AlfalfaGEDB | Msa0586680

M. sativa cultivar zhongmu-4 / Msa0586680

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586680	XP_003604324.2	76.596	188	37	4	1	186	1	183	1.24e-87	273
Msa0586680	XP_003604324.2	90.052	191	17	2	187	375	16	206	2.73e-110	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586680	sp\|Q9T072\|BH025_ARATH	40.244	164	84	5	223	373	163	325	8.46e-23	100
Msa0586680	sp\|Q9T072\|BH025_ARATH	40.972	144	71	5	57	187	163	305	1.43e-20	94.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586680	G7JFR2	76.596	188	37	4	1	186	1	183	5.94e-88	273
Msa0586680	G7JFR2	90.052	191	17	2	187	375	16	206	1.31e-110	331

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0207030	Msa0586680	0.803761	2.986906e-49	-8.615850e-47
Msa0506830	Msa0586680	0.809915	1.494365e-50	-8.615850e-47
Msa0586680	Msa0626690	0.889338	2.649334e-73	-8.615850e-47
Msa0586680	Msa0663230	0.971106	1.210581e-132	-8.615850e-47
Msa0586680	Msa0721280	0.811562	6.579251e-51	-8.615850e-47
Msa0586680	Msa0811040	0.800558	1.362468e-48	-8.615850e-47
Msa0586680	Msa0867980	0.880782	4.133287e-70	-8.615850e-47
Msa0586680	Msa1040980	0.806845	6.748789e-50	-8.615850e-47
Msa0586680	Msa1063420	0.804300	2.307986e-49	-8.615850e-47
Msa0586680	Msa1208790	0.816301	5.933834e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586680	MtrunA17_Chr4g0002831	90.052	191	17	2	187	375	16	206	2.51e-114	331
Msa0586680	MtrunA17_Chr4g0002831	76.596	188	37	4	1	186	1	183	1.14e-91	273
Msa0586680	MtrunA17_Chr4g0002851	83.871	186	19	2	1	186	1	175	6.02e-103	302
Msa0586680	MtrunA17_Chr4g0002851	73.958	192	39	2	187	375	15	198	2.51e-90	270
Msa0586680	MtrunA17_Chr7g0233441	82.796	186	21	2	1	186	1	175	1.35e-99	293
Msa0586680	MtrunA17_Chr7g0233441	78.836	189	35	2	187	375	15	198	2.63e-96	285
Msa0586680	MtrunA17_Chr2g0333621	48.485	165	67	4	223	372	149	310	1.81e-36	134
Msa0586680	MtrunA17_Chr2g0333621	45.139	144	63	4	57	186	149	290	2.88e-25	104
Msa0586680	MtrunA17_Chr4g0002801	45.833	168	74	4	222	372	162	329	7.51e-35	130
Msa0586680	MtrunA17_Chr4g0002801	35.052	194	92	5	12	186	131	309	1.32e-21	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586680	AT4G37850.2	40.244	164	84	5	223	373	163	325	8.60e-24	100
Msa0586680	AT4G37850.2	40.972	144	71	5	57	187	163	305	1.45e-21	94.7
Msa0586680	AT4G37850.1	40.244	164	84	5	223	373	163	325	8.60e-24	100
Msa0586680	AT4G37850.1	40.972	144	71	5	57	187	163	305	1.45e-21	94.7
Msa0586680	AT2G22770.1	35.556	180	86	4	222	373	142	319	3.53e-21	93.6
Msa0586680	AT2G22770.1	35.032	157	76	3	56	186	142	298	9.93e-16	77.8
Msa0586680	AT2G22760.1	36.364	165	90	6	223	372	130	294	5.16e-21	92.4
Msa0586680	AT2G22760.1	38.462	130	67	3	70	186	144	273	5.07e-19	87.0
Msa0586680	AT2G22760.2	37.681	138	73	3	70	194	144	281	3.60e-20	90.1
Msa0586680	AT2G22760.2	37.241	145	77	5	223	353	130	274	3.43e-17	81.3

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Find 72 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAAAACAAGAGAA+GGG	0.535404	4_2:-7966144	None:intergenic
AAACAAGAGAAGGGTGGTTG+AGG	0.454672	4_2:-7966135	None:intergenic
AAAGATGAAGATTTGCAAGG+TGG	0.649158	4_2:-7976900	None:intergenic
AACGATGGTGATGTCAAGGG+TGG	0.703274	4_2:-7969489	None:intergenic
AAGATGAAGATTTGCAAGGT+GGG	0.590601	4_2:-7976899	None:intergenic
AAGGAACTTTCAGACGCCAT+AGG	0.546154	4_2:+7966597	Msa0586680:CDS
AAGGAACTTTCAGATGTCAT+AGG	0.393216	4_2:+7975185	Msa0586680:CDS
AAGGGTGGTTGAGGTTGTGG+AGG	0.572193	4_2:-7966126	None:intergenic
AAGTGATAATACTCTTCCAG+AGG	0.687795	4_2:+7976795	Msa0586680:CDS
AAGTGATATTACTCTTCCAG+AGG	0.654563	4_2:+7969325	Msa0586680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTAATATAATGAGTACGA+TGG	-	chr4_2:7966105-7966124	None:intergenic	30.0%
GAAAAGAAGAAAACAAGAGA+AGG	-	chr4_2:7966148-7966167	None:intergenic	30.0%
TGGTCCAAGAATATTATGTA+AGG	-	chr4_2:7966238-7966257	None:intergenic	30.0%
TTAAGAATTCGAAGTGACTT+AGG	+	chr4_2:7967024-7967043	Msa0586680:intron	30.0%
ATTAGTGGAGGGAAAAAATT+AGG	-	chr4_2:7967247-7967266	None:intergenic	30.0%
AGTTGTTGCAAACCTAATAA+GGG	-	chr4_2:7967270-7967289	None:intergenic	30.0%
CCAGGTTAGACATATAATTA+AGG	-	chr4_2:7967814-7967833	None:intergenic	30.0%
CCTTAATTATATGTCTAACC+TGG	+	chr4_2:7967811-7967830	Msa0586680:intron	30.0%
CATATTACTATAACAAGCAG+TGG	+	chr4_2:7968152-7968171	Msa0586680:intron	30.0%
CTTATACACTACATTTGAAG+TGG	-	chr4_2:7968581-7968600	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	7966083	7977765	7966083	ID=Msa0586680;Name=Msa0586680
chr4_2	mRNA	7966083	7977765	7966083	ID=Msa0586680-mRNA-1;Parent=Msa0586680;Name=Msa0586680-mRNA-1;_AED=0.24;_eAED=0.24;_QI=214\|0.8\|1\|1\|1\|1\|6\|183\|375
chr4_2	exon	7966083	7966338	7966083	ID=Msa0586680-mRNA-1:exon:2094;Parent=Msa0586680-mRNA-1
chr4_2	exon	7966453	7966629	7966453	ID=Msa0586680-mRNA-1:exon:2095;Parent=Msa0586680-mRNA-1
chr4_2	exon	7969179	7969517	7969179	ID=Msa0586680-mRNA-1:exon:2096;Parent=Msa0586680-mRNA-1
chr4_2	exon	7975059	7975217	7975059	ID=Msa0586680-mRNA-1:exon:2097;Parent=Msa0586680-mRNA-1
chr4_2	exon	7976649	7976987	7976649	ID=Msa0586680-mRNA-1:exon:2098;Parent=Msa0586680-mRNA-1
chr4_2	exon	7977511	7977765	7977511	ID=Msa0586680-mRNA-1:exon:2099;Parent=Msa0586680-mRNA-1
chr4_2	five_prime_UTR	7966083	7966296	7966083	ID=Msa0586680-mRNA-1:five_prime_utr;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7966297	7966338	7966297	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7966453	7966629	7966453	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7969179	7969517	7969179	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7975059	7975217	7975059	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7976649	7976987	7976649	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	CDS	7977511	7977582	7977511	ID=Msa0586680-mRNA-1:cds;Parent=Msa0586680-mRNA-1
chr4_2	three_prime_UTR	7977583	7977765	7977583	ID=Msa0586680-mRNA-1:three_prime_utr;Parent=Msa0586680-mRNA-1

Gene Sequence

>Msa0586680

ATGGAGGAGTCGGGAGAAAATTGGCCTTCTAATTCTGATTTGGAAATAAGTGATGAAGCCATTCTTAAAGATGGAGAATCTGAATCTGTATGTGATGATGATGAGGATCATTATTTTGAAGATCAGGTTGGAGATCCCACAGATAATACAAAGGAAAATAATGAGAAGGAGATCACAGAGATGTTGAAGGAACTTTCAGACGCCATAGGCTTAAAGAAGATGGATGAAATTTCAATCATAGACAAAGCTAGAGACTATGTAGCAACACTTCAAGAACGTGTGAGAGAGCTAGAACAAGAAGCTGGATCCAACATTTGTACTAACAAAAGGACCAAAGTGAGTTCAAATTACTACAATTGTGGAACAAGTGATATTACTCTTCCAGAGGTTAAAGCAAGAGTGTCACAAAAAGATGTTCTTGTCATAGTCCAATGTGAGGAACAAAATGGTATCCTGGTCAAAATATTGACCAACCTTGAAAATCTTCATCTTTCAGTAGTTAATAGTAGTGTCTTGCAATTTGGAAAATCCACCCTTGACATCACCATCGTTGCCAAGGAAATACTTGATGAAGTCATTTTTGAAGATGGAGAATCTGAATCTGTGTGTGATGATGAGGATCAAATTGGAGATCCCACAGATGATACAAAGGGATGCAATGAGAAGGAGATAACAGAGAGATTGAAGGAACTTTCAGATGTCATAGGCTTAAAGAAGATGGACGACACTTCGATCCTGGAGAAAGCTAAAGACTATGTGGAAAAACTTGCAGAACGTGTGAGAGAGCTAGAACAAGTAGCTGGATCAAACATTTGTAGCAACAAAAGGACCAAAGTGAATTCAGATGAGTACAATTGTGGAACAAGTGATAATACTCTTCCAGAGGTCAAAGCAAGAGTGTCACAAAAAGATGTACTTGTCATAGTCCATTGTGAGAAACAAAATGGTATACTGCTCAAAATACTGACCCACCTTGCAAATCTTCATCTTTCAGTAGTTAATAGTAGTGTCTTGCAATTTGGAAAATCCATCCTTGACATCACCATCATTGCTAAGATGGGTGATGGCTACAACATCTCAGTGAATGAATTAGTGAAAACTCTGAGAATGGTGATCTCTACACAATAG

Protein sequence

>Msa0586680

MEESGENWPSNSDLEISDEAILKDGESESVCDDDEDHYFEDQVGDPTDNTKENNEKEITEMLKELSDAIGLKKMDEISIIDKARDYVATLQERVRELEQEAGSNICTNKRTKVSSNYYNCGTSDITLPEVKARVSQKDVLVIVQCEEQNGILVKILTNLENLHLSVVNSSVLQFGKSTLDITIVAKEILDEVIFEDGESESVCDDEDQIGDPTDDTKGCNEKEITERLKELSDVIGLKKMDDTSILEKAKDYVEKLAERVRELEQVAGSNICSNKRTKVNSDEYNCGTSDNTLPEVKARVSQKDVLVIVHCEKQNGILLKILTHLANLHLSVVNSSVLQFGKSILDITIIAKMGDGYNISVNELVKTLRMVISTQ*