCCCTTGA+GGG | + | chr4_3:6645317-6645336 | None:intergenic | 40.0% | |
| TTTCTTAACATGTGCCCTTG+AGG | + | chr4_3:6645318-6645337 | None:intergenic | 40.0% | |
| GTTGTTTAACATGTGCCCTA+AGG | - | chr4_3:6645430-6645449 | Msa0626690:CDS | 40.0% | |
| TATACAATGCAGATGGGTGA+TGG | - | chr4_3:6645561-6645580 | Msa0626690:intron | 40.0% | |
| AAACAAGAGAAGGGTGGTTG+AGG | + | chr4_3:6634920-6634939 | None:intergenic | 45.0% | |
| GGAGATCACAGAGATGTTGA+AGG | - | chr4_3:6635352-6635371 | Msa0626690:intron | 45.0% | |
| AAGGAACTTTCAGACGCCAT+AGG | - | chr4_3:6635371-6635390 | Msa0626690:intron | 45.0% | |
| AGACGCCATAGGCTTAAAGA+AGG | - | chr4_3:6635382-6635401 | Msa0626690:intron | 45.0% | |
| CCCTCCACTAATCCCTTATT+AGG | - | chr4_3:6636014-6636033 | Msa0626690:intron | 45.0% | |
| !!! | GAGCCAAGATTTTAGGGTTG+AGG | + | chr4_3:6636097-6636116 | None:intergenic | 45.0% |
| !!! | TCCATTTTTTATGACCCGGG+CGG | - | chr4_3:6637451-6637470 | Msa0626690:intron | 45.0% |
| AAATCATTGTCAGGGGTCGT+TGG | - | chr4_3:6637634-6637653 | Msa0626690:intron | 45.0% | |
| AGAGAGCTAGAACAAGAAGC+TGG | - | chr4_3:6637816-6637835 | Msa0626690:intron | 45.0% | |
| GACACTCTTGCTTTAACCTC+TGG | + | chr4_3:6637918-6637937 | None:intergenic | 45.0% | |
| GGATTGAGCTACGTAAGTGT+AGG | - | chr4_3:6639270-6639289 | Msa0626690:intron | 45.0% | |
| CAATTGCACACAGTATGGAC+TGG | + | chr4_3:6639301-6639320 | None:intergenic | 45.0% | |
| CATGTGCTACAAGAAGATGG+AGG | - | chr4_3:6639684-6639703 | Msa0626690:intron | 45.0% | |
| TGTGCTACAAGAAGATGGAG+GGG | - | chr4_3:6639686-6639705 | Msa0626690:intron | 45.0% | |
| ACATCCTAAGAAGGAGAGGA+GGG | - | chr4_3:6639740-6639759 | Msa0626690:intron | 45.0% | |
| GCATCCTCAGAAAGGGAAAA+TGG | - | chr4_3:6639783-6639802 | Msa0626690:intron | 45.0% | |
| ! | TCTCCCATTTTCCCTTTCTG+AGG | + | chr4_3:6639790-6639809 | None:intergenic | 45.0% |
| !! | GCTATTGGCCTTTCATGCAA+AGG | + | chr4_3:6639904-6639923 | None:intergenic | 45.0% |
| GTGTAATGTCAGTCGATGGA+AGG | - | chr4_3:6640022-6640041 | Msa0626690:intron | 45.0% | |
| CGATGGAAGGGAAAAAAACG+TGG | - | chr4_3:6640035-6640054 | Msa0626690:intron | 45.0% | |
| ! | ATGTTTTCCCTTCCATCGAC+TGG | + | chr4_3:6640075-6640094 | None:intergenic | 45.0% |
| ! | AATCTTCGAGTGGCGGTTTT+TGG | + | chr4_3:6640153-6640172 | None:intergenic | 45.0% |
| CTTCTTGGGTAATCTTCGAG+TGG | + | chr4_3:6640163-6640182 | None:intergenic | 45.0% | |
| !! | GAATTGGGTTGTGGTGGTTT+TGG | + | chr4_3:6640748-6640767 | None:intergenic | 45.0% |
| ! | TAGTTGGAATTGGGTTGTGG+TGG | + | chr4_3:6640754-6640773 | None:intergenic | 45.0% |
| ACCTTCCCATGCTTCAAACA+TGG | - | chr4_3:6641561-6641580 | Msa0626690:intron | 45.0% | |
| ! | ACCATGTTTGAAGCATGGGA+AGG | + | chr4_3:6641565-6641584 | None:intergenic | 45.0% |
| ! | AGCGACCATGTTTGAAGCAT+GGG | + | chr4_3:6641569-6641588 | None:intergenic | 45.0% |
| ! | TAGCGACCATGTTTGAAGCA+TGG | + | chr4_3:6641570-6641589 | None:intergenic | 45.0% |
| CTTCAAACATGGTCGCTATC+TGG | - | chr4_3:6641572-6641591 | Msa0626690:intron | 45.0% | |
| !! | GACTCATCCCAAGTTGATGA+TGG | - | chr4_3:6642877-6642896 | Msa0626690:CDS | 45.0% |
| AGGTTGTGAGGTGAGTAGTA+TGG | + | chr4_3:6642924-6642943 | None:intergenic | 45.0% | |
| TAAGAGGTGGGGTTGTGTAT+AGG | + | chr4_3:6643023-6643042 | None:intergenic | 45.0% | |
| TGGAGGAGTCAGGAGAAAAT+TGG | - | chr4_3:6643141-6643160 | Msa0626690:intron | 45.0% | |
| ! | TGACTCTGTGTGTGATGATG+AGG | - | chr4_3:6643345-6643364 | Msa0626690:intron | 45.0% |
| GCATCCCTTTGTATCATCTG+TGG | + | chr4_3:6643386-6643405 | None:intergenic | 45.0% | |
| ! | CAGCCCTTTTACCAGTGTTT+CGG | - | chr4_3:6644418-6644437 | Msa0626690:intron | 45.0% |
| AGAGAGCTAGAACAAGTAGC+TGG | - | chr4_3:6644774-6644793 | Msa0626690:intron | 45.0% | |
| ! | AATGCTAACTTGTGCCCTCA+AGG | - | chr4_3:6645300-6645319 | Msa0626690:intron | 45.0% |
| ! | ATGCTAACTTGTGCCCTCAA+GGG | - | chr4_3:6645301-6645320 | Msa0626690:intron | 45.0% |
| ! | TCTGCTAACTTGTGCCCTTA+GGG | + | chr4_3:6645448-6645467 | None:intergenic | 45.0% |
| !!! | ATTATTTTTTTAAATAAAGT+AGG | - | chr4_3:6635661-6635680 | Msa0626690:intron | 5.0% |
| !!! | TTATTTTTTTAAATAAAGTA+GGG | - | chr4_3:6635662-6635681 | Msa0626690:CDS | 5.0% |
| !!! | TAGTTATATTTTAATTTTAA+AGG | - | chr4_3:6637492-6637511 | Msa0626690:intron | 5.0% |
| !!! | TTTTAATAATTTACTAAAAA+GGG | + | chr4_3:6638750-6638769 | None:intergenic | 5.0% |
| !!! | ATTTTAATAATTTACTAAAA+AGG | + | chr4_3:6638751-6638770 | None:intergenic | 5.0% |
| !! | AATATTAATTAATTTCTTAT+TGG | - | chr4_3:6638794-6638813 | Msa0626690:intron | 5.0% |
| !!! | ATAAATTTTATTATGTAAAA+AGG | + | chr4_3:6640558-6640577 | None:intergenic | 5.0% |
| !!! | TAATTATTTTTATATTTAGT+TGG | + | chr4_3:6640770-6640789 | None:intergenic | 5.0% |
| !!! | TTTTATATAAGATAAATATT+AGG | + | chr4_3:6641261-6641280 | None:intergenic | 5.0% |
| TGGAGGAGTCGGGAGAAAAT+TGG | - | chr4_3:6635072-6635091 | Msa0626690:CDS | 50.0% | |
| GATGATAGATGCCCCATGTG+CGG | - | chr4_3:6635721-6635740 | Msa0626690:CDS | 50.0% | |
| ACAGAAAGCCATCCGCACAT+GGG | + | chr4_3:6635736-6635755 | None:intergenic | 50.0% | |
| ACCGCCCGGGTCATAAAAAA+TGG | + | chr4_3:6637455-6637474 | None:intergenic | 50.0% | |
| ! | AACGATGGTGATGTCAAGGG+TGG | + | chr4_3:6638066-6638085 | None:intergenic | 50.0% |
| ! | GGCAACGATGGTGATGTCAA+GGG | + | chr4_3:6638069-6638088 | None:intergenic | 50.0% |
| ! | TGGCAACGATGGTGATGTCA+AGG | + | chr4_3:6638070-6638089 | None:intergenic | 50.0% |
| TGACATCACCATCGTTGCCA+AGG | - | chr4_3:6638070-6638089 | Msa0626690:intron | 50.0% | |
| AGAAAGGGCCACCGTACTTT+GGG | - | chr4_3:6639100-6639119 | Msa0626690:intron | 50.0% | |
| AATTCTCCCCCAAAGTACGG+TGG | + | chr4_3:6639111-6639130 | None:intergenic | 50.0% | |
| GTGCTACAAGAAGATGGAGG+GGG | - | chr4_3:6639687-6639706 | Msa0626690:intron | 50.0% | |
| TCCTCTCGCACATCCTAAGA+AGG | - | chr4_3:6639731-6639750 | Msa0626690:intron | 50.0% | |
| TCCTTCTTAGGATGTGCGAG+AGG | + | chr4_3:6639735-6639754 | None:intergenic | 50.0% | |
| TCGCACATCCTAAGAAGGAG+AGG | - | chr4_3:6639736-6639755 | Msa0626690:intron | 50.0% | |
| CACATCCTAAGAAGGAGAGG+AGG | - | chr4_3:6639739-6639758 | Msa0626690:intron | 50.0% | |
| CATCCTAAGAAGGAGAGGAG+GGG | - | chr4_3:6639741-6639760 | Msa0626690:intron | 50.0% | |
| ATCCTAAGAAGGAGAGGAGG+GGG | - | chr4_3:6639742-6639761 | Msa0626690:intron | 50.0% | |
| CTCTCACGCATCCTCAGAAA+GGG | - | chr4_3:6639776-6639795 | Msa0626690:intron | 50.0% | |
| AATAGAGTCGGACCAGTCGA+TGG | - | chr4_3:6640060-6640079 | Msa0626690:intron | 50.0% | |
| GCTGAGTCTTTCGAGCTTCT+TGG | + | chr4_3:6640119-6640138 | None:intergenic | 50.0% | |
| CTTGGGTAATCTTCGAGTGG+CGG | + | chr4_3:6640160-6640179 | None:intergenic | 50.0% | |
| GAAGGGTAGCTAAGGTTGTG+AGG | + | chr4_3:6642936-6642955 | None:intergenic | 50.0% | |
| AGGTGGGGTTGTGTATAGGT+GGG | + | chr4_3:6643019-6643038 | None:intergenic | 50.0% | |
| GACACTCTTGCTTTGACCTC+TGG | + | chr4_3:6644876-6644895 | None:intergenic | 50.0% | |
| ! | GTCTGCTAACTTGTGCCCTT+AGG | + | chr4_3:6645449-6645468 | None:intergenic | 50.0% |
| AAGGGTGGTTGAGGTTGTGG+AGG | + | chr4_3:6634911-6634930 | None:intergenic | 55.0% | |
| GAGAAGGGTGGTTGAGGTTG+TGG | + | chr4_3:6634914-6634933 | None:intergenic | 55.0% | |
| ATAGATGCCCCATGTGCGGA+TGG | - | chr4_3:6635725-6635744 | Msa0626690:CDS | 55.0% | |
| CAGAAAGCCATCCGCACATG+GGG | + | chr4_3:6635735-6635754 | None:intergenic | 55.0% | |
| CACAGAAAGCCATCCGCACA+TGG | + | chr4_3:6635737-6635756 | None:intergenic | 55.0% | |
| ATGTCTAACCTGGGCAACGC+CGG | - | chr4_3:6636582-6636601 | Msa0626690:intron | 55.0% | |
| !!! | TTTTTTACCCGGCGTTGCCC+AGG | + | chr4_3:6636593-6636612 | None:intergenic | 55.0% |
| TTATGACCCGGGCGGTAACA+CGG | - | chr4_3:6637459-6637478 | Msa0626690:intron | 55.0% | |
| ! | TTTTACCCGTGTTACCGCCC+GGG | + | chr4_3:6637468-6637487 | None:intergenic | 55.0% |
| ! | CTTTTACCCGTGTTACCGCC+CGG | + | chr4_3:6637469-6637488 | None:intergenic | 55.0% |
| CAGAAAGGGCCACCGTACTT+TGG | - | chr4_3:6639099-6639118 | Msa0626690:intron | 55.0% | |
| GAAAGGGCCACCGTACTTTG+GGG | - | chr4_3:6639101-6639120 | Msa0626690:intron | 55.0% | |
| AAAGGGCCACCGTACTTTGG+GGG | - | chr4_3:6639102-6639121 | Msa0626690:intron | 55.0% | |
| ! | CCTTTCTGAGGATGCGTGAG+AGG | + | chr4_3:6639778-6639797 | None:intergenic | 55.0% |
| CCTCTCACGCATCCTCAGAA+AGG | - | chr4_3:6639775-6639794 | Msa0626690:intron | 55.0% | |
| AGTCGGACCAGTCGATGGAA+GGG | - | chr4_3:6640065-6640084 | Msa0626690:intron | 55.0% | |
| !! | CTTCGAGTGGCGGTTTTTGG+AGG | + | chr4_3:6640150-6640169 | None:intergenic | 55.0% |
| GAGGTGAGTAGTATGGTGCG+TGG | + | chr4_3:6642917-6642936 | None:intergenic | 55.0% | |
| GAGGTGGGGTTGTGTATAGG+TGG | + | chr4_3:6643020-6643039 | None:intergenic | 55.0% | |
| GATGGACGACACTTCGATCC+TGG | - | chr4_3:6644710-6644729 | Msa0626690:intron | 55.0% | |
| TGTCTAACCTGGGCAACGCC+GGG | - | chr4_3:6636583-6636602 | Msa0626690:intron | 60.0% | |
| TATGACCCGGGCGGTAACAC+GGG | - | chr4_3:6637460-6637479 | Msa0626690:intron | 60.0% | |
| CTCCCCCTCCTCTCCTTCTT+AGG | + | chr4_3:6639747-6639766 | None:intergenic | 60.0% | |
| GAGTCGGACCAGTCGATGGA+AGG | - | chr4_3:6640064-6640083 | Msa0626690:intron | 60.0% | |
| TGAAGCATGGGAAGGTCGCG+TGG | + | chr4_3:6641557-6641576 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 6634865 | 6645846 | 6634865 | ID=Msa0626690;Name=Msa0626690 |
| chr4_3 | mRNA | 6634865 | 6645846 | 6634865 | ID=Msa0626690-mRNA-1;Parent=Msa0626690;Name=Msa0626690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=206|0.83|1|1|0.83|0.71|7|182|375 |
| chr4_3 | exon | 6634865 | 6635016 | 6634865 | ID=Msa0626690-mRNA-1:exon:1891;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6635037 | 6635138 | 6635037 | ID=Msa0626690-mRNA-1:exon:1890;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6635662 | 6636000 | 6635662 | ID=Msa0626690-mRNA-1:exon:1889;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6637246 | 6637404 | 6637246 | ID=Msa0626690-mRNA-1:exon:1888;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6642620 | 6642958 | 6642620 | ID=Msa0626690-mRNA-1:exon:1887;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6645308 | 6645484 | 6645308 | ID=Msa0626690-mRNA-1:exon:1886;Parent=Msa0626690-mRNA-1 |
| chr4_3 | exon | 6645599 | 6645846 | 6645599 | ID=Msa0626690-mRNA-1:exon:1885;Parent=Msa0626690-mRNA-1 |
| chr4_3 | five_prime_UTR | 6645641 | 6645846 | 6645641 | ID=Msa0626690-mRNA-1:five_prime_utr;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6645599 | 6645640 | 6645599 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6645308 | 6645484 | 6645308 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6642620 | 6642958 | 6642620 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6637246 | 6637404 | 6637246 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6635662 | 6636000 | 6635662 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | CDS | 6635067 | 6635138 | 6635067 | ID=Msa0626690-mRNA-1:cds;Parent=Msa0626690-mRNA-1 |
| chr4_3 | three_prime_UTR | 6635037 | 6635066 | 6635037 | ID=Msa0626690-mRNA-1:three_prime_utr;Parent=Msa0626690-mRNA-1 |
| chr4_3 | three_prime_UTR | 6634865 | 6635016 | 6634865 | ID=Msa0626690-mRNA-1:three_prime_utr;Parent=Msa0626690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
